Citrus Sinensis ID: 044236

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------
Protein Sequence
LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEccccccccccccccccccccEEEccccccccccccccccccEEEccccccccccHHHHHccccccEEcccccccccccHHHccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccEEEcccccEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHccccccccccEEEEcccccccccccccEEEEEEcccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHcccccccccEEcccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccccHHcccccccccccccccccccccEEEEEEcccccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccccccEEEcccccccccccHHcccccEEEccccccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHcHHccccHHHHHHHccccccEccHHHHHHHHHcccHHcEEEcccccEEEEEEcccccEEEEEEcccccccccccHHHHHHHHcccccccHEEEEEEEEcccccccccccccEEEEEccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEEccccHHHHHHHcHHHEEccccccccccEHHcccccEEEEccccccccccHcEEEEEcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccEEccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
LQTSQTQVLLQLRKhleypspldiwgnyegdlcnltstahvsitcqdnsvtglkimgdkpvkentaynghpipnqtlsesfsidSFVTTLTRLTTLRVLSLVslgiwgplpdkihrLSSLELldmssnflfgaipsGISRLVRLQTLtmdtnffddnvpdwwdSLSNLTVLSlksnqlkgqfpssicRIATLTDIAmsnnelsgklpdmsaltslHVLDLREnkldsglplmpkGLVTVLLSRnlfsgaipqqFGELAQLQHldlsfndlsgippsvlfslpnisyLHLASNMlsgtlpkdlscgskldsisdkrvvkfggnclsydtpsqhkeafcketngskssrgrEIGLIAAIAFGAVLVLVLSAFGVIIYCKrcctkgrqeqstrpkivqdnaptgvssEVLANARLISQAVKlgtqgspayRTFYLEELKEATnnfdslsfmgegsrgklykgrlengtYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHciesgsqddsntnKVFLVYEYipngsyrahlsencpenvlKWSDRLAILIGVAKAVHFLHSSVisgsfsnrlttnnilldEHRIAKLSDYGISIIMEEHEkleakgegpkarYGFLFICRTSAENVVIVVDIQrtkleddvyNFGFILLESlvgpivtgkgEAFLLNEMasfgsqdgrrrivdpvvlttcsqesLSIVVSITnkcicpepssrpsfEDVLWNLQYAAQVQAtadadqksdsts
Flexible Loop (DISEMBL)
LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPipnqtlsesfSIDSFVTTLTRLTTLRVLSLVslgiwgplpDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLsydtpsqhkeaFCKEtngskssrGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCtkgrqeqstrpkivqdnaptgVSSEVLANARLISQAvklgtqgsPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSvisgsfsnrLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMasfgsqdgrrrIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQAtadadqksdsts
Low Complexity Region (SEG)
lqtsqtqvllqlRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFvttltrlttlrvlslvslGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLqyaaqvqatadadqKSDSTS
Disordered region (IsUnstruct)
*******VLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVK*NTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNN********MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYD**********************EIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTK***********************VLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESG*****NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKL*****GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE*****SFEDVLWNLQYAAQV**************
Disordered Region (DISOPRED)
*QTSQTQVLLQLRKHLEYPSP*DIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYD**************************IAAIAFGAVLVLVLSAFGVIIYCKRCC**********************SSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK**IQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE*********GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT*****FL***MAS*GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL********************
Disordered Region (DISEMBL)
LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCT**********KIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV**************
Disordered Region (DISPRO)
LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	747	2.2.26 [Sep-21-2011]
Q8LFN2	802	Probable inactive leucine	no	no	0.904	0.842	0.413	1e-145
Q9M9S4	728	Probable LRR receptor-lik	no	no	0.836	0.858	0.320	2e-89
C0LGJ9	742	Probable LRR receptor-lik	no	no	0.875	0.881	0.334	7e-82
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.769	0.482	0.283	2e-53
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.771	0.461	0.271	1e-48
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.784	0.468	0.273	4e-47
Q9LP24	1120	Probable leucine-rich rep	no	no	0.712	0.475	0.271	4e-45
Q9LJF3	1164	Receptor-like protein kin	no	no	0.796	0.511	0.266	5e-45
C0LGP9	784	Probable leucine-rich rep	no	no	0.809	0.771	0.268	1e-43
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.773	0.557	0.254	3e-43

>sp|Q8LFN2|Y3037_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1

 Score =  514 bits (1325), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 312/754 (41%), Positives = 439/754 (58%), Gaps = 78/754 (10%)

Query: 18  YPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTL 77
           YP  L+ W NY  D CN   +  +++ C ++SVT L I+GD         NG       L
Sbjct: 43  YPKVLNSWNNYT-DFCNSEPSPSLTVVCYEDSVTQLHIIGD---------NG----THML 88

Query: 78  SESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSG 137
            +SFSI+SFVTTL +L  ++VL+ VSLG+WG LP KI+RLSSLE+L++SSNFLFG IP  
Sbjct: 89  PKSFSINSFVTTLVKLPDVKVLTFVSLGLWGWLPQKINRLSSLEILNVSSNFLFGPIPHE 148

Query: 138 ISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAM 197
           +S L  LQTL +D N F   +PDW DSL +L VLSL+ N L G  PSS+  ++ L  +A+
Sbjct: 149 LSSLATLQTLILDENMFSGELPDWIDSLPSLAVLSLRKNVLNGSLPSSLSSLSGLRVLAL 208

Query: 198 SNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI-PQQFGE 256
           +NN  +G LPD+S LT+L VLDL  N      P +   LVT++LS+N F  A+  ++   
Sbjct: 209 ANNRFNGALPDLSHLTNLQVLDLEGNSFGPLFPRLSNKLVTLILSKNKFRSAVSAEEVSS 268

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL-------- 308
           L QLQHLDLS+N   G  P+ L SLP I+YL+++ N L+G L  +LSC S+L        
Sbjct: 269 LYQLQHLDLSYNTFVGPFPTSLMSLPAITYLNISHNKLTGRLSANLSCNSQLMFVDMSSN 328

Query: 309 -----------DSISDKRVVKFGGNCLSYDTPSQHKEAFCK----------ETNGSKSSR 347
                       S    R V +  NCL+     Q   +FC           +     S  
Sbjct: 329 LLTGSLPTCLKPSSGTSRDVVYASNCLATTNEDQRPVSFCSNEALAVGILPQRRNKVSKV 388

Query: 348 GREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVL 407
           G  +G+ A+I    +L   L      +  K+  TK      + P+++++NA  G +S++L
Sbjct: 389 GIALGVTASILGVLLLAGALFVVLRRLNAKKTVTK------SSPRLIRENASMGYTSKLL 442

Query: 408 ANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYV 467
           ++AR ISQ +KLG  G PAYRTF LEEL+ ATNNF+S +FMGEGS+G++Y+GRL++G++V
Sbjct: 443 SDARYISQTMKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFV 502

Query: 468 AIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIP 527
           AIR L   K  S QNL   ++ ++KL+H HLVS+LGHC E    DDS  +++F V+EY+P
Sbjct: 503 AIRCLKMKKSCSTQNLMHHIELIAKLRHRHLVSVLGHCFEC-YLDDSTVSRMFFVFEYVP 561

Query: 528 NGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR 587
           NG  R  +S+     +L W  R+++ IGVAK + FLH+ ++ G + N L   +ILLD + 
Sbjct: 562 NGELRTWISDGHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNL 621

Query: 588 IAKLSDYGISIIMEEHEKLEAKG--EGPKARYGFLFICRTSAENVVIVVDIQRTKLED-- 643
            AKLS Y + +++E   K+   G   GPK                         K ED  
Sbjct: 622 AAKLSSYNLPLLVEGLGKVGQVGSRSGPKG--------------------TPSIKDEDKI 661

Query: 644 DVYNFGFILLESLVGPIVTGKGEAFLLNE--MASFGSQDG-RRRIVDPVVLTTCSQESLS 700
           D+Y+FG ILLE +VG  +  K +  +L E   AS  + DG RR +VDP V   CS +SL 
Sbjct: 662 DIYDFGVILLELIVGRPLRAKSQVDVLKEQLQASISADDGARRSMVDPTVHRACSDQSLK 721

Query: 701 IVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ 734
            ++ I  +C+  +P  RPS EDVLWNLQ+A+QVQ
Sbjct: 722 TMMEICVRCLLKDPLERPSIEDVLWNLQFASQVQ 755

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1

 Score =  330 bits (846), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 254/793 (32%), Positives = 362/793 (45%), Gaps = 168/793 (21%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           L +S+++ LL+++KHL+YP  L  W N+  + C L S+    I C +  VT L + G++ 
Sbjct: 29  LISSESRTLLEIQKHLQYPPTLRSWSNWT-NFCYLPSSPSFKILCFNGHVTELTVTGNRT 87

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
           VK              L   FS DS  T LT+L+ L+ LSLVSLGI GPL          
Sbjct: 88  VK--------------LPGRFSSDSLFTVLTKLSNLKTLSLVSLGISGPL---------- 123

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
                         PS I RL         ++ F                       + G
Sbjct: 124 --------------PSQIIRLSSSLQSLNLSSNF-----------------------ISG 146

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL-PLMPKGLVTV 239
             P  I  +  L  + ++NN  +G +PD+  L++L  L+L  NKL   + P +   L+T+
Sbjct: 147 NIPKEISSLKNLRSLVLANNLFNGSVPDLRGLSNLQELNLGGNKLGPEVVPSLASNLITI 206

Query: 240 LLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
            L  N F   IP+Q  +L +LQ LDLS N  +G  P  L SLP++  L LA N+LSG+LP
Sbjct: 207 SLKNNSFGSKIPEQIKKLNKLQSLDLSSNKFTGSIPRFLLSLPSLQNLSLAQNLLSGSLP 266

Query: 300 KDLSCGSKLDSISDKR-----------------VVKFGGNCLSYD-TPS---QHKEAFC- 337
               C SKL  +   R                 V+ F  NCLS + +PS   Q    FC 
Sbjct: 267 NSSLCNSKLRILDVSRNLLTGKLPSCFSSKKQTVLLFTFNCLSINGSPSAKYQRPVTFCE 326

Query: 338 ----------KETNGSKSSRGREIGL--------------IAAIAFGAVLVLVLSAFGVI 373
                     K     K  +  + G+              ++A+  G VLV +  +    
Sbjct: 327 NEAKQAVAAVKSDTKDKERKEEDTGIELGLVIGIIIGVILVSAVLAGLVLVRMRKS---- 382

Query: 374 IYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLE 433
               R   +  +  +     V  N     +S+ + + R + Q ++    G   YR F LE
Sbjct: 383 ----RSKEEPLEANNVDQVTVCSNTTRSTTSKTVPDLRRVPQTMRSAVIGLSPYRVFSLE 438

Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL 493
           EL+EATNNFD+ +  GE    +LYKG L  G  V +R +   +K S QNL  +++ LSKL
Sbjct: 439 ELEEATNNFDAENLCGE----QLYKGCLREGIAVTVRCIKLKQKNSTQNLAQQMEVLSKL 494

Query: 494 QHPHLVSLLGHCIESGSQDDSNT---NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
           +H HLVS+LGHCI  G+  D +    + +F+V EYI NGS R +L++   + VLKW  R+
Sbjct: 495 RHMHLVSVLGHCI--GTYQDHHPYAGSTIFIVQEYISNGSLRDYLTDWRKKEVLKWPQRM 552

Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
           +I IGVA+ + FLH+ V  G F N L   N+LLDE    KLS Y I +  +   +  +  
Sbjct: 553 SIAIGVARGIQFLHTGVAPGIFGNNLEIENVLLDETLTVKLSGYSIPLPSKVGAESPSNE 612

Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
           +G K                            +DVY FG IL++     I+TGK  A   
Sbjct: 613 DGEK----------------------------EDVYQFGVILIQ-----IITGKVIAAAS 639

Query: 671 NEMASFGSQ---------DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
           +E+ S   Q            R + DP V  T + ESL   V     C+C +   RPS E
Sbjct: 640 SELGSLKLQLENSLRDEPSVLRSLADPCVRGTYAYESLRTTVEFAINCLCEDQRKRPSIE 699

Query: 722 DVLWNLQYAAQVQ 734
           DV+WNLQY  QVQ
Sbjct: 700 DVVWNLQYTIQVQ 712

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ9|Y2278_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1

 Score =  305 bits (782), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 258/771 (33%), Positives = 380/771 (49%), Gaps = 117/771 (15%)

Query: 3   TSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVK 62
           +S++Q LL+++K L+YP  L  W +   + C++  +  + I C    VT L + G++  K
Sbjct: 31  SSESQTLLEIQKQLQYPQVLQSWTDTT-NFCHIRPSPSLRIICLHGHVTELTVTGNRTSK 89

Query: 63  ENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPL-PDKIHRLS-SL 120
                         LS SF      T LT+L++L+ LSL SLGI G L P  I +LS SL
Sbjct: 90  --------------LSGSF--HKLFTLLTQLSSLKTLSLTSLGISGSLSPKIITKLSPSL 133

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E L++SSNF+ G IP  I  L  L++L +  N F   V D    LSNL  L L  N+L  
Sbjct: 134 ESLNLSSNFISGKIPEEIVSLKNLKSLVLRDNMFWGFVSDDLRGLSNLQELDLGGNKLGP 193

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTV 239
           + PS   +   LT +++ NN    K+P+ +  L +L  LD                    
Sbjct: 194 EVPSLPSK---LTTVSLKNNSFRSKIPEQIKKLNNLQSLD-------------------- 230

Query: 240 LLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
            LS N F+G+IP+    +  LQ L L  N LSG  P+   +   I  L ++ N+L+G LP
Sbjct: 231 -LSSNEFTGSIPEFLFSIPSLQILSLDQNLLSGSLPNSSCTSSKIITLDVSHNLLTGKLP 289

Query: 300 KDLSCGSKLDSISDKRVVKFGGNCLSY-DTPS---QHKEAFCKETNGSKS--------SR 347
              SC S   S S++ V+ F  NCLS   TP+   Q   +FC +   SK+        ++
Sbjct: 290 ---SCYSS-KSFSNQTVL-FSFNCLSLIGTPNAKYQRPLSFC-QNQASKAIAVEPIPKAK 343

Query: 348 GREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDN---------- 397
            ++   I       +++ V+    +++       K R+ +S       +N          
Sbjct: 344 DKDSARIKLGLVILIIIGVIILAAILVLLVLIALKRRRSRSEDDPFEVNNSNNERHASDK 403

Query: 398 ----APTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSR 453
               + T  SS+ L ++R + Q ++    G P YR F LEEL+EATN+FD+ S   E   
Sbjct: 404 VSVCSTTTASSKSLPDSRRVPQTMRSAVIGLPPYRVFSLEELEEATNDFDAASLFCE--- 460

Query: 454 GKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD 513
            +LY+G L  G  V +R +   +K   Q+L  +++ LSKL+H HLVS+LGH I S    +
Sbjct: 461 -QLYRGCLREGIPVTVRVIKLKQKSLPQSLAQQMEVLSKLRHMHLVSVLGHSIASNQDHN 519

Query: 514 SNT-NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSF 572
            +  + +F+V EYI +GS R  L+    + VLKW  R+AI IGVA+ + FLH  V  G F
Sbjct: 520 QHAGHTIFIVQEYISSGSLRDFLTNCRKKEVLKWPQRMAIAIGVARGIQFLHMGVAPGIF 579

Query: 573 SNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVI 632
            N L   NI+LDE    K+S Y I +  +  E      E P+A+       R++ +    
Sbjct: 580 GNNLKIENIMLDETLTVKISGYTIPLPSKVGE------ERPQAKKP-----RSNED---- 624

Query: 633 VVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ--DGRR------- 683
                  + ++DVY FG ILL+     I+TGK  A   +EM S   Q  +G R       
Sbjct: 625 -------REKEDVYQFGVILLQ-----IITGKVVAAGSSEMGSLKLQLENGLRDEPSVLS 672

Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ 734
            + DP V  + + ESL   V     C+C + S RPS EDV+WNLQY  QVQ
Sbjct: 673 SLADPSVKGSYAYESLRTTVEFAINCLCEDQSKRPSIEDVVWNLQYTIQVQ 723

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  211 bits (537), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 182/643 (28%), Positives = 301/643 (46%), Gaps = 68/643 (10%)

Query: 108  GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
            GP+P+++     L  + +S+N L G IP+ +SRL  L  L +  N    ++P    +   
Sbjct: 594  GPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLK 653

Query: 168  LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLREN--- 223
            L  L+L +NQL G  P S   + +L  + ++ N+L G +P  +  L  L  +DL  N   
Sbjct: 654  LQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLS 713

Query: 224  -KLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP 282
             +L S L  M K LV + + +N F+G IP + G L QL++LD+S N LSG  P+ +  LP
Sbjct: 714  GELSSELSTMEK-LVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLP 772

Query: 283  NISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNG 342
            N+ +L+LA N L G +P D  C        D       GN           +  C    G
Sbjct: 773  NLEFLNLAKNNLRGEVPSDGVC-------QDPSKALLSGN-----------KELCGRVVG 814

Query: 343  S----KSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNA 398
            S    + ++ R    IA +  G  +++ +  F +    +R     R +Q   P+ ++++ 
Sbjct: 815  SDCKIEGTKLRSAWGIAGLMLGFTIIVFVFVFSL----RRWAMTKRVKQRDDPERMEESR 870

Query: 399  PTGVSSE---VLANARLISQ-AVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRG 454
              G   +    L+ +R     ++ +     P  +   L ++ EAT++F   + +G+G  G
Sbjct: 871  LKGFVDQNLYFLSGSRSREPLSINIAMFEQPLLKV-RLGDIVEATDHFSKKNIIGDGGFG 929

Query: 455  KLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS 514
             +YK  L     VA++ L+  K    +     ++ L K++HP+LVSLLG+C        S
Sbjct: 930  TVYKACLPGEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYC--------S 981

Query: 515  NTNKVFLVYEYIPNGSYRAHL-SENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFS 573
             + +  LVYEY+ NGS    L ++     VL WS RL I +G A+ + FLH   I     
Sbjct: 982  FSEEKLLVYEYMVNGSLDHWLRNQTGMLEVLDWSKRLKIAVGAARGLAFLHHGFIPHIIH 1041

Query: 574  NRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKARYGFLFICRTSAENV 630
              +  +NILLD     K++D+G++ ++   E H      G        F +I     ++ 
Sbjct: 1042 RDIKASNILLDGDFEPKVADFGLARLISACESHVSTVIAGT-------FGYIPPEYGQSA 1094

Query: 631  VIVVDIQRTKLEDDVYNFGFILLESLVGPIVTG----KGEAFLLNEMASFGSQDGRR-RI 685
                   R   + DVY+FG ILLE + G   TG    + E   L   A      G+   +
Sbjct: 1095 -------RATTKGDVYSFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQKINQGKAVDV 1147

Query: 686  VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
            +DP++++   + S   ++ I   C+   P+ RP+  DVL  L+
Sbjct: 1148 IDPLLVSVALKNSQLRLLQIAMLCLAETPAKRPNMLDVLKALK 1190

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  195 bits (495), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 177/651 (27%), Positives = 292/651 (44%), Gaps = 75/651 (11%)

Query: 108  GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
            G +P  + ++  L LLDMSSN L G IP  +    +L  + ++ NF    +P W   LS 
Sbjct: 613  GKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQ 672

Query: 168  LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLD 226
            L  L L SNQ     P+ +     L  +++  N L+G +P ++  L +L+VL+L +N+  
Sbjct: 673  LGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFS 732

Query: 227  SGLP-LMPK--GLVTVLLSRNLFSGAIPQQFGELAQLQH-LDLSFNDLSGIPPSVLFSLP 282
              LP  M K   L  + LSRN  +G IP + G+L  LQ  LDLS+N+ +G  PS + +L 
Sbjct: 733  GSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLS 792

Query: 283  NISYLHLASNMLSGTLPKDL--------------SCGSKLD-SISDKRVVKFGGNCLSYD 327
             +  L L+ N L+G +P  +              + G KL    S      F GN     
Sbjct: 793  KLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCG 852

Query: 328  TPSQHKEAFCKETNGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQ 387
            +P        +  N  +    R + +I+AI+        L+A G++I       K R + 
Sbjct: 853  SPLSRCNR-VRSNNKQQGLSARSVVIISAIS-------ALTAIGLMILVIALFFKQRHDF 904

Query: 388  STRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRT------FYLEELKEATNN 441
              +          G  S    ++   SQA        P +R          E++ EAT+N
Sbjct: 905  FKK---------VGHGSTAYTSSSSSSQATH-----KPLFRNGASKSDIRWEDIMEATHN 950

Query: 442  FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVS 500
                  +G G  GK+YK  LENG  VA++ + +     S ++    +  L +++H HLV 
Sbjct: 951  LSEEFMIGSGGSGKVYKAELENGETVAVKKILWKDDLMSNKSFSREVKTLGRIRHRHLVK 1010

Query: 501  LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-----ENVLKWSDRLAILIG 555
            L+G+C  S   +  N     L+YEY+ NGS    L E+ P     + +L W  RL I +G
Sbjct: 1011 LMGYC--SSKSEGLN----LLIYEYMKNGSIWDWLHEDKPVLEKKKKLLDWEARLRIAVG 1064

Query: 556  VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
            +A+ V +LH   +       + ++N+LLD +  A L D+G++ ++ E+            
Sbjct: 1065 LAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDTNTDSN---- 1120

Query: 616  RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK---GEAFLLNE 672
                 F C            ++ T+ + DVY+ G +L+E + G + T      E  ++  
Sbjct: 1121 ---TWFACSYGYIAPEYAYSLKATE-KSDVYSMGIVLMEIVTGKMPTDSVFGAEMDMVRW 1176

Query: 673  MASFGSQDG--RRRIVDPVV--LTTCSQESLSIVVSITNKCICPEPSSRPS 719
            + +     G  R +++DP +  L    +++   V+ I  +C    P  RPS
Sbjct: 1177 VETHLEVAGSARDKLIDPKLKPLLPFEEDAACQVLEIALQCTKTSPQERPS 1227

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  190 bits (482), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 184/673 (27%), Positives = 302/673 (44%), Gaps = 87/673 (12%)

Query: 90   LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
            L + T L  L L      G +P    ++S L LLD+S N L G IP  +    +L  + +
Sbjct: 596  LGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDL 655

Query: 150  DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-D 208
            + N+    +P W   L  L  L L SN+  G  P+ I  +  +  + +  N L+G +P +
Sbjct: 656  NNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQE 715

Query: 209  MSALTSLHVLDLRENKLDSGLPLMPKGLVTVL---LSRNLFSGAIPQQFGELAQLQH-LD 264
            +  L +L+ L+L EN+L   LP     L  +    LSRN  +G IP + G+L  LQ  LD
Sbjct: 716  IGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALD 775

Query: 265  LSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC---------------GSKLD 309
            LS+N+ +G  PS + +LP +  L L+ N L G +P  +                 G    
Sbjct: 776  LSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK 835

Query: 310  SISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSKSSRG---REIGLIAAI-AFGAVLVL 365
              S  +   F GN     +P  H    C    GSK+ R    + + +I+AI +  A+ ++
Sbjct: 836  QFSRWQADAFVGNAGLCGSPLSH----CNRA-GSKNQRSLSPKTVVIISAISSLAAIALM 890

Query: 366  VLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSP 425
            VL    +I++ K        +     K V+       S+   + A L S           
Sbjct: 891  VLV---IILFFK--------QNHDLFKKVRGGNSAFSSNSSSSQAPLFSNG--------G 931

Query: 426  AYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLK 484
            A      +++ EAT+  +    +G G  GK+YK  L+NG  +A++ + +     S ++  
Sbjct: 932  AKSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKILWKDDLMSNKSFN 991

Query: 485  VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY--RAHLSENCPEN 542
              +  L  ++H HLV L+G+C  S   D  N     L+YEY+ NGS     H +EN  + 
Sbjct: 992  REVKTLGTIRHRHLVKLMGYC--SSKADGLN----LLIYEYMANGSVWDWLHANENTKKK 1045

Query: 543  -VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
             VL W  RL I +G+A+ V +LH   +       + ++N+LLD +  A L D+G++ I+ 
Sbjct: 1046 EVLGWETRLKIALGLAQGVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAHLGDFGLAKILT 1105

Query: 602  EHEKLEAKGEGPKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             +     +     A  YG++     + E    +   +++    DVY+ G +L+E     I
Sbjct: 1106 GNYDTNTESNTMFAGSYGYI-----APEYAYSLKATEKS----DVYSMGIVLME-----I 1151

Query: 661  VTGK--GEAFLLNE----------MASFGSQDGRRRIVDPVV--LTTCSQESLSIVVSIT 706
            VTGK   EA    E          + +    + R +++D  +  L  C +E+   V+ I 
Sbjct: 1152 VTGKMPTEAMFDEETDMVRWVETVLDTPPGSEAREKLIDSELKSLLPCEEEAAYQVLEIA 1211

Query: 707  NKCICPEPSSRPS 719
             +C    P  RPS
Sbjct: 1212 LQCTKSYPQERPS 1224

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  183 bits (465), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 170/626 (27%), Positives = 274/626 (43%), Gaps = 94/626 (15%)

Query: 106  IWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSL 165
            I G +P +I  ++ L  LD+S+N LFG +P  I  L  L  L ++ N     VP     L
Sbjct: 570  ITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFL 629

Query: 166  SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKL 225
            +NL  L L SN    + P +      L D+ +S N+  G +P +S LT L  LDL  N+L
Sbjct: 630  TNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRLSKLTQLTQLDLSHNQL 689

Query: 226  DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
            D                     G IP Q   L  L  LDLS N+LSG+ P+    +  ++
Sbjct: 690  D---------------------GEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALT 728

Query: 286  YLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSKS 345
             + +++N L G LP D     K  + +D      G   L  + P Q  +  C+E    K 
Sbjct: 729  NVDISNNKLEGPLP-DTPTFRK--ATADALEENIG---LCSNIPKQRLKP-CRELKKPKK 781

Query: 346  SRGREIGLIAAIAFGAVLVLVLSAFGVIIYC--KRCCTKGRQEQSTRPKIVQDNAPTGVS 403
            +    + ++  I  G +++L + A     YC  KR    GR   +T P            
Sbjct: 782  NGNLVVWILVPI-LGVLVILSICA-NTFTYCIRKRKLQNGR---NTDP------------ 824

Query: 404  SEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLEN 463
             E   N  + S   K           F  +++ E+TN FD    +G G   K+Y+  L++
Sbjct: 825  -ETGENMSIFSVDGK-----------FKYQDIIESTNEFDPTHLIGTGGYSKVYRANLQD 872

Query: 464  GTYVAIRSLTFLKKYSIQNLKVRLDF------LSKLQHPHLVSLLGHCIESGSQDDSNTN 517
             T +A++ L       I    V+ +F      L++++H ++V L G C        S+  
Sbjct: 873  -TIIAVKRLHDTIDEEISKPVVKQEFLNEVKALTEIRHRNVVKLFGFC--------SHRR 923

Query: 518  KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLT 577
              FL+YEY+  GS    L+ +     L W+ R+ ++ GVA A+ ++H   I+      ++
Sbjct: 924  HTFLIYEYMEKGSLNKLLANDEEAKRLTWTKRINVVKGVAHALSYMHHDRITPIVHRDIS 983

Query: 578  TNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ 637
            + NILLD    AK+SD+G + +++      +        YG++      A      + + 
Sbjct: 984  SGNILLDNDYTAKISDFGTAKLLKTD---SSNWSAVAGTYGYV------APEFAYTMKVT 1034

Query: 638  RTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF-GSQDGRRRIVDPVVLTTCSQ 696
                + DVY+FG ++LE     ++ GK    L++ ++S  G     R I D  VL    Q
Sbjct: 1035 E---KCDVYSFGVLILE-----LIIGKHPGDLVSSLSSSPGEALSLRSISDERVLEPRGQ 1086

Query: 697  --ESLSIVVSITNKCICPEPSSRPSF 720
              E L  +V +   C+   P SRP+ 
Sbjct: 1087 NREKLLKMVEMALLCLQANPESRPTM 1112

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  183 bits (464), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 185/693 (26%), Positives = 292/693 (42%), Gaps = 98/693 (14%)

Query: 108  GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
            G LP+ I + +++  + +SSN L G IP GI +L +L  L +  N    N+P    +  N
Sbjct: 489  GSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKN 548

Query: 168  LTVLSLKSNQLKGQFPSSICRIATLT--------DIAMSNNEL------SGKLPDMSALT 213
            L  L L SN L G  P  +   A L           A   NE       +G L +   + 
Sbjct: 549  LIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIR 608

Query: 214  -------------------------------SLHVLDLRENKLDSGLPLM--PKGLVTVL 240
                                           S+  LDL  N +   +PL     G + VL
Sbjct: 609  AERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVL 668

Query: 241  -LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
             L  NL +G IP  FG L  +  LDLS NDL G  P  L  L  +S L +++N L+G +P
Sbjct: 669  NLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP 728

Query: 300  KDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSKSSRGREIGLIAAIAF 359
                 G +L +    R     G C     P     +    ++     +    G+ A I F
Sbjct: 729  ----FGGQLTTFPLTRYANNSGLC-GVPLPPCSSGSRPTRSHAHPKKQSIATGMSAGIVF 783

Query: 360  GAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKL 419
              + +++L    + +Y  R   K ++++  R K ++ + PT  SS    ++     ++ +
Sbjct: 784  SFMCIVMLI---MALYRAR---KVQKKEKQREKYIE-SLPTSGSSSWKLSSVHEPLSINV 836

Query: 420  GTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS 479
             T   P  R      L EATN F + S +G G  G +YK +L +G+ VAI+ L  +    
Sbjct: 837  ATFEKP-LRKLTFAHLLEATNGFSADSMIGSGGFGDVYKAKLADGSVVAIKKLIQVTGQG 895

Query: 480  IQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
             +     ++ + K++H +LV LLG+C + G +         LVYEY+  GS    L E  
Sbjct: 896  DREFMAEMETIGKIKHRNLVPLLGYC-KIGEER-------LLVYEYMKYGSLETVLHEKT 947

Query: 540  PEN--VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
             +    L WS R  I IG A+ + FLH S I       + ++N+LLD+  +A++SD+G++
Sbjct: 948  KKGGIFLDWSARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDQDFVARVSDFGMA 1007

Query: 598  II---MEEHEKLEAKGEGP---KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
             +   ++ H  +      P      Y   F C                    DVY++G I
Sbjct: 1008 RLVSALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKG----------------DVYSYGVI 1051

Query: 652  LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRR----IVDPVVLTTCSQE-SLSIVVSIT 706
            LLE L G       E    N +  +  Q  R +    I+DP ++T  S +  L   + I 
Sbjct: 1052 LLELLSGKKPIDPEEFGEDNNLVGWAKQLYREKRGAEILDPELVTDKSGDVELLHYLKIA 1111

Query: 707  NKCICPEPSSRPSFEDVLWNLQYAAQVQATADA 739
            ++C+   P  RP+   V+   +   QV    D+
Sbjct: 1112 SQCLDDRPFKRPTMIQVMTMFKELVQVDTENDS 1144

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 191/712 (26%), Positives = 318/712 (44%), Gaps = 107/712 (15%)

Query: 92  RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT 151
           +L  LR LSL    + G +P  +  + +L  + + +N L G+IP+ +     LQTL +  
Sbjct: 123 QLQALRKLSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASLGVSHFLQTLDLSN 182

Query: 152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-- 209
           N   + +P      S L  L+L  N L GQ P S+ R ++L  +A+ +N LSG + D   
Sbjct: 183 NLLSEIIPPNLADSSKLLRLNLSFNSLSGQIPVSLSRSSSLQFLALDHNNLSGPILDTWG 242

Query: 210 SALTSLHVLDLRENKLDSGLPL---------------------MPKGLVTVL------LS 242
           S   +L VL L  N L    P                      +P  L  +       +S
Sbjct: 243 SKSLNLRVLSLDHNSLSGPFPFSLCNLTQLQDFSFSHNRIRGTLPSELSKLTKLRKMDIS 302

Query: 243 RNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
            N  SG IP+  G ++ L HLDLS N L+G  P  +  L ++++ +++ N LSG +P  L
Sbjct: 303 GNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPISISDLESLNFFNVSYNNLSGPVPTLL 362

Query: 303 SCGSKLDSISDKRVVKFGGNCL----SYDTPSQHKEAFCKETNGSKSSRGREIGLIAAIA 358
           S   K +S S      F GN L    S  TP     +   E     S R      I  IA
Sbjct: 363 S--QKFNSSS------FVGNSLLCGYSVSTPCPTLPSPSPEKERKPSHRNLSTKDIILIA 414

Query: 359 FGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVK 418
            GA+L+++L     I+ C  CC   ++   T+ K   +  P  V+++         +A  
Sbjct: 415 SGALLIVML-----ILVCVLCCLLRKKANETKAK-GGEAGPGAVAAKTEKGG----EAEA 464

Query: 419 LGTQGSPAYR-----TFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLT 473
            G  G           F  ++L  AT        MG+ + G +YK  LE+G+ VA++ L 
Sbjct: 465 GGETGGKLVHFDGPMAFTADDLLCAT-----AEIMGKSTYGTVYKATLEDGSQVAVKRLR 519

Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
                S +  +  ++ L +++HP+L++L  + +    +         +V++Y+  GS   
Sbjct: 520 EKITKSQKEFENEINVLGRIRHPNLLALRAYYLGPKGEK-------LVVFDYMSRGSLAT 572

Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFL--HSSVISGSFSNRLTTNNILLDEHRIAKL 591
            L    P+  + W  R++++ G+A+ + +L  H+++I G+    LT++N+LLDE+  AK+
Sbjct: 573 FLHARGPDVHINWPTRMSLIKGMARGLFYLHTHANIIHGN----LTSSNVLLDENITAKI 628

Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
           SDYG+S +M       A G    A  G L            +  +++   + DVY+ G I
Sbjct: 629 SDYGLSRLMT-----AAAGSSVIATAGAL------GYRAPELSKLKKANTKTDVYSLGVI 677

Query: 652 LLESLVGPIVTGKGEAFLLNE------MASFGSQDGRRRIVDPVVL---TTCSQESLSIV 702
           +LE     ++TGK  +  LN       +A+   ++    + D  +L    T   E L+  
Sbjct: 678 ILE-----LLTGKSPSEALNGVDLPQWVATAVKEEWTNEVFDLELLNDVNTMGDEILN-T 731

Query: 703 VSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATA-------DADQKSDSTS 747
           + +   C+   PS+RP  + V+  L      + TA       D  + S STS
Sbjct: 732 LKLALHCVDATPSTRPEAQQVMTQLGEIRPEETTATTSEPLIDVPEASASTS 783

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  177 bits (449), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 175/687 (25%), Positives = 293/687 (42%), Gaps = 109/687 (15%)

Query: 77   LSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPS 136
            LS++F  +     +T    L +L+L + G+ G +P  +     LE+LD+S N  +G IP 
Sbjct: 409  LSKNFIGEEIPNNVTGFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPH 468

Query: 137  GISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS---------------LKSNQLKGQ 181
             I ++  L  +    N     +P     L NL  L+               +K N+    
Sbjct: 469  WIGKMESLFYIDFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSSNG 528

Query: 182  FP-SSICRIATLTDIAMSNNELSGK-LPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTV 239
             P + + R      I ++NN L+G  LP++  L  LH+LD                    
Sbjct: 529  LPYNQVSRFP--PSIYLNNNRLNGTILPEIGRLKELHMLD-------------------- 566

Query: 240  LLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
             LSRN F+G IP     L  L+ LDLS+N L G  P    SL  +S   +A N L+G +P
Sbjct: 567  -LSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIP 625

Query: 300  KDLSCGSKLDSISDKRVVKFGGNCLSYDTPS--------QHKEAFCKETNGSKSSRGREI 351
                 G +  S          G C + D+P           K +  +  NG K  R   +
Sbjct: 626  S----GGQFYSFPHSSFEGNLGLCRAIDSPCDVLMSNMLNPKGSSRRNNNGGKFGRSSIV 681

Query: 352  GLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANAR 411
             L  ++A G  L+L +    +           R++   R   V +   +GV S+ L  ++
Sbjct: 682  VLTISLAIGITLLLSVILLRI----------SRKDVDDRINDVDEETISGV-SKALGPSK 730

Query: 412  LISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRS 471
            ++          S   +   +EEL ++TNNF   + +G G  G +YK    +G+  A++ 
Sbjct: 731  IV-------LFHSCGCKDLSVEELLKSTNNFSQANIIGCGGFGLVYKANFPDGSKAAVKR 783

Query: 472  LTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY 531
            L+       +  +  ++ LS+ +H +LVSL G+C         + N   L+Y ++ NGS 
Sbjct: 784  LSGDCGQMEREFQAEVEALSRAEHKNLVSLQGYC--------KHGNDRLLIYSFMENGSL 835

Query: 532  RAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK 590
               L E    N+ L W  RL I  G A+ + +LH           + ++NILLDE   A 
Sbjct: 836  DYWLHERVDGNMTLIWDVRLKIAQGAARGLAYLHKVCEPNVIHRDVKSSNILLDEKFEAH 895

Query: 591  LSDYGISIIM---EEHEKLEAKGE----GPKARYGFLFICRTSAENVVIVVDIQRTKLED 643
            L+D+G++ ++   + H   +  G      P+     +  CR                   
Sbjct: 896  LADFGLARLLRPYDTHVTTDLVGTLGYIPPEYSQSLIATCR------------------G 937

Query: 644  DVYNFGFILLESLVG--PIVTGKGEAF--LLNEMASFGSQDGRRRIVDPVVLTTCSQESL 699
            DVY+FG +LLE + G  P+   KG++   L++ +    ++     ++D  +    ++ ++
Sbjct: 938  DVYSFGVVLLELVTGRRPVEVCKGKSCRDLVSRVFQMKAEKREAELIDTTIRENVNERTV 997

Query: 700  SIVVSITNKCICPEPSSRPSFEDVL-W 725
              ++ I  KCI  EP  RP  E+V+ W
Sbjct: 998  LEMLEIACKCIDHEPRRRPLIEEVVTW 1024

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	747
147788411	773	hypothetical protein VITISV_008739 [Viti	0.971	0.939	0.685	0.0
255536961	769	leucine-rich repeat protein, putative [R	0.970	0.942	0.695	0.0
449441678	767	PREDICTED: probable inactive leucine-ric	0.970	0.945	0.621	0.0
449490328	767	PREDICTED: probable inactive leucine-ric	0.970	0.945	0.621	0.0
356570123	808	PREDICTED: probable inactive leucine-ric	0.967	0.894	0.634	0.0
356514133	764	PREDICTED: probable inactive leucine-ric	0.963	0.942	0.622	0.0
357503851	768	Receptor protein kinase-like protein [Me	0.961	0.934	0.620	0.0
225456272	770	PREDICTED: probable inactive leucine-ric	0.969	0.940	0.603	0.0
356558743	764	PREDICTED: probable inactive leucine-ric	0.967	0.946	0.637	0.0
297811543	812	hypothetical protein ARALYDRAFT_488255 [	1.0	0.919	0.588	0.0

>gi|147788411|emb|CAN69961.1| hypothetical protein VITISV_008739 [Vitis vinifera]

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/769 (68%), Positives = 620/769 (80%), Gaps = 43/769 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           +Q+SQTQ LLQLRKHLEYP  L+IW NY GD CNL ST H++ITCQDNSV+ LKIMGDK 
Sbjct: 24  MQSSQTQALLQLRKHLEYPXALEIWENYSGDFCNLASTPHMAITCQDNSVSELKIMGDKH 83

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
           VK  + ++G  +PN+TLS+ FSIDSFVTTL+RL+ LRVLSLVSLGIWGPLPDKIHRL+ L
Sbjct: 84  VKV-SDFSGFAVPNETLSDGFSIDSFVTTLSRLSGLRVLSLVSLGIWGPLPDKIHRLALL 142

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E+LD+SSNF+FG+IP  +S LV+LQTLT+D NFF+D+VPDW DSLSNL+ LSL++N+ KG
Sbjct: 143 EVLDLSSNFMFGSIPPKVSTLVKLQTLTLDANFFNDSVPDWMDSLSNLSSLSLRNNRFKG 202

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
           QFP SI RIATLTD+A+S+NELSGKLPD+S+LT+LHVLDLR+N LDS LP+MPKGLVT L
Sbjct: 203 QFPPSISRIATLTDVALSHNELSGKLPDLSSLTNLHVLDLRDNHLDSELPIMPKGLVTAL 262

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS N FSG IP Q GELAQLQHLDLSFN L+G PPS LFS+ NISYL+LASNMLSG+LP 
Sbjct: 263 LSENSFSGEIPAQLGELAQLQHLDLSFNSLTGTPPSALFSMANISYLNLASNMLSGSLPD 322

Query: 301 DLSCGSKLDSI------------------SDKRVVKFGGNCLSYDTPSQHKEAFCKETN- 341
            LSCG +L  +                  SD+RVVKFGGNC S D   QH+E++CK  + 
Sbjct: 323 GLSCGDELGFVDISSNKLMGVLPSCLSIASDRRVVKFGGNCFSIDAQHQHQESYCKAAHI 382

Query: 342 GSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRC---CTKGRQEQSTRPKIVQDNA 398
             K S+G+EIG++     GAV+++   AF + I C+RC    ++G  EQ   PK+ Q+N+
Sbjct: 383 KGKQSKGKEIGVLLGAIAGAVIIVAFLAFVLFILCRRCRKYPSRGSFEQPAMPKLAQENS 442

Query: 399 PTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYK 458
            TG+S E+LANAR ISQA KLGTQGSP YR F LEELK+ATNNFD ++F+GEGS GKLYK
Sbjct: 443 STGISPELLANARFISQAAKLGTQGSPTYRLFSLEELKDATNNFDPMTFLGEGSIGKLYK 502

Query: 459 GRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK 518
           G+LENG YV IR++T  +KYSI+NLK+RLD LSKL+HPHLVSLLGHCI+ G QDDSN ++
Sbjct: 503 GKLENGAYVGIRTITLYRKYSIRNLKLRLDLLSKLRHPHLVSLLGHCIDGGGQDDSNVDR 562

Query: 519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTT 578
            FL+YEY+PNG+Y  HLSENCP  VLKWSDRLA+LIGVAKAVHFLH+ VI GSF+NRL T
Sbjct: 563 FFLIYEYMPNGNYHTHLSENCPAKVLKWSDRLAVLIGVAKAVHFLHTGVIPGSFNNRLKT 622

Query: 579 NNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR 638
           NNILLDEHRIAKLSDYG+SIIMEE+EK++AK EG K                      QR
Sbjct: 623 NNILLDEHRIAKLSDYGMSIIMEENEKVDAKKEGGKPW--------------------QR 662

Query: 639 TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQES 698
            +LEDDVYNFGFILLESLVGPIVTGKGE FLLNEMASFGSQDGR+RIVDP+VLTT SQES
Sbjct: 663 KQLEDDVYNFGFILLESLVGPIVTGKGETFLLNEMASFGSQDGRKRIVDPIVLTTSSQES 722

Query: 699 LSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS 747
           LSIVVSIT+KC+ PEPS+RPSFEDVLWNLQYAAQVQATADADQKSD  S
Sbjct: 723 LSIVVSITSKCVSPEPSTRPSFEDVLWNLQYAAQVQATADADQKSDGAS 771

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536961|ref|XP_002509547.1| leucine-rich repeat protein, putative [Ricinus communis] gi|223549446|gb|EEF50934.1| leucine-rich repeat protein, putative [Ricinus communis]

 Score = 1049 bits (2713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/766 (69%), Positives = 609/766 (79%), Gaps = 41/766 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQT Q Q+LLQ+RKHLEYPS LDIWG+Y G+ CNL ST ++SI C+DN +T LKI GDK 
Sbjct: 24  LQTYQYQLLLQVRKHLEYPSQLDIWGSYSGEPCNLPSTLYMSIICKDNVITELKIKGDKI 83

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
           VK  + +NG  IP  TLS+SFSIDS VTTL RLT+LRV+SLVSLGIWGPLPDKIHRL SL
Sbjct: 84  VKV-SDFNGFAIPGPTLSQSFSIDSLVTTLARLTSLRVVSLVSLGIWGPLPDKIHRLYSL 142

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E LD+SSNFLFG++P  I+RLV+L +L +D N+F+ ++PDW DSLSNLTVLSLK+N+ KG
Sbjct: 143 EFLDLSSNFLFGSVPPQIARLVKLNSLVLDGNYFNGSIPDWLDSLSNLTVLSLKNNRFKG 202

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
           QFPSSICRI+TLTDIA  +N+L+G LPD+SALTSLHVLDLREN LDS LP MPKGL+T+L
Sbjct: 203 QFPSSICRISTLTDIAFCHNQLTGTLPDLSALTSLHVLDLRENNLDSDLPTMPKGLITIL 262

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS N FSG I  QF +L+QLQHLDLS N LSG PPS LFSLPNI YL+LASNMLSG+LP 
Sbjct: 263 LSNNSFSGKIRAQFDQLSQLQHLDLSLNRLSGTPPSSLFSLPNIRYLNLASNMLSGSLPD 322

Query: 301 DLSCGSKLD------------------SISDKRVVKFGGNCLSYDTPSQHKEAFCKETN- 341
            LSCGS L                   S+S+KR +KFGGNCLS +   QH+E +C+E N 
Sbjct: 323 HLSCGSNLGFVDISTNKFIGGLPSCLGSMSNKRAIKFGGNCLSINGQYQHQEPYCEEANI 382

Query: 342 GSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTG 401
            +K SRGR +G + A+  GAVLV+VL A GV+ +C+R  ++   EQ+   K VQDNAPT 
Sbjct: 383 EAKQSRGRAVGTLVAVIGGAVLVMVLVALGVLFFCRRYSSRRTFEQNIFAKAVQDNAPTA 442

Query: 402 VSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRL 461
           VSSEVLANAR ISQ  KLGTQG+P +R F  EEL EATNNFDS +FMGEGS GK+Y+GRL
Sbjct: 443 VSSEVLANARFISQTAKLGTQGAPVHRVFSFEELTEATNNFDSSTFMGEGSIGKIYRGRL 502

Query: 462 ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL 521
           ENGT VAIRSLT LKK SIQNLKVRLD LSKL HPHLV LLG+CI+S   DD +  KVFL
Sbjct: 503 ENGTNVAIRSLTLLKKNSIQNLKVRLDLLSKLHHPHLVGLLGYCIDSCGLDDLSGIKVFL 562

Query: 522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI 581
           +YEY+ NG+YRAHLSE CPE VLKWS RLAILIGVAKAVHFLH+ VI G+ +NRL TNNI
Sbjct: 563 IYEYVSNGNYRAHLSETCPEKVLKWSHRLAILIGVAKAVHFLHTGVIPGTLNNRLKTNNI 622

Query: 582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL 641
           LLDEHRIAKLSDYG++++ EE EKLE           FL      A N     D+  T L
Sbjct: 623 LLDEHRIAKLSDYGMAVMTEEIEKLEV----------FL------AAN-----DVNLTNL 661

Query: 642 EDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSI 701
           EDDVYNFGF+LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSI
Sbjct: 662 EDDVYNFGFVLLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSI 721

Query: 702 VVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS 747
           VVSIT+KCI PEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS
Sbjct: 722 VVSITSKCISPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS 767

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441678|ref|XP_004138609.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Cucumis sativus]

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/766 (62%), Positives = 578/766 (75%), Gaps = 41/766 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQTSQTQ+LLQ+RKHLE+PS L++   ++GDLCN++ + +++I CQDN VT L I GDKP
Sbjct: 24  LQTSQTQILLQIRKHLEFPSSLEVMDAFDGDLCNVSPSRNMTIACQDNVVTELIIKGDKP 83

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
             +   +NG PI NQTLSE FS+DSFVTTL+RL++LRVL L+SLGIWG LPDKIHRLSSL
Sbjct: 84  F-DFKGFNGLPILNQTLSERFSMDSFVTTLSRLSSLRVLGLISLGIWGQLPDKIHRLSSL 142

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E LD+SSN+++G IP  IS +V+L +L +D NFF+D VPDW DSL+NLT LSLKSN+LKG
Sbjct: 143 EFLDLSSNYIYGQIPPKISTMVQLYSLVLDANFFNDTVPDWIDSLTNLTFLSLKSNRLKG 202

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
           QFPSS+C+I TL D+ +S+NE+SG+LPD+SAL +LHVLD+RENKL+S LP+MPKGLVT+L
Sbjct: 203 QFPSSLCKIRTLADVYLSHNEISGELPDLSALANLHVLDIRENKLNSVLPVMPKGLVTLL 262

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS+N  SG IP+ FG++ QLQHLDLS N L+G PP  LF+LPNI+YL+L+SN++SGTL  
Sbjct: 263 LSKNALSGEIPKHFGQMDQLQHLDLSSNRLTGSPPPFLFNLPNITYLNLSSNLMSGTLQN 322

Query: 301 DLSCGSKLDSI------------------SDKRVVKFGGNCLSYDTPSQHKEAFCKET-N 341
            LSC +KL  +                  SDKR+VKF GNC + +   QH+ + C E+  
Sbjct: 323 PLSCSAKLGDVDISDNKLTGTLPSCLGSSSDKRMVKFSGNCFATNLQHQHEASLCAESLA 382

Query: 342 GSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTG 401
           G+  SR +E  LI A   GA++V+VL A GV    +R C +  QEQ   PK+VQ+++P  
Sbjct: 383 GTGESRRKEKLLIVAFISGAIIVIVLLALGVFFLYRRLCKRTVQEQPVPPKVVQESSPAT 442

Query: 402 VSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRL 461
           V SE+LANARLISQA+KLG Q  P  R+F  +EL+EAT NFD    +GEGS GKLY+G+L
Sbjct: 443 VPSELLANARLISQAMKLGAQTVPVCRSFSFQELREATKNFDKSMLLGEGSIGKLYRGKL 502

Query: 462 ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL 521
           ENGT VAIR L   KKYS+QNLKVRLD LSKL HPHLV L GHC+E    D+SN N+V L
Sbjct: 503 ENGTLVAIRCLVLSKKYSVQNLKVRLDVLSKLHHPHLVGLFGHCMEGDGHDNSNVNQVLL 562

Query: 522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI 581
           VYEY+ N +YR  LSE  PE VLKWSDRL ILIGVAKA+HFLH+ VI GSF+N L TNNI
Sbjct: 563 VYEYVSNRNYRTLLSETFPEKVLKWSDRLTILIGVAKAIHFLHTGVIPGSFNNGLKTNNI 622

Query: 582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL 641
           LLDEHRI KLSDYG+SII EE EK E KGE  K+R                     R  +
Sbjct: 623 LLDEHRIPKLSDYGMSIITEESEKHETKGESTKSR---------------------RNLV 661

Query: 642 EDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSI 701
           E+DVYNFG+ILLESLVGPIVTGK E FLLN+MASFGS DGRRRIVDPVVL T SQESLS 
Sbjct: 662 ENDVYNFGYILLESLVGPIVTGKEETFLLNDMASFGSTDGRRRIVDPVVLITSSQESLSR 721

Query: 702 VVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS 747
           V+SIT KCI  + +SRPSFEDVLWNLQYAAQVQA+ADA+QKSDS S
Sbjct: 722 VISITKKCISLDAASRPSFEDVLWNLQYAAQVQASADAEQKSDSAS 767

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490328|ref|XP_004158572.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Cucumis sativus]

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/766 (62%), Positives = 577/766 (75%), Gaps = 41/766 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQTSQTQ+LLQ+RKHLE+PS L++   ++GDLCN++ + +++I CQDN VT L I GDKP
Sbjct: 24  LQTSQTQILLQIRKHLEFPSSLEVMDAFDGDLCNVSPSRNMTIACQDNVVTELIIKGDKP 83

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
             +   +NG PI NQTLSE FS+DSFVTTL+RL++LRVL L+SLGIWG LPDKIHRLSSL
Sbjct: 84  F-DFKGFNGLPILNQTLSERFSMDSFVTTLSRLSSLRVLGLISLGIWGQLPDKIHRLSSL 142

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E LD+SSN+++G IP  IS +V+L +L +D NFF+D VPDW DSL+NLT LSLKSN+LKG
Sbjct: 143 EFLDLSSNYIYGQIPPKISTMVQLYSLVLDGNFFNDTVPDWIDSLTNLTFLSLKSNRLKG 202

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
           QFPSS+C+I TL D+ +S+NE+SG+LPD+SAL +LHVLD+RENKL+S LP+MPKGLVT+L
Sbjct: 203 QFPSSLCKIRTLADVYLSHNEISGELPDLSALANLHVLDIRENKLNSVLPVMPKGLVTLL 262

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS+N  SG IP+ FG++ QLQHLDLS N L+G PP  LF+LPNI+YL+L+SN++SGTL  
Sbjct: 263 LSKNALSGEIPKHFGQMDQLQHLDLSSNRLTGSPPPFLFNLPNITYLNLSSNLMSGTLQN 322

Query: 301 DLSCGSKLDSI------------------SDKRVVKFGGNCLSYDTPSQHKEAFCKET-N 341
            LSC +KL  +                  SDKR+VKF GNC + +   QH+ + C E+  
Sbjct: 323 PLSCSAKLGDVDISDNKLTGTLPSCLGSSSDKRMVKFSGNCFATNLQHQHEASLCAESLA 382

Query: 342 GSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTG 401
           G+  SR +E  LI A   GA++V+VL A GV    +R C +  QEQ   PK+VQ+++P  
Sbjct: 383 GTGESRRKEKLLIVAFISGAIIVIVLLALGVFFLYRRLCKRTVQEQPVPPKVVQESSPAT 442

Query: 402 VSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRL 461
           V SE+LANARLISQA+KLG Q  P  R+F  +EL+EAT NFD    +GEGS GKLY+G+L
Sbjct: 443 VPSELLANARLISQAMKLGAQTVPVCRSFSFQELREATKNFDKSMLLGEGSIGKLYRGKL 502

Query: 462 ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL 521
           ENGT VAIR L   KKYS+QNLKVRLD LSKL HPHLV L GHC+E    D+SN N+V L
Sbjct: 503 ENGTLVAIRCLVLSKKYSVQNLKVRLDVLSKLHHPHLVGLFGHCMEGDGHDNSNVNQVLL 562

Query: 522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI 581
           VYEY+ N +YR  LSE  PE VLKWSDRL ILIGVAKA+HFLH+ VI GSF+N L TNNI
Sbjct: 563 VYEYVSNRNYRTLLSETFPEKVLKWSDRLTILIGVAKAIHFLHTGVIPGSFNNGLKTNNI 622

Query: 582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL 641
           LLDEHRI KLSDYG SII EE EK E KGE  K+R                     R  +
Sbjct: 623 LLDEHRIPKLSDYGTSIITEESEKHETKGESTKSR---------------------RNLV 661

Query: 642 EDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSI 701
           E+DVYNFG+ILLESLVGPIVTGK E FLLN+MASFGS DGRRRIVDPVVL T SQESLS 
Sbjct: 662 ENDVYNFGYILLESLVGPIVTGKEETFLLNDMASFGSTDGRRRIVDPVVLITSSQESLSR 721

Query: 702 VVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS 747
           V+SIT KCI  + +SRPSFEDVLWNLQYAAQVQA+ADA+QKSDS S
Sbjct: 722 VISITKKCISLDAASRPSFEDVLWNLQYAAQVQASADAEQKSDSAS 767

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570123|ref|XP_003553240.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max]

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/766 (63%), Positives = 574/766 (74%), Gaps = 43/766 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQ +QTQVLLQLRK+LEYP+ L +W NY  DLC+L  +AHVS+ C+ NSVT LKI+GD+ 
Sbjct: 67  LQLAQTQVLLQLRKYLEYPTSLQMWENYNVDLCSLPPSAHVSLKCEGNSVTELKIIGDRA 126

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
           VK +  +NG  +PN TLS SFSIDSFVTTLTRLT LRVL LVSLGIWGPLPDKIHRLS L
Sbjct: 127 VKVD-KFNGPAVPNHTLSLSFSIDSFVTTLTRLTNLRVLRLVSLGIWGPLPDKIHRLSLL 185

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E+LDMS NFL+G++P  +S +V+L TLT+D N  +  +PDW+DSL+NL+VLSLKSN LKG
Sbjct: 186 EVLDMSLNFLYGSVPPRMSTMVKLHTLTLDGNGLNSTMPDWFDSLTNLSVLSLKSNHLKG 245

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
            FPSS+C+I +L DI++S+NELSG LPD+ AL+ LHVLDLREN LDS LPLMPK +VT+L
Sbjct: 246 SFPSSLCKIRSLVDISLSHNELSGGLPDLIALSGLHVLDLRENHLDSELPLMPKAVVTIL 305

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS+N FSG IP QF EL  LQHLDLS N LS +PPS LFSLPNISYL+LASN LSG+LP+
Sbjct: 306 LSKNSFSGEIPNQFSELGHLQHLDLSSNHLSKMPPSSLFSLPNISYLNLASNELSGSLPQ 365

Query: 301 DLSCGSKLDSI------------------SDKRVVKFGGNCLSYDTPSQHKEAFCKETN- 341
            L+CGSKL  +                  S KRV+K+GGNCLS D+  Q +  +CKE++ 
Sbjct: 366 KLNCGSKLGFVDISSNKLNAGLPSCLANTSGKRVIKYGGNCLSIDSQPQRQGTYCKESSL 425

Query: 342 GSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTG 401
           G K+    +I   AA+A   V+VLVLSAFGV  Y ++  ++        PK VQDN+ TG
Sbjct: 426 GKKNFWKWKIA--AAVAMIIVIVLVLSAFGVFFY-RKYHSREMYRHQMLPKAVQDNSITG 482

Query: 402 VSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRL 461
           VSSEVLA+AR +SQ VKLGTQ +P  R F +EELKE T NFD  +++GEGS GKLYKG+L
Sbjct: 483 VSSEVLASARFVSQVVKLGTQATPTCRQFSIEELKEVTRNFDLSTYIGEGSLGKLYKGKL 542

Query: 462 ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL 521
           ENGTYV IR +   KK SIQNLK RLD LSKL HP+LVSLLGHC++   QDDS+  K+ L
Sbjct: 543 ENGTYVVIRCVALSKKCSIQNLKARLDLLSKLNHPNLVSLLGHCVDGDGQDDSSGLKLHL 602

Query: 522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI 581
           VYEY+ NGSYR HLSE   +  LKWSDRL+ILIGVAKAVHFLH+ VI G F N+L TNNI
Sbjct: 603 VYEYVLNGSYRTHLSEFSSDKGLKWSDRLSILIGVAKAVHFLHTGVIPGCFRNQLKTNNI 662

Query: 582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL 641
           LLDEH I KLSDYG+S+I EE E LEAKGE PK+                     QR KL
Sbjct: 663 LLDEHHIPKLSDYGMSMIAEEIEYLEAKGEYPKS--------------------CQREKL 702

Query: 642 EDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSI 701
           EDDVYNFG IL ESLVGPI + KGE + L+E  SF SQDGR +IVDPVVLTTC  ESLSI
Sbjct: 703 EDDVYNFGLILFESLVGPIASKKGEKYFLDEKTSFDSQDGRIKIVDPVVLTTCCPESLSI 762

Query: 702 VVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS 747
            +SIT KCI PE S+ PSFEDVLWNLQYAAQVQATADA+QKSDSTS
Sbjct: 763 AISITTKCISPESSAPPSFEDVLWNLQYAAQVQATADAEQKSDSTS 808

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514133|ref|XP_003525761.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max]

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/765 (62%), Positives = 576/765 (75%), Gaps = 45/765 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQ +QTQ LLQLR +LEYPS L IW NY  DLC+++ +A++SI C++N +T LKIMG+K 
Sbjct: 24  LQAAQTQALLQLRVYLEYPSSLQIWENYNWDLCSISPSANLSIKCENNEITELKIMGEKS 83

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
            K    +NG  +PNQTLS +FSI SF++TLTRL +LRVLSLVSLGIWGPLPDKIH  SSL
Sbjct: 84  EKPQR-FNGFAVPNQTLSMNFSIVSFLSTLTRLASLRVLSLVSLGIWGPLPDKIHHFSSL 142

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           ++LD+SSNF+FGAIP  IS +V+L  LT+D N+ +  +PDW+DSLSNL +LS+KSN +KG
Sbjct: 143 QVLDLSSNFIFGAIPPKISTMVKLHALTLDDNYLNTTMPDWFDSLSNLNILSVKSNGIKG 202

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
            FPSS+C+I TL  I++S+NEL+G+LPD+ +LT LHVLDLREN+L+S LPL+PK +VTVL
Sbjct: 203 PFPSSLCKIKTLEVISLSHNELAGELPDLGSLTGLHVLDLRENQLESELPLLPKSVVTVL 262

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS N FSG +P+QFGEL QLQHLDLS N LS  PPS LFSLP ISYL+LASN LSG LP 
Sbjct: 263 LSNNSFSGEVPKQFGELDQLQHLDLSSNHLSKTPPSTLFSLPKISYLNLASNALSGALPD 322

Query: 301 DLSCGSKLDSI------------------SDKRVVKFGGNCLSYDTPSQHKEAFCKE-TN 341
            LSCGSKL  +                  SD RVV++ GNCLS D+ +QH+ ++C+E ++
Sbjct: 323 KLSCGSKLGFVDISSNKLSGGLPSCLANTSDGRVVRYAGNCLSVDSQNQHRGSYCRESSS 382

Query: 342 GSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTG 401
           G K+ +  ++    AI  G VLV+++S  GV ++ K+  ++    Q    KIV DN+ TG
Sbjct: 383 GWKNLKTWKVAAAMAIIVGLVLVVMVS--GVFLW-KKYHSRKITGQEVLLKIVHDNSTTG 439

Query: 402 VSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFM--GEGSRGKLYKG 459
           VSSE+LANAR ISQ VKLGTQ +   R F +EELKEAT NFD  +++  G+GS GKL+KG
Sbjct: 440 VSSEILANARFISQTVKLGTQTTSTCRQFSIEELKEATKNFDLSTYIGQGQGSIGKLFKG 499

Query: 460 RLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV 519
           +LENG+Y AIRSL   KK SIQNL+ +LD LSKLQHP+LVSLLGHCI+ G Q+D N++K+
Sbjct: 500 KLENGSYAAIRSLALSKKCSIQNLRAKLDLLSKLQHPNLVSLLGHCIDGGGQEDPNSHKL 559

Query: 520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN 579
            LVYEY+PNG+YR HLSE   +  LKWSDRLAILIGVAKAVHFLH+ VI G FSN+L T 
Sbjct: 560 HLVYEYVPNGNYRTHLSEFSVDKALKWSDRLAILIGVAKAVHFLHTGVIPGCFSNQLKTK 619

Query: 580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT 639
           N+LLDEHRI KLSDYG+SII EE EK EAK E PK R                     RT
Sbjct: 620 NVLLDEHRIPKLSDYGMSIITEEIEKSEAKSEKPKPR--------------------PRT 659

Query: 640 KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESL 699
           K EDDVYNFGFIL ESLVGPI   KGE F LNE ASFGSQDGRR+IVDP+VLTTCSQESL
Sbjct: 660 KAEDDVYNFGFILFESLVGPIACDKGETFFLNEKASFGSQDGRRKIVDPIVLTTCSQESL 719

Query: 700 SIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSD 744
           SI +SIT KCI PE S RPSFEDVLWNLQYAAQVQATADAD KSD
Sbjct: 720 SIAISITTKCISPESSFRPSFEDVLWNLQYAAQVQATADADHKSD 764

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503851|ref|XP_003622214.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355497229|gb|AES78432.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/764 (62%), Positives = 577/764 (75%), Gaps = 46/764 (6%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQ +QTQVLLQLRK+LEYP+ L I+ NY  DLC+L S+ H+SI C+ NSVT LKIMGD  
Sbjct: 23  LQFAQTQVLLQLRKYLEYPTSLQIFENYNLDLCSLPSSEHLSIKCEGNSVTELKIMGDNH 82

Query: 61  VK--ENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLS 118
            K  +  ++NG  +PN TLS+SFSIDSFVTTLTRLT+LRVLSLVSLGIWGPL DKIHRLS
Sbjct: 83  HKHVKVESFNGFAVPNHTLSKSFSIDSFVTTLTRLTSLRVLSLVSLGIWGPLSDKIHRLS 142

Query: 119 SLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL 178
            LE+LD+SSNFLFG+IP  I+ LV LQ LT+D N+F+  +P++++ L NL++LSLK+N L
Sbjct: 143 LLEVLDLSSNFLFGSIPPKIATLVNLQILTLDENYFNTTMPNFFEPLVNLSILSLKNNNL 202

Query: 179 KGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVT 238
           KG FPSS+C+I TL  I++S+NELSG+LP+++AL  LHVLDLREN  DS +PLMPK +VT
Sbjct: 203 KGSFPSSLCKIKTLGVISLSHNELSGELPNLAALFGLHVLDLRENGFDSEIPLMPKSVVT 262

Query: 239 VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTL 298
           VLLS+N FSG IP +FGEL QLQHLDLS N LSG+PPS LFSL NISYL+LA N+LSG++
Sbjct: 263 VLLSKNSFSGEIPVKFGELNQLQHLDLSSNRLSGVPPSSLFSLTNISYLNLAKNVLSGSI 322

Query: 299 PKDLSCGSK------------------LDSISDKRVVKFGGNCLSYDTPSQHKE-AFCKE 339
           P+ L CGSK                  L+S SD+RVV+FGGNCLS ++ +  K  ++CKE
Sbjct: 323 PQKLKCGSKLGFVDISSNMLSGLLPTCLESTSDRRVVRFGGNCLSVNSQAHQKHGSYCKE 382

Query: 340 TNGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQ--EQSTRPKIVQD- 396
           ++  K+   R   + AAIA   V+ LVL AFGV+ Y + C +  R+       PKIVQD 
Sbjct: 383 SSSGKTKFWR-WKIDAAIAIIVVVFLVLLAFGVLFY-RNCHSHSREIYRHEMLPKIVQDN 440

Query: 397 NAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKL 456
           N+ TGVSSE+LA+AR ISQ +KLGTQ +P  R F +EELKE+T NFD  +++GEGS GKL
Sbjct: 441 NSTTGVSSELLASARYISQTMKLGTQATPTCRQFSIEELKESTRNFDLSTYIGEGSAGKL 500

Query: 457 YKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT 516
           YKG+LENG+YV IR+L   KK+S QNLK RLD LSKL HP+LVSLLGHCI+ G +D ++T
Sbjct: 501 YKGKLENGSYVMIRTLILRKKFSTQNLKARLDLLSKLHHPNLVSLLGHCIDGGGKDVTST 560

Query: 517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL 576
           NK+ LVYEY+ NG YR HLSE  P+  LKWSDRLAILIGVAKAVHFLH+ +I G F N+L
Sbjct: 561 NKLHLVYEYVQNGDYRTHLSEFSPDKALKWSDRLAILIGVAKAVHFLHTGIIPGCFRNKL 620

Query: 577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI 636
            TNN+LLDEHR  KLSDYG+S+I EE E ++A G  PK+                     
Sbjct: 621 KTNNVLLDEHRFPKLSDYGMSMIAEEIENIQANGLNPKS--------------------C 660

Query: 637 QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQ 696
           QR +LEDDVYNFGFIL ESL GPI + KGEAF LNE ASF S DGR+RIVDPVVLTTC Q
Sbjct: 661 QREELEDDVYNFGFILFESLAGPIASEKGEAFFLNEKASFDSHDGRKRIVDPVVLTTCCQ 720

Query: 697 ESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADAD 740
           ESL+I +SIT KCI P+ SSRPSFEDVLWNLQYAAQVQA+ADAD
Sbjct: 721 ESLTIAISITTKCISPQSSSRPSFEDVLWNLQYAAQVQASADAD 764

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456272|ref|XP_002279697.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Vitis vinifera]

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/764 (60%), Positives = 566/764 (74%), Gaps = 40/764 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQ+SQTQVLLQLRK LEYP  L+IW ++  D C L+S+  V+ITCQD+ VTG+KIMGDK 
Sbjct: 24  LQSSQTQVLLQLRKQLEYPVQLEIWKDHTLDFCYLSSSTQVNITCQDSFVTGIKIMGDKT 83

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
           VK++  ++G  IP  TLS +FS+DSFVTTL RLT+LRVLSLVSLGIWGPLPDKIHRLSSL
Sbjct: 84  VKDSN-FDGFAIPTVTLSGAFSMDSFVTTLARLTSLRVLSLVSLGIWGPLPDKIHRLSSL 142

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E LD+SSNFLFG++P  I  +V+LQ L++D N+F+  VPD  DSLSNLTVLSL +N+L G
Sbjct: 143 EYLDLSSNFLFGSVPPKICTMVKLQALSLDGNYFNGTVPDCLDSLSNLTVLSLGNNRLNG 202

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
            FP+SI RIATL+D+  S NE+SGKLPD+S LTSLH+LD+ +NKLDS LP +PKG+    
Sbjct: 203 PFPASIQRIATLSDLDFSGNEISGKLPDLSRLTSLHLLDMSKNKLDSKLPALPKGVAMAF 262

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS N F G IPQQ+  L QLQHLDLSFN L+G PP  LFSLPNISYL+LASN LSG+L  
Sbjct: 263 LSNNSFMGEIPQQYSRLVQLQHLDLSFNFLTGTPPEALFSLPNISYLNLASNTLSGSLSN 322

Query: 301 DLSCGSKLDSIS------------------DKRVVKFGGNCLSYDTPSQHKEAFCKETN- 341
            + C S+L  +                   DKRVV   GNCLS     QH +++C     
Sbjct: 323 HIHCSSELSFVDISNNKLTGGLPSCLSTALDKRVVNSDGNCLSIGFQHQHPDSYCMAVPV 382

Query: 342 GSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTG 401
             K SR +++G++ A+  G  +  +L  FG    CKRCC++   EQ    K VQ+N+ TG
Sbjct: 383 KKKESRSKDMGILVAVIGGVFVATLLLVFGCFFVCKRCCSRSISEQHLLHKTVQENSTTG 442

Query: 402 VSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRL 461
           +SSE+L NAR I Q  KLGT+G P  R F LEEL+EATNNFD  +FMG+GS GKLYKGRL
Sbjct: 443 LSSELLTNARFIPQVAKLGTEGVPVCRVFSLEELREATNNFDRSTFMGDGSNGKLYKGRL 502

Query: 462 ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL 521
           ENGT VAIR L   KKY+I+NLK+RLD +++L+H HLV LLGH I++G +DDS+  KVFL
Sbjct: 503 ENGTQVAIRCLPLSKKYTIRNLKLRLDLIARLRHTHLVCLLGHGIDTGGRDDSSVYKVFL 562

Query: 522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI 581
           +YEY+PNG++R+HLSEN PE  LKWS+RL++LIGVAKA+HFLH+ VI G F+NRL TNNI
Sbjct: 563 IYEYLPNGNFRSHLSENGPEKALKWSERLSVLIGVAKALHFLHTGVIPGFFNNRLKTNNI 622

Query: 582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL 641
           LL+EH +AKLSDYG+SII EE++K   KG+G K+                     Q TKL
Sbjct: 623 LLNEHGMAKLSDYGLSIISEENDKHGEKGDGLKS--------------------WQMTKL 662

Query: 642 EDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSI 701
           EDDVY+FG ILLESLVGP V+ + EAFL NEMASFGSQDGRRRIVDP VL TCSQESLSI
Sbjct: 663 EDDVYSFGLILLESLVGPSVSARREAFLQNEMASFGSQDGRRRIVDPTVLATCSQESLSI 722

Query: 702 VVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDS 745
            +SITNKCI  + S+RPS ED+LWNLQYAAQ+Q TAD DQ++D+
Sbjct: 723 AISITNKCISLDSSTRPSAEDILWNLQYAAQIQTTADGDQRTDT 766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558743|ref|XP_003547662.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/766 (63%), Positives = 570/766 (74%), Gaps = 43/766 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQ +QTQVLLQLRK+LEYP+ L +W NY  DLC+L  +AHVS+ C+ NSVT LKIMGD+ 
Sbjct: 23  LQLAQTQVLLQLRKYLEYPTSLQMWENYNVDLCSLPPSAHVSLKCEGNSVTELKIMGDRA 82

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
           VK +  +NGH +PNQTLS SFSIDSFVTTLTRLT LRVL LVSLGIWGPLPDKIHRLS L
Sbjct: 83  VKVD-KFNGHAVPNQTLSLSFSIDSFVTTLTRLTNLRVLRLVSLGIWGPLPDKIHRLSLL 141

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E+LDMS NFL+G++P  +S +V+L TLT+D N+F+  +PDW+DSLSNL+VLSLKSN LKG
Sbjct: 142 EVLDMSLNFLYGSVPPKMSAMVKLHTLTLDGNYFNSTMPDWFDSLSNLSVLSLKSNHLKG 201

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
            FPS++C+I +L DI++S+NELSG LPD++AL+ LHVLDLREN LDS LPLMPK +VT+L
Sbjct: 202 SFPSTLCKIRSLVDISLSHNELSGGLPDLAALSGLHVLDLRENHLDSELPLMPKAVVTIL 261

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS+N FSG IP  F EL+ LQHLDLS N LS +PPS LFSLPNISYL+LASN LSG+LP+
Sbjct: 262 LSKNSFSGEIPNHFSELSHLQHLDLSSNHLSKMPPSSLFSLPNISYLNLASNELSGSLPQ 321

Query: 301 DLSCGSKLDSI------------------SDKRVVKFGGNCLSYDTPSQHKEAFCK-ETN 341
            L+CGSKL  +                  S KRVVK+GGNCL+ D+  Q +  +CK  ++
Sbjct: 322 KLNCGSKLGFVDISSNKLNGGLPSCLANTSGKRVVKYGGNCLAVDSQPQRRGTYCKVSSS 381

Query: 342 GSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTG 401
           G K+    +I   AA+A   V+VLVLSAFGV  Y K    K  + Q    K VQDN+ TG
Sbjct: 382 GRKNFWKWKIA--AAVAMIIVIVLVLSAFGVFFYRKYRSRKIYRHQMLS-KAVQDNSITG 438

Query: 402 VSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRL 461
           VSSEVLA+AR ISQA KLGTQ +P  R F +EELKE T NFD  +++GEGS GKLYKG+L
Sbjct: 439 VSSEVLASARFISQAAKLGTQATPIRRQFSIEELKEVTRNFDLSTYIGEGSLGKLYKGKL 498

Query: 462 ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL 521
           ENGTYV IR +   KK SIQNLK  LD LSKL HP+LVSL GHCI+   QDDS+  K+ L
Sbjct: 499 ENGTYVVIRRVALSKKCSIQNLKAGLDLLSKLHHPNLVSLFGHCIDGDGQDDSSGLKLHL 558

Query: 522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI 581
           VYEY+PNG Y  HLSE   +  LKWSDRLAILIGVAKAVHFLH+ VI G F N+L TNNI
Sbjct: 559 VYEYVPNGKYGTHLSEFSSDKALKWSDRLAILIGVAKAVHFLHTGVIPGCFRNQLKTNNI 618

Query: 582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL 641
           LLDEH I KLSDYG+SII EE E LEAKGE  K+                     QR KL
Sbjct: 619 LLDEHHIPKLSDYGMSIIAEEIEYLEAKGENLKS--------------------CQRAKL 658

Query: 642 EDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSI 701
           EDDVYNFG IL ESLVGPI + KGE + L+E  SF SQDGR +IVDPVVLTTC  ESLSI
Sbjct: 659 EDDVYNFGLILFESLVGPIASEKGEKYFLDEKTSFDSQDGRIKIVDPVVLTTCCPESLSI 718

Query: 702 VVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKSDSTS 747
            +SIT KCI  E S  PSFEDVLWNLQYAAQVQATADA+QK DSTS
Sbjct: 719 AISITTKCISRESSPPPSFEDVLWNLQYAAQVQATADAEQKPDSTS 764

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811543|ref|XP_002873655.1| hypothetical protein ARALYDRAFT_488255 [Arabidopsis lyrata subsp. lyrata] gi|297319492|gb|EFH49914.1| hypothetical protein ARALYDRAFT_488255 [Arabidopsis lyrata subsp. lyrata]

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/788 (58%), Positives = 583/788 (73%), Gaps = 41/788 (5%)

Query: 1   LQTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKP 60
           LQ SQTQVL QLRKHLE+P  L+ WGNY GDLC + +TAH+SITCQ NS+T LK+MGDK 
Sbjct: 25  LQNSQTQVLYQLRKHLEFPKALESWGNYYGDLCQIPATAHMSITCQGNSITELKVMGDKL 84

Query: 61  VKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSL 120
            K    ++G  +PN TLSE+F IDSFVTTLTRLT+LRVLSLVSLGI+G  P KIHRL+SL
Sbjct: 85  FKLFGMFDGSSLPNHTLSEAFLIDSFVTTLTRLTSLRVLSLVSLGIYGEFPGKIHRLNSL 144

Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           E LD+SSN+LFG++P  ISRLV LQ+L +D N+F+ +VPD  DSL+NLTVLSLK+N+ +G
Sbjct: 145 EYLDLSSNYLFGSVPPDISRLVMLQSLMLDGNYFNGSVPDTLDSLTNLTVLSLKNNRFRG 204

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
            FPSSICR+  LT++A+S+NE+SGKLPD+S L+ LH+LDLREN LDS LP+MP  LVTVL
Sbjct: 205 PFPSSICRLGRLTNLALSHNEISGKLPDLSKLSHLHMLDLRENHLDSELPVMPIRLVTVL 264

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
           LS+N FSG IP+ FG L+QLQHLDLSFN L+G P   LFSLPNISYL LASNMLSG LP 
Sbjct: 265 LSKNSFSGEIPRPFGALSQLQHLDLSFNHLTGTPSRFLFSLPNISYLDLASNMLSGKLPL 324

Query: 301 DLSCGSKLDSI------------------SDKRVVKFGGNCLS-YDTPSQHKEAFCKET- 340
           +L+CG KL  +                  S +RVVK GGNCLS + +  QH+E  C+E  
Sbjct: 325 NLTCGGKLGFVDMSNNRFIGTPPRCLAGASGERVVKLGGNCLSIFGSHDQHQEFLCEEAE 384

Query: 341 NGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVIIYCKR----CCTKGRQEQSTRPKIVQD 396
           N  K  +GR++G++ A+  G VL+LV     +++ C      CC++ +    TR K+V D
Sbjct: 385 NEGKQFQGRKVGILIAVIGGGVLILVFFVLVILLLCTNRCSCCCSREKSVPQTRLKVVTD 444

Query: 397 NAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKL 456
           N+ T +S+EVLA+ARLISQ  KLG QG P+ R+F  EELKEAT++FDS  F+GEGS GKL
Sbjct: 445 NSHTSLSAEVLASARLISQTTKLGAQGVPSCRSFSFEELKEATDDFDSSRFLGEGSLGKL 504

Query: 457 YKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT 516
           Y+G LENG+ +AIR L   +K+S Q+++  LD++SKL HPHL+S LGHC ++  + D   
Sbjct: 505 YRGTLENGSSIAIRCLVLSRKFSSQSIRGHLDWMSKLNHPHLLSFLGHCTQTSGEHDPVA 564

Query: 517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL 576
             ++LVYEY+PNGSYR HLSE+  E +L W DRLAILI +AKAVHFLH+ V+ GSF+N L
Sbjct: 565 TILYLVYEYMPNGSYRTHLSESFSEKILTWPDRLAILIEIAKAVHFLHTGVMPGSFNNHL 624

Query: 577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE------GPKARYGFLFIC------- 623
            TNNILLDEH+IAKLSDYG+S I+EE+EKLE            K R   + +C       
Sbjct: 625 KTNNILLDEHKIAKLSDYGVSAIIEENEKLEDSTLLLLLHFADKVRNPQVKVCIFCPSIE 684

Query: 624 --RTSAENVVIVVDIQR--TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ 679
                 EN++  + + R   K EDDVYNFGFILLESL+GP+ T KGEA+LLNEM SFGSQ
Sbjct: 685 KLHGIYENLIQTLGLCRKMAKREDDVYNFGFILLESLIGPVPTTKGEAYLLNEMTSFGSQ 744

Query: 680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADA 739
           DGR++IV P VLTT SQESLSI +SI NKC+  EPS+RPSFEDVLWNLQYAAQ+Q+ ADA
Sbjct: 745 DGRQKIVSPTVLTTSSQESLSIAISIANKCVLLEPSARPSFEDVLWNLQYAAQMQSAADA 804

Query: 740 DQKSDSTS 747
           ++KSD++S
Sbjct: 805 ERKSDTSS 812

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	747
TAIR|locus:2167326	680	AT5G63410 [Arabidopsis thalian	0.593	0.651	0.422	7e-113
TAIR|locus:2079339	802	AT3G03770 [Arabidopsis thalian	0.795	0.740	0.341	4.3e-86
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.784	0.469	0.277	4.9e-50
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.775	0.462	0.270	2.5e-47
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.779	0.488	0.278	6.2e-46
TAIR|locus:2084016	937	AT3G53590 [Arabidopsis thalian	0.377	0.300	0.314	2.9e-45
TAIR|locus:2181017	951	AT5G01950 [Arabidopsis thalian	0.377	0.296	0.291	1.3e-44
TAIR|locus:2156992	946	AT5G49770 [Arabidopsis thalian	0.243	0.192	0.360	1.6e-43
UNIPROTKB|Q8RZV7	1294	P0413C03.22 "Putative extra sp	0.642	0.370	0.292	6.6e-42
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.358	0.239	0.294	3.7e-41

TAIR|locus:2167326 AT5G63410 [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 7.0e-113, Sum P(2) = 7.0e-113
 Identities = 204/483 (42%), Positives = 279/483 (57%)

Query:   144 LQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS 203
             +  +T+   F  ++       L +L VL+L S  + G+ P  + R+++L  + +SNN L 
Sbjct:    95 ISNVTLSDGFSIESFVTTLSRLKSLRVLTLASLGIWGRLPEKLHRLSSLEYLDLSNNFLF 154

Query:   204 GKLPD-MSALTSLHVLDLRENKLDSGLPLMPKG---LVTVLLSRNLFSGAIPQQFGELAQ 259
             G +P  +S +  L       N  +  LP        L  +    N  SG +      L+ 
Sbjct:   155 GSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGELHSSLLSLST 214

Query:   260 LQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKF 319
             ++++DL  N LSG  P  L     + ++ ++ N L+G LP+ LS  SK D       ++F
Sbjct:   215 IEYIDLRANSLSGSLPDDLKCGSKLWFIDISDNKLTGKLPRCLS--SKQDI-----ALRF 267

Query:   320 GGNCLSYDTPSQHKEAFC-KETNGS------------------KSSRGREIGLIAAIAFG 360
              GNCLS +   QH E+FC KE   +                  K  +G  IGLI  I+  
Sbjct:   268 NGNCLSLEK-QQHPESFCVKEVRAAAKAEAKAEAEAANESGKRKWKKGALIGLIVGISM- 325

Query:   361 AVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPT-GVSSEVLANARLISQAVKL 419
             +VLVLV   F   I  +R   KG  ++      VQDN PT G SSE+L+NAR IS+  K 
Sbjct:   326 SVLVLVCCVF---ILLRR---KGVTKKHVHHNTVQDNHPTTGFSSEILSNARYISETSKF 379

Query:   420 GTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSR-GKLYKGRLENGTYVAIRSLTFLKKY 478
             G++  P  R F LEE+ +AT NFD    +GE S  G LYKG LENGT VAIR L   KKY
Sbjct:   380 GSEDLPVCRQFSLEEIVKATKNFDKTMILGESSLYGTLYKGNLENGTKVAIRCLPSSKKY 439

Query:   479 SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
             SI+NLK+RLD L+KL+HP+LV LLGHCI+ G +DD +  KVFL+YEYIPNG++++ LS+N
Sbjct:   440 SIRNLKLRLDLLAKLRHPNLVCLLGHCIDCGGKDDYSVEKVFLIYEYIPNGNFQSCLSDN 499

Query:   539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
                  + WS+RL +L GVAKAVHFLH+ VI G FSNRL TNN+LL++HR AKLSDYG+SI
Sbjct:   500 SSGKGMNWSERLNVLTGVAKAVHFLHTGVIPGFFSNRLKTNNVLLNQHRFAKLSDYGLSI 559

Query:   599 IME 601
             + E
Sbjct:   560 VSE 562

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079339 AT3G03770 [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 217/636 (34%), Positives = 341/636 (53%)

Query:   106 IWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSL 165
             ++GP+P ++  L++L+ L +  N   G +P  I  L  L  L++  N  + ++P    SL
Sbjct:   141 LFGPIPHELSSLATLQTLILDENMFSGELPDWIDSLPSLAVLSLRKNVLNGSLPSSLSSL 200

Query:   166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKL 225
             S L VL+L +N+  G  P  +  +  L  + +  N      P +S    L  L L +NK 
Sbjct:   201 SGLRVLALANNRFNGALPD-LSHLTNLQVLDLEGNSFGPLFPRLS--NKLVTLILSKNKF 257

Query:   226 DSGLPLMPKGLVTVL----LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSL 281
              S +       +  L    LS N F G  P     L  + +L++S N L+G   + L   
Sbjct:   258 RSAVSAEEVSSLYQLQHLDLSYNTFVGPFPTSLMSLPAITYLNISHNKLTGRLSANLSCN 317

Query:   282 PNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETN 341
               + ++ ++SN+L+G+LP   +C  K  S + + VV +  NCL+     Q   +FC    
Sbjct:   318 SQLMFVDMSSNLLTGSLP---TC-LKPSSGTSRDVV-YASNCLATTNEDQRPVSFCSNEA 372

Query:   342 ---GSKSSRGREIGLIAAIAFG---AVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQ 395
                G    R  ++  +  IA G   ++L ++L A  + +  +R   K    +S+ P++++
Sbjct:   373 LAVGILPQRRNKVSKVG-IALGVTASILGVLLLAGALFVVLRRLNAKKTVTKSS-PRLIR 430

Query:   396 DNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGK 455
             +NA  G +S++L++AR ISQ +KLG  G PAYRTF LEEL+ ATNNF+S +FMGEGS+G+
Sbjct:   431 ENASMGYTSKLLSDARYISQTMKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQ 490

Query:   456 LYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN 515
             +Y+GRL++G++VAIR L   K  S QNL   ++ ++KL+H HLVS+LGHC E    DDS 
Sbjct:   491 IYRGRLKDGSFVAIRCLKMKKSCSTQNLMHHIELIAKLRHRHLVSVLGHCFEC-YLDDST 549

Query:   516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR 575
              +++F V+EY+PNG  R  +S+     +L W  R+++ IGVAK + FLH+ ++ G + N 
Sbjct:   550 VSRMFFVFEYVPNGELRTWISDGHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNN 609

Query:   576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE--GPKARYGFLFICRTSAENVVIV 633
             L   +ILLD +  AKLS Y + +++E   K+   G   GPK             E+ + +
Sbjct:   610 LKMTDILLDNNLAAKLSSYNLPLLVEGLGKVGQVGSRSGPKGTPSI------KDEDKIDI 663

Query:   634 VDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM-ASFGSQDGRRR-IVDPVVL 691
              D     LE         L+     P+        L  ++ AS  + DG RR +VDP V 
Sbjct:   664 YDFGVILLE---------LIVGR--PLRAKSQVDVLKEQLQASISADDGARRSMVDPTVH 712

Query:   692 TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
               CS +SL  ++ I  +C+  +P  RPS EDVLWNL
Sbjct:   713 RACSDQSLKTMMEICVRCLLKDPLERPSIEDVLWNL 748

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 4.9e-50, P = 4.9e-50
 Identities = 178/641 (27%), Positives = 297/641 (46%)

Query:   108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
             G +P  + ++  L LLDMSSN L G IP  +    +L  + ++ NF    +P W   LS 
Sbjct:   613 GKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQ 672

Query:   168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLD 226
             L  L L SNQ     P+ +     L  +++  N L+G +P ++  L +L+VL+L +N+  
Sbjct:   673 LGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFS 732

Query:   227 SGLP-LMPK--GLVTVLLSRNLFSGAIPQQFGELAQLQH-LDLSFNDLSGIPPSVLFSLP 282
               LP  M K   L  + LSRN  +G IP + G+L  LQ  LDLS+N+ +G  PS + +L 
Sbjct:   733 GSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLS 792

Query:   283 NISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETN- 341
              +  L L+ N L+G +P  +     L  ++       GG  L         ++F   T  
Sbjct:   793 KLETLDLSHNQLTGEVPGSVGDMKSLGYLNVS-FNNLGGK-LKKQFSRWPADSFLGNTGL 850

Query:   342 -GSKSSR-------GREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKI 393
              GS  SR        ++ GL A        +  L+A G++I       K R +   +   
Sbjct:   851 CGSPLSRCNRVRSNNKQQGLSARSVVIISAISALTAIGLMILVIALFFKQRHDFFKK--- 907

Query:   394 VQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRT-FYLEELKEATNNFDSLSFMGEGS 452
                    G  S    ++   SQA       + A ++    E++ EAT+N      +G G 
Sbjct:   908 ------VGHGSTAYTSSSSSSQATHKPLFRNGASKSDIRWEDIMEATHNLSEEFMIGSGG 961

Query:   453 RGKLYKGRLENGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ 511
              GK+YK  LENG  VA++ + +     S ++    +  L +++H HLV L+G+C  S   
Sbjct:   962 SGKVYKAELENGETVAVKKILWKDDLMSNKSFSREVKTLGRIRHRHLVKLMGYC--SSKS 1019

Query:   512 DDSNTNKVFLVYEYIPNGSYRAHLSENCP-----ENVLKWSDRLAILIGVAKAVHFLHSS 566
             +  N     L+YEY+ NGS    L E+ P     + +L W  RL I +G+A+ V +LH  
Sbjct:  1020 EGLN----LLIYEYMKNGSIWDWLHEDKPVLEKKKKLLDWEARLRIAVGLAQGVEYLHHD 1075

Query:   567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA-RYGFLFICRT 625
              +       + ++N+LLD +  A L D+G++ ++ E+           A  YG++     
Sbjct:  1076 CVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDTNTDSNTWFACSYGYI----- 1130

Query:   626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK---GEAFLLNEMASFGSQDG- 681
             + E       ++ T+ + DVY+ G +L+E + G + T      E  ++  + +     G 
Sbjct:  1131 APE---YAYSLKATE-KSDVYSMGIVLMEIVTGKMPTDSVFGAEMDMVRWVETHLEVAGS 1186

Query:   682 -RRRIVDPVV--LTTCSQESLSIVVSITNKCICPEPSSRPS 719
              R +++DP +  L    +++   V+ I  +C    P  RPS
Sbjct:  1187 ARDKLIDPKLKPLLPFEEDAACQVLEIALQCTKTSPQERPS 1227

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-47, P = 2.5e-47
 Identities = 174/644 (27%), Positives = 300/644 (46%)

Query:   108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
             G +P    ++S L LLD+S N L G IP  +    +L  + ++ N+    +P W   L  
Sbjct:   614 GRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPL 673

Query:   168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLD 226
             L  L L SN+  G  P+ I  +  +  + +  N L+G +P ++  L +L+ L+L EN+L 
Sbjct:   674 LGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLS 733

Query:   227 SGLP-LMPK--GLVTVLLSRNLFSGAIPQQFGELAQLQH-LDLSFNDLSGIPPSVLFSLP 282
               LP  + K   L  + LSRN  +G IP + G+L  LQ  LDLS+N+ +G  PS + +LP
Sbjct:   734 GPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLP 793

Query:   283 NISYLHLASNMLSGTLPKDL----SCG------SKLDSISDKRVVKFGGNCLSYDTPSQH 332
              +  L L+ N L G +P  +    S G      + L+    K+  ++  +    +     
Sbjct:   794 KLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAFVGNAGLCG 853

Query:   333 KE-AFCKETNGSKSSRGREIGLIAAI-AFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTR 390
                + C    GSK+ R      +  I A  ++  + L    +I++ K       Q     
Sbjct:   854 SPLSHCNRA-GSKNQRSLSPKTVVIISAISSLAAIALMVLVIILFFK-------QNHDLF 905

Query:   391 PKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGE 450
              K+       G +S   +N+   SQA      G+ +      +++ EAT+  +    +G 
Sbjct:   906 KKV------RGGNSAFSSNSSS-SQAPLFSNGGAKS--DIKWDDIMEATHYLNEEFMIGS 956

Query:   451 GSRGKLYKGRLENGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESG 509
             G  GK+YK  L+NG  +A++ + +     S ++    +  L  ++H HLV L+G+C  S 
Sbjct:   957 GGSGKVYKAELKNGETIAVKKILWKDDLMSNKSFNREVKTLGTIRHRHLVKLMGYC--SS 1014

Query:   510 SQDDSNTNKVFLVYEYIPNGSYR--AHLSENCPEN-VLKWSDRLAILIGVAKAVHFLHSS 566
               D  N     L+YEY+ NGS     H +EN  +  VL W  RL I +G+A+ V +LH  
Sbjct:  1015 KADGLN----LLIYEYMANGSVWDWLHANENTKKKEVLGWETRLKIALGLAQGVEYLHYD 1070

Query:   567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA-RYGFLFICRT 625
              +       + ++N+LLD +  A L D+G++ I+  +     +     A  YG++     
Sbjct:  1071 CVPPIVHRDIKSSNVLLDSNIEAHLGDFGLAKILTGNYDTNTESNTMFAGSYGYI----- 1125

Query:   626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK---GEAFLLNEMASF-----G 677
             + E       ++ T+ + DVY+ G +L+E + G + T      E  ++  + +      G
Sbjct:  1126 APE---YAYSLKATE-KSDVYSMGIVLMEIVTGKMPTEAMFDEETDMVRWVETVLDTPPG 1181

Query:   678 SQDGRRRIVDPVV--LTTCSQESLSIVVSITNKCICPEPSSRPS 719
             S+  R +++D  +  L  C +E+   V+ I  +C    P  RPS
Sbjct:  1182 SE-AREKLIDSELKSLLPCEEEAAYQVLEIALQCTKSYPQERPS 1224

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 180/647 (27%), Positives = 300/647 (46%)

Query:   110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
             +PD +  L    + D+S N L G IP  +   + L  +++  N     +P     L+NLT
Sbjct:   573 MPD-LSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLT 631

Query:   170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSG 228
             +L L  N L G  P  +     L  + ++NN+L+G +P+    L SL  L+L +NKLD  
Sbjct:   632 ILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGP 691

Query:   229 LPLMP---KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
             +P      K L  + LS N  SG +  +   + +L  L +  N  +G  PS L +L  + 
Sbjct:   692 VPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLE 751

Query:   286 YLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETN---- 341
             YL ++ N+LSG +P  + CG  L ++    + K   N L  + PS   +  C++ +    
Sbjct:   752 YLDVSENLLSGEIPTKI-CG--LPNLEFLNLAK---NNLRGEVPS---DGVCQDPSKALL 802

Query:   342 -GSKSSRGREIGLIAAI-------AFG-AVLVL--VLSAFGVIIYCKRCCTKGRQEQSTR 390
              G+K   GR +G    I       A+G A L+L   +  F  +   +R     R +Q   
Sbjct:   803 SGNKELCGRVVGSDCKIEGTKLRSAWGIAGLMLGFTIIVFVFVFSLRRWAMTKRVKQRDD 862

Query:   391 PKIVQDNAPTGVSSE---VLANARLISQ-AVKLGTQGSPAYRTFYLEELKEATNNFDSLS 446
             P+ ++++   G   +    L+ +R     ++ +     P  +   L ++ EAT++F   +
Sbjct:   863 PERMEESRLKGFVDQNLYFLSGSRSREPLSINIAMFEQPLLKV-RLGDIVEATDHFSKKN 921

Query:   447 FMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
              +G+G  G +YK  L     VA++ L+  K    +     ++ L K++HP+LVSLLG+C 
Sbjct:   922 IIGDGGFGTVYKACLPGEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYC- 980

Query:   507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHL-SENCPENVLKWSDRLAILIGVAKAVHFLHS 565
                    S + +  LVYEY+ NGS    L ++     VL WS RL I +G A+ + FLH 
Sbjct:   981 -------SFSEEKLLVYEYMVNGSLDHWLRNQTGMLEVLDWSKRLKIAVGAARGLAFLHH 1033

Query:   566 SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKARYGFLFI 622
               I       +  +NILLD     K++D+G++ ++   E H      G        F +I
Sbjct:  1034 GFIPHIIHRDIKASNILLDGDFEPKVADFGLARLISACESHVSTVIAGT-------FGYI 1086

Query:   623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTG----KGEAFLLNEMASFGS 678
                  ++        R   + DVY+FG ILLE + G   TG    + E   L   A    
Sbjct:  1087 PPEYGQSA-------RATTKGDVYSFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQKI 1139

Query:   679 QDGRR-RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
               G+   ++DP++++   + S   ++ I   C+   P+ RP+  DVL
Sbjct:  1140 NQGKAVDVIDPLLVSVALKNSQLRLLQIAMLCLAETPAKRPNMLDVL 1186

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2084016 AT3G53590 [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 2.9e-45, Sum P(2) = 2.9e-45
 Identities = 95/302 (31%), Positives = 145/302 (48%)

Query:   428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
             + F   EL +ATN FDS + +G GS GK+YKG L N T VAI+        S +     +
Sbjct:   600 KKFSFVELSDATNGFDSSTLIGRGSYGKVYKGILSNKTEVAIKRGEETSLQSEKEFLNEI 659

Query:   488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
             D LS+L H +LVSL+G+  + G Q         LVYEY+PNG+ R  LS N  +  L +S
Sbjct:   660 DLLSRLHHRNLVSLIGYSSDIGEQ--------MLVYEYMPNGNVRDWLSANAADT-LSFS 710

Query:   548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
              R  + +G AK + +LH+          + T+NILLD    AK++D+G+S +        
Sbjct:   711 MRSHVALGSAKGILYLHTEANPPVIHRDIKTSNILLDCQLHAKVADFGLSRLAPAF---- 766

Query:   608 AKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKG 665
              +G+G  A    + +  T           Q+  +  DVY+FG +LLE L G  P   G  
Sbjct:   767 GEGDGEPAHVSTV-VRGTPGYLDPEYFMTQQLTVRSDVYSFGVVLLELLTGMHPFFEG-- 823

Query:   666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW 725
                ++ E+ +  ++ G    V    +  CS + +  +  +   C    P +RP    V+ 
Sbjct:   824 -THIIREVRT-ANECGTVLSVADSRMGQCSPDKVKKLAELALWCCEDRPETRPPMSKVVK 881

Query:   726 NL 727
              L
Sbjct:   882 EL 883

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2181017 AT5G01950 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
 Identities = 88/302 (29%), Positives = 146/302 (48%)

Query:   428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
             R F  +EL EAT++F S + +G G  GK+Y+G L + T  AI+          +     +
Sbjct:   612 RGFSFKELAEATDDFSSSTLVGRGGYGKVYRGVLSDNTVAAIKRADEGSLQGEKEFLNEI 671

Query:   488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
             + LS+L H +LVSL+G+C E   Q         LVYE++ NG+ R  LS    E+ L + 
Sbjct:   672 ELLSRLHHRNLVSLIGYCDEESEQ--------MLVYEFMSNGTLRDWLSAKGKES-LSFG 722

Query:   548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
              R+ + +G AK + +LH+      F   +  +NILLD +  AK++D+G+S +      LE
Sbjct:   723 MRIRVALGAAKGILYLHTEANPPVFHRDIKASNILLDPNFNAKVADFGLSRLAPV---LE 779

Query:   608 AKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLED--DVYNFGFILLESLVGPIVTGKG 665
              + + PK       + R +   +     +   KL D  DVY+ G + LE L G      G
Sbjct:   780 DEEDVPKH---VSTVVRGTPGYLDPEYFLTH-KLTDKSDVYSIGVVFLELLTGMHAISHG 835

Query:   666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW 725
             +  ++ E+ +   +D    ++D   +   S ES+    ++  +C    P  RP   +V+ 
Sbjct:   836 KN-IVREVKTAEQRDMMVSLIDKR-MEPWSMESVEKFAALALRCSHDSPEMRPGMAEVVK 893

Query:   726 NL 727
              L
Sbjct:   894 EL 895

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2156992 AT5G49770 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 70/194 (36%), Positives = 102/194 (52%)

Query:   428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
             + F  EEL + TNNF   + +G G  G++YKG L NG  +AI+             K  +
Sbjct:   620 KAFTFEELSKCTNNFSDANDVGGGGYGQVYKGTLPNGQVIAIKRAQQGSMQGAFEFKTEI 679

Query:   488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-ENCPENVLKW 546
             + LS++ H ++V LLG C +   Q         LVYEYIPNGS R  LS +N  +  L W
Sbjct:   680 ELLSRVHHKNVVKLLGFCFDQKEQ--------MLVYEYIPNGSLRDGLSGKNGVK--LDW 729

Query:   547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
             + RL I +G  K + +LH           + +NNILLDEH  AK++D+G+S ++ + EK 
Sbjct:   730 TRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKA 789

Query:   607 EAKGEGPKARYGFL 620
                 +  K   G+L
Sbjct:   790 HVTTQ-VKGTMGYL 802

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 473 (171.6 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 154/527 (29%), Positives = 243/527 (46%)

Query:   108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
             G +P  I   + + +L++  N L G IP  +  L  L ++ +  N F   +  W   L  
Sbjct:   664 GQIPTSIKNCAMVMVLNLQGNLLNGTIPVELGELTNLTSINLSFNEFVGPMLPWSGPLVQ 723

Query:   168 LTVLSLKSNQLKGQFPSSICRIAT-LTDIAMSNNELSGKLPDMSALTS-LHVLDLRENKL 225
             L  L L +N L G  P+ I +I   +  + +S+N L+G LP      + L+ LD+  N L
Sbjct:   724 LQGLILSNNHLDGSIPAKIGQILPKIAVLDLSSNALTGTLPQSLLCNNYLNHLDVSNNHL 783

Query:   226 DSGLPLM-PKGLV---TVLL---SRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVL 278
                +    P G     T+L    S N FSG++ +      QL  LD+  N L+G  PS L
Sbjct:   784 SGHIQFSCPDGKEYSSTLLFFNSSSNHFSGSLDESISNFTQLSTLDIHNNSLTGRLPSAL 843

Query:   279 FSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS-YDTPSQHKEAFC 337
               L +++YL L+SN L G +P    CG  + +I       F GN +  Y          C
Sbjct:   844 SDLSSLNYLDLSSNNLYGAIP----CG--ICNIFGLSFANFSGNYIDMYSLADCAAGGIC 897

Query:   338 KETNGSKSS------RGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQ---EQS 388
               TNG+         R R    I A  F  ++VLVL A    +Y +R   + R    E +
Sbjct:   898 S-TNGTDHKALHPYHRVRRAITICAFTFVIIIVLVLLA----VYLRRKLVRSRPLAFESA 952

Query:   389 TRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFM 448
             ++ K   +  PT  + E+L        ++ L T      R    +++ +AT NF  +  +
Sbjct:   953 SKAKATVE--PTS-TDELLGKKSREPLSINLATFEHALLRVT-ADDILKATENFSKVHII 1008

Query:   449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
             G+G  G +YK  L  G  VAI+ L    ++   +     ++ + K++HP+LV LLG+C+ 
Sbjct:  1009 GDGGFGTVYKAALPEGRRVAIKRLHGGHQFQGDREFLAEMETIGKVKHPNLVPLLGYCV- 1067

Query:   508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE-NVLKWSDRLAILIGVAKAVHFLHSS 566
              G +        FL+YEY+ NGS    L         L W DRL I +G A+ + FLH  
Sbjct:  1068 CGDER-------FLIYEYMENGSLEMWLRNRADALEALGWPDRLKICLGSARGLAFLHHG 1120

Query:   567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKG 610
              +       + ++NILLDE+   ++SD+G++ I+   E H   +  G
Sbjct:  1121 FVPHIIHRDMKSSNILLDENFEPRVSDFGLARIISACETHVSTDIAG 1167

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
 Identities = 83/282 (29%), Positives = 134/282 (47%)

Query:   108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
             G +     +   L  L MS+N + GAIP+ I  + +L  L + TN     +P+   +L+N
Sbjct:   548 GEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTN 607

Query:   168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLD 226
             L+ L L  NQL G+ P+ +  +  L  + +S+N  S ++P    +   LH ++L  NK D
Sbjct:   608 LSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFD 667

Query:   227 SGLPLMPK--GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNI 284
               +P + K   L  + LS N   G IP Q   L  L  LDLS N+LSG+ P+    +  +
Sbjct:   668 GSIPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIAL 727

Query:   285 SYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAFCKETNGSK 344
             + + +++N L G LP D     K  + +D      G   L  + P Q  +  C+E    K
Sbjct:   728 TNVDISNNKLEGPLP-DTPTFRK--ATADALEENIG---LCSNIPKQRLKP-CRELKKPK 780

Query:   345 SSRGREIGLIAAIAFGAVLVLVLSAFGVIIYC--KRCCTKGR 384
              +    + ++  I  G +++L + A     YC  KR    GR
Sbjct:   781 KNGNLVVWILVPI-LGVLVILSICA-NTFTYCIRKRKLQNGR 820

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	747
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-24
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-22
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	5e-22
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-20
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-17
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	7e-17
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-16
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	6e-16
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-14
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	6e-13
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-12
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-12
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	9e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-11
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	4e-11
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	6e-11
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	7e-11
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	7e-11
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	9e-11
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-10
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	1e-09
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-09
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	3e-09
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	4e-09
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-08
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-08
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-08
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-08
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-08
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	4e-08
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-08
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	4e-08
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	5e-08
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	5e-08
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-07
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-07
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	2e-07
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	2e-07
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	2e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-07
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-07
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	2e-07
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-07
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	6e-07
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	7e-07
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	8e-07
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	9e-07
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	2e-06
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	2e-06
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-06
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-06
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	2e-06
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	2e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	3e-06
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-06
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	3e-06
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	4e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	4e-06
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-06
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	5e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	7e-06
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	7e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	7e-06
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	9e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	9e-06
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	1e-05
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	1e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-05
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-05
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	2e-05
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	3e-05
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	3e-05
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	3e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-05
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	4e-05
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	4e-05
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	7e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	7e-05
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	7e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	7e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	7e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	8e-05
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	9e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	9e-05
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	1e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-04
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	2e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	2e-04
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	3e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-04
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	4e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	4e-04
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	4e-04
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	5e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	5e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	5e-04
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	6e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	7e-04
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	7e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	7e-04
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	8e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	8e-04
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	8e-04
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	8e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	0.001
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.001
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	0.001
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	0.001
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	0.001
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	0.001
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	0.002
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	0.002
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	0.002
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	0.002
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.003
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	0.004
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.004
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (362), Expect = 3e-35
 Identities = 176/703 (25%), Positives = 284/703 (40%), Gaps = 129/703 (18%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
           LT L  L+VL L S    G +P  + + ++L +LD+S+N L G IP G+     L  L +
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387

Query: 150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
            +N  +  +P    +  +L  + L+ N   G+ PS   ++  +  + +SNN L G++   
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447

Query: 210 S-ALTSLHVLDLRENKLDSGLP--LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLS 266
              + SL +L L  NK   GLP     K L  + LSRN FSGA+P++ G L++L  L LS
Sbjct: 448 KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 267 FNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK-----------DLSCG-------SKL 308
            N LSG  P  L S   +  L L+ N LSG +P            DLS           L
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Query: 309 DSISDKRVVKFGGNCLSYDTPS------------QHKEAFCKETNGSKSSRGREIG---- 352
            ++     V    N L    PS                  C     S     + +     
Sbjct: 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPS 627

Query: 353 --LIAAIAFGAVLVLVLSAFGVIIYCKRCCTKGRQEQSTRPKIVQDNAPTGVSSEVLANA 410
                    GA LVL L AFG +          R   +   K V++   T          
Sbjct: 628 WWFYITCTLGAFLVLALVAFGFVFI--------RGRNNLELKRVENEDGTW--------- 670

Query: 411 RLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAI 469
                  +L    S   ++  + ++  +    + +S    G +G  YKG+ ++NG    +
Sbjct: 671 -------ELQFFDSKVSKSITINDILSSLKEENVIS---RGKKGASYKGKSIKNGMQFVV 720

Query: 470 RSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV-FLVYEYIP 527
           +    +    SI + ++    + KLQHP++V L+G C          + K  +L++EYI 
Sbjct: 721 KE---INDVNSIPSSEIAD--MGKLQHPNIVKLIGLC---------RSEKGAYLIHEYIE 766

Query: 528 NGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD--- 584
             +    LSE      L W  R  I IG+AKA+ FLH           L+   I++D   
Sbjct: 767 GKN----LSEVL--RNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKD 820

Query: 585 -EHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLED 643
             H    L      +  +    + +    P+ R                  + +    + 
Sbjct: 821 EPHLRLSLPG---LLCTDTKCFISSAYVAPETR------------------ETKDITEKS 859

Query: 644 DVYNFGFILLESLVGPIVTGKGEA---FLLN----EMASFGSQDGRRRI-VDPVVLTTCS 695
           D+Y FG IL+E     ++TGK  A   F ++    E A +   D    + +DP +    S
Sbjct: 860 DIYGFGLILIE-----LLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVS 914

Query: 696 --QESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQAT 736
             Q  +  V+++   C   +P++RP   DVL  L+ A++  ++
Sbjct: 915 VNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSSSS 957

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (300), Expect = 1e-27
 Identities = 99/316 (31%), Positives = 152/316 (48%), Gaps = 25/316 (7%)

Query: 1   LQTSQTQVLLQLRKHLEYPSP-LDIWGNYEGDLCNLTSTAHVSITCQDNS-VTGLKIMGD 58
           L   + ++LL  +  +  P   L  W N   D+C         ITC ++S V  + + G 
Sbjct: 26  LHAEELELLLSFKSSINDPLKYLSNW-NSSADVCLWQG-----ITCNNSSRVVSIDLSGK 79

Query: 59  KPVKENTAYNGH-------PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLP 111
               + ++            + N  LS     D F T+    ++LR L+L +    G +P
Sbjct: 80  NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS----SSLRYLNLSNNNFTGSIP 135

Query: 112 DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL 171
                + +LE LD+S+N L G IP+ I     L+ L +  N     +P+   +L++L  L
Sbjct: 136 RG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193

Query: 172 SLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLP 230
           +L SNQL GQ P  + ++ +L  I +  N LSG++P ++  LTSL+ LDL  N L   +P
Sbjct: 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Query: 231 LM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL 287
                 K L  + L +N  SG IP     L +L  LDLS N LSG  P ++  L N+  L
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 288 HLASNMLSGTLPKDLS 303
           HL SN  +G +P  L+
Sbjct: 314 HLFSNNFTGKIPVALT 329

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  114 bits (288), Expect = 3e-26
 Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 12/248 (4%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
           +LT LT+L  L+L S  + G +P ++ ++ SL+ + +  N L G IP  I  L  L  L 
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
           +  N     +P    +L NL  L L  N+L G  P SI  +  L  + +S+N LSG++P+
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Query: 209 MSA-LTSLHVLDLRENKLDSGLPL----MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
           +   L +L +L L  N     +P+    +P+  V  L S N FSG IP+  G+   L  L
Sbjct: 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS-NKFSGEIPKNLGKHNNLTVL 361

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNC 323
           DLS N+L+G  P  L S  N+  L L SN L G +PK L     L      R V+   N 
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL------RRVRLQDNS 415

Query: 324 LSYDTPSQ 331
            S + PS+
Sbjct: 416 FSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (274), Expect = 1e-24
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
           ++L  L  L+ L L    + GP+P  I  L  L  LD+S N L G IP  + +L  L+ L
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP 207
            + +N F   +P    SL  L VL L SN+  G+ P ++ +   LT + +S N L+G++P
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Query: 208 D-MSALTSLHVLDLRENKLDSGLPL---MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
           + + +  +L  L L  N L+  +P      + L  V L  N FSG +P +F +L  +  L
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSI 311
           D+S N+L G   S  + +P++  L LA N   G LP D     +L+++
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENL 480

Length = 968

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 96.0 bits (240), Expect = 4e-22
 Identities = 74/305 (24%), Positives = 129/305 (42%), Gaps = 80/305 (26%)

Query: 449 GEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYSIQNLKVRLDFL------SKLQHPH 497
           GEG+ G++YKG L        T VA+++L   K+ + +  + R +FL       KL HP+
Sbjct: 8   GEGAFGEVYKGTLKGDGEGTETKVAVKTL---KEGASE--EEREEFLEEASIMKKLSHPN 62

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V LLG C +           +++V EY+P G     L ++     L   D L + + +A
Sbjct: 63  IVRLLGVCTQGEP--------LYIVTEYMPGGDLLDFLRKH--GEKLTLKDLLQMALQIA 112

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
           K + +L S     +F +R L   N L+ E+ + K+SD+G+S  + E +    +G G    
Sbjct: 113 KGMEYLESK----NFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGK--- 165

Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
              L I   + E     +   +   + DV++FG           V        L E+ + 
Sbjct: 166 ---LPIKWMAPE----SLKDGKFTSKSDVWSFG-----------VL-------LWEIFTL 200

Query: 677 GSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED 722
           G Q              +   R+  P     C  E    +  +  +C   +P  RP+F +
Sbjct: 201 GEQPYPGMSNEEVLELLEDGYRLPRPE---NCPDE----LYELMLQCWAYDPEDRPTFSE 253

Query: 723 VLWNL 727
           ++ +L
Sbjct: 254 LVEDL 258

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 96.1 bits (240), Expect = 5e-22
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 79/305 (25%)

Query: 449 GEGSRGKLYKGRLENGTY----VAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           GEG+ G++YKG+L+        VA+++L   K+ +  + + R DFL       KL HP++
Sbjct: 4   GEGAFGEVYKGKLKGKDGKTTEVAVKTL---KEDA--SEEERKDFLKEARVMKKLGHPNV 58

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE------NVLKWSDRLAI 552
           V LLG C E           ++LV EY+  G    +L ++ P       + L   D L+ 
Sbjct: 59  VRLLGVCTEEE--------PLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSF 110

Query: 553 LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
            I +AK + +L S      F +R L   N L+ E  + K+SD+G+S  + + +    K  
Sbjct: 111 AIQIAKGMEYLASK----KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTG 166

Query: 612 GP-KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
           G    R+        + E   +   I  +K   DV++FG       V           LL
Sbjct: 167 GKLPIRW-------MAPE--SLKDGIFTSK--SDVWSFG-------V-----------LL 197

Query: 671 NEMASFGS--------QDGRRRIVDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPS 719
            E+ + G+        ++    +     L     C  E    +  +   C   +P  RP+
Sbjct: 198 WEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEYCPDE----LYELMLSCWQLDPEDRPT 253

Query: 720 FEDVL 724
           F +++
Sbjct: 254 FSELV 258

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQHPHLVSLLGHCI 506
           GEG  G +Y  R  + G  VAI+ +      S+    +R ++ L KL HP++V L G   
Sbjct: 2   GEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFE 61

Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS- 565
           +         N ++LV EY   GS +  L EN  E  L   + L IL+ + + + +LHS 
Sbjct: 62  D--------ENHLYLVMEYCEGGSLKDLLKEN--EGKLSEDEILRILLQILEGLEYLHSN 111

Query: 566 SVISGSFSNRLTTNNILLDE-HRIAKLSDYGISIIMEEHEKLEAKGEGP 613
            +I       L   NILLD  +   KL+D+G+S ++   + L     G 
Sbjct: 112 GIIHRD----LKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGT 156

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 83.3 bits (207), Expect = 1e-17
 Identities = 71/311 (22%), Positives = 125/311 (40%), Gaps = 99/311 (31%)

Query: 449 GEGSRGKLYKGRLENGTY-----VAIRSLTFLKKYSIQNLKVRLDFL------SKLQHPH 497
           GEG+ G++YKG+L+         VA+++L   K+ +  + +   +FL       KL HP+
Sbjct: 8   GEGAFGEVYKGKLKGKGGKKKVEVAVKTL---KEDA--SEQQIEEFLREARIMRKLDHPN 62

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V LLG C E           +++V EY+  G   ++L +N     L  SD L+  + +A
Sbjct: 63  VVKLLGVCTEEEP--------LYIVMEYMEGGDLLSYLRKN--RPKLSLSDLLSFALQIA 112

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE----- 611
           + + +L     S +F +R L   N L+ E+ + K+SD+G+S  + + +    +G      
Sbjct: 113 RGMEYLE----SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIR 168

Query: 612 --GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL 669
              P++     F   TS                 DV++FG       V           L
Sbjct: 169 WMAPESLKEGKF---TSKS---------------DVWSFG-------V-----------L 192

Query: 670 LNEMASFGSQ----------------DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
           L E+ + G Q                  R           C  E    +  +  +C   +
Sbjct: 193 LWEIFTLGEQPYPGMSNEEVLEYLKNGYRLPQPPN-----CPPE----LYDLMLQCWAED 243

Query: 714 PSSRPSFEDVL 724
           P  RP+F +++
Sbjct: 244 PEDRPTFSELV 254

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 80.7 bits (200), Expect = 7e-17
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 30/175 (17%)

Query: 449 GEGSRGKLYKGRLENGTY-----VAIRSLTFLKKYSIQNLKVRLDFL------SKLQHPH 497
           GEG+ G++YKG L+         VA+++L   K+ +  + +   +FL       KL HP+
Sbjct: 8   GEGAFGEVYKGTLKGKGDGKEVEVAVKTL---KEDA--SEQQIEEFLREARIMRKLDHPN 62

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V LLG C E           + +V EY+P G    +L +N     L  SD L+  + +A
Sbjct: 63  IVKLLGVCTEEEP--------LMIVMEYMPGGDLLDYLRKN-RPKELSLSDLLSFALQIA 113

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
           + + +L     S +F +R L   N L+ E+ + K+SD+G+S  + + +  + KG 
Sbjct: 114 RGMEYLE----SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGG 164

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 72/306 (23%), Positives = 118/306 (38%), Gaps = 80/306 (26%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
           ++ L  +GEGS GK+Y  R  + G  VAI+      +KK   + +   +  L KL+HP++
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKD-RERILREIKILKKLKHPNI 59

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC--PENVLKWSDRLAILIGV 556
           V L     +         +K++LV EY   G     L +     E+  +       L  +
Sbjct: 60  VRLYDVFEDE--------DKLYLVMEYCEGGDLFDLLKKRGRLSEDEAR-----FYLRQI 106

Query: 557 AKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK--------- 605
             A+ +LHS  ++     +R L   NILLDE    KL+D+G++  ++  EK         
Sbjct: 107 LSALEYLHSKGIV-----HRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPE 161

Query: 606 ------LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG- 658
                 L  KG G                               D+++ G IL E L G 
Sbjct: 162 YMAPEVLLGKGYGKAV----------------------------DIWSLGVILYELLTGK 193

Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
           P   G  +   L +        G+ +   P      S E+  ++     K +  +P  R 
Sbjct: 194 PPFPGDDQLLELFKKI------GKPKPPFPPPEWDISPEAKDLI----RKLLVKDPEKRL 243

Query: 719 SFEDVL 724
           + E+ L
Sbjct: 244 TAEEAL 249

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.6 bits (204), Expect = 3e-16
 Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 11/170 (6%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLREN 223
           S +  + L    + G+  S+I R+  +  I +SNN+LSG +PD   +  +SL  L+L  N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 224 KLDSGLP--LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSL 281
                +P   +P  L T+ LS N+ SG IP   G  + L+ LDL  N L G  P+ L +L
Sbjct: 129 NFTGSIPRGSIP-NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 282 PNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQ 331
            ++ +L LASN L G +P++L    ++ S+   + +  G N LS + P +
Sbjct: 188 TSLEFLTLASNQLVGQIPREL---GQMKSL---KWIYLGYNNLSGEIPYE 231

Length = 968

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 54/293 (18%)

Query: 445 LSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLKKYSIQNLKVRLDF-----LSKLQHPHL 498
           L  +G GS G +YK + +  G  VA++    LKK S ++ K +        L +L HP++
Sbjct: 4   LRKLGSGSFGTVYKAKHKGTGKIVAVK---ILKKRSEKSKKDQTARREIRILRRLSHPNI 60

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V L+    +         + ++LV EY   G    +LS   P   L   +   I + + +
Sbjct: 61  VRLIDAFEDK--------DHLYLVMEYCEGGDLFDYLSRGGP---LSEDEAKKIALQILR 109

Query: 559 AVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
            + +LHS  +I     +R L   NILLDE+ + K++D+G++           K     + 
Sbjct: 110 GLEYLHSNGII-----HRDLKPENILLDENGVVKIADFGLA----------KKLLKSSSS 154

Query: 617 YGFLFICRTSA----ENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLN 671
                   T      E  V++        + DV++ G IL E L G P  +G+     L+
Sbjct: 155 LT--TFVGTPWYMAPE--VLLGGNGYGP-KVDVWSLGVILYELLTGKPPFSGENI---LD 206

Query: 672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
           ++       G     D    ++ S+E+  ++     KC+  +PS RP+ E++L
Sbjct: 207 QLQLIRRILGPPLEFDEPKWSSGSEEAKDLI----KKCLNKDPSKRPTAEEIL 255

Length = 260

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 67/309 (21%)

Query: 444 SLSFM---GEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDF----- 489
           ++ F+   GEG+ GK+YKG L       + T VAI++L   K+ +    KV+ +F     
Sbjct: 6   AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTL---KENA--EPKVQQEFRQEAE 60

Query: 490 -LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------- 540
            +S LQHP++V LLG C        +      +++EY+ +G     L  N P        
Sbjct: 61  LMSDLQHPNIVCLLGVC--------TKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAES 112

Query: 541 -----ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDY 594
                ++ L  SD L I I +A  + +L S      F +R L   N L+ E    K+SD+
Sbjct: 113 GDETVKSSLDCSDFLHIAIQIAAGMEYLSSH----HFVHRDLAARNCLVGEGLTVKISDF 168

Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           G+S  +   +    + +        L +     E ++      +   E D+++FG +L E
Sbjct: 169 GLSRDIYSADYYRVQSKSL------LPVRWMPPEAIL----YGKFTTESDIWSFGVVLWE 218

Query: 655 SLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEP 714
                       ++ L     F +Q+    I    +L  C ++  + V ++  +C    P
Sbjct: 219 IF----------SYGLQPYYGFSNQEVIEMIRSRQLL-PCPEDCPARVYALMIECWNEIP 267

Query: 715 SSRPSFEDV 723
           + RP F+D+
Sbjct: 268 ARRPRFKDI 276

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 69.1 bits (170), Expect = 6e-13
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 25/162 (15%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRS--LTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G GS G +Y     + G  +A++S  L+   +  ++ L+  +  LS LQHP++V   G  
Sbjct: 9   GRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSE 68

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDRLA--ILIGVAKAVH 561
            +    ++ NT  +FL  EY+  GS  + L +    PE V++   +    IL G+A    
Sbjct: 69  RD----EEKNTLNIFL--EYVSGGSLSSLLKKFGKLPEPVIR---KYTRQILEGLA---- 115

Query: 562 FLHS-SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
           +LHS  ++       +   NIL+D   + KL+D+G +  + +
Sbjct: 116 YLHSNGIVHRD----IKGANILVDSDGVVKLADFGCAKRLGD 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 74/316 (23%), Positives = 125/316 (39%), Gaps = 71/316 (22%)

Query: 443 DSLSFM---GEGSRGKLYKGRLENG------TYVAIRSLTFLKKYSIQNLKVRLDF---- 489
           D++      GEG+ GK++ G   +         VA+++L   K+ +  +   R DF    
Sbjct: 5   DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTL---KETASNDA--RKDFEREA 59

Query: 490 --LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAH-------LS 536
             L+  QH ++V   G C E             +V+EY+ +G      R+H        S
Sbjct: 60  ELLTNFQHENIVKFYGVCTEGDP--------PIMVFEYMEHGDLNKFLRSHGPDAAFLKS 111

Query: 537 ENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYG 595
            + P   L  S  L I + +A  + +L S      F +R L T N L+    + K+ D+G
Sbjct: 112 PDSPMGELTLSQLLQIAVQIASGMVYLASQ----HFVHRDLATRNCLVGYDLVVKIGDFG 167

Query: 596 IS--IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILL 653
           +S  +   ++ ++      P        I     E+++     ++   E DV++FG +L 
Sbjct: 168 MSRDVYTTDYYRVGGHTMLP--------IRWMPPESIM----YRKFTTESDVWSFGVVLW 215

Query: 654 ESLVGPIVT-GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
           E     I T GK   + L+           R +  P    TC  E    V  I   C   
Sbjct: 216 E-----IFTYGKQPWYGLSNEEVIECITQGRLLQRP---RTCPSE----VYDIMLGCWKR 263

Query: 713 EPSSRPSFEDVLWNLQ 728
           +P  R + +D+   LQ
Sbjct: 264 DPQQRINIKDIHERLQ 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 69/306 (22%), Positives = 118/306 (38%), Gaps = 56/306 (18%)

Query: 442 FDSLSFM---GEGSRGKLYKGRLEN-----GTYVAIRSL-TFLKKYSIQNLKVRLDFLSK 492
              L F+   GEG  GK+   R +      G  VA++SL    ++    + +  ++ L  
Sbjct: 3   KRHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRT 62

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
           L H ++V   G C      +      + L+ EY+P+GS R +L  +  +  LK     + 
Sbjct: 63  LDHENIVKYKGVC------EKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSS 116

Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS-IIMEEHE--KLEAK 609
            I   K + +L S          L   NIL++   + K+SD+G++ ++ E+ +   ++  
Sbjct: 117 QI--CKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEP 171

Query: 610 GEGPKARYG--FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA 667
           GE P   Y    L   + S+ +              DV++FG  L E          G+ 
Sbjct: 172 GESPIFWYAPECLRTSKFSSAS--------------DVWSFGVTLYELFT------YGDP 211

Query: 668 FLL---NEMASFGSQDGRRRIVDPVVLTTCSQESL-------SIVVSITNKCICPEPSSR 717
                   +   G   G+  +   + L     E L         V  +   C   EP  R
Sbjct: 212 SQSPPAEFLRMIGIAQGQMIVTRLLELLK-EGERLPRPPSCPDEVYDLMKLCWEAEPQDR 270

Query: 718 PSFEDV 723
           PSF D+
Sbjct: 271 PSFADL 276

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 66.6 bits (162), Expect = 4e-12
 Identities = 65/281 (23%), Positives = 124/281 (44%), Gaps = 42/281 (14%)

Query: 447 FMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL----DFLSKLQHPHLVSLL 502
            +G+G+ G+++KG L++ T VA+++    K+   Q LK++       L +  HP++V L+
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKT---CKEDLPQELKIKFLSEARILKQYDHPNIVKLI 58

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C +           +++V E +P G + + L +   E  LK    +   +  A  + +
Sbjct: 59  GVCTQR--------QPIYIVMELVPGGDFLSFLRKKKDE--LKTKQLVKFALDAAAGMAY 108

Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
           L S          L   N L+ E+ + K+SD+G+S       + E  G    +    + I
Sbjct: 109 LES---KNCIHRDLAARNCLVGENNVLKISDFGMS-------RQEDDGIYSSSGLKQIPI 158

Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
             T+ E     ++  R   E DV+++G +L E+    +    G   + N+ A    + G 
Sbjct: 159 KWTAPE----ALNYGRYSSESDVWSYGILLWETFSLGVCPYPG---MTNQQAREQVEKGY 211

Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
           R         +C Q+    V  +  +C   +P +RP F ++
Sbjct: 212 R--------MSCPQKCPDDVYKVMQRCWDYKPENRPKFSEL 244

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 7e-12
 Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 39/175 (22%)

Query: 154 FDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSAL 212
           FD     W+     +  L L +  L+G  P+ I ++  L  I +S N + G +P  + ++
Sbjct: 411 FDSTKGKWF-----IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465

Query: 213 TSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
           TSL VLDL                     S N F+G+IP+  G+L  L+ L+L+ N LSG
Sbjct: 466 TSLEVLDL---------------------SYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Query: 273 IPPSVLFSLPNISYLHLAS-NM-----LSGTLPKDLSCGSKLDSISDKRVVKFGG 321
             P+ L        LH AS N      L G +P   +CG  L S+  K  + FG 
Sbjct: 505 RVPAALGGRL----LHRASFNFTDNAGLCG-IPGLRACGPHL-SVGAKIGIAFGV 553

Length = 623

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 65.6 bits (160), Expect = 9e-12
 Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 43/286 (15%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRS-----LTFLKKYSIQNLKVRLDFLSKLQHPHLVSLL 502
           +G+G+ G +YKG L+  T VA+++        LK+  +Q  ++    L +  HP++V L+
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEI----LKQYDHPNIVKLI 58

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C++           +++V E +P GS    L +   +N L     L + +  A  + +
Sbjct: 59  GVCVQ--------KQPIYIVMELVPGGSLLTFLRK--KKNRLTVKKLLQMSLDAAAGMEY 108

Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
           L S          L   N L+ E+ + K+SD+G+S   EE   +    +G K     + I
Sbjct: 109 LESK---NCIHRDLAARNCLVGENNVLKISDFGMS--REEEGGIYTVSDGLKQ----IPI 159

Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
             T+ E     ++  R   E DV+++G +L E+         G            +Q  R
Sbjct: 160 KWTAPE----ALNYGRYTSESDVWSYGILLWETFSLGDTPYPG----------MSNQQTR 205

Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
            RI +        Q     +  +  +C   +P +RPSF ++   LQ
Sbjct: 206 ERI-ESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 67.1 bits (162), Expect = 1e-11
 Identities = 65/288 (22%), Positives = 119/288 (41%), Gaps = 29/288 (10%)

Query: 441 NFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVR-----LDFLSKLQH 495
           ++  L  +GEGS G++Y  R      VA++     KK   ++ +V      +  L+ L H
Sbjct: 1   SYRILRKLGEGSFGEVYLARDR--KLVALK--VLAKKLESKSKEVERFLREIQILASLNH 56

Query: 496 P-HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           P ++V L     + GS        ++LV EY+  GS    L +   +  L  S+ L IL 
Sbjct: 57  PPNIVKLYDFFQDEGS--------LYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILA 108

Query: 555 GVAKAVHFLHSSVISGSFSNR-LTTNNILLDEH-RIAKLSDYGISIIMEEHEKLEAKGEG 612
            +  A+ +LHS        +R +   NILLD   R+ KL D+G++ ++ +     +    
Sbjct: 109 QILSALEYLHSK----GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPAL 164

Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLN 671
           P    G        A  V++ + +       D+++ G  L E L G P   G+  +   +
Sbjct: 165 PSTSVGTPGYM---APEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATS 221

Query: 672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
           +      +     +  P+   +  +        +  K +  +P +R S
Sbjct: 222 QTLKIILELPTPSLASPLS-PSNPELISKAASDLLKKLLAKDPKNRLS 268

Length = 384

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 18/163 (11%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
           F+ L  +G+G  G++YK R    G  VAI+ +    K   + +   +  L K +HP++V 
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVK 61

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
             G             +++++V E+   GS +  L        L  S    +   + K +
Sbjct: 62  YYG-SYLKK-------DELWIVMEFCSGGSLKDLLKSTN--QTLTESQIAYVCKELLKGL 111

Query: 561 HFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIME 601
            +LHS  +I     +R +   NILL      KL D+G+S  + 
Sbjct: 112 EYLHSNGII-----HRDIKAANILLTSDGEVKLIDFGLSAQLS 149

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 27/168 (16%)

Query: 449 GEGSRGKLYKG-RLENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G G+ G +YKG  LE G +VAI+  SL  +K+ +++++   +D L  L+HP++V  +G  
Sbjct: 9   GRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGS- 67

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYR--AHLSENCPENVLKWSDRLAILIG-VAKAVHF 562
           IE+        + ++++ EY  NGS R         PE++      +A+ +  V + + +
Sbjct: 68  IETS-------DSLYIILEYAENGSLRQIIKKFGPFPESL------VAVYVYQVLQGLAY 114

Query: 563 LH-SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
           LH   VI     +R +   NIL  +  + KL+D+G++  + +  K +A
Sbjct: 115 LHEQGVI-----HRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDA 157

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 73/298 (24%), Positives = 130/298 (43%), Gaps = 69/298 (23%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +G G  G++++G   N T VA+++L         FL +  I         + KL+HP L+
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQI---------MKKLRHPKLI 64

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L   C    + ++     +++V E +  GS   +L        LK    + +   VA  
Sbjct: 65  QLYAVC----TLEEP----IYIVTELMKYGSLLEYLQGGAGRA-LKLPQLIDMAAQVASG 115

Query: 560 VHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYG 618
           + +L +     ++ +R L   N+L+ E+ I K++D+G++ +++E           +AR G
Sbjct: 116 MAYLEAQ----NYIHRDLAARNVLVGENNICKVADFGLARVIKEDIY--------EAREG 163

Query: 619 FLF-ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT-------GKGEAFLL 670
             F I  T+ E         R  ++ DV++FG +L E     IVT       G   A +L
Sbjct: 164 AKFPIKWTAPE----AALYNRFSIKSDVWSFGILLTE-----IVTYGRMPYPGMTNAEVL 214

Query: 671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
            ++      D   R+  P     C +E   I++     C   +P  RP+FE + W L+
Sbjct: 215 QQV------DQGYRMPCP---PGCPKELYDIML----DCWKEDPDDRPTFETLQWKLE 259

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 63.4 bits (154), Expect = 7e-11
 Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 69/309 (22%)

Query: 448 MGEGSRGK--LYKGRLEN---GTYVAIRSLTFLKKYSIQN---LKVRLDFLSKLQHPHLV 499
           +GEG  GK  LY     N   G  VA+++L   ++   QN    K  ++ L  L H ++V
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTLK--RECGQQNTSGWKKEINILKTLYHENIV 69

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
              G C E G +       + L+ EY+P GS R +L    P++ L  +  L     + + 
Sbjct: 70  KYKGCCSEQGGK------GLQLIMEYVPLGSLRDYL----PKHKLNLAQLLLFAQQICEG 119

Query: 560 VHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKA 615
           + +LHS      + +R L   N+LLD  R+ K+ D+G++  +    E+ ++   G+ P  
Sbjct: 120 MAYLHSQ----HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPV- 174

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE----------------SLVGP 659
              F +      EN        +     DV++FG  L E                 ++GP
Sbjct: 175 ---FWYAVECLKEN--------KFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGP 223

Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
              G+     L E+   G      R+  P     C QE    V  +   C   E   RP+
Sbjct: 224 -KQGQMTVVRLIELLERG-----MRLPCP---KNCPQE----VYILMKNCWETEAKFRPT 270

Query: 720 FEDVLWNLQ 728
           F  ++  L+
Sbjct: 271 FRSLIPILK 279

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 69/289 (23%), Positives = 116/289 (40%), Gaps = 67/289 (23%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G++++G  +N   VAI+ L        Q+ +  +  L +L+H HL+SL   C  
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVC-- 71

Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE-NVLKWSDRLAILIGVAKAVHFLHSS 566
                 S    V+++ E +  GS  A L    PE  VL  +  + +   VA+ + +L   
Sbjct: 72  ------SVGEPVYIITELMEKGSLLAFL--RSPEGQVLPVASLIDMACQVAEGMAYLEE- 122

Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE------HEKLEAKGEGPKARYGFL 620
               S    L   NIL+ E  + K++D+G++ +++E       +K+  K   P+A     
Sbjct: 123 --QNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEA----- 175

Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT-GK--------GEAFLLN 671
                                + DV++FG +L E     + T G+         E +   
Sbjct: 176 -------------ASHGTFSTKSDVWSFGILLYE-----MFTYGQVPYPGMNNHEVYDQ- 216

Query: 672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
             A +       R+  P     C QE    +  I  +C   EP  RPSF
Sbjct: 217 ITAGY-------RMPCP---AKCPQE----IYKIMLECWAAEPEDRPSF 251

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 28/168 (16%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
           FD L  +GEGS G +YK    E G  VAI+      +  +Q +   +  L +   P++V 
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIK--VVPVEEDLQEIIKEISILKQCDSPYIVK 62

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
             G    S  ++      +++V EY   GS    + +      L   +  AIL    K +
Sbjct: 63  YYG----SYFKN----TDLWIVMEYCGAGSVS-DIMKIT-NKTLTEEEIAAILYQTLKGL 112

Query: 561 HFLHSSVI------SGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
            +LHS+        +G         NILL+E   AKL+D+G+S  + +
Sbjct: 113 EYLHSNKKIHRDIKAG---------NILLNEEGQAKLADFGVSGQLTD 151

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 28/167 (16%)

Query: 448 MGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++ +GRL    +    VAI++L    K    + K RLDFL+      +  HP+
Sbjct: 12  IGGGEFGEVCRGRLKLPGKKEIDVAIKTL----KAGSSD-KQRLDFLTEASIMGQFDHPN 66

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G   +S          V ++ EY+ NGS    L EN  +        + +L G+A
Sbjct: 67  IIRLEGVVTKS--------RPVMIITEYMENGSLDKFLREN--DGKFTVGQLVGMLRGIA 116

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
             + +L S +        L   NIL++ + + K+SD+G+S  +E+ E
Sbjct: 117 SGMKYL-SEM--NYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE 160

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 28/85 (32%), Positives = 48/85 (56%)

Query: 123 LDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQF 182
           L + +  L G IP+ IS+L  LQ++ +  N    N+P    S+++L VL L  N   G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 183 PSSICRIATLTDIAMSNNELSGKLP 207
           P S+ ++ +L  + ++ N LSG++P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 74/289 (25%), Positives = 123/289 (42%), Gaps = 48/289 (16%)

Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTF-----LKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +G G+ G+++ GRL  + T VA++S        LK   +Q  ++    L +  HP++V L
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARI----LKQYSHPNIVRL 58

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           +G C +           +++V E +  G +   L    P   LK  + + ++   A  + 
Sbjct: 59  IGVCTQK--------QPIYIVMELVQGGDFLTFLRTEGPR--LKVKELIQMVENAAAGME 108

Query: 562 FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           +L S          L   N L+ E  + K+SD+G+S   EE + + A   G K     + 
Sbjct: 109 YLESKH---CIHRDLAARNCLVTEKNVLKISDFGMS--REEEDGVYASTGGMKQ----IP 159

Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM--ASFGSQ 679
           +  T+ E     ++  R   E DV++FG +L             EAF L  +  A+  +Q
Sbjct: 160 VKWTAPE----ALNYGRYSSESDVWSFGILLW------------EAFSLGAVPYANLSNQ 203

Query: 680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
             R  I   V L  C +     V  +  +C   +P  RPSF  V   LQ
Sbjct: 204 QTREAIEQGVRL-PCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ 251

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 71/306 (23%), Positives = 120/306 (39%), Gaps = 64/306 (20%)

Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +GEG+ GK++     N         VA+++L    + + Q+ +   + L+ LQH H+V  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAH--------LSENCPENVLKWSDR 549
            G C E           + +V+EY+ +G      R+H          E+     L     
Sbjct: 73  YGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQM 124

Query: 550 LAILIGVAK------AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH 603
           LAI   +A       ++HF+H           L T N L+ +  + K+ D+G+S  +   
Sbjct: 125 LAIASQIASGMVYLASLHFVHRD---------LATRNCLVGQGLVVKIGDFGMSRDIYST 175

Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT- 662
           +     G         L I     E+++     ++   E D+++FG +L E     I T 
Sbjct: 176 DYYRVGGR------TMLPIRWMPPESIL----YRKFTTESDIWSFGVVLWE-----IFTY 220

Query: 663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED 722
           GK   + L+   +       R +  P    TC  E    V +I   C   EP  R   +D
Sbjct: 221 GKQPWYQLSNTEAIECITQGRELERP---RTCPPE----VYAIMQGCWQREPQQRMVIKD 273

Query: 723 VLWNLQ 728
           +   LQ
Sbjct: 274 IHSRLQ 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 59.0 bits (144), Expect = 2e-09
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 45/175 (25%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIR--SLTFL----KKYSIQNLKVRLDFLSKLQHPHLVSL 501
           G+GS GK+Y  R   +G    ++   L+ +    ++ ++  +K+    L KL HP+++  
Sbjct: 9   GKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKI----LKKLNHPNII-- 62

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC------PEN-VLKWSDRLAILI 554
                ES  +      K+ +V EY   G     + +        PE  +L W       +
Sbjct: 63  --KYYESFEEKG----KLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDW------FV 110

Query: 555 GVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
            +  A+ +LHS         +     +   NI L  + + KL D+GIS ++    
Sbjct: 111 QLCLALKYLHS--------RKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV 157

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 26/88 (29%), Positives = 52/88 (59%)

Query: 99  LSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNV 158
           L L + G+ G +P+ I +L  L+ +++S N + G IP  +  +  L+ L +  N F+ ++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 159 PDWWDSLSNLTVLSLKSNQLKGQFPSSI 186
           P+    L++L +L+L  N L G+ P+++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 61/304 (20%)

Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +  +G+G+ G +   R +      G  VA++ L       +++ +  ++ L  LQH ++V
Sbjct: 9   IQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIV 68

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
              G C  +G         + LV EY+P GS R +L ++     L     L     + K 
Sbjct: 69  KYKGVCYSAGR------RNLRLVMEYLPYGSLRDYLQKH--RERLDHRKLLLYASQICKG 120

Query: 560 VHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKA 615
           + +L S      + +R L T NIL++     K+ D+G++ ++   +E+ K+   GE P  
Sbjct: 121 MEYLGSK----RYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPI- 175

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE----------------SLVGP 659
              F +   +  E+   V          DV++FG +L E                 ++G 
Sbjct: 176 ---FWYAPESLTESKFSV--------ASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGN 224

Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
              G+   + L E+     ++  R    P     C  E    + +I  +C   +PS RPS
Sbjct: 225 DKQGQMIVYHLIELL----KNNGRLPAPP----GCPAE----IYAIMKECWNNDPSQRPS 272

Query: 720 FEDV 723
           F ++
Sbjct: 273 FSEL 276

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 67/293 (22%), Positives = 112/293 (38%), Gaps = 64/293 (21%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G+G  G +  G       VA++ L      + Q        ++ L+HP+LV LLG  ++
Sbjct: 14  IGKGEFGDVMLGDYRGQK-VAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQ 71

Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      +++V EY+  GS   +L       V+  + +L   + V + + +L    
Sbjct: 72  GNP--------LYIVTEYMAKGSLVDYLRSR-GRAVITLAQQLGFALDVCEGMEYLEEK- 121

Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
              +F +R L   N+L+ E  +AK+SD+G+           AK        G L +  T+
Sbjct: 122 ---NFVHRDLAARNVLVSEDLVAKVSDFGL-----------AKEASQGQDSGKLPVKWTA 167

Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIV 686
            E   +      TK   DV++FG                   LL E+ SFG     R  +
Sbjct: 168 PE--ALREKKFSTK--SDVWSFG------------------ILLWEIYSFGRVPYPRIPL 205

Query: 687 DPVVL-----------TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
             VV              C  E    V  +   C   +P+ RP+F+ +   L 
Sbjct: 206 KDVVPHVEKGYRMEAPEGCPPE----VYKVMKDCWELDPAKRPTFKQLREQLA 254

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 56.9 bits (137), Expect = 9e-09
 Identities = 71/305 (23%), Positives = 123/305 (40%), Gaps = 70/305 (22%)

Query: 448 MGEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYS----IQNLKVRLDFLSKLQHPHL 498
           +GE + GK+YKG L     ++   VAI++L   K  +        +     +++L HP++
Sbjct: 13  LGECAFGKIYKGHLYLPGMDHAQLVAIKTL---KDINNPQQWGEFQQEASLMAELHHPNI 69

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------------ENVL 544
           V LLG   +           V +++EY+  G     L    P              ++ L
Sbjct: 70  VCLLGVVTQE--------QPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSL 121

Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS--IIMEE 602
              D L I I +A  + +L S          L   NIL+ E    K+SD G+S  I   +
Sbjct: 122 DHGDFLHIAIQIAAGMEYLSSHFF---VHKDLAARNILIGEQLHVKISDLGLSREIYSAD 178

Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT 662
           + +++ K   P        I     E ++      +   + D+++FG +L E        
Sbjct: 179 YYRVQPKSLLP--------IRWMPPEAIMY----GKFSSDSDIWSFGVVLWEIF------ 220

Query: 663 GKGEAFLLNEMASFGSQDG----RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
               +F L     F +Q+     R+R + P     CS++    + S+  +C    PS RP
Sbjct: 221 ----SFGLQPYYGFSNQEVIEMVRKRQLLP-----CSEDCPPRMYSLMTECWQEGPSRRP 271

Query: 719 SFEDV 723
            F+D+
Sbjct: 272 RFKDI 276

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 57/206 (27%), Positives = 78/206 (37%), Gaps = 43/206 (20%)

Query: 195 IAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQ 253
           + + N  L G +P D+S L  L  ++L  N +                      G IP  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR---------------------GNIPPS 461

Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISD 313
            G +  L+ LDLS+N  +G  P  L  L ++  L+L  N LSG +P  L  G +L   + 
Sbjct: 462 LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL--GGRLLHRAS 519

Query: 314 KRVVKFGGNCLSYDTPSQHKEAFCKETNGSKSSRGREIGLIAAIAFGAVLVLVLSAFGVI 373
                  G C     P            G   S G +IG    IAFG     V  AF  +
Sbjct: 520 FNFTDNAGLC---GIPGLR-------ACGPHLSVGAKIG----IAFG-----VSVAFLFL 560

Query: 374 IYCKRCCTKGRQEQSTRPKIVQDNAP 399
           + C  C  K RQ      +I    AP
Sbjct: 561 VICAMCWWKRRQNILRAQRIAAREAP 586

Length = 623

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 37/169 (21%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAI------RSLTFLKKYSIQNLKVRLDFLSK 492
           N ++ L  +GEG+ G + K R    G  VAI           +KK +++ +KV    L +
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKV----LRQ 56

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKW 546
           L+H ++V+L       G        +++LV+EY+         +    L    P+ V  +
Sbjct: 57  LRHENIVNLKEAFRRKG--------RLYLVFEYVERTLLELLEASPGGLP---PDAVRSY 105

Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
             +L       +A+ + HS  I       +   NIL+ E  + KL D+G
Sbjct: 106 IWQLL------QAIAYCHSHNI---IHRDIKPENILVSESGVLKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 23/163 (14%)

Query: 447 FMGEGSRGKLYKG-RLENGTYVAIRSLTF--LKKYSIQNLKVRLDFLSKLQHPHLVSLLG 503
            +G G+ GK+Y    L+ G  +A++ +        +I+ +   +  L  L+HP+LV   G
Sbjct: 7   KIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYG 66

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYR--AHLSENCPENVLKWSDRLAILIGVAKAVH 561
             +E       +  KV++  EY   G+            E+V++    L +L G+A    
Sbjct: 67  --VEV------HREKVYIFMEYCSGGTLEELLEHGRILDEHVIR-VYTLQLLEGLA---- 113

Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
           +LHS  I     +R +   NI LD + + KL D+G ++ ++ +
Sbjct: 114 YLHSHGIV----HRDIKPANIFLDHNGVIKLGDFGCAVKLKNN 152

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 22/172 (12%)

Query: 441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVA---IRSLTFLKKYSIQNLKVRLDFLSKLQHP 496
           +F+ L  +G+G+ GK+   +  +     A   +     ++K S++N+      L +L HP
Sbjct: 1   HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHP 60

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILI 554
            LV+L         QD+ N   ++LV + +  G  R HLS+     E  +K+      + 
Sbjct: 61  FLVNL-----WYSFQDEEN---MYLVVDLLLGGDLRYHLSQKVKFSEEQVKF-----WIC 107

Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
            +  A+ +LHS  I       +  +NILLDE     ++D+ I+  +      
Sbjct: 108 EIVLALEYLHSKGI---IHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLT 156

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 74/293 (25%), Positives = 123/293 (41%), Gaps = 51/293 (17%)

Query: 444 SLSFM---GEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPH 497
            L+F+   G G  G ++ G+      VAI+ +      +   I+  KV    + KL HP+
Sbjct: 5   ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKV----MMKLSHPN 60

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           LV L G C +           +F+V EY+ NG    +L E   +  L     L +   V 
Sbjct: 61  LVQLYGVCTKQRP--------IFIVTEYMANGCLLNYLRER--KGKLGTEWLLDMCSDVC 110

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
           +A+ +L S+     F +R L   N L+ E  + K+SD+G++  + + +   +  +G K  
Sbjct: 111 EAMEYLESN----GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSS--QGTK-- 162

Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG--EAFLLNEMA 674
               F  + +      V D  R   + DV++FG ++ E        GK   E F  +E+ 
Sbjct: 163 ----FPVKWAPPE---VFDYSRFSSKSDVWSFGVLMWEVFSE----GKMPYERFSNSEVV 211

Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
              S     R+  P        E    V +I   C   +P  RP+F+ +L  L
Sbjct: 212 ESVSAG--YRLYRP---KLAPTE----VYTIMYSCWHEKPEDRPAFKKLLSQL 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 57/308 (18%)

Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +GEG+ GK++     N         VA+++L      + ++     + L+ LQH H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 72

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAH------LSENCPENVLKWSDRLA 551
            G C+E         + + +V+EY+ +G      RAH      ++E      L  S  L 
Sbjct: 73  YGVCVEG--------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLH 124

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
           I   +A  + +L S      F +R L T N L+ E+ + K+ D+G+S  +   +     G
Sbjct: 125 IAQQIAAGMVYLASQ----HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGG 180

Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
                 +  L I     E+++     ++   E DV++ G +L E        GK   + L
Sbjct: 181 ------HTMLPIRWMPPESIM----YRKFTTESDVWSLGVVLWEIF----TYGKQPWYQL 226

Query: 671 --NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV---LW 725
             NE+    +Q   R +  P    TC +E   +++     C   EP  R + +++   L 
Sbjct: 227 SNNEVIECITQG--RVLQRP---RTCPKEVYDLMLG----CWQREPHMRLNIKEIHSLLQ 277

Query: 726 NLQYAAQV 733
           NL  A+ V
Sbjct: 278 NLAKASPV 285

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 69

Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 70  VSEE---------PIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 115

Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 116 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 167

Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 168 KWTAPEAALY---GRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 210

Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   EP  RP+FE
Sbjct: 211 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 74/314 (23%), Positives = 121/314 (38%), Gaps = 82/314 (26%)

Query: 448 MGEGSRGKLYKG--RLENGTY----VAIRSLTFLKKYSIQNLKVRLDFL------SKLQH 495
           +G G+ G++Y+G  R  +G      VA+++L        +      DFL      SK  H
Sbjct: 14  LGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDE-----SDFLMEALIMSKFNH 68

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLA 551
            ++V L+G   E            F++ E +  G  ++ L EN P     + L   D L 
Sbjct: 69  QNIVRLIGVSFE--------RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLF 120

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLD---EHRIAKLSDYGIS--IIMEEHEK 605
               VAK   +L  +     F +R +   N LL      R+AK++D+G++  I    + +
Sbjct: 121 CARDVAKGCKYLEEN----HFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYR 176

Query: 606 ------LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLV 657
                 L  K   P+A    +F  +T                  DV++FG +L E  SL 
Sbjct: 177 KGGRAMLPIKWMPPEAFLDGIFTSKT------------------DVWSFGVLLWEIFSLG 218

Query: 658 GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPV--VLTTCSQESLSIVVSITNKCICPEPS 715
                G+    ++  +   G  D  +    PV  ++T C Q                 P 
Sbjct: 219 YMPYPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQ---------------HTPE 263

Query: 716 SRPSFEDVLWNLQY 729
            RP+F  +L  +QY
Sbjct: 264 DRPNFATILERIQY 277

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 63/283 (22%), Positives = 114/283 (40%), Gaps = 42/283 (14%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G ++ G       VAI+++      S ++       + KL HP LV L G C E
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIR-EGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE 70

Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                    + + LV+E++ +G    +L              L + + V + + +L SS 
Sbjct: 71  R--------SPICLVFEFMEHGCLSDYLRAQ--RGKFSQETLLGMCLDVCEGMAYLESS- 119

Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
              +  +R L   N L+ E+++ K+SD+G++  + + +   + G     ++       +S
Sbjct: 120 ---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKW-------SS 169

Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD--GRRR 684
            E    V    +   + DV++FG ++ E      V  +G+    N   S   +      R
Sbjct: 170 PE----VFSFSKYSSKSDVWSFGVLMWE------VFSEGKTPYENRSNSEVVETINAGFR 219

Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
           +  P +    SQ     V  +   C    P  RPSF  +L  L
Sbjct: 220 LYKPRL---ASQS----VYELMQHCWKERPEDRPSFSLLLHQL 255

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 65/233 (27%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL--------TFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +G G  G+++ G     T VA+++L         FL++  I         + KL+H  LV
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQI---------MKKLRHDKLV 64

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE-NVLKWSDRLAILIGVAK 558
            L   C        S    +++V EY+  GS    L     E   L+    + +   +A+
Sbjct: 65  QLYAVC--------SEEEPIYIVTEYMSKGSLLDFLKS--GEGKKLRLPQLVDMAAQIAE 114

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE-------KLEAKG 610
            + +L S     ++ +R L   NIL+ E+ + K++D+G++ ++E+ E       K   K 
Sbjct: 115 GMAYLESR----NYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKW 170

Query: 611 EGPKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT 662
             P+A  YG                   R  ++ DV++FG +L E     IVT
Sbjct: 171 TAPEAANYG-------------------RFTIKSDVWSFGILLTE-----IVT 199

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 36/187 (19%)

Query: 447 FMGEGSRGKLYKGRL-------ENGTYVAIRSLTFLKKYSIQNLKVRL----DFLSKLQH 495
           F+G G+ G++Y+G              VA+++L   +K +    K         +S   H
Sbjct: 2   FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTL---RKGATDQEKKEFLKEAHLMSNFNH 58

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SY-RAHLSENCPENVLKWSDRLA 551
           P++V LLG C+ +  Q        +++ E +  G   SY R    E     +L   + L 
Sbjct: 59  PNIVKLLGVCLLNEPQ--------YIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLD 110

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEH-----RIAKLSDYGISIIMEEHEK 605
           I + VAK   +L        F +R L   N L+ E      R+ K+ D+G++  + + + 
Sbjct: 111 ICLDVAKGCVYLEQM----HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDY 166

Query: 606 LEAKGEG 612
              +GEG
Sbjct: 167 YRKEGEG 173

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 67/300 (22%), Positives = 114/300 (38%), Gaps = 64/300 (21%)

Query: 448 MGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDF------LSKLQHPH 497
           +G+G+   +YKG L        +     +    K    + +  L F      +S+L H H
Sbjct: 3   LGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKH 62

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA--HLSENCPENVLKWSDRLAILIG 555
           LV L G C+   +          +V EY+  G      H  +N     L W  +L +   
Sbjct: 63  LVKLYGVCVRDENI---------MVEEYVKFGPLDVFLHREKNNVS--LHW--KLDVAKQ 109

Query: 556 VAKAVHFLHS-SVISGSFSNRLTTNNILLDEHRI-------AKLSDYGISIIMEEHEKLE 607
           +A A+H+L    ++ G+   +    NIL+  + +        KLSD GI I +   E+  
Sbjct: 110 LASALHYLEDKKLVHGNVCGK----NILVARYGLNEGYVPFIKLSDPGIPITVLSREERV 165

Query: 608 AKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA 667
            +   P          R    +           +  D ++FG  LLE      +   GE 
Sbjct: 166 ER--IPWIAPEC---IRNGQAS---------LTIAADKWSFGTTLLE------ICSNGEE 205

Query: 668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
                +++  S +  R   D   L       L+   ++ N+C   +P+ RPSF  +L +L
Sbjct: 206 ----PLSTLSSSEKERFYQDQHRLPMPDCAELA---NLINQCWTYDPTKRPSFRAILRDL 258

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 62/278 (22%), Positives = 121/278 (43%), Gaps = 44/278 (15%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T + +  +Q  ++    + KL+H  LV L   
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQI----MKKLRHDKLVPLYAV 69

Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V E++  GS    L E   + +     +L  L+ +A  +    
Sbjct: 70  VSEE---------PIYIVTEFMGKGSLLDFLKEGDGKYL-----KLPQLVDMAAQIADGM 115

Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + +   ++ +R L   NIL+ ++ + K++D+G++ ++E++E          AR G  F  
Sbjct: 116 AYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEY--------TARQGAKFPI 167

Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E +    V   G   ++N       + G R
Sbjct: 168 KWTAPEAALY---GRFTIKSDVWSFGILLTELVTKGRVPYPG---MVNREVLEQVERGYR 221

Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
                     C Q     +  +   C   +P  RP+FE
Sbjct: 222 --------MPCPQGCPESLHELMKLCWKKDPDERPTFE 251

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 62/293 (21%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G+G  G +  G    G  VA++ +      + Q        +++L+H +LV LLG  +E
Sbjct: 14  IGKGEFGDVMLGDYR-GNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 70

Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      +++V EY+  GS   +L      +VL     L   + V +A+ +L ++ 
Sbjct: 71  EKG-------GLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEAN- 121

Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGIS---IIMEEHEKLEAKGEGPKARYGFLFIC 623
              +F +R L   N+L+ E  +AK+SD+G++      ++  KL  K   P+A     F  
Sbjct: 122 ---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFST 178

Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           ++                  DV++FG                   LL E+ SFG     R
Sbjct: 179 KS------------------DVWSFG------------------ILLWEIYSFGRVPYPR 202

Query: 684 RIVDPVVLTT-------CSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY 729
             +  VV                 +V  +  +C   + ++RPSF  +   L++
Sbjct: 203 IPLKDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEH 255

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 38/183 (20%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK-------VR-LDFLSK 492
           ++ L+ +GEG+ G +YK R L  G +VA      LKK  +   +       +R +  L +
Sbjct: 1   YEELAEIGEGAYGTVYKARDLNTGRFVA------LKKVRVPLSEEGIPLSTLREIALLKQ 54

Query: 493 LQ---HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           L+   HP++V LL  C   G + D    K+ LV+E++      A     CP+  L   + 
Sbjct: 55  LESFEHPNIVRLLDVC--HGPRTDREL-KLTLVFEHVDQD--LATYLSKCPKPGLP-PET 108

Query: 550 LAILIG-VAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYGISIIMEEH 603
           +  L+  + + V FLH        S+R     L   NIL+      K++D+G++ I    
Sbjct: 109 IKDLMRQLLRGVDFLH--------SHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE 160

Query: 604 EKL 606
             L
Sbjct: 161 MAL 163

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 70/305 (22%), Positives = 127/305 (41%), Gaps = 59/305 (19%)

Query: 448 MGEGSRGKL----YKGRLEN-GTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLVSL 501
           +GEG  GK+    Y    +N G  VA++SL      + I +LK  ++ L  L H ++V  
Sbjct: 12  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C E G       N + L+ E++P+GS + +L  N  +  LK   + A+ I   K + 
Sbjct: 72  KGICTEDGG------NGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQI--CKGMD 123

Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEGPKARYGF 619
           +L S      + +R L   N+L++     K+ D+G++  I  + E    K +     + +
Sbjct: 124 YLGSR----QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWY 179

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE----------------SLVGPIVTG 663
              C   +          +  +  DV++FG  L E                 ++GP    
Sbjct: 180 APECLIQS----------KFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQ 229

Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
                L+  +     ++G+R    P     C +E    V  +  KC   +PS R +F+++
Sbjct: 230 MTVTRLVRVL-----EEGKRLPRPP----NCPEE----VYQLMRKCWEFQPSKRTTFQNL 276

Query: 724 LWNLQ 728
           +   +
Sbjct: 277 IEGFE 281

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 77/298 (25%), Positives = 123/298 (41%), Gaps = 61/298 (20%)

Query: 448 MGEGSRGKLYKG-RLENGTYVAIRSLTFLKK--------YSIQNLKVRLDFLSKLQHPHL 498
           +G+G+  K++KG R E G Y  +     L K        YS    +     +S+L H HL
Sbjct: 3   LGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAA-SMMSQLSHKHL 61

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V   G C+     D+S      +V EY+  GS   +L +N  +N++  S +L +   +A 
Sbjct: 62  VLNYGVCV---CGDES-----IMVQEYVKFGSLDTYLKKN--KNLINISWKLEVAKQLAW 111

Query: 559 AVHFLH-SSVISGSFSNRLTTNNILL--DEHRIA------KLSDYGISIIMEEHEKLEAK 609
           A+HFL    +  G+   +    N+LL  +E R        KLSD GISI +   E L  +
Sbjct: 112 ALHFLEDKGLTHGNVCAK----NVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLER 167

Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL 669
                       I     E    + + Q   L  D ++FG  L E   G    G      
Sbjct: 168 ------------IPWVPPE---CIENPQNLSLAADKWSFGTTLWEIFSG----GDKPLSA 208

Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
           L+        + R ++  P           + + ++ N+C+  EP  RPSF  ++ +L
Sbjct: 209 LDSQKKLQFYEDRHQLPAP---------KWTELANLINQCMDYEPDFRPSFRAIIRDL 257

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 24/159 (15%)

Query: 447 FMGEGSRGKLYKG-RLENGTYVAIRSLTFLK-----KYSIQNLKVRLDFLSKLQHPHLVS 500
            +G GS G +Y+G  L++G + A++ ++        + +++ L+  +  LSKLQHP++V 
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLAILIGVAK 558
            L      G++ + +   +FL  E +P GS    L +  + PE V++   R  IL+G+  
Sbjct: 67  YL------GTEREEDNLYIFL--ELVPGGSLAKLLKKYGSFPEPVIRLYTR-QILLGLE- 116

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
              +LH      +    +   NIL+D + + KL+D+G++
Sbjct: 117 ---YLHD---RNTVHRDIKGANILVDTNGVVKLADFGMA 149

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 71/297 (23%), Positives = 119/297 (40%), Gaps = 55/297 (18%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDF------LSKLQHPHLVSL 501
           +GEG+ GK++     N +    + L  +K      L  R DF      L+ LQH H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 72

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-------------LKWSD 548
            G C +         + + +V+EY+ +G     L  + P+ +             L  S 
Sbjct: 73  YGVCGDG--------DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ 124

Query: 549 RLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
            L I   +A  + +L S      F +R L T N L+  + + K+ D+G+S  +   +   
Sbjct: 125 MLHIASQIASGMVYLASQ----HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYR 180

Query: 608 AKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT-GKGE 666
             G      +  L I     E+++     ++   E DV++FG IL E     I T GK  
Sbjct: 181 VGG------HTMLPIRWMPPESIM----YRKFTTESDVWSFGVILWE-----IFTYGKQP 225

Query: 667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            F L+           R +  P V   C +E   I++     C   EP  R + +++
Sbjct: 226 WFQLSNTEVIECITQGRVLERPRV---CPKEVYDIMLG----CWQREPQQRLNIKEI 275

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 14/151 (9%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G+G+ GK+YK +  E G   A + +    +  +++  V ++ L+   HP++V LLG   
Sbjct: 20  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFY 79

Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
             G        K++++ E+ P G+  A + E   +  L       I   + +A+ +LHS 
Sbjct: 80  WDG--------KLWIMIEFCPGGAVDAIMLE--LDRGLTEPQIQVICRQMLEALQYLHSM 129

Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            I       L   N+LL      KL+D+G+S
Sbjct: 130 KI---IHRDLKAGNVLLTLDGDIKLADFGVS 157

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 12/215 (5%)

Query: 67  YNGHPIPNQTLSES-FSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRL-SSLELLD 124
              + +P  +L  +   + S ++ L  LT L  L L +  I   +P  I  L S+L+ LD
Sbjct: 88  NLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELD 146

Query: 125 MSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPS 184
           +S N +  ++PS +  L  L+ L +  N   D      + LSNL  L L  N++    P 
Sbjct: 147 LSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN-LSNLNNLDLSGNKIS-DLPP 203

Query: 185 SICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKL---DSGLPLMPKGLVTVLL 241
            I  ++ L ++ +SNN +   L  +S L +L  L+L  NKL      +  +   L T+ L
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS-NLETLDL 262

Query: 242 SRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS 276
           S N  S       G L  L+ LDLS N LS   P 
Sbjct: 263 SNNQISSISSL--GSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 70/307 (22%), Positives = 125/307 (40%), Gaps = 66/307 (21%)

Query: 448 MGEGSRGKLYKG---RLENGTYVAIRSLTFLKKYS----IQNLKVRLDFLSKLQHPHLVS 500
           +GEG  GK+ K    RL+        ++  LK+ +    +++L    + L ++ HPH++ 
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE---------------------NC 539
           L G C + G         + L+ EY   GS R+ L E                     N 
Sbjct: 68  LYGACSQDGP--------LLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNP 119

Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISI 598
            E  L   D ++    +++ + +L          +R L   N+L+ E R  K+SD+G+S 
Sbjct: 120 DERALTMGDLISFAWQISRGMQYLAEM----KLVHRDLAARNVLVAEGRKMKISDFGLSR 175

Query: 599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SL 656
            + E +    + +G   R    ++   S  + +          + DV++FG +L E  +L
Sbjct: 176 DVYEEDSYVKRSKG---RIPVKWMAIESLFDHIYTT-------QSDVWSFGVLLWEIVTL 225

Query: 657 VGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
            G    G     L N + +        R+  P     CS+E  ++++     C   EP  
Sbjct: 226 GGNPYPGIAPERLFNLLKT------GYRMERP---ENCSEEMYNLML----TCWKQEPDK 272

Query: 717 RPSFEDV 723
           RP+F D+
Sbjct: 273 RPTFADI 279

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 63/293 (21%), Positives = 124/293 (42%), Gaps = 58/293 (19%)

Query: 448 MGEGSRGKLYKGRLEN-GTYVAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +     VA+++L         FLK+ ++         + +++HP+L
Sbjct: 14  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 64

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E   + V        +L+ +A 
Sbjct: 65  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRECNRQEV-----NAVVLLYMAT 111

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
            +      +   +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 112 QISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 163

Query: 618 GFLF-ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS- 675
           G  F I  T+ E++       +  ++ DV+ FG +L E     I T     +   +++  
Sbjct: 164 GAKFPIKWTAPESLA----YNKFSIKSDVWAFGVLLWE-----IATYGMSPYPGIDLSQV 214

Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
           +   +   R+  P     C  +    V  +   C    PS RPSF ++    +
Sbjct: 215 YELLEKGYRMERP---EGCPPK----VYELMRACWQWNPSDRPSFAEIHQAFE 260

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD----------- 488
            ++    +GEG+   +YK R  E G  VAI      KK  +   K   D           
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAI------KKIKLGERKEAKDGINFTALREIK 54

Query: 489 FLSKLQHPHLVSLL---GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLK 545
            L +L+HP+++ LL   GH         SN N   LV+E++   +    + ++    VL 
Sbjct: 55  LLQELKHPNIIGLLDVFGH--------KSNIN---LVFEFME--TDLEKVIKD-KSIVLT 100

Query: 546 WSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
            +D  + ++   + + +LHS+       +R L  NN+L+    + KL+D+G++
Sbjct: 101 PADIKSYMLMTLRGLEYLHSN----WILHRDLKPNNLLIASDGVLKLADFGLA 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 51.3 bits (124), Expect = 6e-07
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 43/165 (26%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK-------VR-LDFLSKLQHPHLV 499
           GEG+ G +YK R  + G  VA      LKK  + N +       +R +  L +L+HP++V
Sbjct: 8   GEGTYGVVYKARDKKTGEIVA------LKKIRLDNEEEGIPSTALREISLLKELKHPNIV 61

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCPENVLKWSDRLAILIGVA 557
            LL               K++LV+EY       Y          N++K     +I+  + 
Sbjct: 62  KLLDVIHTE--------RKLYLVFEYCDMDLKKYLDKRPGPLSPNLIK-----SIMYQLL 108

Query: 558 KAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYGIS 597
           + + + H        S+R     L   NIL++   + KL+D+G++
Sbjct: 109 RGLAYCH--------SHRILHRDLKPQNILINRDGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 54/295 (18%)

Query: 448 MGEGSRGKLYKG-RLENGTYVAIRSLTFLKKYSIQN-----------LKVRLDFLSKLQH 495
           +G+G+ G++Y    +  G  +A++ +  L                  L+  ++ L  L H
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVE-LPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAIL 553
            ++V  LG   E+  +  S    +FL  EY+P GS  + L       E ++++     +L
Sbjct: 68  LNIVQYLGF--ETTEEYLS----IFL--EYVPGGSIGSCLRTYGRFEEQLVRFFTE-QVL 118

Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI----IMEEHEKLEAK 609
            G+A    +LHS    G     L  +N+L+D   I K+SD+GIS     I +  + +  +
Sbjct: 119 EGLA----YLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQ 171

Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL 669
           G           +   + E  VI    Q    + D+++ G ++LE   G       EA  
Sbjct: 172 GS----------VFWMAPE--VIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAI- 218

Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
              M   G++      + P V    S  +L  +    N C    P +RP+  ++L
Sbjct: 219 -AAMFKLGNKR-SAPPIPPDVSMNLSPVALDFL----NACFTINPDNRPTARELL 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 37/175 (21%)

Query: 441 NFDSLSFMGEGSRGKLYK-GRLENGTYVAIRSLTFLKKYSIQNL--KVRLD------FLS 491
           +F  L  +G+GS G +YK  RL +  + A      LK+  + ++  K R D       L+
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYA------LKEVDLGSMSQKEREDAVNEIRILA 54

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLK 545
            + HP+++S     ++         NK+ +V EY P G      S R    +  PE  + 
Sbjct: 55  SVNHPNIISYKEAFLDG--------NKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEI- 105

Query: 546 WSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           W     I I + + +  LH   I       L + NILL  + + K+ D GIS ++
Sbjct: 106 WR----IFIQLLRGLQALHEQKI---LHRDLKSANILLVANDLVKIGDLGISKVL 153

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 64/250 (25%), Positives = 104/250 (41%), Gaps = 51/250 (20%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK-------VR-LDFLS 491
            F+ L+ +GEG+ G +Y+ R   +G  VA      LKK  + N +       +R +  L 
Sbjct: 8   EFEKLNRIGEGTYGIVYRARDTTSGEIVA------LKKVRMDNERDGIPISSLREITLLL 61

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
            L+HP++V L    +  G   DS    +FLV EY       A L +N P      S    
Sbjct: 62  NLRHPNIVELKE--VVVGKHLDS----IFLVMEYCEQD--LASLLDNMP-TPFSESQVKC 112

Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
           +++ + + + +LH + I       L  +N+LL +    K++D+G++          AK  
Sbjct: 113 LMLQLLRGLQYLHENFI---IHRDLKVSNLLLTDKGCLKIADFGLARTYGLP----AKPM 165

Query: 612 GPKAR---Y---GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGK 664
            PK     Y     L  C T    +             D++  G IL E L   P++ GK
Sbjct: 166 TPKVVTLWYRAPELLLGCTTYTTAI-------------DMWAVGCILAELLAHKPLLPGK 212

Query: 665 GEAFLLNEMA 674
            E   L+ + 
Sbjct: 213 SEIEQLDLII 222

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 31/171 (18%)

Query: 441 NFDSLSFMGEGSRGK--LYKGRLENGTYVAIR-----SLTFLKKYSIQNLKVRLDFLSKL 493
           ++  +  +G+G+ G+  LY+ R E+ + V  +      L+  ++    N    +  LS L
Sbjct: 1   HYIPIRVLGKGAFGEATLYR-RTEDDSLVVWKEVNLTRLSEKERRDALN---EIVILSLL 56

Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC----PENVLKWSDR 549
           QHP++++   H ++  +        + +  EY   G+    +         E ++ W   
Sbjct: 57  QHPNIIAYYNHFMDDNT--------LLIEMEYANGGTLYDKIVRQKGQLFEEEMVLW--- 105

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
              L  +  AV ++H + I       + T NI L +  + KL D+GIS I+
Sbjct: 106 --YLFQIVSAVSYIHKAGI---LHRDIKTLNIFLTKAGLIKLGDFGISKIL 151

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 235 GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
            L ++ LS N  +      F  L  L+ LDLS N+L+ I P     LP++  L L+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 29/163 (17%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS--IQNLKVR-LDFLSKLQHPH 497
           +  L  +GEG+ G +YK R    G  VAI+ +  L+  S  I    +R +  L +L HP+
Sbjct: 1   YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIK-LRFESEGIPKTALREIKLLKELNHPN 59

Query: 498 LVSLL---GHCIESGSQDDSNTNKVFLVYEYIPNGSYRA--HLSENCPENVLKWSDRLAI 552
           ++ LL    H              ++LV+E++    Y+         PE+++K     + 
Sbjct: 60  IIKLLDVFRH-----------KGDLYLVFEFMDTDLYKLIKDRQRGLPESLIK-----SY 103

Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
           L  + + + F HS    G     L   N+L++   + KL+D+G
Sbjct: 104 LYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFG 143

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 28/158 (17%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRS--------LTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +G+G+ G +Y G    G  +A++         L   K+Y  + L+  +D L  L+H ++V
Sbjct: 8   LGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEY--EKLQEEVDLLKSLKHVNIV 65

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLAILIGVA 557
             LG C+      D NT  +F+  E++P GS  + L+     PE V     +  IL GVA
Sbjct: 66  QYLGTCL------DDNTISIFM--EFVPGGSISSILNRFGPLPEPVFCKYTK-QILDGVA 116

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
               +LH++ +       +  NN++L  + I KL D+G
Sbjct: 117 ----YLHNNCV---VHRDIKGNNVMLMPNGIIKLIDFG 147

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 73/301 (24%), Positives = 129/301 (42%), Gaps = 59/301 (19%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-QHPHLVSLL 502
           +GEG+ G++ K R++        ++  +K+Y+ ++        L+ L KL  HP++++LL
Sbjct: 15  IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL 74

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPE--------NVLKWSDR 549
           G C   G         ++L  EY P+G+      ++ + E  P         + L     
Sbjct: 75  GACEHRGY--------LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 126

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
           L     VA+ + +L        F +R L   NIL+ E+ +AK++D+G+S   E +     
Sbjct: 127 LHFAADVARGMDYLSQK----QFIHRDLAARNILVGENYVAKIADFGLSRGQEVY----- 177

Query: 609 KGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVGPIVTGKGE 666
                K   G L +   + E++   V    +    DV+++G +L E  SL G    G   
Sbjct: 178 ----VKKTMGRLPVRWMAIESLNYSVYTTNS----DVWSYGVLLWEIVSLGGTPYCGMTC 229

Query: 667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN 726
           A L  ++          R+  P+    C  E    V  +  +C   +P  RPSF  +L +
Sbjct: 230 AELYEKLPQ------GYRLEKPL---NCDDE----VYDLMRQCWREKPYERPSFAQILVS 276

Query: 727 L 727
           L
Sbjct: 277 L 277

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 71/308 (23%), Positives = 127/308 (41%), Gaps = 59/308 (19%)

Query: 441 NFDSLSFM---GEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSI-QNLKVRLDFL 490
           N  ++ FM   GE   GK+YKG L      E    VAI++L    +  + +  K      
Sbjct: 3   NLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMR 62

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP---------- 540
           S+LQHP++V LLG  + +  Q  S      +++ Y  +      L    P          
Sbjct: 63  SRLQHPNIVCLLG--VVTKEQPLS------MIFSYCSHSDLHEFLVMRSPHSDVGSTDDD 114

Query: 541 ---ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI- 596
              ++ L+ +D + I+  +A  + FL S  +       L T N+L+ +    K+SD G+ 
Sbjct: 115 KTVKSTLEPADFVHIVTQIAAGMEFLSSHHV---VHKDLATRNVLVFDKLNVKISDLGLF 171

Query: 597 -SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES 655
             +   ++ KL      P        I   S E ++      +  ++ D++++G +L E 
Sbjct: 172 REVYAADYYKLMGNSLLP--------IRWMSPEAIM----YGKFSIDSDIWSYGVVLWEV 219

Query: 656 LVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
                      ++ L     + +QD    I +  VL  C  +  + V ++  +C    PS
Sbjct: 220 F----------SYGLQPYCGYSNQDVIEMIRNRQVL-PCPDDCPAWVYTLMLECWNEFPS 268

Query: 716 SRPSFEDV 723
            RP F+D+
Sbjct: 269 RRPRFKDI 276

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 30/166 (18%)

Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++ +GRL+       +VAI++L     Y+ +    R DFLS      +  HP+
Sbjct: 12  IGAGEFGEVCRGRLKLPGKREIFVAIKTLK--SGYTEKQ---RRDFLSEASIMGQFDHPN 66

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          + +  V ++ E++ NG+  + L +N  +        + +L G+A
Sbjct: 67  IIHLEGVV--------TKSRPVMIITEFMENGALDSFLRQN--DGQFTVIQLVGMLRGIA 116

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEE 602
             + +L       ++ +R L   NIL++ + + K+SD+G+S  +E+
Sbjct: 117 AGMKYLSEM----NYVHRDLAARNILVNSNLVCKVSDFGLSRFLED 158

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 22/172 (12%)

Query: 441 NFDSLSFMGEGSRGKLYKGRLENGTYVAI------RSLTFLKKYSIQNLKVRLDFLSKLQ 494
            ++ +  +G G+ G ++  R +    + I        +T  ++ + QN + ++  L  L 
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQN-ECQV--LKLLS 57

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           HP+++    + +E           + +V EY P G+   ++ + C   +L     L   +
Sbjct: 58  HPNIIEYYENFLED--------KALMIVMEYAPGGTLAEYIQKRCNS-LLDEDTILHFFV 108

Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGISIIMEEHEK 605
            +  A+H +H+ +I       L T NILLD+H+ + K+ D+GIS I+    K
Sbjct: 109 QILLALHHVHTKLI---LHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK 157

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 61/184 (33%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLT------FLKKYSIQNLKVRLDFLSKLQ 494
           ++ LS +GEGS G ++K R  E G  VAI+          +KK +++ +++    L +L+
Sbjct: 3   YEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRM----LKQLK 58

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVF-------LVYEYI-----------PNGSYRAHLS 536
           HP+LV+L+               +VF       LV+EY            P G       
Sbjct: 59  HPNLVNLI---------------EVFRRKRKLHLVFEYCDHTVLNELEKNPRG------- 96

Query: 537 ENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
              PE+++K      I+    +AV+F H           +   NIL+ +    KL D+G 
Sbjct: 97  --VPEHLIK-----KIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGF 146

Query: 597 SIIM 600
           + I+
Sbjct: 147 ARIL 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 68/306 (22%), Positives = 130/306 (42%), Gaps = 57/306 (18%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRL----EN-GTYVAIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG      E     VAI+ L   +  S +  K  
Sbjct: 1   LRILKET--EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 56

Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN----C 539
           LD    ++ + +PH+  LLG C+ S  Q         L+ + +P G    ++ E+     
Sbjct: 57  LDEAYVMASVDNPHVCRLLGICLTSTVQ---------LITQLMPFGCLLDYVREHKDNIG 107

Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W  ++A  +   +    +H           L   N+L+   +  K++D+G++ +
Sbjct: 108 SQYLLNWCVQIAKGMNYLEERRLVHRD---------LAARNVLVKTPQHVKITDFGLAKL 158

Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL-EDDVYNFGFILLESLVG 658
           +   EK E   EG K    ++     + E++     + R    + DV+++G  + E +  
Sbjct: 159 LGADEK-EYHAEGGKVPIKWM-----ALESI-----LHRIYTHQSDVWSYGVTVWELMT- 206

Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
              +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP
Sbjct: 207 -FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRP 256

Query: 719 SFEDVL 724
            F +++
Sbjct: 257 KFRELI 262

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 15/152 (9%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKY--SIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G G+   +Y    L N   VAI+ +  L+K   S+  L+  +  +S+  HP++V    + 
Sbjct: 10  GVGATAVVYAAICLPNNEKVAIKRID-LEKCQTSVDELRKEVQAMSQCNHPNVVKY--YT 66

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS 565
             S    D     ++LV  Y+  GS    +  + P   L  +    +L  V K + +LHS
Sbjct: 67  --SFVVGDE----LWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS 120

Query: 566 SVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           +   G     +   NILL E    K++D+G+S
Sbjct: 121 N---GQIHRDIKAGNILLGEDGSVKIADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 21/139 (15%)

Query: 464 GTYVAIRSLT---FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF 520
           G   AI+ +     ++K  +  +    D LS+ Q P++V L         Q   N   ++
Sbjct: 18  GDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLY-----YSFQGKKN---LY 69

Query: 521 LVYEYIPNGSYRAHL-SENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTT 578
           LV EY+P G   + L +     E+V +       +  +  A+ +LHS   +G     L  
Sbjct: 70  LVMEYLPGGDLASLLENVGSLDEDVAR-----IYIAEIVLALEYLHS---NGIIHRDLKP 121

Query: 579 NNILLDEHRIAKLSDYGIS 597
           +NIL+D +   KL+D+G+S
Sbjct: 122 DNILIDSNGHLKLTDFGLS 140

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 24/157 (15%)

Query: 448 MGEGSRGKLYKG--RLENGTYVAIRSLTFLKKYSIQNLKVRL----DFLSKLQHPHLVSL 501
           +G G+ G + KG   +++G  V + ++  LK+  I   K         +++L HP +V L
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEV-AVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRL 61

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           +G C             + LV E  P G    +L +     V   SD   +   VA  + 
Sbjct: 62  IGVCKGEP---------LMLVMELAPLGPLLKYLKKRREIPV---SDLKELAHQVAMGMA 109

Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           +L S      F +R L   N+LL     AK+SD+G+S
Sbjct: 110 YLESK----HFVHRDLAARNVLLVNRHQAKISDFGMS 142

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 39/181 (21%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRL-----DFLSKL 493
           ++F     +GEGS   +   +  E     AI+ L   K+  I+  KV+      + L++L
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKIL--DKRQLIKEKKVKYVKIEKEVLTRL 58

Query: 494 -QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS------YRAHLSENCPENVLKW 546
             HP ++ L         QD+ N   ++ V EY PNG           L E C       
Sbjct: 59  NGHPGIIKLYYT-----FQDEEN---LYFVLEYAPNGELLQYIRKYGSLDEKCTRFYA-- 108

Query: 547 SDRLAILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
                IL+ +     +LHS  +I     +R L   NILLD+    K++D+G + +++ + 
Sbjct: 109 ---AEILLALE----YLHSKGII-----HRDLKPENILLDKDMHIKITDFGTAKVLDPNS 156

Query: 605 K 605
            
Sbjct: 157 S 157

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 42/277 (15%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++ G     T VAI+SL      S +      + + +LQHP LV L  + + 
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLK-QGSMSPEAFLAEANLMKQLQHPRLVRL--YAVV 70

Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHL--SENCPENVLKWSDRLAILIGVAKAVHFLHS 565
           +          ++++ EY+ NGS    L   E     + K  D  A    +A+ + F+  
Sbjct: 71  T-------QEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAA---QIAEGMAFIER 120

Query: 566 SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRT 625
                     L   NIL+ E    K++D+G++ ++E++E          AR G  F  + 
Sbjct: 121 K---NYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYT--------AREGAKFPIKW 169

Query: 626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT-GKGEAFLLNEMASFGSQDGRRR 684
           +A      ++     ++ DV++FG +L E     IVT G+     +       + +   R
Sbjct: 170 TAPE---AINYGTFTIKSDVWSFGILLTE-----IVTYGRIPYPGMTNPEVIQNLERGYR 221

Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
           +  P     C +E   ++      C   +P  RP+FE
Sbjct: 222 MPRP---DNCPEELYELMR----LCWKEKPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)

Query: 449 GEGSRGKLY--KGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLG 503
           G+GS GK+   + +     Y A++ L     +K+  +++     + LS++ HP +V L  
Sbjct: 2   GKGSFGKVLLVRKKDTGKLY-AMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKL-- 58

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-ENC-PENVLKWSDRLAILIGVAKAVH 561
           H      Q +    K++LV EY P G   +HLS E    E   ++         +  A+ 
Sbjct: 59  HY---AFQTEE---KLYLVLEYAPGGELFSHLSKEGRFSEERARF-----YAAEIVLALE 107

Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           +LHS  I      R L   NILLD     KL+D+G++
Sbjct: 108 YLHSLGII----YRDLKPENILLDADGHIKLTDFGLA 140

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 25/169 (14%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQHPH 497
           ++ + +  +G+GS G +YK R    G   A++ +        +   +R L  L   + P+
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPY 60

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL--SENCPENVLKWSDRLAILIG 555
           +V   G   + G         + +V EY+  GS    L      PE VL       I   
Sbjct: 61  VVKCYGAFYKEGE--------ISIVLEYMDGGSLADLLKKVGKIPEPVLA-----YIARQ 107

Query: 556 VAKAVHFLHSS--VISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIME 601
           + K + +LH+   +I     +R +  +N+L++     K++D+GIS ++E
Sbjct: 108 ILKGLDYLHTKRHII-----HRDIKPSNLLINSKGEVKIADFGISKVLE 151

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 48.5 bits (115), Expect = 7e-06
 Identities = 68/299 (22%), Positives = 119/299 (39%), Gaps = 63/299 (21%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-QHPHLVSLL 502
           +GEG+ G++ +  ++        ++  LK+++ +N        L+ L KL  HP++++LL
Sbjct: 10  IGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLL 69

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSY-------------RAHLSENCPENVLKWSDR 549
           G C         N   +++  EY P G+               A   E+   + L     
Sbjct: 70  GAC--------ENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQL 121

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
           L     VA  + +L        F +R L   N+L+ E+  +K++D+G+S           
Sbjct: 122 LQFASDVATGMQYLSEK----QFIHRDLAARNVLVGENLASKIADFGLS----------- 166

Query: 609 KGEG--PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVGPIVTGK 664
           +GE    K   G L +   + E++   V   ++    DV++FG +L E  SL G    G 
Sbjct: 167 RGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKS----DVWSFGVLLWEIVSLGGTPYCGM 222

Query: 665 GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             A L  ++          R+  P     C  E    V  +  +C    P  RP F  +
Sbjct: 223 TCAELYEKLPQ------GYRMEKP---RNCDDE----VYELMRQCWRDRPYERPPFAQI 268

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%)

Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLT---FLKKYSIQNLKVRLDFLSKLQHPHLVSLLG 503
           +G GS G++   + +  G Y AI+ L     LK   +Q++      L +L HP +V+++ 
Sbjct: 26  LGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMM- 84

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLAILIGVAKAVH 561
                  QD+   N+V+ + E++  G    HL +    P +V K+     +L     A  
Sbjct: 85  ----CSFQDE---NRVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVL-----AFE 132

Query: 562 FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
           +LHS  I       L   N+LLD     K++D+G
Sbjct: 133 YLHSKDI---IYRDLKPENLLLDNKGHVKVTDFG 163

Length = 329

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 49/292 (16%)

Query: 441 NFDSLSFM---GEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQ 494
           N   L+FM   G G  G ++ G+      VAI+++      ++  I+  KV    + KL 
Sbjct: 2   NPSELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKV----MMKLS 57

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           HP LV L G C +           +++V E++ NG    +L +   +  L     L++  
Sbjct: 58  HPKLVQLYGVCTQQ--------KPLYIVTEFMENGCLLNYLRQR--QGKLSKDMLLSMCQ 107

Query: 555 GVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
            V + + +L  +    SF +R L   N L+    + K+SD+G++  + + E   + G   
Sbjct: 108 DVCEGMEYLERN----SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAK- 162

Query: 614 KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE 672
                  F  + S      V +  +   + DV++FG ++ E    G +   K   + + E
Sbjct: 163 -------FPVKWSPPE---VFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVE 212

Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
           M S G      R+  P       + +   V  +   C   +P  RP+F ++L
Sbjct: 213 MISRGF-----RLYRP-------KLASMTVYEVMYSCWHEKPEGRPTFAELL 252

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 47.9 bits (115), Expect = 9e-06
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 53/176 (30%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK----------VRLDFL 490
           ++ ++ +GEG+ G++YK R  + G  VA      LKK  ++N K          ++L  L
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGELVA------LKKIRMENEKEGFPITAIREIKL--L 52

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIP---NG---SYRAHLSENCPENVL 544
            KL+HP++V L       G         +++V+EY+     G   S     +E+  +  +
Sbjct: 53  QKLRHPNIVRLKEIVTSKG------KGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYM 106

Query: 545 KWSDRLAILIGVAKAVHFLHSSV-----ISGSFSNRLTTNNILLDEHRIAKLSDYG 595
           K      +L G    + +LHS+      I GS        NIL++   + KL+D+G
Sbjct: 107 K-----QLLEG----LQYLHSNGILHRDIKGS--------NILINNDGVLKLADFG 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 34/212 (16%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++ G   N T VA+++L      S+Q      + +  LQH  LV L      
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVV-- 70

Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL-----KWSDRLAILIGVAKAVHF 562
                 +    ++++ EY+  GS    L  +    VL      +S ++A  +   +  ++
Sbjct: 71  ------TKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNY 124

Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
           +H           L   N+L+ E  + K++D+G++ ++E++E          AR G  F 
Sbjct: 125 IHRD---------LRAANVLVSESLMCKIADFGLARVIEDNEY--------TAREGAKFP 167

Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
            + +A      ++     ++ DV++FG +L E
Sbjct: 168 IKWTAPE---AINFGSFTIKSDVWSFGILLYE 196

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 23/173 (13%)

Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL 493
           L + T  F+ +  +GEG+ GK+YK R  + G  VAI+ +  + +   + +K   + L K 
Sbjct: 1   LPDPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIK-IMDIIEDEEEEIKEEYNILRKY 59

Query: 494 -QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA- 551
             HP++ +  G  I+       N ++++LV E    GS       +  + + K   RL  
Sbjct: 60  SNHPNIATFYGAFIKKNPP--GNDDQLWLVMELCGGGS-----VTDLVKGLRKKGKRLKE 112

Query: 552 -----ILIGVAKAVHFLHSS-VISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
                IL    + + +LH + VI     +R +   NILL ++   KL D+G+S
Sbjct: 113 EWIAYILRETLRGLAYLHENKVI-----HRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 53/262 (20%), Positives = 92/262 (35%), Gaps = 39/262 (14%)

Query: 110 LPDKIHRLSSLELLDMSSNFL------FGAIPSGISRLVRLQTLT-MDTNFFDDNVPDWW 162
           L   +    SL+ L +S N          ++  G+++   LQ L   D     D      
Sbjct: 43  LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102

Query: 163 DSLSN--LTVLSLKSNQLKGQFPSSICRIAT-----LTDIAMSNNELSGKLPD-----MS 210
             L +  L  L L +N L  +    + +        L  + +  N L G   +     + 
Sbjct: 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162

Query: 211 ALTSLHVLDLRENKL-DSGLPL------MPKGLVTVLLSRNLF----SGAIPQQFGELAQ 259
           A   L  L+L  N + D+G+            L  + L+ N      + A+ +    L  
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222

Query: 260 LQHLDLSFNDLSGIPPSVL---FSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDK-- 314
           L+ L+L  N+L+    + L      PNIS L L+   LS     D       + +++K  
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLS---LSCNDITDDGAKDLAEVLAEKES 279

Query: 315 -RVVKFGGNCLSYDTPSQHKEA 335
              +   GN    +      E+
Sbjct: 280 LLELDLRGNKFGEEGAQLLAES 301

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 34/175 (19%)

Query: 446 SFMGEGSRGKLYKG-RLENGTYVAIRSLTF---------LKKYSIQNLKVRLDFLSKLQH 495
           + +G GS G +Y G    +G  +A++ +            K+  +  L   +  L +LQH
Sbjct: 6   ALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQH 65

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLAIL 553
            ++V  L      GS  D++   +FL  EY+P GS  A L+      E +++       +
Sbjct: 66  ENIVQYL------GSSLDADHLNIFL--EYVPGGSVAALLNNYGAFEETLVR-----NFV 112

Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
             + K +++LH+  I       +   NIL+D     K+SD+GIS      +KLEA
Sbjct: 113 RQILKGLNYLHNRGI---IHRDIKGANILVDNKGGIKISDFGIS------KKLEA 158

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 43/192 (22%)

Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLTFLKKYSIQNLKVR 486
           R     EL++       L  +G G  G ++KG  +  G  + I     +   +IQ+   R
Sbjct: 2   RILKETELRK-------LKLLGSGVFGTVHKGIWIPEGDSIKIP----VAIKTIQDRSGR 50

Query: 487 LDF---------LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE 537
             F         +  L H ++V LLG C  +  Q         LV +  P GS   H+ +
Sbjct: 51  QTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQ---------LVTQLSPLGSLLDHVRQ 101

Query: 538 N----CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD 593
           +     P+ +L W       + +AK +++L            L   NILL    I +++D
Sbjct: 102 HRDSLDPQRLLNWC------VQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIAD 152

Query: 594 YGISIIMEEHEK 605
           +G++ ++   +K
Sbjct: 153 FGVADLLYPDDK 164

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 14/151 (9%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G+G+ GK+YK +  E G + A + +    +  +++  V +D LS+ +HP++V L     
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYF 72

Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
                     NK++++ E+   G+  + + E   E  L       +   + +A++FLHS 
Sbjct: 73  --------YENKLWILIEFCDGGALDSIMLEL--ERGLTEPQIRYVCRQMLEALNFLHSH 122

Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            +       L   NILL      KL+D+G+S
Sbjct: 123 KV---IHRDLKAGNILLTLDGDVKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
            +++L  L+ ++L    I G +P  +  ++SLE+LD+S N   G+IP  + +L  L+ L 
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 149 MDTNFFDDNVP 159
           ++ N     VP
Sbjct: 497 LNGNSLSGRVP 507

Length = 623

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 45/221 (20%)

Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  GRL+        VAI++L     Y+    K R DFLS      +  HP+
Sbjct: 12  IGAGEFGEVCSGRLKLPGKREIPVAIKTLK--AGYT---EKQRRDFLSEASIMGQFDHPN 66

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G   +S          V +V EY+ NGS  A L ++  +        + +L G+A
Sbjct: 67  IIHLEGVVTKS--------KPVMIVTEYMENGSLDAFLRKH--DGQFTVIQLVGMLRGIA 116

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             + +L      G     L   NIL++ + + K+SD+G+S ++E+          P+A Y
Sbjct: 117 SGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD---------PEAAY 164

Query: 618 ----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
               G + I  T+ E     +  ++     DV+++G ++ E
Sbjct: 165 TTRGGKIPIRWTAPE----AIAYRKFTSASDVWSYGIVMWE 201

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 63/283 (22%), Positives = 119/283 (42%), Gaps = 54/283 (19%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL--------TFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +G G  G+++ G     T VA+++L        +FL++  I         + KL+H  LV
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQI---------MKKLRHDKLV 64

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L     E           +++V EY+  GS    L +     +     +L  L+ +A  
Sbjct: 65  QLYAVVSEE---------PIYIVTEYMSKGSLLDFLKDGEGRAL-----KLPNLVDMAAQ 110

Query: 560 VHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYG 618
           V    + +   ++ +R L + NIL+ +  + K++D+G++ ++E++E          AR G
Sbjct: 111 VAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEY--------TARQG 162

Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS 678
             F  + +A    +     R  ++ DV++FG +L E +    V   G   + N       
Sbjct: 163 AKFPIKWTAPEAAL---YGRFTIKSDVWSFGILLTELVTKGRVPYPG---MNNREVLEQV 216

Query: 679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
           + G R          C Q+    +  +  +C   +P  RP+FE
Sbjct: 217 ERGYR--------MPCPQDCPISLHELMLQCWKKDPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 40/175 (22%), Positives = 87/175 (49%), Gaps = 32/175 (18%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS------IQNLKVRLDFLSKLQHPHLVS 500
           +G G+    Y+ R ++ GT +A++ +T+++  S      ++ L+  +  +++L HPH++ 
Sbjct: 8   LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIR 67

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGVAK 558
           +LG      + +DS+ N +F+  E++  GS    LS+     E V+     +     + +
Sbjct: 68  MLG-----ATCEDSHFN-LFV--EWMAGGSVSHLLSKYGAFKEAVI-----INYTEQLLR 114

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEH-RIAKLSDYGISIIMEEHEKLEAKGEG 612
            + +LH + I       +   N+L+D   +  +++D+G +       +L AKG G
Sbjct: 115 GLSYLHENQI---IHRDVKGANLLIDSTGQRLRIADFGAAA------RLAAKGTG 160

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 45/242 (18%)

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
           KL H  LV L G C        +    +++V EY+ NG    +L E+      + S  L 
Sbjct: 55  KLSHEKLVQLYGVC--------TKQRPIYIVTEYMSNGCLLNYLREH--GKRFQPSQLLE 104

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
           +   V + + +L S      F +R L   N L+D+    K+SD+G+S  + + E   + G
Sbjct: 105 MCKDVCEGMAYLESK----QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVG 160

Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVGPIVTGKG--E 666
                     F  R S   V++         + DV+ FG ++ E  SL      GK   E
Sbjct: 161 SK--------FPVRWSPPEVLLYSKFSS---KSDVWAFGVLMWEVYSL------GKMPYE 203

Query: 667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN 726
            F  +E     SQ    R+  P         +   V +I   C   +   RP+F+ +L +
Sbjct: 204 RFNNSETVEKVSQG--LRLYRP-------HLASEKVYAIMYSCWHEKAEERPTFQQLLSS 254

Query: 727 LQ 728
           ++
Sbjct: 255 IE 256

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 34/169 (20%)

Query: 448 MGEGSRGKLYKGRL--ENGTY--VAIRSLTFLKKYSIQNLKVRLDFLSK------LQHPH 497
           +GEG  G + +G+L  ++G+   VA++++    K  I       +FLS+        HP+
Sbjct: 7   LGEGEFGSVMEGQLSQDDGSQLKVAVKTM----KLDIHTYSEIEEFLSEAACMKDFDHPN 62

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL--------SENCPENVLKWSDR 549
           ++ L+G C E  +       K  ++  ++ +G   + L         E  P   L     
Sbjct: 63  VMKLIGVCFE--ASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTL----- 115

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           L  ++ +A  + +L +     +F +R L   N +L E     ++D+G+S
Sbjct: 116 LKFMVDIALGMEYLSNR----NFIHRDLAARNCMLREDMTVCVADFGLS 160

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 33/168 (19%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS-IQNLKVR-LDFLSKLQHPHLVSLLGH 504
           +GEG+ G ++K +  E G  VA++ +   +    I N  +R +  L   QHP++V LL  
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR-------LAILIGVA 557
                           LV EY+P+      LSE     VL+  +R        + +  + 
Sbjct: 68  FPHGSG--------FVLVMEYMPSD-----LSE-----VLRDEERPLPEAQVKSYMRMLL 109

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
           K V ++H++ I     +R L   N+L+    + K++D+G++ +  E E
Sbjct: 110 KGVAYMHANGIM----HRDLKPANLLISADGVLKIADFGLARLFSEEE 153

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 38/223 (17%)

Query: 445 LSFMGEGSRGKLYKGRLENGTYVA-IRSLTFLKKYSIQNLKVR--------LDFLSKLQH 495
           L  +G+GS GK++  R   G     + ++  LKK +   LKVR         D L+++ H
Sbjct: 1   LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKAT---LKVRDRVRTKMERDILAEVNH 57

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           P +V L       G        K++L+ +++  G     LS+   E +    D    L  
Sbjct: 58  PFIVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDVKFYLAE 106

Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
           +A A+  LHS    G     L   NILLDE    KL+D+G+S    +HEK        KA
Sbjct: 107 LALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--------KA 155

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG 658
            Y F   C T       VV+ +      D ++FG ++ E L G
Sbjct: 156 -YSF---CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 194

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 33/167 (19%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK---YSIQNLKVRLDFLSKLQHP 496
            ++ L+ + EG+ G +Y+ R  + G  VA++ L   K+   + I +L+  ++ L KLQHP
Sbjct: 6   EYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLR-EINILLKLQHP 64

Query: 497 HLVSL----LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH----LSENCPENVLKWSD 548
           ++V++    +G          SN +K+++V EY+       H    L E   +  L+ S+
Sbjct: 65  NIVTVKEVVVG----------SNLDKIYMVMEYV------EHDLKSLMETMKQPFLQ-SE 107

Query: 549 RLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
              +++ +   V  LH + I       L T+N+LL+   I K+ D+G
Sbjct: 108 VKCLMLQLLSGVAHLHDNWI---LHRDLKTSNLLLNNRGILKICDFG 151

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 35/195 (17%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG----RLENGTY-VAIRSLTFLKKYSIQNLKVR 486
           L  LKE     + +  +G G+ G +YKG      E     VAI+ L   ++ S +  K  
Sbjct: 1   LRILKET--ELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVL--REETSPKANKEI 56

Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC---- 539
           LD    ++ + HPH+V LLG C+         +++V L+ + +P G    ++  +     
Sbjct: 57  LDEAYVMASVDHPHVVRLLGICL---------SSQVQLITQLMPLGCLLDYVRNHKDNIG 107

Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W  ++A  +   +    +H           L   N+L+   +  K++D+G++ +
Sbjct: 108 SQYLLNWCVQIAKGMSYLEEKRLVHRD---------LAARNVLVKTPQHVKITDFGLAKL 158

Query: 600 MEEHEKLEAKGEGPK 614
           ++  EK E   EG K
Sbjct: 159 LDVDEK-EYHAEGGK 172

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 37/174 (21%)

Query: 441 NFDSLSFMGEGSRGKLYKG-RLENG-TYVAIRSLTFLKKYSIQNLKVRLD--------FL 490
           +F+ L+ +G+GS G ++K  R  +   Y        +K+  +  +  R           L
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKADKRVYA-------MKQIDLSKMNRREREEAIDEARVL 53

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR----AHLSENCPENVLKW 546
           +KL   +++      ++ G        K+ +V EY  NG              PE+ + W
Sbjct: 54  AKLDSSYIIRYYESFLDKG--------KLNIVMEYAENGDLHKLLKMQRGRPLPEDQV-W 104

Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
              + IL+G+A     LHS  I       + + N+ LD +   K+ D G++ ++
Sbjct: 105 RFFIQILLGLA----HLHSKKI---LHRDIKSLNLFLDAYDNVKIGDLGVAKLL 151

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 22/166 (13%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQHPH 497
                LS +GEG+ G + K RL   G   A++++T      +Q   +R L+     + P+
Sbjct: 1   EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPY 60

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSEN--CPENVLKWSDRLA 551
           +V   G  +     D+S+++ + +  EY   GS    Y+          E VL       
Sbjct: 61  IVKYYGAFL-----DESSSS-IGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVL-----GK 109

Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           I   V K + +LHS  I       +  +NILL      KL D+G+S
Sbjct: 110 IAESVLKGLSYLHSRKI---IHRDIKPSNILLTRKGQVKLCDFGVS 152

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 35/165 (21%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHPHLVSL 501
           +G G  GK+  G    G   A   +  L+  +      +L FL +      L HP+++  
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASA--TPDEQLLFLQEVQPYRELNHPNVLQC 60

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSD-----RLA--ILI 554
           LG CIES            LV E+ P G  + +L  +    V + +      R+A  +  
Sbjct: 61  LGQCIES--------IPYLLVLEFCPLGDLKNYL-RSNRGMVAQMAQKDVLQRMACEVAS 111

Query: 555 GVA--KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           G+       F+HS          L   N  L      K+ DYG++
Sbjct: 112 GLLWLHQADFIHSD---------LALRNCQLTADLSVKIGDYGLA 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 45.2 bits (108), Expect = 7e-05
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 26/155 (16%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKY-SIQN-LKVR-LDFLSKLQ-HPHLVSLLG 503
           G+G+ G +Y  R  E G  VAI+ +   KK+ S +  + +R +  L KL  HP++V L  
Sbjct: 8   GDGTFGSVYLARNKETGELVAIKKMK--KKFYSWEECMNLREVKSLRKLNEHPNIVKLKE 65

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPN---GSYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
              E         ++++ V+EY+        +    +   E+V++     +I+  + + +
Sbjct: 66  VFRE--------NDELYFVFEYMEGNLYQLMKDRKGKPFSESVIR-----SIIYQILQGL 112

Query: 561 HFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
             +H     G F   L   N+L+    + K++D+G
Sbjct: 113 AHIHKH---GFFHRDLKPENLLVSGPEVVKIADFG 144

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 60/229 (26%)

Query: 448 MGEGSRGKLYKGRLENGTY---------VAIRSLTFLKKYSIQNLKVRLDFLS------K 492
           +GEG  G +Y+G      Y         VA+++    K  +  +++ +  FL       +
Sbjct: 14  IGEGQFGDVYQG-----VYMSPENEKIAVAVKTC---KNCTSPSVREK--FLQEAYIMRQ 63

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
             HPH+V L+G   E         N V++V E  P G  R++L  N      K+S  LA 
Sbjct: 64  FDHPHIVKLIGVITE---------NPVWIVMELAPLGELRSYLQVN------KYSLDLAS 108

Query: 553 LI----GVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
           LI     ++ A+ +L S      F +R +   N+L+      KL D+G+S  +E+     
Sbjct: 109 LILYSYQLSTALAYLESK----RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYY- 163

Query: 608 AKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
                 KA  G L I   + E+    ++ +R     DV+ FG  + E L
Sbjct: 164 ------KASKGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEIL 202

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 27/177 (15%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFL 490
           L  L++    F+ +  +G G+ G++YKGR ++ G   AI+ +   +    + +K+ ++ L
Sbjct: 8   LSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEE-EEIKLEINML 66

Query: 491 SKL-QHPHLVSLLGHCIESG--SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
            K   H ++ +  G  I+      DD    +++LV E+   GS    L +N   N LK  
Sbjct: 67  KKYSHHRNIATYYGAFIKKSPPGHDD----QLWLVMEFCGAGSV-TDLVKNTKGNALK-E 120

Query: 548 DRLA-----ILIGVA--KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           D +A     IL G+A   A   +H  +            N+LL E+   KL D+G+S
Sbjct: 121 DWIAYICREILRGLAHLHAHKVIHRDI---------KGQNVLLTENAEVKLVDFGVS 168

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 68/318 (21%), Positives = 124/318 (38%), Gaps = 74/318 (23%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDF---- 489
           NN + +  +G+G+ G++++ R       E  T VA++    LK+ +  +  ++ DF    
Sbjct: 5   NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVK---MLKEEA--SADMQADFQREA 59

Query: 490 --LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV---- 543
             +++  HP++V LLG C             + L++EY+  G     L    P       
Sbjct: 60  ALMAEFDHPNIVKLLGVCAVG--------KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLS 111

Query: 544 ---------------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHR 587
                          L  +++L I   VA  + +L        F +R L T N L+ E+ 
Sbjct: 112 HSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER----KFVHRDLATRNCLVGENM 167

Query: 588 IAKLSDYGIS--IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDV 645
           + K++D+G+S  I   ++ K              + I     E++       R   E DV
Sbjct: 168 VVKIADFGLSRNIYSADYYKASEN--------DAIPIRWMPPESIF----YNRYTTESDV 215

Query: 646 YNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSI 705
           + +G +L E     +    G A   +E   +  +DG         + +C       + ++
Sbjct: 216 WAYGVVLWEIFSYGMQPYYGMA---HEEVIYYVRDGN--------VLSCPDNCPLELYNL 264

Query: 706 TNKCICPEPSSRPSFEDV 723
              C    PS RPSF  +
Sbjct: 265 MRLCWSKLPSDRPSFASI 282

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 25/163 (15%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL------TFLKKYSIQNLKVRLDFLSK 492
             +++L  +GEGS G + K +  E G  VAI+          +KK +++ ++     L +
Sbjct: 1   EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIR----MLKQ 56

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
           L+H +LV+L+               +++LV+E++ + +    L +    N L  S     
Sbjct: 57  LRHENLVNLIEVF--------RRKKRLYLVFEFVDH-TVLDDLEKYP--NGLDESRVRKY 105

Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
           L  + + + F HS  I       +   NIL+ +  + KL D+G
Sbjct: 106 LFQILRGIEFCHSHNI---IHRDIKPENILVSQSGVVKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 32/130 (24%)

Query: 486 RLDFL------SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-- 537
           R DFL      S+L++P+++ LLG C+     DD     + ++ EY+ NG     LS+  
Sbjct: 61  RNDFLKEIKIMSRLKNPNIIRLLGVCV----SDDP----LCMITEYMENGDLNQFLSQRE 112

Query: 538 ---------NCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHR 587
                    N P   +  ++ L + + +A  + +L S     +F +R L T N L+  H 
Sbjct: 113 IESTFTHANNIPS--VSIANLLYMAVQIASGMKYLASL----NFVHRDLATRNCLVGNHY 166

Query: 588 IAKLSDYGIS 597
             K++D+G+S
Sbjct: 167 TIKIADFGMS 176

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 24/166 (14%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK-----KYSIQNLKVRLDFLSKL 493
            N+     +G+G+ G++Y    ++ G  +A++ + F       K  +  L+  +  L  L
Sbjct: 2   TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL 61

Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLA 551
           QH  +V         G   D  T  +F+  EY+P GS +  L       E V +   R  
Sbjct: 62  QHERIVQYY------GCLRDDETLSIFM--EYMPGGSVKDQLKAYGALTETVTRKYTR-Q 112

Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           IL G    V +LHS++I       +   NIL D     KL D+G S
Sbjct: 113 ILEG----VEYLHSNMI---VHRDIKGANILRDSAGNVKLGDFGAS 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 18/163 (11%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSI---QNLKVRLDFLSKLQHPH 497
           F  L  +G GS G +Y  R +     VAI+ +++  K S    Q++   + FL +L+HP+
Sbjct: 17  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPN 76

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
            +   G  +          +  +LV EY   GS    L  +  +  L+  +  AI  G  
Sbjct: 77  TIEYKGCYLRE--------HTAWLVMEYCL-GSASDILEVH--KKPLQEVEIAAICHGAL 125

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           + + +LHS          +   NILL E    KL+D+G + ++
Sbjct: 126 QGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLV 165

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 38/177 (21%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL-----------TFLKKYSIQNLKVRL 487
           + ++ L  +GEG+ GK+YK R    G  VA++             T L++ S+      L
Sbjct: 1   DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISL------L 54

Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPE 541
             LS  +  ++V LL   +E   + +   + ++LV+EY+ +       S         P 
Sbjct: 55  QMLS--ESIYIVRLL--DVEHVEEKNGKPS-LYLVFEYLDSDLKKFMDSNGRGPGRPLPA 109

Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGIS 597
             +K S    +L GVA      H     G     L   N+L+D+ + + K++D G+ 
Sbjct: 110 KTIK-SFMYQLLKGVA----HCHK---HGVMHRDLKPQNLLVDKQKGLLKIADLGLG 158

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 19/159 (11%)

Query: 442 FDSLSFMGEGSRGKLYKGRLENGT--YVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHL 498
           F  L  +G+GS G+++KG ++N T   VAI+ +   + +  I++++  +  LS+   P++
Sbjct: 6   FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 64

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
               G  ++          K++++ EY+  GS    L E  P   L  +    IL  + K
Sbjct: 65  TKYYGSYLKD--------TKLWIIMEYLGGGS-ALDLLEPGP---LDETQIATILREILK 112

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            + +LHS          +   N+LL EH   KL+D+G++
Sbjct: 113 GLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 24/174 (13%)

Query: 442 FDSLSFMGEGSRGKLYK-GRLENGTYVAIRSLTF--LKKYSIQNLKVRLDFLSKLQHPHL 498
           ++ L  +G+GS G + K  R  +G  +  + + +  + +   Q L   ++ L +L+HP++
Sbjct: 2   YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNI 61

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-------PENVLKWSDRLA 551
           V      I     D SN   +++V EY   G   A L + C        E  + W     
Sbjct: 62  VRYYDRII-----DRSNQ-TLYIVMEYCEGGDL-AQLIQKCKKERKYIEEEFI-WR---- 109

Query: 552 ILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
           IL  +  A++  H+ S    +  +R L   NI LD +   KL D+G++ I+   
Sbjct: 110 ILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHD 163

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 162 WDSLSNLTVLSLKSNQLKGQFPSSICR-IATLTDIAMSNNELSGKLPDMSALTSLHVLDL 220
              L+NLT L L +N +    P  I    + L ++ +S+N++      +  L +L  LDL
Sbjct: 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL 170

Query: 221 RENKLDSGLPLM--PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVL 278
             N L     L+     L  + LS N  S  +P +   L+ L+ LDLS N +  +  S L
Sbjct: 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIEL-LSSL 228

Query: 279 FSLPNISYLHLASN 292
            +L N+S L L++N
Sbjct: 229 SNLKNLSGLELSNN 242

Length = 394

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 43/191 (22%)

Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK-------VR- 486
           K   + FD +  +GEG+ G++YK R  + G  VA      LKK  + N K       +R 
Sbjct: 3   KRCVDKFDIIGQIGEGTYGQVYKARDKDTGELVA------LKKVRLDNEKEGFPITAIRE 56

Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK----VFLVYEYIPNG------SYRAHLS 536
           +  L +L H ++V+L    I +  QD  +  K     +LV+EY+ +       S   H S
Sbjct: 57  IKILRQLNHRNIVNL--KEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFS 114

Query: 537 ENCPENVLKWSDRLAILIGVA--KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
           E+  ++ +K      +L G+      +FLH  +           +NILL+     KL+D+
Sbjct: 115 EDHIKSFMK-----QLLEGLNYCHKKNFLHRDI---------KCSNILLNNKGQIKLADF 160

Query: 595 GISIIMEEHEK 605
           G++ +    E 
Sbjct: 161 GLARLYNSEES 171

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 38/205 (18%)

Query: 438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK----------VR 486
              +++ L  +GEG+ G++YK R ++ G  VA      LKK  + N K          ++
Sbjct: 6   KLRDYEILGKLGEGTFGEVYKARQIKTGRVVA------LKKILMHNEKDGFPITALREIK 59

Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN------GSYRAHLSENCP 540
           +  L KL+HP++V L+   +E   +       V++V  Y+ +       +    L+E+  
Sbjct: 60  I--LKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQI 117

Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS-II 599
           +  +       +L G+     +LH + I       +   NIL+D   I K++D+G++   
Sbjct: 118 KCYML-----QLLEGIN----YLHENHI---LHRDIKAANILIDNQGILKIADFGLARPY 165

Query: 600 MEEHEKLEAKGEGPKARYGFLFICR 624
                  +  G G   +Y  L + R
Sbjct: 166 DGPPPNPKGGGGGGTRKYTNLVVTR 190

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 35/195 (17%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRL--ENGTY---VAIRSL--TFLKKYSIQNLK 484
           L  LKE       +  +G G+ G +YKG    E  T    VAI+ L  T   K +++ + 
Sbjct: 1   LRILKET--ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD 58

Query: 485 VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV- 543
             L  ++ + HPHLV LLG C+    Q         LV + +P+G    ++ E+  +N+ 
Sbjct: 59  EAL-IMASMDHPHLVRLLGVCLSPTIQ---------LVTQLMPHGCLLDYVHEH-KDNIG 107

Query: 544 ----LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
               L W       + +AK + +L    +       L   N+L+      K++D+G++ +
Sbjct: 108 SQLLLNWC------VQIAKGMMYLEERRL---VHRDLAARNVLVKSPNHVKITDFGLARL 158

Query: 600 MEEHEKLEAKGEGPK 614
           +E  EK E   +G K
Sbjct: 159 LEGDEK-EYNADGGK 172

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 46/175 (26%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD----------- 488
           NF  +  +GEG+ G +YK R    G  VA++             K+RLD           
Sbjct: 1   NFQKVEKIGEGTYGVVYKARNKLTGEVVALK-------------KIRLDTETEGVPSTAI 47

Query: 489 ----FLSKLQHPHLVSLLG--HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
                L +L HP++V LL   H            NK++LV+E++ +   +  + +  P +
Sbjct: 48  REISLLKELNHPNIVKLLDVIH----------TENKLYLVFEFL-HQDLKKFM-DASPLS 95

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            +      + L  + + + F HS  +       L   N+L++     KL+D+G++
Sbjct: 96  GIPLPLIKSYLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
            +F  L+ +G+G  G+++  + ++ G  VA++ +      K   ++++    D L+  + 
Sbjct: 1   KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKS 60

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
             LV LL        QDD     ++L  EY+P G +R  L+      VL        +  
Sbjct: 61  EWLVKLL-----YAFQDDEY---LYLAMEYVPGGDFRTLLNNL---GVLSEDHARFYMAE 109

Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           + +AV  LH     G     L   N L+D     KL+D+G+S
Sbjct: 110 MFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFGLS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 38/171 (22%)

Query: 448 MGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQNLKVR--------LDFLSKLQHPH 497
           +G+GS G+  L + R +   YV       +KK +++N   R           LS+L+HP+
Sbjct: 8   VGKGSYGEVSLVRHRTDGKQYV-------IKKLNLRNASRRERKAAEQEAQLLSQLKHPN 60

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN----CPEN-VLKWSDRLAI 552
           +V+      ES   +D     +++V  +   G     L E      PEN V++W      
Sbjct: 61  IVAYR----ESWEGEDG---LLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEW------ 107

Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH 603
            + +A A+ +LH   I       L T N+ L    I K+ D GI+ ++E  
Sbjct: 108 FVQIAMALQYLHEKHI---LHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ 155

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 47/183 (25%)

Query: 448 MGEGSRGKLYKGRLENGTY----VAIRSLTFLKKYSIQNLKVRLDFL------SKLQHPH 497
           +G+GS G + +G           VA++ L      S +   +  DFL        L H +
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLK-----SDKLSDIMDDFLKEAAIMHSLDHEN 57

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL---- 553
           L+ L G  +         T+ + +V E  P GS    L ++   + L     ++ L    
Sbjct: 58  LIRLYGVVL---------THPLMMVTELAPLGSLLDRLRKDALGHFL-----ISTLCDYA 103

Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS---------IIMEEH 603
           + +A  + +L S      F +R L   NILL      K+ D+G+           +MEEH
Sbjct: 104 VQIANGMRYLESK----RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEH 159

Query: 604 EKL 606
            K+
Sbjct: 160 LKV 162

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 481 QNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
           + L   L  +S L  H ++V+LLG C   G         + ++ EY   G     L    
Sbjct: 83  EALMSELKIMSHLGNHENIVNLLGACTIGGP--------ILVITEYCCYGDLLNFLRRK- 133

Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            E+ L   D L+    VAK + FL S          L   N+LL   +I K+ D+G++
Sbjct: 134 RESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGLA 188

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 19/159 (11%)

Query: 442 FDSLSFMGEGSRGKLYKGRLENGT--YVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHL 498
           F  L  +G+GS G++YKG ++N T   VAI+ +   + +  I++++  +  LS+   P++
Sbjct: 6   FTKLERIGKGSFGEVYKG-IDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYI 64

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
               G  ++          K++++ EY+  GS    L     E     +    IL  + K
Sbjct: 65  TRYYGSYLKG--------TKLWIIMEYLGGGSALDLLKPGPLEETYIAT----ILREILK 112

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            + +LHS          +   N+LL E    KL+D+G++
Sbjct: 113 GLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 14/151 (9%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G+G+ GK+YK +  E G   A + +    +  +++  V +D L+   HP++V LL    
Sbjct: 13  LGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 72

Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
                     N ++++ E+   G+  A + E   E  L       +     +A+++LH +
Sbjct: 73  YE--------NNLWILIEFCAGGAVDAVMLE--LERPLTEPQIRVVCKQTLEALNYLHEN 122

Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            I       L   NIL       KL+D+G+S
Sbjct: 123 KI---IHRDLKAGNILFTLDGDIKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 259 QLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
            L+ LDLS N L+ IP      LPN+  L L+ N L+   P+  S    L S+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Length = 60

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 18/162 (11%)

Query: 441 NFDSLSFMGEGSRGKLY--KGRLENGTYVAIR-SLTFLKKYSIQNLKVRLDFLSKLQHPH 497
            ++ +  +GEGS GK+Y  K + ++   V     LT +     +  K  +  L+K++HP+
Sbjct: 1   RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPN 60

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR-LAILIGV 556
           +V+      E+G        ++F+V EY   G     +  N    VL   D+ L+  + +
Sbjct: 61  IVTFFASFQENG--------RLFIVMEYCDGGDLMKRI--NRQRGVLFSEDQILSWFVQI 110

Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIAKLSDYGIS 597
           +  +  +H   I       + + NI L ++  +AKL D+GI+
Sbjct: 111 SLGLKHIHDRKI---LHRDIKSQNIFLSKNGMVAKLGDFGIA 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 19/160 (11%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +F+ +  +G G+ G +YK R +  G   AI+ +          ++  +  +   +H ++V
Sbjct: 10  DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIV 69

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA--HLSENCPENVLKWSDRLAILIGVA 557
           +  G  +          +K+++  E+   GS +   H++    E+ + +  R  +     
Sbjct: 70  AYFGSYLRR--------DKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETL----- 116

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           + +++LHS    G     +   NILL ++   KL+D+G+S
Sbjct: 117 QGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 20/174 (11%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTF------LKKYSIQNLKVRLDFLSKLQ 494
           ++ ++ +G G+ G +YK R   +G +VA++S+        L   +++ + + L  L    
Sbjct: 2   YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVAL-LKRLEAFD 60

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN--VLKWSDRLAI 552
           HP++V L+  C  + S+ D  T KV LV+E++ +   R +L +  P         D +  
Sbjct: 61  HPNIVRLMDVC--ATSRTDRET-KVTLVFEHV-DQDLRTYLDKVPPPGLPAETIKDLMRQ 116

Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
            +   + + FLH++ I       L   NIL+      KL+D+G++ I      L
Sbjct: 117 FL---RGLDFLHANCI---VHRDLKPENILVTSGGQVKLADFGLARIYSCQMAL 164

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 17/166 (10%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LEN-GTYVAIRSLTF------LKKYSIQNLKVRLDFLSKL 493
           ++ ++ +GEG+ GK++K R L+N G +VA++ +        +   +I+ + V L  L   
Sbjct: 3   YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV-LRHLETF 61

Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
           +HP++V L   C  + S+ D  T K+ LV+E++ +     +L +  PE  +       ++
Sbjct: 62  EHPNVVRLFDVC--TVSRTDRET-KLTLVFEHV-DQDLTTYL-DKVPEPGVPTETIKDMM 116

Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
             + + + FLHS  +       L   NIL+      KL+D+G++ I
Sbjct: 117 FQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARI 159

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 72/304 (23%), Positives = 126/304 (41%), Gaps = 63/304 (20%)

Query: 447 FMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-QHPHLVSL 501
            +GEG+ G++ K R++        ++  +K+Y+ ++        L+ L KL  HP++++L
Sbjct: 2   VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINL 61

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSY-------------RAHLSENCPENVLKWSD 548
           LG C         +   ++L  EY P+G+               A    N   + L    
Sbjct: 62  LGAC--------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 113

Query: 549 RLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
            L     VA+ + +L        F +R L   NIL+ E+ +AK++D+G+S          
Sbjct: 114 LLHFAADVARGMDYLSQK----QFIHRDLAARNILVGENYVAKIADFGLS---------- 159

Query: 608 AKGEG--PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVGPIVTG 663
            +G+    K   G L +   + E++   V    +    DV+++G +L E  SL G    G
Sbjct: 160 -RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNS----DVWSYGVLLWEIVSLGGTPYCG 214

Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
              A L  ++          R+  P     C  E    V  +  +C   +P  RPSF  +
Sbjct: 215 MTCAELYEKLPQ------GYRLEKP---LNCDDE----VYDLMRQCWREKPYERPSFAQI 261

Query: 724 LWNL 727
           L +L
Sbjct: 262 LVSL 265

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 18/163 (11%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPH 497
           F  L  +G GS G +Y  R + N   VAI+ +++  K S    Q++   + FL KL+HP+
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
            +   G  +          +  +LV EY   GS    L  +  +  L+  +  A+  G  
Sbjct: 77  TIQYRGCYLRE--------HTAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAVTHGAL 125

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           + + +LHS  +       +   NILL E  + KL D+G + IM
Sbjct: 126 QGLAYLHSHNM---IHRDVKAGNILLSEPGLVKLGDFGSASIM 165

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 26/166 (15%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQHPH 497
           ++ + L  +G G+ G + K      G  +A++++      +IQ   +R LD L K   P+
Sbjct: 1   DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPY 60

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC---PENVLKWSDRLAILI 554
           +V   G           N   + +  EY+  GS    L E     PE +L       I +
Sbjct: 61  IVGFYGAFY--------NNGDISICMEYMDGGSLDKILKEVQGRIPERILG-----KIAV 107

Query: 555 GVAKAVHFLHS--SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
            V K + +LH    +I     +R +  +NIL++     KL D+G+S
Sbjct: 108 AVLKGLTYLHEKHKII-----HRDVKPSNILVNSRGQIKLCDFGVS 148

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 25/130 (19%)

Query: 482 NLKVRLDFL------SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL 535
           N   R DFL      S+L+ P+++ LL  CI S        + + ++ EY+ NG     L
Sbjct: 59  NKNARNDFLKEIKIMSRLKDPNIIRLLAVCITS--------DPLCMITEYMENGDLNQFL 110

Query: 536 SENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG-------SFSNR-LTTNNILLDEHR 587
           S + P+   + +D + I         F+ + + SG       +F +R L T N L+ ++ 
Sbjct: 111 SRHEPQEAAEKADVVTISYSTLI---FMATQIASGMKYLSSLNFVHRDLATRNCLVGKNY 167

Query: 588 IAKLSDYGIS 597
             K++D+G+S
Sbjct: 168 TIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 20/174 (11%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYK-GRLENGTYVAIRSLTFLKKYSIQNLKVRLDFL 490
           LE L + T+ ++ +  +G+G+ GK+YK    ++G+  A++ L  +     + ++   + L
Sbjct: 14  LESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVD-EEIEAEYNIL 72

Query: 491 SKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
             L  HP++V   G   ++   D     +++LV E    GS    +     + +L    R
Sbjct: 73  QSLPNHPNVVKFYGMFYKA---DKLVGGQLWLVLELCNGGSVTELV-----KGLLICGQR 124

Query: 550 LA------ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           L       IL G    +  LH++ I       +  NNILL      KL D+G+S
Sbjct: 125 LDEAMISYILYGALLGLQHLHNNRI---IHRDVKGNNILLTTEGGVKLVDFGVS 175

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 58/292 (19%)

Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++++G L+        VAI++L     Y+    K R DFLS      +  H +
Sbjct: 13  IGAGEFGEVFRGILKMPGRKEVAVAIKTLK--PGYT---EKQRQDFLSEASIMGQFSHHN 67

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          +      ++ EY+ NG+   +L ++  E        + +L G+A
Sbjct: 68  IIRLEGVV--------TKFKPAMIITEYMENGALDKYLRDHDGE--FSSYQLVGMLRGIA 117

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             + +L       ++ +R L   NIL++ +   K+SD+G+S ++E+          P+  
Sbjct: 118 AGMKYLSDM----NYVHRDLAARNILVNSNLECKVSDFGLSRVLEDD---------PEGT 164

Query: 617 Y----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE 672
           Y    G + I  T+ E     +  ++     DV++FG ++ E      V   GE      
Sbjct: 165 YTTSGGKIPIRWTAPE----AIAYRKFTSASDVWSFGIVMWE------VMSFGE----RP 210

Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                + +  + I D   L     +  S V  +  +C   + + RP F D++
Sbjct: 211 YWDMSNHEVMKAINDGFRLPA-PMDCPSAVYQLMLQCWQQDRARRPRFVDIV 261

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)

Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL 493
           L++    F+ +  +G G+ G++YKGR ++ G   AI+ +        + +K  ++ L K 
Sbjct: 1   LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE-EEIKQEINMLKKY 59

Query: 494 -QHPHLVSLLGHCIESG--SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
             H ++ +  G  I+      DD    +++LV E+   GS    L +N   N LK     
Sbjct: 60  SHHRNIATYYGAFIKKNPPGMDD----QLWLVMEFCGAGSV-TDLIKNTKGNTLKEEWIA 114

Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            I   + + +  LH   +       +   N+LL E+   KL D+G+S
Sbjct: 115 YICREILRGLSHLHQHKV---IHRDIKGQNVLLTENAEVKLVDFGVS 158

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 27/159 (16%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQN-------LKVR-LDFLSKLQHPHL 498
           +GEG+ G +YKGR  + G  VA      +KK  +++         +R +  L +LQHP++
Sbjct: 8   IGEGTYGVVYKGRNKKTGQIVA------MKKIRLESEEEGVPSTAIREISLLKELQHPNI 61

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V L    ++         ++++L++E++ +   + +L        +      + L  + +
Sbjct: 62  VCLQDVLMQE--------SRLYLIFEFL-SMDLKKYLDSLPKGQYMDAELVKSYLYQILQ 112

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            + F HS  +       L   N+L+D   + KL+D+G++
Sbjct: 113 GILFCHSRRV---LHRDLKPQNLLIDNKGVIKLADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 36/164 (21%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHPHLVSL 501
           +G G  GK+    +   T VA   +  LK  +  + K + +FL +      LQHP+++  
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKANA--SSKEQNEFLQQGDPYRILQHPNILQC 60

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSD-----RLAILIGV 556
           LG C+E+            LV+EY   G  +++LS+   +   + S      R+A  I  
Sbjct: 61  LGQCVEA--------IPYLLVFEYCELGDLKSYLSQE--QWHRRNSQLLLLQRMACEIAA 110

Query: 557 AKAV----HFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
                   +FLHS          L   N  L      K+ DYGI
Sbjct: 111 GVTHMHKHNFLHSD---------LALRNCFLTSDLTVKVGDYGI 145

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 23/176 (13%)

Query: 433 EELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY--VAIRSL---TFLKKYSIQNLKVRL 487
            + K    +F+ +  +G GS G++     +N  +  VAI+       +K+  + ++    
Sbjct: 23  RKNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSER 82

Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLK 545
             L+ + HP  V+L G       +D+S    ++LV E++  G +   L  N   P +V  
Sbjct: 83  KILNYINHPFCVNLYG-----SFKDES---YLYLVLEFVIGGEFFTFLRRNKRFPNDVGC 134

Query: 546 WSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
           +     +LI       +L S  I       L   N+LLD+    K++D+G + +++
Sbjct: 135 FYAAQIVLI-----FEYLQSLNI---VYRDLKPENLLLDKDGFIKMTDFGFAKVVD 182

Length = 340

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 9e-04
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 10/155 (6%)

Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAM---SNNELSGKLPDMSALTSLHVLDL 220
           SLS L  L L S             +  L  +     + N L   + ++  LT+L  LDL
Sbjct: 65  SLSRLLSLDLLSPSGI-SSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123

Query: 221 REN---KLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSV 277
             N    +   + L+   L  + LS N    ++P     L  L++LDLSFNDLS +P   
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL- 181

Query: 278 LFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
           L +L N++ L L+ N +S  LP ++   S L+ + 
Sbjct: 182 LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD 215

Length = 394

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 66/301 (21%), Positives = 122/301 (40%), Gaps = 82/301 (27%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL-------TFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
           +GEG  G + +G    G  VA++++        FL++ ++         ++KL H +LV 
Sbjct: 14  IGEGEFGAVLQGEY-TGQKVAVKNIKCDVTAQAFLEETAV---------MTKLHHKNLVR 63

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSY------RAHLSENCPENVLKWSDRLAILI 554
           LLG  + +G         +++V E +  G+       R     +  + +L++S      +
Sbjct: 64  LLGVILHNG---------LYIVMELMSKGNLVNFLRTRGRALVSVIQ-LLQFS------L 107

Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME---EHEKLEAKGE 611
            VA+ + +L S  +       L   NIL+ E  +AK+SD+G++ +     ++ KL  K  
Sbjct: 108 DVAEGMEYLESKKL---VHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWT 164

Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA---- 667
            P+A     F  ++                  DV+++G +L E      V   G A    
Sbjct: 165 APEALKHKKFSSKS------------------DVWSYGVLLWE------VFSYGRAPYPK 200

Query: 668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
             L E+     +  R   ++P       +   + V  +   C   EP  RPSF  +   L
Sbjct: 201 MSLKEVKECVEKGYR---MEP------PEGCPADVYVLMTSCWETEPKKRPSFHKLREKL 251

Query: 728 Q 728
           +
Sbjct: 252 E 252

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 26/163 (15%)

Query: 441 NFDSLSFMGEGSRGKLYKGRLE-NGTYVA-----IRSLTFLKKYSIQNLKVRLDFLSKLQ 494
           + + +  +G G+ G+++  R   +  Y A     I  +  LK+   Q++      L ++ 
Sbjct: 2   DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQ--EQHVHNEKRVLKEVS 59

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           HP ++ L          D      ++++ EY+P G   ++L      N  ++S+   +  
Sbjct: 60  HPFIIRL-----FWTEHDQRF---LYMLMEYVPGGELFSYL-----RNSGRFSNSTGLFY 106

Query: 555 G--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
              +  A+ +LHS  I       L   NILLD+    KL+D+G
Sbjct: 107 ASEIVCALEYLHSKEIV---YRDLKPENILLDKEGHIKLTDFG 146

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 38/169 (22%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
           ++ +  +G G+ G +YK R +  G  VAI+ +        + ++  +  L + +HP++V+
Sbjct: 5   YELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVA 64

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGS----Y---RAHLSENCPENVLKWSDRLAIL 553
             G  +          +K+++V EY   GS    Y   R  LSE     V + +     L
Sbjct: 65  YFGSYLRR--------DKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRET-----L 111

Query: 554 IGVAKAVHFLHSSV-----ISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            G+A    +LH +      I G+        NILL E    KL+D+G+S
Sbjct: 112 KGLA----YLHETGKIHRDIKGA--------NILLTEDGDVKLADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 64/198 (32%)

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
           ++L HP++V+LL    +SG         +F V+EY+P  + R  L+    +  L   +  
Sbjct: 33  ARLYHPNIVALL----DSGEAPP---GLLFAVFEYVPGRTLREVLAA---DGALPAGETG 82

Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILL---DEHRIAKLSDYGISI--------- 598
            +++ V  A+   H+    G     L   NI++        AK+ D+GI           
Sbjct: 83  RLMLQVLDALACAHN---QGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDAD 139

Query: 599 ---IMEEHEKL---------EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
              +    E L         + +GE                                D+Y
Sbjct: 140 VATLTRTTEVLGTPTYCAPEQLRGEPVTP--------------------------NSDLY 173

Query: 647 NFGFILLESLVG-PIVTG 663
            +G I LE L G  +V G
Sbjct: 174 AWGLIFLECLTGQRVVQG 191

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 48/181 (26%)

Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLK-------------VR-L 487
           ++    +G G+ G++YK + +NG           K+Y+I+  K              R +
Sbjct: 2   YEIEGCIGRGTYGRVYKAKRKNGKDG--------KEYAIKKFKGDKEQYTGISQSACREI 53

Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEY-------IPNGSYRAHLSENCP 540
             L +L+H ++VSL+   +E           V+L+++Y       I    +R     + P
Sbjct: 54  ALLRELKHENVVSLVEVFLE------HADKSVYLLFDYAEHDLWQIIK-FHRQAKRVSIP 106

Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL----DEHRIAKLSDYGI 596
            +++K     ++L  +   VH+LHS+ +       L   NIL+     E  + K+ D G+
Sbjct: 107 PSMVK-----SLLWQILNGVHYLHSNWV---LHRDLKPANILVMGEGPERGVVKIGDLGL 158

Query: 597 S 597
           +
Sbjct: 159 A 159

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 38/170 (22%)

Query: 442 FDSLSFMGEGSRGKL----YKGRLENGTYVAIRSLTFLKK---------YSIQNLKVRLD 488
           F  L+ +G G  GK+    YK     G   AI++L   KK          S+   K   +
Sbjct: 1   FRCLAVLGRGHFGKVLLAEYKK---TGELYAIKAL---KKGDIIARDEVESLMCEKRIFE 54

Query: 489 FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSD 548
             +  +HP LV+L   C ++        + V  V EY   G    H+  +       +S+
Sbjct: 55  TANSERHPFLVNLFA-CFQT-------EDHVCFVMEYAAGGDLMMHIHTD------VFSE 100

Query: 549 RLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
             A+     V   + +LH + I       L  +N+LLD     K++D+G+
Sbjct: 101 PRAVFYAACVVLGLQYLHENKI---VYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 38/170 (22%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLD---------- 488
           ++F+ +  +G GS G++   R   +G Y A++    L K  I    V+L           
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALK---ILSKAKI----VKLKQVEHVLNEKR 53

Query: 489 FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL--SENCPENVLKW 546
            L  ++HP LV+L G       QDDSN   ++LV EY+P G   +HL  S   PE V ++
Sbjct: 54  ILQSIRHPFLVNLYGS-----FQDDSN---LYLVMEYVPGGELFSHLRKSGRFPEPVARF 105

Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYG 595
                +L     A+ +LHS  I      R L   N+LLD     K++D+G
Sbjct: 106 YAAQVVL-----ALEYLHSLDI----VYRDLKPENLLLDSDGYIKITDFG 146

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 38/141 (26%)

Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
           FLK+  I         LS+L+ P+++ LLG C++         + + ++ EY+ NG    
Sbjct: 66  FLKEVKI---------LSRLKDPNIIRLLGVCVDE--------DPLCMITEYMENGDLNQ 108

Query: 534 HLSENCPEN----------------VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-L 576
            LS +  ++                 + +S  L + + +A  + +L S     +F +R L
Sbjct: 109 FLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL----NFVHRDL 164

Query: 577 TTNNILLDEHRIAKLSDYGIS 597
            T N L+ E+   K++D+G+S
Sbjct: 165 ATRNCLVGENLTIKIADFGMS 185

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 63/256 (24%)

Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------ENC------P 540
           +H ++++LLG C + G         ++++ EY   G+ R +L        E C      P
Sbjct: 82  KHKNIINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVP 133

Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           E  L + D ++    VA+ + +L S          L   N+L+ E  + K++D+G++  +
Sbjct: 134 EEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDI 190

Query: 601 EE--------HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
                     + +L  K   P+A +  ++  ++                  DV++FG +L
Sbjct: 191 HHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLL 232

Query: 653 LESLVGPIVTGKGEAFLLNEMAS-FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
            E     I T  G  +    +   F       R+  P   + C+ E    +  +   C  
Sbjct: 233 WE-----IFTLGGSPYPGVPVEELFKLLKEGHRMDKP---SNCTNE----LYMMMRDCWH 280

Query: 712 PEPSSRPSFEDVLWNL 727
             PS RP+F+ ++ +L
Sbjct: 281 AVPSQRPTFKQLVEDL 296

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 19/159 (11%)

Query: 442 FDSLSFMGEGSRGKLYKGRLENGT--YVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHL 498
           F  L  +G+GS G+++KG ++N T   VAI+ +   + +  I++++  +  LS+   P++
Sbjct: 6   FTKLERIGKGSFGEVFKG-IDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 64

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
               G  ++          K++++ EY+  GS    L    P +  + +    +L  + K
Sbjct: 65  TKYYGSYLKG--------TKLWIIMEYLGGGSALDLLRAG-PFDEFQIA---TMLKEILK 112

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            + +LHS          +   N+LL E    KL+D+G++
Sbjct: 113 GLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 27/158 (17%)

Query: 448 MGEGSRGK-LYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSK-LQHPHLVSLL 502
           +G+GS GK L   R  +G++ A++ L   T LKK    ++    + L K L+HP LV L 
Sbjct: 3   IGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGL- 61

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-ENC---PENVLKWSDRLAILIGVAK 558
                          K++ V +Y+  G    HL  E C   P      ++       VA 
Sbjct: 62  -------HYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYAAE-------VAS 107

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
           A+ +LHS  I       L   NILLD      L+D+G+
Sbjct: 108 AIGYLHSLNI---IYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 214 SLHVLDLRENKL---DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDL 270
           +L  LDL  N+L     G       L  + LS N  +   P+ F  L  L+ LDLS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 63/316 (19%), Positives = 115/316 (36%), Gaps = 88/316 (27%)

Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLT----------FLKKYSIQNLKVRLDFLS 491
           +G+GS G +Y+G  +        T VAI+++           FL + S+         + 
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASV---------MK 64

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SY-RAHLSENCPENVLKWS 547
           +    H+V LLG          S      +V E +  G   SY R+   E      L   
Sbjct: 65  EFNCHHVVRLLGVV--------STGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPP 116

Query: 548 DRLAIL---IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
                +     +A  + +L +      F +R L   N ++ E    K+ D+G++  + E 
Sbjct: 117 TLQKFIQMAAEIADGMAYLAAK----KFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYET 172

Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTG 663
           +         K   G L +   + E++   V   ++    DV++FG +L           
Sbjct: 173 DYYR------KGGKGLLPVRWMAPESLKDGVFTTKS----DVWSFGVVLW---------- 212

Query: 664 KGEAFLLNEMASFGSQ--DGR------RRIVDPVVLT---TCSQESLSIVVSITNKCICP 712
                   EMA+   Q   G       + ++D   L     C  + L ++      C   
Sbjct: 213 --------EMATLAEQPYQGLSNEEVLKFVIDGGHLDLPENCPDKLLELM----RMCWQY 260

Query: 713 EPSSRPSFEDVLWNLQ 728
            P  RP+F +++ +L+
Sbjct: 261 NPKMRPTFLEIVSSLK 276

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 20/105 (19%)

Query: 495 HPHLVSLLGH-CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDRLA 551
           HP LV L  H C ++ S       ++F V E++  G    H+      PE   ++     
Sbjct: 55  HPFLVGL--HSCFQTES-------RLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEI 105

Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
            L     A++FLH     G     L  +N+LLD     KL+DYG+
Sbjct: 106 SL-----ALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 52/169 (30%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD---------------FLSK 492
           GEG+ G +YK R    G  VA      LK       K+RL+                L +
Sbjct: 8   GEGTYGVVYKARDKLTGEIVA------LK-------KIRLETEDEGVPSTAIREISLLKE 54

Query: 493 LQHPHLVSLLG--HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
           L HP++V LL   H            NK++LV+E++ +   + ++ ++ P   L   D  
Sbjct: 55  LNHPNIVRLLDVVHS----------ENKLYLVFEFL-DLDLKKYM-DSSPLTGL---DPP 99

Query: 551 AI---LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
            I   L  + + + + HS  +       L   N+L+D     KL+D+G+
Sbjct: 100 LIKSYLYQLLQGIAYCHSHRV---LHRDLKPQNLLIDREGALKLADFGL 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 23/157 (14%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G+G+ G +Y  R L     +AI+ +       +Q L   +   S L+H ++V  LG   
Sbjct: 16  LGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDS 75

Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHL-SENCP----ENVLKWSDRLAILIGVAKAVH 561
           E+G        K+F+  E +P GS  A L S+  P    E  + +  +  IL G    + 
Sbjct: 76  ENG------FFKIFM--EQVPGGSLSALLRSKWGPLKDNEQTIIFYTK-QILEG----LK 122

Query: 562 FLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGIS 597
           +LH + I       +  +N+L++ +  + K+SD+G S
Sbjct: 123 YLHDNQI---VHRDIKGDNVLVNTYSGVVKISDFGTS 156

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	747
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.98
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.98
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.98
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.98
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.98
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.98
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.97
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.97
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.97
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.97
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.97
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.97
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.97
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.97
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.97
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.97
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.96
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.96
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.96
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.95
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.95
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.95
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.94
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.94
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.94
KOG1152	772	consensus Signal transduction serine/threonine kin	99.93
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.93
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.91
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.85
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.84
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.83
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.83
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.82
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.82
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
PRK10345	210	hypothetical protein; Provisional	99.78
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.76
PRK12274	218	serine/threonine protein kinase; Provisional	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.74
smart00090	237	RIO RIO-like kinase.	99.74
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK14879	211	serine/threonine protein kinase; Provisional	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.71
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.69
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.69
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.66
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.65
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.63
PLN03150	623	hypothetical protein; Provisional	99.62
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.62
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.61
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.6
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.56
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.53
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.5
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.5
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.49
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.46
PLN03150	623	hypothetical protein; Provisional	99.36
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.29
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.08
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.04
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG1243	690	consensus Protein kinase [General function predict	98.9
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.83
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.83
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.81
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG3087	229	consensus Serine/threonine protein kinase [General	98.73
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.72
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.71
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.68
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.64
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.56
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.49
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.24
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.22
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.19
PRK09902	216	hypothetical protein; Provisional	98.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.08
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.08

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-72  Score=686.37  Aligned_cols=674  Identities=25%  Similarity=0.407  Sum_probs=422.7

Q ss_pred             ChhHHHHHHHHHhcCCCCC-CCCCCCCCCCCCcccccCCccceEeC-CCcEEEEecCCCCCCC-----------------
Q 044236            2 QTSQTQVLLQLRKHLEYPS-PLDIWGNYEGDLCNLTSTAHVSITCQ-DNSVTGLKIMGDKPVK-----------------   62 (747)
Q Consensus         2 ~~~~~~~l~~~k~~~~~~~-~l~~w~~~~~~~c~~~~~~~~~v~c~-~~~v~~l~l~~~~~~~-----------------   62 (747)
                      +++|++||++||+++.+|. .+.+|+.. .+||.|.     ||+|. .++|+.|+++++....                 
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~-----gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L  100 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQ-----GITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINL  100 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCc-----ceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence            5789999999999998775 57899754 7899987     69996 4689999988754310                 


Q ss_pred             CCCCCC----------CCCCCCCC----------------------CCCccCCCcccccccCCCCCCEEEeeccCCCCCC
Q 044236           63 ENTAYN----------GHPIPNQT----------------------LSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPL  110 (747)
Q Consensus        63 ~~~~~~----------~~~~~~~~----------------------l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~  110 (747)
                      ..+.+.          ...+..++                      |+.|...+.+|..++++++|++|+|++|.+.+.+
T Consensus       101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~  180 (968)
T PLN00113        101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI  180 (968)
T ss_pred             CCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence            000000          00111122                      2233233345556666666666666666666666


Q ss_pred             ChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCc
Q 044236          111 PDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA  190 (747)
Q Consensus       111 p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~  190 (747)
                      |..|+++++|++|+|++|.+++.+|..|+++++|++|+|++|.+++.+|..++++++|+.|++++|++++.+|..+++++
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence            66666666666666666666666666666666666666666666666666666667777777777776666676777777


Q ss_pred             cCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecc
Q 044236          191 TLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLS  266 (747)
Q Consensus       191 ~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls  266 (747)
                      +|+.|++++|.+++.+| .+.++++|+.|+|++|.+.+.+|..   .++|+.|++++|.+++.+|..+..+++|+.|+|+
T Consensus       261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  340 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW  340 (968)
T ss_pred             CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence            77777777777766665 3566777777777777777666643   3567888888888888888888888888888888


Q ss_pred             cCcCcccCCcccCCCCccceeecccccCccccCcCCCCC------------------------CCCCC------------
Q 044236          267 FNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCG------------------------SKLDS------------  310 (747)
Q Consensus       267 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~------------------------~~l~~------------  310 (747)
                      +|.+++.+|..++.+++|+.|++++|.++|.+|..+...                        +.|+.            
T Consensus       341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence            888887777666666666666666666555444322110                        00000            


Q ss_pred             ------------------------------CC-----------------------ccceeee------------------
Q 044236          311 ------------------------------IS-----------------------DKRVVKF------------------  319 (747)
Q Consensus       311 ------------------------------~~-----------------------~~~~~~~------------------  319 (747)
                                                    .+                       ....+.+                  
T Consensus       421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  500 (968)
T PLN00113        421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE  500 (968)
T ss_pred             ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence                                          00                       0000000                  


Q ss_pred             ------ccc------------------------cCCCCCCCC--------------------Cc----------------
Q 044236          320 ------GGN------------------------CLSYDTPSQ--------------------HK----------------  333 (747)
Q Consensus       320 ------~~n------------------------~~~~~~~~~--------------------~~----------------  333 (747)
                            ++|                        .+++..|..                    .+                
T Consensus       501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  580 (968)
T PLN00113        501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH  580 (968)
T ss_pred             cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence                  111                        000000000                    00                


Q ss_pred             ------------------------cccccccCCC-----CCC-CCCccceEeeeehhHHHHHHHHHHhhheeeeeeccCC
Q 044236          334 ------------------------EAFCKETNGS-----KSS-RGREIGLIAAIAFGAVLVLVLSAFGVIIYCKRCCTKG  383 (747)
Q Consensus       334 ------------------------~~~c~~~~~~-----~~~-~~~~~~~i~~iv~~~~~~l~~~~~~v~~~~~r~~~~~  383 (747)
                                              ...|......     ... ....+.+++++++++++++++++++++ ++++++..+
T Consensus       581 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  659 (968)
T PLN00113        581 NHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFV-FIRGRNNLE  659 (968)
T ss_pred             CcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHH-HHHhhhccc
Confidence                                    0001100000     000 000111222222222222222222222 212211110


Q ss_pred             CcccCCCCccccCCCCCCCchhhhhhHHHHHHHhhcCCCCCCCccccCHHHHHHHhhCCCccccccCCCCeeEEEEEe-C
Q 044236          384 RQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRL-E  462 (747)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~  462 (747)
                      .++..      .....  .  +             .........+.++++++   ...|+..+.||+|+||.||+|+. .
T Consensus       660 ~~~~~------~~~~~--~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~ig~G~~g~Vy~~~~~~  713 (968)
T PLN00113        660 LKRVE------NEDGT--W--E-------------LQFFDSKVSKSITINDI---LSSLKEENVISRGKKGASYKGKSIK  713 (968)
T ss_pred             ccccc------ccccc--c--c-------------ccccccccchhhhHHHH---HhhCCcccEEccCCCeeEEEEEECC
Confidence            00000      00000  0  0             00000001122344444   34577788999999999999995 6


Q ss_pred             CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCC
Q 044236          463 NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN  542 (747)
Q Consensus       463 ~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~  542 (747)
                      +|..||||+++.....    ...|++.+++++|||||+++|+|.+.        ...++|||||++|+|.++++.     
T Consensus       714 ~~~~vavK~~~~~~~~----~~~~~~~l~~l~HpnIv~~~~~~~~~--------~~~~lv~Ey~~~g~L~~~l~~-----  776 (968)
T PLN00113        714 NGMQFVVKEINDVNSI----PSSEIADMGKLQHPNIVKLIGLCRSE--------KGAYLIHEYIEGKNLSEVLRN-----  776 (968)
T ss_pred             CCcEEEEEEccCCccc----cHHHHHHHhhCCCCCcceEEEEEEcC--------CCCEEEEeCCCCCcHHHHHhc-----
Confidence            7999999998743322    23468899999999999999999763        367999999999999999863     


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCccccccee
Q 044236          543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI  622 (747)
Q Consensus       543 ~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~  622 (747)
                       ++|..+.+|+.|+|+||+|||+.+.++|+||||||+||+++.++.+++. ||.+........                .
T Consensus       777 -l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~----------------~  838 (968)
T PLN00113        777 -LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTK----------------C  838 (968)
T ss_pred             -CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCCC----------------c
Confidence             8999999999999999999997666899999999999999999988876 666533211100                1


Q ss_pred             eecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh---hhhHHHHHhccCcCCccccccccccC--CCCHH
Q 044236          623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE---AFLLNEMASFGSQDGRRRIVDPVVLT--TCSQE  697 (747)
Q Consensus       623 ~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~  697 (747)
                      .++..|+|||.+....++.|+|||||||++|||+||+.|++...   .....+.............+|+.+..  ....+
T Consensus       839 ~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  918 (968)
T PLN00113        839 FISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQN  918 (968)
T ss_pred             cccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHH
Confidence            23457899999988899999999999999999999999985321   12222322222222233445555432  23456


Q ss_pred             HHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhhccccccC
Q 044236          698 SLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADADQKS  743 (747)
Q Consensus       698 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~~~~~~~~  743 (747)
                      ...++.+++.+||+.||++||||.||+++|+.+.+.......+-++
T Consensus       919 ~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~~~~~~~~~~  964 (968)
T PLN00113        919 EIVEVMNLALHCTATDPTARPCANDVLKTLESASRSSSSCVTGLKF  964 (968)
T ss_pred             HHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhccccccccCccc
Confidence            6677899999999999999999999999999887755544444433

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-54  Score=459.36  Aligned_cols=287  Identities=32%  Similarity=0.557  Sum_probs=241.4

Q ss_pred             CccccCHHHHHHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeee
Q 044236          426 AYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC  505 (747)
Q Consensus       426 ~~~~~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~  505 (747)
                      ..+.|+++++..||++|...+.||+|+||.||+|.+++|+.||||++.....+..++|.+|++++.+++|||+|+|+|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            35679999999999999999999999999999999999999999988754433145699999999999999999999999


Q ss_pred             eccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC
Q 044236          506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE  585 (747)
Q Consensus       506 ~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  585 (747)
                      .+.+       .+.+||||||++|+|.++|+..... +++|..|++||.++|+||+|||+.+.++||||||||+|||||+
T Consensus       141 ~e~~-------~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~  212 (361)
T KOG1187|consen  141 LEGG-------EHRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDE  212 (361)
T ss_pred             ecCC-------ceEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECC
Confidence            9743       1589999999999999999875333 8999999999999999999999998889999999999999999


Q ss_pred             CCcEEEecccccccccc-cchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          586 HRIAKLSDYGISIIMEE-HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       586 ~~~~kl~DFGla~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      ++++||+|||+|+.... .......            ..++..|.+||....+..+.|+|||||||+|+|++||+.+.+.
T Consensus       213 ~~~aKlsDFGLa~~~~~~~~~~~~~------------~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~  280 (361)
T KOG1187|consen  213 DFNAKLSDFGLAKLGPEGDTSVSTT------------VMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQ  280 (361)
T ss_pred             CCCEEccCccCcccCCccccceeee------------cCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCC
Confidence            99999999999976543 2111100            0345668888988889999999999999999999999988774


Q ss_pred             C----hhhhHHHHHhccCcCCcccccccccc-CCCCH-HHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          665 G----EAFLLNEMASFGSQDGRRRIVDPVVL-TTCSQ-ESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       665 ~----~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~-~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      .    ......|...........+++||.+. ..++. +...++..++.+|++.+|.+||+|.||+++|+....
T Consensus       281 ~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~  354 (361)
T KOG1187|consen  281 SRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILS  354 (361)
T ss_pred             CCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhcc
Confidence            3    22345555444445578899999987 55554 678889999999999999999999999999965543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-48  Score=405.60  Aligned_cols=255  Identities=26%  Similarity=0.423  Sum_probs=204.2

Q ss_pred             ccccccCCCCeeEEEEEeCCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          444 SLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      ..+.||+|+||+||+|.+.....||||++.....  ...++|.+|+.+|.+++|||||+|+|+|.+..       ...+|
T Consensus        45 ~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~-------~~~~i  117 (362)
T KOG0192|consen   45 IEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPP-------GSLCI  117 (362)
T ss_pred             hhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC-------CceEE
Confidence            3455999999999999997555599999985432  22569999999999999999999999998731       15899


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-cccCCCCCCceeecCCC-cEEEeccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG-SFSNRLTTNNILLDEHR-IAKLSDYGISII  599 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~-ivHrDlk~~NILld~~~-~~kl~DFGla~~  599 (747)
                      |||||++|+|.++++.. ....++|..++.++.|||+||.|||+   .. ||||||||+|||++.++ ++||+|||+++.
T Consensus       118 VtEy~~~GsL~~~l~~~-~~~~l~~~~~l~~aldiArGm~YLH~---~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~  193 (362)
T KOG0192|consen  118 VTEYMPGGSLSVLLHKK-RKRKLPLKVRLRIALDIARGMEYLHS---EGPIIHRDLKSDNILVDLKGKTLKIADFGLSRE  193 (362)
T ss_pred             EEEeCCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhc---CCCeeecccChhhEEEcCCCCEEEECCCcccee
Confidence            99999999999999874 35679999999999999999999999   45 99999999999999998 999999999987


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeee--ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD--IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      .........            ...|+..|||||++.  ...|+.|+|||||||++|||+||+.||.......+...... 
T Consensus       194 ~~~~~~~~~------------~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~-  260 (362)
T KOG0192|consen  194 KVISKTSMT------------SVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVV-  260 (362)
T ss_pred             ecccccccc------------CCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHh-
Confidence            654321000            124677899999999  56899999999999999999999999986554322221111 


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                       ..     ..|.+...+++    .+..++.+||+.||++||+|.+|+..|+.+..
T Consensus       261 -~~-----~Rp~~p~~~~~----~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~  305 (362)
T KOG0192|consen  261 -GG-----LRPPIPKECPP----HLSSLMERCWLVDPSRRPSFLEIVSRLESIMS  305 (362)
T ss_pred             -cC-----CCCCCCccCCH----HHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHH
Confidence             11     11222222344    48889999999999999999999999997755

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-47  Score=400.80  Aligned_cols=253  Identities=23%  Similarity=0.371  Sum_probs=204.6

Q ss_pred             ccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          444 SLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      .++.||+|.||+||.|+++....||||.++.. ....++|.+|+++|++|+|+|||+++|+|...+        .++|||
T Consensus       210 l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~--------piyIVt  280 (468)
T KOG0197|consen  210 LIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQE--------PIYIVT  280 (468)
T ss_pred             HHHHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEecCC--------ceEEEE
Confidence            45779999999999999988889999999854 445578999999999999999999999998743        689999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      |||++|+|.++|+.. .+..+.-.+.+.++.|||+||+||++   +++|||||.++|||++++..+||+|||+||...+.
T Consensus       281 E~m~~GsLl~yLr~~-~~~~l~~~~Ll~~a~qIaeGM~YLes---~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~  356 (468)
T KOG0197|consen  281 EYMPKGSLLDYLRTR-EGGLLNLPQLLDFAAQIAEGMAYLES---KNYIHRDLAARNILVDEDLVVKISDFGLARLIGDD  356 (468)
T ss_pred             EecccCcHHHHhhhc-CCCccchHHHHHHHHHHHHHHHHHHh---CCccchhhhhhheeeccCceEEEcccccccccCCC
Confidence            999999999999873 35568889999999999999999999   88999999999999999999999999999965544


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCcCCc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQDGR  682 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~  682 (747)
                      +.....+.       ..    ...|.|||.+...+|+.|||||||||+||||+| |+.|++......+-+....+     
T Consensus       357 ~Y~~~~~~-------kf----PIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~G-----  420 (468)
T KOG0197|consen  357 EYTASEGG-------KF----PIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERG-----  420 (468)
T ss_pred             ceeecCCC-------CC----CceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhcc-----
Confidence            43222211       00    124567888999999999999999999999999 68887754433332222211     


Q ss_pred             cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       683 ~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                             .+-.+|+.++..+.++|..||+.+|++||||+.+...|+....
T Consensus       421 -------yRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~  463 (468)
T KOG0197|consen  421 -------YRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFT  463 (468)
T ss_pred             -------CcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhh
Confidence                   1122234444559999999999999999999998888887644

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=3e-46  Score=372.98  Aligned_cols=250  Identities=20%  Similarity=0.311  Sum_probs=203.0

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++.++.||+|..|+|||+++ .+++.+|+|++... +....+++.+|++++++.+||+||++||+|+..+      . .+
T Consensus        81 le~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~------~-~i  153 (364)
T KOG0581|consen   81 LERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNG------E-EI  153 (364)
T ss_pred             hhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCC------c-eE
Confidence            33467899999999999995 57999999999643 4555688999999999999999999999999853      1 59


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      .|+||||.+|||++++..   .+.+++...-+|+.+|++||.|||+.  .+||||||||+|||++..|++||||||.++.
T Consensus       154 sI~mEYMDgGSLd~~~k~---~g~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGVS~~  228 (364)
T KOG0581|consen  154 SICMEYMDGGSLDDILKR---VGRIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGVSGI  228 (364)
T ss_pred             EeehhhcCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEeccccccHH
Confidence            999999999999999875   35689999999999999999999964  7899999999999999999999999999987


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh---hhhHHHHHhc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE---AFLLNEMASF  676 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~---~~~~~~~~~~  676 (747)
                      +......              .+.||..||+||.+.+..|+.++||||||+.++|+++|+.|+....   ...+..+..+
T Consensus       229 lvnS~a~--------------tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~I  294 (364)
T KOG0581|consen  229 LVNSIAN--------------TFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAI  294 (364)
T ss_pred             hhhhhcc--------------cccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHH
Confidence            6543111              1467889999999999999999999999999999999999887531   1112222221


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...      ..|.++..   .++.++.+++..|++.||.+||++.|++++
T Consensus       295 v~~------ppP~lP~~---~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  295 VDE------PPPRLPEG---EFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             hcC------CCCCCCcc---cCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            111      11223332   244459999999999999999999999864

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=8e-46  Score=372.65  Aligned_cols=205  Identities=24%  Similarity=0.382  Sum_probs=179.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ..+|...+.||+|+||+||+|++ +++..||||.+...  .....+....|+.+|+.++|||||++++++...       
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~-------   81 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDD-------   81 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecC-------
Confidence            46788888899999999999994 56899999999765  455667788999999999999999999999874       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC------CcE
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH------RIA  589 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~------~~~  589 (747)
                       +.+|+|||||.+|||.+|++.+   +.+++.+....+.|+|.||++||+   .+||||||||+||||+..      -.+
T Consensus        82 -~~i~lVMEyC~gGDLs~yi~~~---~~l~e~t~r~Fm~QLA~alq~L~~---~~IiHRDLKPQNiLLs~~~~~~~~~~L  154 (429)
T KOG0595|consen   82 -DFIYLVMEYCNGGDLSDYIRRR---GRLPEATARHFMQQLASALQFLHE---NNIIHRDLKPQNILLSTTARNDTSPVL  154 (429)
T ss_pred             -CeEEEEEEeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCcceEEeccCCCCCCCceE
Confidence             4899999999999999999874   469999999999999999999999   899999999999999764      468


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL  669 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~  669 (747)
                      ||+|||+||.+......             ...||++.|||||++...+|+.|+|+||.|+|+|||++|+.||+......
T Consensus       155 KIADFGfAR~L~~~~~a-------------~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~e  221 (429)
T KOG0595|consen  155 KIADFGFARFLQPGSMA-------------ETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKE  221 (429)
T ss_pred             EecccchhhhCCchhHH-------------HHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHH
Confidence            99999999988643321             23688999999999999999999999999999999999999998654433


Q ss_pred             H
Q 044236          670 L  670 (747)
Q Consensus       670 ~  670 (747)
                      +
T Consensus       222 L  222 (429)
T KOG0595|consen  222 L  222 (429)
T ss_pred             H
Confidence            3

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-46  Score=407.35  Aligned_cols=262  Identities=26%  Similarity=0.369  Sum_probs=210.1

Q ss_pred             hCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      .+....+.||+|.||+||+|+..      +.+.||||.++..... ..++|++|+++|+.++|||||+|+|+|.+.    
T Consensus       486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~----  561 (774)
T KOG1026|consen  486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREG----  561 (774)
T ss_pred             hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccC----
Confidence            34455678999999999999842      3578999999976544 778999999999999999999999999884    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCC-----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCP-----------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                          +..++|+|||..|||.++|+.+.+           ..+|+-.+.+.||.|||.||.||-+   ..+|||||..+|+
T Consensus       562 ----~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~---~~FVHRDLATRNC  634 (774)
T KOG1026|consen  562 ----DPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS---HHFVHRDLATRNC  634 (774)
T ss_pred             ----CeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---Ccccccchhhhhc
Confidence                478999999999999999974321           2238899999999999999999999   7899999999999


Q ss_pred             eecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCC
Q 044236          582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPI  660 (747)
Q Consensus       582 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~  660 (747)
                      ||.++..+||+|||++|.+...+.+...+   ..+   +    .-.||+||.+.+++||++||||||||||||+++ |+.
T Consensus       635 LVge~l~VKIsDfGLsRdiYssDYYk~~~---~t~---l----PIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~Q  704 (774)
T KOG1026|consen  635 LVGENLVVKISDFGLSRDIYSSDYYKVRG---NTL---L----PIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQ  704 (774)
T ss_pred             eeccceEEEecccccchhhhhhhhhcccC---Cce---e----eeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccC
Confidence            99999999999999998776554443221   111   1    124778888999999999999999999999998 688


Q ss_pred             CCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      |+..-....+-+..+.   ...         -.+|+.++.++++||..||+.+|.+||+|.||-.+|+...+..
T Consensus       705 Py~glSn~EVIe~i~~---g~l---------L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  705 PYYGLSNQEVIECIRA---GQL---------LSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQAS  766 (774)
T ss_pred             cccccchHHHHHHHHc---CCc---------ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcC
Confidence            8765433333222221   111         2345555666999999999999999999999999999887643

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.3e-45  Score=364.04  Aligned_cols=251  Identities=21%  Similarity=0.314  Sum_probs=201.1

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch-------hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK-------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~-------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      +.|.+.+.+|+|+||.|-+|. .++|+.||||++...+.       .....+.+|+++|++|+|||||+++++|...   
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~---  248 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVP---  248 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecC---
Confidence            446778899999999999998 67899999999975431       1234567999999999999999999999874   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC---Cc
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH---RI  588 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~  588 (747)
                           +..|||||||++|+|.+.+-.+   +.+.+...+.++.|++.|+.|||+   .+|+||||||+|||+..+   ..
T Consensus       249 -----ds~YmVlE~v~GGeLfd~vv~n---k~l~ed~~K~~f~Qll~avkYLH~---~GI~HRDiKPeNILl~~~~e~~l  317 (475)
T KOG0615|consen  249 -----DSSYMVLEYVEGGELFDKVVAN---KYLREDLGKLLFKQLLTAVKYLHS---QGIIHRDIKPENILLSNDAEDCL  317 (475)
T ss_pred             -----CceEEEEEEecCccHHHHHHhc---cccccchhHHHHHHHHHHHHHHHH---cCcccccCCcceEEeccCCcceE
Confidence                 3679999999999999988753   457777888999999999999999   899999999999999755   78


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC---CcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT---KLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      +||+|||+|+........             ...||++.|.|||++....+   ..|+|+||+|||||-+++|-+||.+.
T Consensus       318 lKItDFGlAK~~g~~sfm-------------~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~  384 (475)
T KOG0615|consen  318 LKITDFGLAKVSGEGSFM-------------KTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEE  384 (475)
T ss_pred             EEecccchhhccccceeh-------------hhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccc
Confidence            999999999876532211             12689999999999987653   34889999999999999999999764


Q ss_pred             hhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          666 EAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       666 ~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      -... +.+.+..+...     +-|    ....+..++.++++.++|..||++|||+.|+++.
T Consensus       385 ~~~~sl~eQI~~G~y~-----f~p----~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~h  437 (475)
T KOG0615|consen  385 YTDPSLKEQILKGRYA-----FGP----LQWDRISEEALDLINWMLVVDPENRPSADEALNH  437 (475)
T ss_pred             cCCccHHHHHhcCccc-----ccC----hhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcC
Confidence            4332 33322222211     111    2234566779999999999999999999999863

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-45  Score=351.48  Aligned_cols=259  Identities=18%  Similarity=0.292  Sum_probs=209.1

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .+|++++.||+|+||+|||+. ..+|..||.|.++..  +....++...|+.+|++|+|||||+++++-...+      .
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~------~   92 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIED------N   92 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhcc------c
Confidence            467888999999999999998 788999999999843  4455678889999999999999999998544322      2


Q ss_pred             ceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceeecCCCcEEEecc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVIS-GSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~-~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      ..++||||||..|||...++.. .....+++.++++++.|+++||.++|+.... .|+||||||.||+|+.+|.+|++||
T Consensus        93 evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDf  172 (375)
T KOG0591|consen   93 EVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDF  172 (375)
T ss_pred             hhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccc
Confidence            3489999999999999998753 2356799999999999999999999984432 3899999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |++|.+....+...            .+.||+.||.||.+....|+.||||||+||++|||+.-.+||....-..+..-+
T Consensus       173 GL~r~l~s~~tfA~------------S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI  240 (375)
T KOG0591|consen  173 GLGRFLSSKTTFAH------------SLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKI  240 (375)
T ss_pred             hhHhHhcchhHHHH------------hhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence            99998876544322            246889999999999999999999999999999999999898766544444333


Q ss_pred             hccCcCCccccccccccCCCC-HHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCS-QESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ..+.   .         +.+| +..+..+..|+..|++.||+.||+...++.+++
T Consensus       241 ~qgd---~---------~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~  283 (375)
T KOG0591|consen  241 EQGD---Y---------PPLPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQ  283 (375)
T ss_pred             HcCC---C---------CCCcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHH
Confidence            2221   1         1122 445666899999999999999998655555554

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.3e-44  Score=377.57  Aligned_cols=248  Identities=22%  Similarity=0.347  Sum_probs=208.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeec---cchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF---LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~---~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ..|...+.||+|||+.||+++. ..|+.||+|++..   .+....+.+.+||++.+.|+|||||+++++|.+.       
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs-------   90 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDS-------   90 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecC-------
Confidence            4588889999999999999995 8899999999974   2445567889999999999999999999999884       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +.+|||.|+|++|+|..+++.   .+++++.++..+..||+.||.|||+   .+|||||||..|++|+++.++||+|||
T Consensus        91 -~nVYivLELC~~~sL~el~Kr---rk~ltEpEary~l~QIv~GlkYLH~---~~IiHRDLKLGNlfL~~~~~VKIgDFG  163 (592)
T KOG0575|consen   91 -NNVYIVLELCHRGSLMELLKR---RKPLTEPEARYFLRQIVEGLKYLHS---LGIIHRDLKLGNLFLNENMNVKIGDFG  163 (592)
T ss_pred             -CceEEEEEecCCccHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHHHh---cCceecccchhheeecCcCcEEecccc
Confidence             489999999999999999874   5679999999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      ||..++.....            ...+|||+-|.|||++.....+..+||||+|||||.|++|++||...... ....+.
T Consensus       164 LAt~le~~~Er------------k~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik  231 (592)
T KOG0575|consen  164 LATQLEYDGER------------KKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIK  231 (592)
T ss_pred             eeeeecCcccc------------cceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHH
Confidence            99877643211            12379999999999999999999999999999999999999999865433 222222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      . ...      .       .|...+.+..+|+.+.|+.||.+|||+++|+..=
T Consensus       232 ~-~~Y------~-------~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~  270 (592)
T KOG0575|consen  232 L-NEY------S-------MPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDHP  270 (592)
T ss_pred             h-cCc------c-------cccccCHHHHHHHHHHhcCCcccCCCHHHHhcCH
Confidence            1 111      0       1223334478899999999999999999999754

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.1e-43  Score=342.37  Aligned_cols=259  Identities=21%  Similarity=0.298  Sum_probs=198.5

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      +.|+.+..+|+|+||.||||+ .++|+.||||++.....  .-.+-..+|+++|++++|+|+|.|+.+|...        
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrk--------   73 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRK--------   73 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhc--------
Confidence            457778899999999999999 45699999999975432  2334568999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...+||+|||+. ++.+-|...  ...++.....+|..|+++|+.|+|+   .+||||||||+||||..++.+||||||+
T Consensus        74 rklhLVFE~~dh-TvL~eLe~~--p~G~~~~~vk~~l~Q~l~ai~~cHk---~n~IHRDIKPENILit~~gvvKLCDFGF  147 (396)
T KOG0593|consen   74 RKLHLVFEYCDH-TVLHELERY--PNGVPSELVKKYLYQLLKAIHFCHK---NNCIHRDIKPENILITQNGVVKLCDFGF  147 (396)
T ss_pred             ceeEEEeeecch-HHHHHHHhc--cCCCCHHHHHHHHHHHHHHhhhhhh---cCeecccCChhheEEecCCcEEeccchh
Confidence            489999999988 444445443  3458888899999999999999999   7789999999999999999999999999


Q ss_pred             cccccc-cchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCC-CCChhhhHHHH
Q 044236          597 SIIMEE-HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVT-GKGEAFLLNEM  673 (747)
Q Consensus       597 a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~-~~~~~~~~~~~  673 (747)
                      ||.+.. .+.             |..+..+..|.|||++.+ .+|...+||||.||++.||+||.+-| +.++.+++..+
T Consensus       148 AR~L~~pgd~-------------YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I  214 (396)
T KOG0593|consen  148 ARTLSAPGDN-------------YTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLI  214 (396)
T ss_pred             hHhhcCCcch-------------hhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHH
Confidence            987652 111             122344667889998876 68999999999999999999996655 45666666554


Q ss_pred             HhccC------------cCCc--ccccccccc---CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGS------------QDGR--RRIVDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~------------~~~~--~~~~d~~~~---~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .....            .+..  ..+++|.-+   ..-.+.....++++++.|++.||++|++-+|++.
T Consensus       215 ~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  215 RKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             HHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            33211            1111  111222111   1112334556899999999999999999999874

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-43  Score=350.52  Aligned_cols=242  Identities=24%  Similarity=0.316  Sum_probs=197.5

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|+++++||+|+||+||+++ .++++.+|+|+++..+   ..+.+...+|..+|.+++||.||+++..|.+       
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt-------   96 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQT-------   96 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEeccc-------
Confidence            4679999999999999999998 5669999999998543   3456788999999999999999999987766       


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       ...+|+|+||+.||+|+.+|++   .+.+++..+..++.+|+.||.|||+   .+||||||||+|||||.+|+++|+||
T Consensus        97 -~~kLylVld~~~GGeLf~hL~~---eg~F~E~~arfYlaEi~lAL~~LH~---~gIiyRDlKPENILLd~~GHi~LtDF  169 (357)
T KOG0598|consen   97 -EEKLYLVLDYLNGGELFYHLQR---EGRFSEDRARFYLAEIVLALGYLHS---KGIIYRDLKPENILLDEQGHIKLTDF  169 (357)
T ss_pred             -CCeEEEEEeccCCccHHHHHHh---cCCcchhHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHeeecCCCcEEEecc
Confidence             3489999999999999999986   3458889999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.........            ..+|||..|||||++....|+..+|+||+||++|||++|.+||...+.....+.+
T Consensus       170 gL~k~~~~~~~~t------------~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I  237 (357)
T KOG0598|consen  170 GLCKEDLKDGDAT------------RTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKI  237 (357)
T ss_pred             ccchhcccCCCcc------------ccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHH
Confidence            9997543322111            1268999999999999999999999999999999999999998765533222211


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP  718 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  718 (747)
                      ..   .+   ..      ..+.-....+.+++.+.+..||++|-
T Consensus       238 ~~---~k---~~------~~p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  238 LK---GK---LP------LPPGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             hc---Cc---CC------CCCccCCHHHHHHHHHHhccCHHHhc
Confidence            11   11   00      01111233478899999999999994

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-43  Score=362.65  Aligned_cols=262  Identities=17%  Similarity=0.258  Sum_probs=208.7

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhc-HHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~-~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|..++.||.|.||.||+|+ ..+|..||||+++..-... .-.-.||+..|++|. |||||++..++.+.+     
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~-----   82 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDND-----   82 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccC-----
Confidence            35678889999999999999999 6779999999997532221 123368999999998 999999999998743     


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +.+++|||||+. +|+++++++  ...++...+..|+.||++||+|+|.   .|++|||+||+|||+.....+||+||
T Consensus        83 --~~L~fVfE~Md~-NLYqLmK~R--~r~fse~~irnim~QilqGL~hiHk---~GfFHRDlKPENiLi~~~~~iKiaDF  154 (538)
T KOG0661|consen   83 --RILYFVFEFMDC-NLYQLMKDR--NRLFSESDIRNIMYQILQGLAHIHK---HGFFHRDLKPENILISGNDVIKIADF  154 (538)
T ss_pred             --ceEeeeHHhhhh-hHHHHHhhc--CCcCCHHHHHHHHHHHHHHHHHHHh---cCcccccCChhheEecccceeEeccc
Confidence              389999999977 999999876  6789999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCC-CCCCChhhhHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPI-VTGKGEAFLLNE  672 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~-p~~~~~~~~~~~  672 (747)
                      |+||.+....             +|..+..|..|.|||++. ...|+.+.||||+|||++|+++-++ +.+..+.+++.+
T Consensus       155 GLARev~Skp-------------PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~K  221 (538)
T KOG0661|consen  155 GLAREVRSKP-------------PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYK  221 (538)
T ss_pred             ccccccccCC-------------CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHH
Confidence            9998765432             233345677889999875 5578999999999999999999754 556677777777


Q ss_pred             HHhccCcCCcccccc------------c-----cccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIVD------------P-----VVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d------------~-----~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +......+.......            |     .+..-.+ .+..++.+++.+|+.+||.+|||+.|++++
T Consensus       222 Ic~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p-~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  222 ICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLP-NASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             HHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCc-ccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence            766544332211111            0     0111112 256668899999999999999999999875

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-43  Score=366.54  Aligned_cols=240  Identities=25%  Similarity=0.433  Sum_probs=197.4

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEe
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYE  524 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~E  524 (747)
                      ++.||.|+.|.||+|+++ ++.||||+++..++       .+|+-|++|+|||||.|.|+|...        ..+|||||
T Consensus       129 LeWlGSGaQGAVF~Grl~-netVAVKKV~elkE-------TdIKHLRkLkH~NII~FkGVCtqs--------PcyCIiME  192 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRLH-NETVAVKKVRELKE-------TDIKHLRKLKHPNIITFKGVCTQS--------PCYCIIME  192 (904)
T ss_pred             hhhhccCcccceeeeecc-CceehhHHHhhhhh-------hhHHHHHhccCcceeeEeeeecCC--------ceeEEeee
Confidence            678999999999999996 57899998875443       367789999999999999999873        48999999


Q ss_pred             ccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccc
Q 044236          525 YIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE  604 (747)
Q Consensus       525 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~  604 (747)
                      ||+.|-|+.+|+.   +..++......+..+||.||.|||.   ..|||||||+-||||..+-.+||+|||-++...+..
T Consensus       193 fCa~GqL~~VLka---~~~itp~llv~Wsk~IA~GM~YLH~---hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~S  266 (904)
T KOG4721|consen  193 FCAQGQLYEVLKA---GRPITPSLLVDWSKGIAGGMNYLHL---HKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKS  266 (904)
T ss_pred             ccccccHHHHHhc---cCccCHHHHHHHHHHhhhhhHHHHH---hhHhhhccCCCceEeeccceEEeccccchHhhhhhh
Confidence            9999999999986   4567888888999999999999999   788999999999999999999999999997655432


Q ss_pred             hhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccc
Q 044236          605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRR  684 (747)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  684 (747)
                      +             ...++|+.+|||||++.....++|+||||||||||||+||..||.+-+...+-    ++...   .
T Consensus       267 T-------------kMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAII----wGVGs---N  326 (904)
T KOG4721|consen  267 T-------------KMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAII----WGVGS---N  326 (904)
T ss_pred             h-------------hhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeE----EeccC---C
Confidence            1             12267899999999999999999999999999999999999999754432211    11111   1


Q ss_pred             cccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       685 ~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      .+.-..+..||..    +.-|+++||+..|..||+|++|+.+|+.+
T Consensus       327 sL~LpvPstcP~G----fklL~Kqcw~sKpRNRPSFrqil~HldIa  368 (904)
T KOG4721|consen  327 SLHLPVPSTCPDG----FKLLLKQCWNSKPRNRPSFRQILLHLDIA  368 (904)
T ss_pred             cccccCcccCchH----HHHHHHHHHhcCCCCCccHHHHHHHHhhc
Confidence            1122233455555    67788999999999999999999999755

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-43  Score=379.75  Aligned_cols=273  Identities=20%  Similarity=0.345  Sum_probs=214.9

Q ss_pred             ccCHHHHHHHhhCC---------CccccccCCCCeeEEEEEeCC----CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCC
Q 044236          429 TFYLEELKEATNNF---------DSLSFMGEGSRGKLYKGRLEN----GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQ  494 (747)
Q Consensus       429 ~~~~~~l~~~~~~f---------~~~~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~  494 (747)
                      .+++||-.+|...|         .+.++||.|.||+||+|+++-    ...||||.++... +....+|..|..||.+++
T Consensus       609 P~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFd  688 (996)
T KOG0196|consen  609 PHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFD  688 (996)
T ss_pred             CccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCC
Confidence            45666665555554         456889999999999999642    4689999998653 445679999999999999


Q ss_pred             CCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccC
Q 044236          495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSN  574 (747)
Q Consensus       495 H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHr  574 (747)
                      ||||++|.|+....        ..++||.|||+||+|+.+|+.++  +.++|.+...+.++||.||.||-+   .++|||
T Consensus       689 HPNIIrLEGVVTks--------~PvMIiTEyMENGsLDsFLR~~D--GqftviQLVgMLrGIAsGMkYLsd---m~YVHR  755 (996)
T KOG0196|consen  689 HPNIIRLEGVVTKS--------KPVMIITEYMENGSLDSFLRQND--GQFTVIQLVGMLRGIASGMKYLSD---MNYVHR  755 (996)
T ss_pred             CCcEEEEEEEEecC--------ceeEEEhhhhhCCcHHHHHhhcC--CceEeehHHHHHHHHHHHhHHHhh---cCchhh
Confidence            99999999999874        47899999999999999999874  459999999999999999999999   899999


Q ss_pred             CCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHH
Q 044236          575 RLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE  654 (747)
Q Consensus       575 Dlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~E  654 (747)
                      ||.++|||++.+..+||+|||++|.++++.......     .-|...+    .|.|||.+..+++|.+||||||||||||
T Consensus       756 DLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt-----~GGKIPi----RWTAPEAIa~RKFTsASDVWSyGIVmWE  826 (996)
T KOG0196|consen  756 DLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTT-----LGGKIPI----RWTAPEAIAYRKFTSASDVWSYGIVMWE  826 (996)
T ss_pred             hhhhhheeeccceEEEeccccceeecccCCCccccc-----cCCccce----eecChhHhhhcccCchhhccccceEEEE
Confidence            999999999999999999999999886654111110     0111212    3557788899999999999999999999


Q ss_pred             Hhh-CCCCCCC-ChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          655 SLV-GPIVTGK-GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       655 llt-g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      .++ |..|+.+ +..+.+..+..-.      ++..   +.+||.    .+.+||..||++|-.+||+|.||+..|.++.+
T Consensus       827 VmSyGERPYWdmSNQdVIkaIe~gy------RLPp---PmDCP~----aL~qLMldCWqkdR~~RP~F~qiV~~lDklIr  893 (996)
T KOG0196|consen  827 VMSYGERPYWDMSNQDVIKAIEQGY------RLPP---PMDCPA----ALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIR  893 (996)
T ss_pred             ecccCCCcccccchHHHHHHHHhcc------CCCC---CCCCcH----HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhc
Confidence            886 7777654 4444444332211      1111   134444    48999999999999999999999999998877


Q ss_pred             Hhhh
Q 044236          733 VQAT  736 (747)
Q Consensus       733 ~~~~  736 (747)
                      ...+
T Consensus       894 nP~S  897 (996)
T KOG0196|consen  894 NPNS  897 (996)
T ss_pred             Cchh
Confidence            5443

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.7e-42  Score=353.80  Aligned_cols=264  Identities=19%  Similarity=0.302  Sum_probs=203.5

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .+.|+.+++||+|.||.||||+ ..+|+.||+|+++...  ........+||.+|++|+|||||+|.+..++..      
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~------  189 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKL------  189 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecC------
Confidence            3457778899999999999999 7889999999998654  455667789999999999999999999988742      


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ...+|||+|||+. ||.-++...  .-.++..++..++.|++.||+|+|+   .+|+|||||.+|||||.+|.+||+|||
T Consensus       190 ~~siYlVFeYMdh-DL~GLl~~p--~vkft~~qIKc~mkQLl~Gl~~cH~---~gvlHRDIK~SNiLidn~G~LKiaDFG  263 (560)
T KOG0600|consen  190 SGSIYLVFEYMDH-DLSGLLSSP--GVKFTEPQIKCYMKQLLEGLEYCHS---RGVLHRDIKGSNILIDNNGVLKIADFG  263 (560)
T ss_pred             CceEEEEEecccc-hhhhhhcCC--CcccChHHHHHHHHHHHHHHHHHhh---cCeeeccccccceEEcCCCCEEecccc
Confidence            3479999999988 898888653  4569999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCC-CChhhhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTG-KGEAFLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~-~~~~~~~~~~  673 (747)
                      ||++..........           .-.-|..|.+||++.+ ..|+.++|+||.||||.||++|++.+. ..+.+++..+
T Consensus       264 LAr~y~~~~~~~~T-----------~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kI  332 (560)
T KOG0600|consen  264 LARFYTPSGSAPYT-----------SRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKI  332 (560)
T ss_pred             ceeeccCCCCcccc-----------cceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHH
Confidence            99976544322111           1122445677887765 469999999999999999999987665 5566666665


Q ss_pred             HhccCcCCcc-----cc-----ccccc--cC---CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGRR-----RI-----VDPVV--LT---TCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~-----~~-----~d~~~--~~---~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......+...     .+     +.|.-  ..   +.........++|+...|..||++|.|+.++++
T Consensus       333 fklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  333 FKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             HHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence            5443322110     11     11110  00   001122345788999999999999999999875

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-42  Score=364.59  Aligned_cols=266  Identities=20%  Similarity=0.313  Sum_probs=210.3

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      ++.....+++.+.+.||+|+||+||+|+|..  .||||.++...  ....+.|++|+..+++-||.||+-|.|||...  
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p--  460 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP--  460 (678)
T ss_pred             cccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC--
Confidence            4444445556678899999999999999863  59999998654  45678999999999999999999999999874  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  590 (747)
                             ...||..+|++-+|+.++|..  +..++..+.+.|+.|||+||.|||.   ++|||||||+.||++.+++.+|
T Consensus       461 -------~~AIiTqwCeGsSLY~hlHv~--etkfdm~~~idIAqQiaqGM~YLHA---K~IIHrDLKSnNIFl~~~~kVk  528 (678)
T KOG0193|consen  461 -------PLAIITQWCEGSSLYTHLHVQ--ETKFDMNTTIDIAQQIAQGMDYLHA---KNIIHRDLKSNNIFLHEDLKVK  528 (678)
T ss_pred             -------ceeeeehhccCchhhhhccch--hhhhhHHHHHHHHHHHHHhhhhhhh---hhhhhhhccccceEEccCCcEE
Confidence                   359999999999999999865  4568889999999999999999999   8999999999999999999999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec---cCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI---QRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      |+|||++..-...          .+..++....++..|||||++..   ..|+..+||||||||+|||+||..||.....
T Consensus       529 IgDFGLatvk~~w----------~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~  598 (678)
T KOG0193|consen  529 IGDFGLATVKTRW----------SGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNR  598 (678)
T ss_pred             Eecccceeeeeee----------ccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCCh
Confidence            9999998542211          01112223445678899998863   4689999999999999999999999986555


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      +++-++...+.-     ..|..   .....+.++|.+|+..||..+|++||.+.+|+.+|+....
T Consensus       599 dqIifmVGrG~l-----~pd~s---~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  599 DQIIFMVGRGYL-----MPDLS---KIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             hheEEEeccccc-----Cccch---hhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence            544333222110     11111   1112334458999999999999999999999999988776

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-42  Score=356.49  Aligned_cols=261  Identities=21%  Similarity=0.296  Sum_probs=211.6

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~  512 (747)
                      ...||...+.||+|+|++||+|+ .++++.+|||++...   ++...+-+.+|-++|.+| .||.||+||-.|.+.    
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~----  146 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDE----  146 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecc----
Confidence            45688899999999999999998 677999999998742   334456678899999999 899999999888763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                          ..+|+|+||+++|+|.++|++   .+.++......++.+|+.||+|||+   .+||||||||+|||||.+|++||+
T Consensus       147 ----~sLYFvLe~A~nGdll~~i~K---~Gsfde~caR~YAAeIldAleylH~---~GIIHRDlKPENILLd~dmhikIT  216 (604)
T KOG0592|consen  147 ----ESLYFVLEYAPNGDLLDLIKK---YGSFDETCARFYAAEILDALEYLHS---NGIIHRDLKPENILLDKDGHIKIT  216 (604)
T ss_pred             ----cceEEEEEecCCCcHHHHHHH---hCcchHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeEcCCCcEEEe
Confidence                379999999999999999987   4569999899999999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccc-cceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYG-FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      |||-|+.+................-. ...+.|++.|..||++.....+..+|+|+||||||+|+.|++||.......+.
T Consensus       217 DFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliF  296 (604)
T KOG0592|consen  217 DFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIF  296 (604)
T ss_pred             eccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHH
Confidence            99999998765544221111111111 13478999999999999999999999999999999999999999876554433


Q ss_pred             -HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 -EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 -~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                       ++...          +=.+...++    +.+.+|+.+.+..||.+|+|.+||-++
T Consensus       297 qkI~~l----------~y~fp~~fp----~~a~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  297 QKIQAL----------DYEFPEGFP----EDARDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             HHHHHh----------cccCCCCCC----HHHHHHHHHHHccCccccccHHHHhhC
Confidence             33221          111223334    448889999999999999999988764

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.4e-41  Score=322.76  Aligned_cols=261  Identities=18%  Similarity=0.293  Sum_probs=204.5

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .+|...+.+|+|.||.||+|+ .++|+.||||+++..+.  .-.....+||..|+.++|+|||.++++|-..        
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~--------   73 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHK--------   73 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCC--------
Confidence            357778899999999999999 67899999999985432  2235678999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ..+.||+|||+. ||...++++  ...++......++.++.+|++|||+   ..|+||||||.|+|++.+|.+||+|||+
T Consensus        74 ~~l~lVfEfm~t-dLe~vIkd~--~i~l~pa~iK~y~~m~LkGl~y~H~---~~IlHRDlKPnNLLis~~g~lKiADFGL  147 (318)
T KOG0659|consen   74 SNLSLVFEFMPT-DLEVVIKDK--NIILSPADIKSYMLMTLKGLAYCHS---KWILHRDLKPNNLLISSDGQLKIADFGL  147 (318)
T ss_pred             CceEEEEEeccc-cHHHHhccc--ccccCHHHHHHHHHHHHHHHHHHHh---hhhhcccCCccceEEcCCCcEEeecccc
Confidence            478999999987 999999875  5678999999999999999999999   7889999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCC-CCChhhhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVT-GKGEAFLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~-~~~~~~~~~~~~  674 (747)
                      |+..........            .-.-+..|.|||++- .+.|+..+||||.|||+.||+-|.+.+ +.++.+++..+.
T Consensus       148 Ar~f~~p~~~~~------------~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If  215 (318)
T KOG0659|consen  148 ARFFGSPNRIQT------------HQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIF  215 (318)
T ss_pred             hhccCCCCcccc------------cceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHH
Confidence            987654322111            112345678888765 456999999999999999999996554 566777776655


Q ss_pred             hccCcCCcccccc---------------ccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVD---------------PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d---------------~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      +....+...++.+               +.. ...-..+....++++..++..||.+|+|+.|++++=
T Consensus       216 ~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~-~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~  282 (318)
T KOG0659|consen  216 RALGTPTPDQWPEMTSLPDYVKIQQFPKPPL-NNLFPAASSDALDLLSKMLTYNPKKRITASQALKHP  282 (318)
T ss_pred             HHcCCCCcccCccccccccHHHHhcCCCCcc-ccccccccHHHHHHHHhhhccCchhcccHHHHhcch
Confidence            5433322222111               111 112223445579999999999999999999999764

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-41  Score=346.15  Aligned_cols=259  Identities=22%  Similarity=0.317  Sum_probs=201.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++...+.||+|+||.||++.. ++|+..|||.+...+....+.+.+|+.+|.+++|||||+++|......      ...
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~------~~~   90 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRE------NDE   90 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCcccccc------Cee
Confidence            3466678899999999999995 459999999998654333677899999999999999999999754422      136


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCcEEEeccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRIAKLSDYGIS  597 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla  597 (747)
                      +++.|||+++|+|.+++.+.+.  .|+...+..+..||++||+|||+   ++||||||||+|||++. ++.+||+|||++
T Consensus        91 ~~i~mEy~~~GsL~~~~~~~g~--~l~E~~v~~ytr~iL~GL~ylHs---~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a  165 (313)
T KOG0198|consen   91 YNIFMEYAPGGSLSDLIKRYGG--KLPEPLVRRYTRQILEGLAYLHS---KGIVHCDIKPANILLDPSNGDVKLADFGLA  165 (313)
T ss_pred             eEeeeeccCCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHh---CCEeccCcccceEEEeCCCCeEEeccCccc
Confidence            8999999999999999987532  69999999999999999999998   89999999999999999 799999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC-CCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR-TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      +.......         ..-....+.+++.||+||++..+. ...++|||||||++.||+||+.||... .....++...
T Consensus       166 ~~~~~~~~---------~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~~~~~~~~~i  235 (313)
T KOG0198|consen  166 KKLESKGT---------KSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF-FEEAEALLLI  235 (313)
T ss_pred             cccccccc---------cccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh-cchHHHHHHH
Confidence            76653110         001112246778999999998633 335999999999999999999999752 1112222222


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      +....     -|.+    +...+.+..+++.+|+..||++|||+.+++..--
T Consensus       236 g~~~~-----~P~i----p~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf  278 (313)
T KOG0198|consen  236 GREDS-----LPEI----PDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPF  278 (313)
T ss_pred             hccCC-----CCCC----CcccCHHHHHHHHHHhhcCcccCcCHHHHhhChh
Confidence            22221     1223    2334445889999999999999999999997654

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-41  Score=361.42  Aligned_cols=260  Identities=20%  Similarity=0.312  Sum_probs=204.2

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC--C--cE-EEEEEeec---cchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN--G--TY-VAIRSLTF---LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~--g--~~-vAvK~l~~---~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      ++-...++||+|+||+||+|++..  +  .. ||||..+.   .......+|.+|.++|++++|||||++||++....  
T Consensus       157 ~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~--  234 (474)
T KOG0194|consen  157 SDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEE--  234 (474)
T ss_pred             cCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC--
Confidence            344455889999999999998532  3  23 89999884   34667789999999999999999999999998743  


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                            .+++|||+|+||+|.++|++.  ...++..+++.++.++|+||+|||+   .++|||||.++|||++.++.+||
T Consensus       235 ------Pl~ivmEl~~gGsL~~~L~k~--~~~v~~~ek~~~~~~AA~Gl~YLh~---k~~IHRDIAARNcL~~~~~~vKI  303 (474)
T KOG0194|consen  235 ------PLMLVMELCNGGSLDDYLKKN--KKSLPTLEKLRFCYDAARGLEYLHS---KNCIHRDIAARNCLYSKKGVVKI  303 (474)
T ss_pred             ------ccEEEEEecCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHhHHHHHHH---CCCcchhHhHHHheecCCCeEEe
Confidence                  789999999999999999975  3369999999999999999999999   88899999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLL  670 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~  670 (747)
                      +|||+++............        .    -...|.|||.+....|+.++|||||||++||+++ |..|+.......+
T Consensus       304 SDFGLs~~~~~~~~~~~~~--------k----lPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v  371 (474)
T KOG0194|consen  304 SDFGLSRAGSQYVMKKFLK--------K----LPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEV  371 (474)
T ss_pred             CccccccCCcceeeccccc--------c----CcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHH
Confidence            9999986543111100000        0    1125678999999999999999999999999999 6778876554433


Q ss_pred             HHHH-hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 044236          671 NEMA-SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQAT  736 (747)
Q Consensus       671 ~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~  736 (747)
                      .... .-..            +...+...+..+..++.+||..+|++||+|.+|.+.++.+......
T Consensus       372 ~~kI~~~~~------------r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~~  426 (474)
T KOG0194|consen  372 KAKIVKNGY------------RMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKEA  426 (474)
T ss_pred             HHHHHhcCc------------cCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhcccc
Confidence            3322 2111            1111223344578888999999999999999999999988775543

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-42  Score=355.56  Aligned_cols=256  Identities=20%  Similarity=0.313  Sum_probs=209.3

Q ss_pred             CCCccccccCCCCeeEEEEEeCC-CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      +....++||-|.||.||.|.|+. .-.||||.++. +....++|..|..+|+.++|||+|+|+|+|...        ..+
T Consensus       268 dItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKE-DtMeveEFLkEAAvMKeikHpNLVqLLGVCT~E--------pPF  338 (1157)
T KOG4278|consen  268 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHE--------PPF  338 (1157)
T ss_pred             heeeeeccCCCcccceeeeeeeccceeeehhhhhh-cchhHHHHHHHHHHHHhhcCccHHHHhhhhccC--------CCe
Confidence            34456789999999999999754 67899999984 445678999999999999999999999999873        378


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      |||.|||.+|+|.+||++. .+..++--..+.++.||+.||+||..   +++|||||.++|+|+.++-.+||+|||++|+
T Consensus       339 YIiTEfM~yGNLLdYLRec-nr~ev~avvLlyMAtQIsSaMeYLEk---knFIHRDLAARNCLVgEnhiVKvADFGLsRl  414 (1157)
T KOG4278|consen  339 YIITEFMCYGNLLDYLREC-NRSEVPAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHIVKVADFGLSRL  414 (1157)
T ss_pred             EEEEecccCccHHHHHHHh-chhhcchhHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhccccccceEEeeccchhhh
Confidence            9999999999999999874 34456666778999999999999998   8899999999999999999999999999999


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      |..+..+...+.       ..    ...|.|||.+.+..++.|+|||+|||+|||+.| |..|+..-+..++....... 
T Consensus       415 MtgDTYTAHAGA-------KF----PIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkg-  482 (1157)
T KOG4278|consen  415 MTGDTYTAHAGA-------KF----PIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKG-  482 (1157)
T ss_pred             hcCCceecccCc-------cC----cccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhcc-
Confidence            876544332221       11    124667888889999999999999999999998 68888776655554443322 


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                                 ++.+-++.|+..+++||.+||+++|.+||+|.||-+.++.+-+
T Consensus       483 -----------yRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~  525 (1157)
T KOG4278|consen  483 -----------YRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFS  525 (1157)
T ss_pred             -----------ccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhc
Confidence                       2223344555569999999999999999999999999986644

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-41  Score=382.79  Aligned_cols=258  Identities=28%  Similarity=0.470  Sum_probs=206.2

Q ss_pred             CCCccccccCCCCeeEEEEEeCC--Cc----EEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLEN--GT----YVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~--g~----~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      +.+..+.||+|.||.||.|.+.+  |.    .||||.++.. +.++..+|.+|..+|++++|||||+++|+|.+.+    
T Consensus       693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~----  768 (1025)
T KOG1095|consen  693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSG----  768 (1025)
T ss_pred             heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCC----
Confidence            34456789999999999998643  43    4899999754 5677889999999999999999999999999844    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcE
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCP----ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIA  589 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~  589 (747)
                          ..+|++|||++|||..+|++.++    ...|+..+.+.++.|||+|+.||++   +++|||||.++|+||+....+
T Consensus       769 ----~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~---~~fvHRDLAaRNCLL~~~r~V  841 (1025)
T KOG1095|consen  769 ----PPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLES---KHFVHRDLAARNCLLDERRVV  841 (1025)
T ss_pred             ----CcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHh---CCCcCcchhhhheeecccCcE
Confidence                67999999999999999987532    3468899999999999999999999   899999999999999999999


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF  668 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~  668 (747)
                      ||+|||+||.+...+.+...+.   +   .+    ...||+||.+..+.|+.|+|||||||++||++| |..||+.....
T Consensus       842 KIaDFGlArDiy~~~yyr~~~~---a---~l----PvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~  911 (1025)
T KOG1095|consen  842 KIADFGLARDIYDKDYYRKHGE---A---ML----PVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNF  911 (1025)
T ss_pred             EEcccchhHhhhhchheeccCc---c---cc----ceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchH
Confidence            9999999996554443332221   0   11    125788899999999999999999999999999 58888765544


Q ss_pred             hHHH-HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          669 LLNE-MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       669 ~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      .+.. +..    ++  ++ ++      |..+...+.++|.+||+.+|++||+|.+|++.++.+..
T Consensus       912 ~v~~~~~~----gg--RL-~~------P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~  963 (1025)
T KOG1095|consen  912 EVLLDVLE----GG--RL-DP------PSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISN  963 (1025)
T ss_pred             HHHHHHHh----CC--cc-CC------CCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhh
Confidence            3332 222    11  11 22      22334448899999999999999999999998876654

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-41  Score=350.14  Aligned_cols=249  Identities=19%  Similarity=0.327  Sum_probs=206.1

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .|.....||+|+.|.||.|+ ..+++.||||++...+....+-+.+|+.+|+..+|+|||.++..|...        +++
T Consensus       274 ~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~--------deL  345 (550)
T KOG0578|consen  274 KYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVG--------DEL  345 (550)
T ss_pred             hhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhccc--------cee
Confidence            45666789999999999998 677999999999987777777889999999999999999999988763        489


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      |+|||||++|+|.+.+...    .+++.++..|+.++++||+|||.   .+|+|||||++|||++.+|.+||+|||++..
T Consensus       346 WVVMEym~ggsLTDvVt~~----~~~E~qIA~Icre~l~aL~fLH~---~gIiHrDIKSDnILL~~~g~vKltDFGFcaq  418 (550)
T KOG0578|consen  346 WVVMEYMEGGSLTDVVTKT----RMTEGQIAAICREILQGLKFLHA---RGIIHRDIKSDNILLTMDGSVKLTDFGFCAQ  418 (550)
T ss_pred             EEEEeecCCCchhhhhhcc----cccHHHHHHHHHHHHHHHHHHHh---cceeeeccccceeEeccCCcEEEeeeeeeec
Confidence            9999999999999998753    48999999999999999999999   8999999999999999999999999999866


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      +.....-+            ..+.|+++|||||+.....|++|+||||||++++||+-|.+||-.+.....-+.+...  
T Consensus       419 i~~~~~KR------------~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~n--  484 (550)
T KOG0578|consen  419 ISEEQSKR------------STMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATN--  484 (550)
T ss_pred             cccccCcc------------ccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhc--
Confidence            54332211            1257889999999999999999999999999999999999998654433222222211  


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                       +..++-       .++..+..+.+++.+|++.||++||++.|++++
T Consensus       485 -g~P~lk-------~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  485 -GTPKLK-------NPEKLSPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             -CCCCcC-------CccccCHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence             111111       134455669999999999999999999999863

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=4.3e-40  Score=343.85  Aligned_cols=252  Identities=19%  Similarity=0.280  Sum_probs=197.1

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhc---HHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~---~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      ...||+|++|.||+|++ +|+.||||+++......   .+.+.+|+.+|++++|||||+++|++.+..    ......++
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~----~~~~~~~l   99 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIV----DDLPRLSL   99 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecc----cCCCceEE
Confidence            46799999999999998 68899999997543322   467889999999999999999999987611    11346899


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      ||||+++|+|.+++...   ..++|.....++.|++.||.|||+.  .+++||||||+|||++.++.+||+|||+++.+.
T Consensus       100 v~Ey~~~g~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~  174 (283)
T PHA02988        100 ILEYCTRGYLREVLDKE---KDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILS  174 (283)
T ss_pred             EEEeCCCCcHHHHHhhC---CCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhc
Confidence            99999999999999763   4689999999999999999999973  367899999999999999999999999987543


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCc
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      ....               ...++..|+|||.+..  ..++.++|||||||++|||++|+.||.......+.......  
T Consensus       175 ~~~~---------------~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~--  237 (283)
T PHA02988        175 SPPF---------------KNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINK--  237 (283)
T ss_pred             cccc---------------cccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhc--
Confidence            2111               0123456788888765  67899999999999999999999999765433222211101  


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ..     .+.....+    ...+.+++.+||+.||++|||+.|+++.|++...
T Consensus       238 ~~-----~~~~~~~~----~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~  281 (283)
T PHA02988        238 NN-----SLKLPLDC----PLEIKCIVEACTSHDSIKRPNIKEILYNLSLYKF  281 (283)
T ss_pred             CC-----CCCCCCcC----cHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHh
Confidence            00     11111123    3348899999999999999999999999998754

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=2.2e-40  Score=355.68  Aligned_cols=262  Identities=20%  Similarity=0.275  Sum_probs=199.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||.||+|..      .+++.||||+++... ....+.+.+|+.++.++ +|||||+++|+|...  
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~--   83 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKP--   83 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCC--
Confidence            46788999999999999999973      235789999987432 23346788999999999 899999999988653  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCC--------------------------------------------------
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------------------------------------------------  540 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~--------------------------------------------------  540 (747)
                           ....++||||+++|+|.+++.....                                                  
T Consensus        84 -----~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T cd05102          84 -----NGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTN  158 (338)
T ss_pred             -----CCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccc
Confidence                 2368999999999999988864210                                                  


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCC
Q 044236          541 ---------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE  611 (747)
Q Consensus       541 ---------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~  611 (747)
                               ...+++.+...++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++...........+.
T Consensus       159 ~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~  235 (338)
T cd05102         159 PPQETDDLWKSPLTMEDLICYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGS  235 (338)
T ss_pred             cchhccccccCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccC
Confidence                     1348888999999999999999999   8999999999999999999999999999976533221111100


Q ss_pred             CCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh-hHHHHHhccCcCCcccccccc
Q 044236          612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPV  689 (747)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~  689 (747)
                                ..++..|+|||.+....++.++|||||||++|||++ |..||...... .......   ....     +.
T Consensus       236 ----------~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~---~~~~-----~~  297 (338)
T cd05102         236 ----------ARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLK---DGTR-----MR  297 (338)
T ss_pred             ----------CCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHh---cCCC-----CC
Confidence                      112346889998888889999999999999999997 88888653321 1111111   1100     11


Q ss_pred             ccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          690 VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       690 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ....+    ...+.+++.+||+.||++|||+.|+++.|+.+.+
T Consensus       298 ~~~~~----~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         298 APENA----TPEIYRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             CCCCC----CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            11122    3348899999999999999999999999997654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=6.4e-41  Score=346.95  Aligned_cols=247  Identities=25%  Similarity=0.341  Sum_probs=207.3

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|.+.+.||+|+||.||||+ ..+.+.||+|.+.+..  +.+.+.+.+|++++++++|||||.++++|...        
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~--------   73 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETS--------   73 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhccc--------
Confidence            578888999999999999998 4568999999997654  34577899999999999999999999999763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      .++++|.||+.+ +|+.+|..   .+.+++..+..|+.|++.||.|||+   .+|+|||+||+|||++..+.+|+||||+
T Consensus        74 ~~~~vVte~a~g-~L~~il~~---d~~lpEe~v~~~a~~LVsaL~yLhs---~rilhrd~kPqniLl~~~~~~KlcdFg~  146 (808)
T KOG0597|consen   74 AHLWVVTEYAVG-DLFTILEQ---DGKLPEEQVRAIAYDLVSALYYLHS---NRILHRDMKPQNILLEKGGTLKLCDFGL  146 (808)
T ss_pred             ceEEEEehhhhh-hHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHh---cCcccccCCcceeeecCCCceeechhhh
Confidence            489999999977 99999986   4569999999999999999999999   8899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ||.+.......            ..+.|++.|||||+..++.|+..+|.||+|||+||+++|++||.......+-+.+. 
T Consensus       147 Ar~m~~~t~vl------------tsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~-  213 (808)
T KOG0597|consen  147 ARAMSTNTSVL------------TSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSIL-  213 (808)
T ss_pred             hhhcccCceee------------eeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-
Confidence            99876533221            12567889999999999999999999999999999999999997554433322221 


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                               -||.   .++......+..++...+..||.+|.|..+++.+
T Consensus       214 ---------~d~v---~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~H  251 (808)
T KOG0597|consen  214 ---------KDPV---KPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGH  251 (808)
T ss_pred             ---------cCCC---CCcccccHHHHHHHHHHhhcChhhcccHHHHhcC
Confidence                     1221   1233555668899999999999999999998854

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-40  Score=334.85  Aligned_cols=264  Identities=19%  Similarity=0.302  Sum_probs=207.5

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|+..+.||.|..++||+|+ .+.++.||||++...+. .+...+.+|+..|+.++|||||+++..|+..        
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~--------   96 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVD--------   96 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEec--------
Confidence            3578899999999999999999 67789999999986553 3358899999999999999999999988873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ..+|+||.||.+|++.++++..-+ ..+++..+..|.+++++||.|||+   .+.||||||+.|||||.+|.+||+|||.
T Consensus        97 ~~LWvVmpfMa~GS~ldIik~~~~-~Gl~E~~Ia~iLre~LkaL~YLH~---~G~IHRdvKAgnILi~~dG~VkLadFgv  172 (516)
T KOG0582|consen   97 SELWVVMPFMAGGSLLDIIKTYYP-DGLEEASIATILREVLKALDYLHQ---NGHIHRDVKAGNILIDSDGTVKLADFGV  172 (516)
T ss_pred             ceeEEeehhhcCCcHHHHHHHHcc-ccccHHHHHHHHHHHHHHHHHHHh---cCceecccccccEEEcCCCcEEEcCcee
Confidence            489999999999999999976433 238889999999999999999999   7889999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeee--ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD--IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      +..+.+... +       ..+.+-.+.++++|||||++.  ...|+.|+||||||+...||++|..||.+.+...+-.+.
T Consensus       173 sa~l~~~G~-R-------~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~t  244 (516)
T KOG0582|consen  173 SASLFDSGD-R-------QVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLT  244 (516)
T ss_pred             eeeecccCc-e-------eeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHH
Confidence            876655331 1       111123467889999999954  346999999999999999999999999876654432221


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      -.. ......  -.....+........+.+++..|++.||.+|||+.++++
T Consensus       245 Lqn-~pp~~~--t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  245 LQN-DPPTLL--TSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             hcC-CCCCcc--cccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            111 111000  001111112233446889999999999999999999985

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-40  Score=350.71  Aligned_cols=249  Identities=25%  Similarity=0.340  Sum_probs=202.0

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc----ch-hcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL----KK-YSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGS  510 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~----~~-~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~  510 (747)
                      ..+.|...+.||+|+||+||.|+ ..+|+.||||.++..    .. ...+.+.+|+.++++++ ||||++++.++...  
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~--   92 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATP--   92 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecC--
Confidence            35678899999999999999998 567899999977643    11 23456778999999999 99999999999774  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-CcE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIA  589 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~  589 (747)
                            ..+++||||+.+|+|++++..   .+.+.+.....++.|++.|++|+|+   .+|+||||||+|||+|.+ +++
T Consensus        93 ------~~~~ivmEy~~gGdL~~~i~~---~g~l~E~~ar~~F~Qlisav~y~H~---~gi~HRDLK~ENilld~~~~~~  160 (370)
T KOG0583|consen   93 ------TKIYIVMEYCSGGDLFDYIVN---KGRLKEDEARKYFRQLISAVAYCHS---RGIVHRDLKPENILLDGNEGNL  160 (370)
T ss_pred             ------CeEEEEEEecCCccHHHHHHH---cCCCChHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEecCCCCCE
Confidence                  369999999999999999986   3568889999999999999999999   899999999999999999 999


Q ss_pred             EEeccccccccc-ccchhcccCCCCCcccccceeeecCCcceeeeeeccC-CC-cCCceeehhHHHHHHhhCCCCCCCCh
Q 044236          590 KLSDYGISIIME-EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR-TK-LEDDVYNFGFILLESLVGPIVTGKGE  666 (747)
Q Consensus       590 kl~DFGla~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~s-~k~DVwSfGvvl~Elltg~~p~~~~~  666 (747)
                      ||+|||++.... .....             ...||+++|+|||++.... |+ .++||||+||+||.|++|+.||++..
T Consensus       161 Kl~DFG~s~~~~~~~~~l-------------~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~  227 (370)
T KOG0583|consen  161 KLSDFGLSAISPGEDGLL-------------KTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN  227 (370)
T ss_pred             EEeccccccccCCCCCcc-------------cCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc
Confidence            999999998763 21111             1258899999999999877 86 78999999999999999999998754


Q ss_pred             hhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ...+.......      +.   .++....   +..+..++.+|+..||.+|+|+.+|+.
T Consensus       228 ~~~l~~ki~~~------~~---~~p~~~~---S~~~~~Li~~mL~~~P~~R~t~~~i~~  274 (370)
T KOG0583|consen  228 VPNLYRKIRKG------EF---KIPSYLL---SPEARSLIEKMLVPDPSTRITLLEILE  274 (370)
T ss_pred             HHHHHHHHhcC------Cc---cCCCCcC---CHHHHHHHHHHcCCCcccCCCHHHHhh
Confidence            33322221111      00   0111110   444889999999999999999999993

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-40  Score=345.55  Aligned_cols=264  Identities=22%  Similarity=0.296  Sum_probs=205.3

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +...+.+.||+|.||+|..+....+..||||+++.... ....+|..|+++|.+++|||||+++|+|...        +.
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~D--------eP  609 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQD--------DP  609 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecC--------Cc
Confidence            44567789999999999999998889999999986543 3458999999999999999999999999984        37


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      +++|+|||++|+|.+++..+.... +.-....+|+.|||.||+||.+   .++||||+.++|||+|.++++||+|||++|
T Consensus       610 icmI~EYmEnGDLnqFl~aheapt-~~t~~~vsi~tqiasgmaYLes---~nfVHrd~a~rNcLv~~e~~iKiadfgmsR  685 (807)
T KOG1094|consen  610 LCMITEYMENGDLNQFLSAHELPT-AETAPGVSICTQIASGMAYLES---LNFVHRDLATRNCLVDGEFTIKIADFGMSR  685 (807)
T ss_pred             hHHHHHHHhcCcHHHHHHhccCcc-cccchhHHHHHHHHHHHHHHHh---hchhhccccccceeecCcccEEecCccccc
Confidence            899999999999999998763221 3445567899999999999999   889999999999999999999999999998


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC--CCCCCCChhhhHHH-HHh
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFLLNE-MAS  675 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg--~~p~~~~~~~~~~~-~~~  675 (747)
                      -+.....+...+..          .-...|||+|.+..+++|.++|||+|||++||+++-  ..|+..-..+++.+ ...
T Consensus       686 ~lysg~yy~vqgr~----------vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~  755 (807)
T KOG1094|consen  686 NLYSGDYYRVQGRA----------VLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGE  755 (807)
T ss_pred             ccccCCceeeecce----------eeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhh
Confidence            76555444332211          111246777888889999999999999999999874  77887544333322 222


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      +...++...+ -+ .    |..+...+++++.+||..|-++||+|+++...|++.+
T Consensus       756 ~~~~~~~~~~-l~-~----P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~~  805 (807)
T KOG1094|consen  756 FFRDQGRQVV-LS-R----PPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQEDA  805 (807)
T ss_pred             hcCCCCccee-cc-C----CCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHhc
Confidence            2222222111 11 1    2333444889999999999999999999999987653

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.1e-40  Score=324.00  Aligned_cols=265  Identities=18%  Similarity=0.259  Sum_probs=205.5

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchh--cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKY--SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~--~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|+.++.|++|.||.||+|+ .++++.||+|+++..+..  -.-.-.+||.+|.+++|||||.+..+...+.     
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~-----  148 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSN-----  148 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccc-----
Confidence            45678889999999999999999 567999999999875432  1224478999999999999999998887643     


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       .+.+|||||||+. ||..+++.-  ..++...+++.+..|+++|++|||.   .-|+|||||++|+|+.+.|.+||+||
T Consensus       149 -~d~iy~VMe~~Eh-DLksl~d~m--~q~F~~~evK~L~~QlL~glk~lH~---~wilHRDLK~SNLLm~~~G~lKiaDF  221 (419)
T KOG0663|consen  149 -MDKIYIVMEYVEH-DLKSLMETM--KQPFLPGEVKTLMLQLLRGLKHLHD---NWILHRDLKTSNLLLSHKGILKIADF  221 (419)
T ss_pred             -cceeeeeHHHHHh-hHHHHHHhc--cCCCchHHHHHHHHHHHHHHHHHhh---ceeEecccchhheeeccCCcEEeccc
Confidence             5679999999988 999999864  3578899999999999999999999   77899999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCC-CCCChhhhHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIV-TGKGEAFLLNE  672 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p-~~~~~~~~~~~  672 (747)
                      |+||...+...            .+....-+..|.|||++.+ ..|++..|+||+|||+.|++++++- .+.++.++++.
T Consensus       222 GLAR~ygsp~k------------~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~  289 (419)
T KOG0663|consen  222 GLAREYGSPLK------------PYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDK  289 (419)
T ss_pred             chhhhhcCCcc------------cCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHH
Confidence            99987654321            1122334556788887765 4599999999999999999999654 45677777777


Q ss_pred             HHhccCcCCccccc---cc--------------cccCCCCHH-HHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIV---DP--------------VVLTTCSQE-SLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~---d~--------------~~~~~~~~~-~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +......+....+.   +.              .+...+... ..+.-++|+...+..||.+|.|+.|.++.
T Consensus       290 If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  290 IFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             HHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence            66544332111110   00              011112222 34667899999999999999999999864

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.6e-40  Score=347.03  Aligned_cols=249  Identities=19%  Similarity=0.271  Sum_probs=206.5

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      +-|+..+.||.|+-|.|-.|+ ..+|+.+|||++....   ......+.+||-+|+-+.||||+++|++++..       
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~-------   84 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENK-------   84 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccC-------
Confidence            456778889999999999999 6789999999997542   23345678999999999999999999998773       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       .++|+|.||+++|.|++++..   .++++..+..+++.||+.|+.|+|.   .+|+||||||+|+|||..+++||+|||
T Consensus        85 -~~lylvlEyv~gGELFdylv~---kG~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~nIKIADFG  157 (786)
T KOG0588|consen   85 -QHLYLVLEYVPGGELFDYLVR---KGPLPEREAAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNNIKIADFG  157 (786)
T ss_pred             -ceEEEEEEecCCchhHHHHHh---hCCCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccCEeeeccc
Confidence             489999999999999999986   4569999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCC-cCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTK-LEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s-~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      +|.+.....-.             ...||.+-|.+||++.+..|. .++||||+|||||.|+||+.||+++....+..-.
T Consensus       158 MAsLe~~gklL-------------eTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV  224 (786)
T KOG0588|consen  158 MASLEVPGKLL-------------ETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKV  224 (786)
T ss_pred             eeecccCCccc-------------cccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHH
Confidence            99654332221             124788899999999999885 8999999999999999999999977655443333


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      +.+..    +         .|...+.++.+|+.+++..||++|.|++||+++--
T Consensus       225 ~~G~f----~---------MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~  265 (786)
T KOG0588|consen  225 QRGVF----E---------MPSNISSEAQDLLRRMLDVDPSTRITTEEILKHPF  265 (786)
T ss_pred             HcCcc----c---------CCCcCCHHHHHHHHHHhccCccccccHHHHhhCch
Confidence            32211    1         12233344899999999999999999999998653

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.6e-40  Score=329.60  Aligned_cols=262  Identities=21%  Similarity=0.315  Sum_probs=196.5

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .|...+++|.|+||.||+|. ..+++.||||+....++..    .+|+++|++++|||||+|.-+|......   ..-..
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k----nrEl~im~~l~HpNIV~L~~~f~~~~~~---d~~~l   97 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK----NRELQIMRKLDHPNIVRLLYFFSSSTES---DEVYL   97 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC----cHHHHHHHhcCCcCeeeEEEEEEecCCC---chhHH
Confidence            35567899999999999999 4568999999987544322    4699999999999999999888764421   12366


Q ss_pred             EEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-CcEEEeccccc
Q 044236          520 FLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIAKLSDYGIS  597 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla  597 (747)
                      .+||||||. +|.++++.. ..+..++...++-+..|+.+||+|||+   .+|+||||||+|+|+|.+ |.+||||||.|
T Consensus        98 nlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~---~~IcHRDIKPqNlLvD~~tg~LKicDFGSA  173 (364)
T KOG0658|consen   98 NLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHS---HGICHRDIKPQNLLVDPDTGVLKICDFGSA  173 (364)
T ss_pred             HHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHh---cCcccCCCChheEEEcCCCCeEEeccCCcc
Confidence            789999998 999988742 123457777788899999999999999   899999999999999976 99999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCC-CCChhhhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVT-GKGEAFLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~-~~~~~~~~~~~~~  675 (747)
                      +.+...+..          ..|  +| +..|.|||++. ...|+.+.||||.|||+.||+-|++-| +++..+++.++..
T Consensus       174 K~L~~~epn----------iSY--ic-SRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik  240 (364)
T KOG0658|consen  174 KVLVKGEPN----------ISY--IC-SRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIK  240 (364)
T ss_pred             eeeccCCCc----------eeE--EE-eccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHH
Confidence            887654321          111  23 45788888775 457999999999999999999996655 4555666666655


Q ss_pred             ccCcCCcccc----------ccccccCC-----CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQDGRRRI----------VDPVVLTT-----CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~~~~~~----------~d~~~~~~-----~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....+...++          ..|.+...     +......+..+++.+++..+|.+|.++.|++.+
T Consensus       241 ~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h  306 (364)
T KOG0658|consen  241 VLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAH  306 (364)
T ss_pred             HhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcc
Confidence            4333221111          11111111     222334558899999999999999999999853

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=325.06  Aligned_cols=247  Identities=22%  Similarity=0.359  Sum_probs=204.2

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .+|++.+.||+|.||+|-+|. ...|+.||||.++..+   +++.-.+++||+||+.|+||||+.+|.+|...       
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENk-------  125 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENK-------  125 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCC-------
Confidence            357777889999999999998 5789999999997543   55666789999999999999999999999764       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +.+.|||||..+|.|++|+..   .+.|++.+...+++||..|+.|+|.   .+++|||||.+|||+|.++++||+|||
T Consensus       126 -dKIvivMEYaS~GeLYDYiSe---r~~LsErEaRhfFRQIvSAVhYCHk---nrVvHRDLKLENILLD~N~NiKIADFG  198 (668)
T KOG0611|consen  126 -DKIVIVMEYASGGELYDYISE---RGSLSEREARHFFRQIVSAVHYCHK---NRVVHRDLKLENILLDQNNNIKIADFG  198 (668)
T ss_pred             -ceEEEEEEecCCccHHHHHHH---hccccHHHHHHHHHHHHHHHHHHhh---ccceecccchhheeecCCCCeeeeccc
Confidence             489999999999999999987   3569999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCC-cCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTK-LEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s-~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      ++-...+..-..             .+||.+.|..||+..+..|. +.+|.||+||+||.|+.|..||+..+...+-..+
T Consensus       199 LSNly~~~kfLq-------------TFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQI  265 (668)
T KOG0611|consen  199 LSNLYADKKFLQ-------------TFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQI  265 (668)
T ss_pred             hhhhhccccHHH-------------HhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHh
Confidence            997655433221             26888899999999988874 8899999999999999999999876644332222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      +.+.      ..+|..        +.....|+..++..+|++|.|+.+|...-
T Consensus       266 s~Ga------YrEP~~--------PSdA~gLIRwmLmVNP~RRATieDiAsHW  304 (668)
T KOG0611|consen  266 SRGA------YREPET--------PSDASGLIRWMLMVNPERRATIEDIASHW  304 (668)
T ss_pred             hccc------ccCCCC--------CchHHHHHHHHHhcCcccchhHHHHhhhh
Confidence            2111      112221        12256788999999999999999998643

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2.7e-39  Score=335.90  Aligned_cols=262  Identities=20%  Similarity=0.328  Sum_probs=203.3

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ..++|+.+.+||+|+||+||.|+ ..+|..+|+|+++..   +..+++.++.|-.+|...++|+||+||..|.+.     
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~-----  213 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDK-----  213 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCC-----
Confidence            56789999999999999999998 567999999999854   345677889999999999999999999888763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ..+||||||++|||+..+|..   ...|+......++.+++.|+.-+|+   .++|||||||+|+|||..|++||+|
T Consensus       214 ---~~LYLiMEylPGGD~mTLL~~---~~~L~e~~arfYiaE~vlAI~~iH~---~gyIHRDIKPdNlLiD~~GHiKLSD  284 (550)
T KOG0605|consen  214 ---EYLYLIMEYLPGGDMMTLLMR---KDTLTEDWARFYIAETVLAIESIHQ---LGYIHRDIKPDNLLIDAKGHIKLSD  284 (550)
T ss_pred             ---CeeEEEEEecCCccHHHHHHh---cCcCchHHHHHHHHHHHHHHHHHHH---cCcccccCChhheeecCCCCEeecc
Confidence               489999999999999999986   4569999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhc-------------c--cCCCCC---------------------cccccceeeecCCcceeeeeecc
Q 044236          594 YGISIIMEEHEKLE-------------A--KGEGPK---------------------ARYGFLFICRTSAENVVIVVDIQ  637 (747)
Q Consensus       594 FGla~~~~~~~~~~-------------~--~~~~~~---------------------~~~~~~~~~~~~~~~~~e~~~~~  637 (747)
                      |||+.-........             .  ....+.                     ..+.+ .+.|++.|+|||++.+.
T Consensus       285 FGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~-StVGTPDYiAPEVll~k  363 (550)
T KOG0605|consen  285 FGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAY-STVGTPDYIAPEVLLGK  363 (550)
T ss_pred             ccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhh-cccCCccccchHHHhcC
Confidence            99995433211100             0  000010                     01111 36889999999999999


Q ss_pred             CCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCC
Q 044236          638 RTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS  716 (747)
Q Consensus       638 ~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~  716 (747)
                      .|+..+|+||+|||+|||+.|-+||..+... ....+..+...-   .  -|.     ......+..+|+.+|+. ||++
T Consensus       364 gY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l---~--fP~-----~~~~s~eA~DLI~rll~-d~~~  432 (550)
T KOG0605|consen  364 GYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETL---K--FPE-----EVDLSDEAKDLITRLLC-DPEN  432 (550)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhc---c--CCC-----cCcccHHHHHHHHHHhc-CHHH
Confidence            9999999999999999999998888755433 333332221110   0  111     01112458899999999 9999


Q ss_pred             CC---CHHHHHH
Q 044236          717 RP---SFEDVLW  725 (747)
Q Consensus       717 RP---s~~evl~  725 (747)
                      |-   .++||-+
T Consensus       433 RLG~~G~~EIK~  444 (550)
T KOG0605|consen  433 RLGSKGAEEIKK  444 (550)
T ss_pred             hcCcccHHHHhc
Confidence            96   4666643

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-39  Score=313.58  Aligned_cols=236  Identities=20%  Similarity=0.326  Sum_probs=195.4

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|+.++.||.|+||+|.+++ ..+|..+|+|+++..+   ....+...+|..+|+.+.||++|++++.|.+.      
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~------  116 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDN------  116 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccC------
Confidence            3578889999999999999999 4569999999998544   33456678899999999999999999998874      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ..++|||||+++|.|+.++++   .+.++...+..++.||+.||+|||+   ..|++|||||+|||||.+|.+||+||
T Consensus       117 --~~lymvmeyv~GGElFS~Lrk---~~rF~e~~arFYAAeivlAleylH~---~~iiYRDLKPENiLlD~~G~iKitDF  188 (355)
T KOG0616|consen  117 --SNLYMVMEYVPGGELFSYLRK---SGRFSEPHARFYAAEIVLALEYLHS---LDIIYRDLKPENLLLDQNGHIKITDF  188 (355)
T ss_pred             --CeEEEEEeccCCccHHHHHHh---cCCCCchhHHHHHHHHHHHHHHHHh---cCeeeccCChHHeeeccCCcEEEEec
Confidence              489999999999999999987   3569999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH-HH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN-EM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~-~~  673 (747)
                      |.|+.+....               ...||++.|.|||++....|..++|.|||||++|||+.|.+||.......+. .+
T Consensus       189 GFAK~v~~rT---------------~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI  253 (355)
T KOG0616|consen  189 GFAKRVSGRT---------------WTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKI  253 (355)
T ss_pred             cceEEecCcE---------------EEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHH
Confidence            9998765331               2378999999999999999999999999999999999998888765543322 22


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCC
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR  717 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R  717 (747)
                      .. +      ++       .+|.-....+.+|+...++.|-.+|
T Consensus       254 ~~-~------~v-------~fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  254 LE-G------KV-------KFPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             Hh-C------cc-------cCCcccCHHHHHHHHHHHhhhhHhh
Confidence            21 1      00       1122223337778888888888887

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=6.7e-39  Score=338.93  Aligned_cols=262  Identities=22%  Similarity=0.324  Sum_probs=194.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC-----------------CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCccee
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN-----------------GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSL  501 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~-----------------g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l  501 (747)
                      ++|.+.+.||+|+||.||+|..++                 +..||||.++... .....++.+|++++.+++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            468888999999999999997532                 3479999987532 3345678999999999999999999


Q ss_pred             eeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCC----------------CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 044236          502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC----------------PENVLKWSDRLAILIGVAKAVHFLHS  565 (747)
Q Consensus       502 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~----------------~~~~l~~~~~~~i~~~ia~gL~yLH~  565 (747)
                      ++++...        +..++||||+++|+|.+++....                ....++|.....++.|++.||.|||+
T Consensus        85 ~~~~~~~--------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~  156 (304)
T cd05096          85 LGVCVDE--------DPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS  156 (304)
T ss_pred             EEEEecC--------CceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999763        36899999999999998875421                11347889999999999999999999


Q ss_pred             CCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCce
Q 044236          566 SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDV  645 (747)
Q Consensus       566 ~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DV  645 (747)
                         .+|+||||||+|||++.++.+||+|||+++...........+          ....+..|++||.+....++.++||
T Consensus       157 ---~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~Dv  223 (304)
T cd05096         157 ---LNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQG----------RAVLPIRWMAWECILMGKFTTASDV  223 (304)
T ss_pred             ---CCccccCcchhheEEcCCccEEECCCccceecccCceeEecC----------cCCCCccccCHHHHhcCCCCchhhh
Confidence               789999999999999999999999999997553322111100          0112346788998888889999999


Q ss_pred             eehhHHHHHHhhC--CCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHH
Q 044236          646 YNFGFILLESLVG--PIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED  722 (747)
Q Consensus       646 wSfGvvl~Elltg--~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~e  722 (747)
                      |||||++|||+++  ..|+...... .............. .. .......++    ..+.+++.+||+.||++|||+.|
T Consensus       224 ~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~----~~~~~li~~cl~~~p~~RPs~~~  297 (304)
T cd05096         224 WAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGR-QV-YLFRPPPCP----QGLYELMLQCWSRDCRERPSFSD  297 (304)
T ss_pred             HHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhccc-cc-cccCCCCCC----HHHHHHHHHHccCCchhCcCHHH
Confidence            9999999999974  5676543322 22222111111100 00 001112233    34889999999999999999999


Q ss_pred             HHHHHH
Q 044236          723 VLWNLQ  728 (747)
Q Consensus       723 vl~~L~  728 (747)
                      |.+.|+
T Consensus       298 i~~~l~  303 (304)
T cd05096         298 IHAFLT  303 (304)
T ss_pred             HHHHHh
Confidence            998875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=338.47  Aligned_cols=253  Identities=24%  Similarity=0.389  Sum_probs=203.9

Q ss_pred             CCccccccCCCCeeEEEEEeCC---C--cEEEEEEeec-cchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRLEN---G--TYVAIRSLTF-LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~~---g--~~vAvK~l~~-~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ....+.||+|.||.||+|.+.+   |  --||||.-+. ......+.|..|.-+|++++|||||+|+|+|.+.       
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~-------  463 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ-------  463 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeecc-------
Confidence            3455789999999999998532   3  3588998875 3455678899999999999999999999999873       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                        ..+||||.++.|.|..||+.+  ...|+......++.||+.||+|||+   ..+|||||..+|||+...--+|++|||
T Consensus       464 --P~WivmEL~~~GELr~yLq~n--k~sL~l~tL~ly~~Qi~talaYLeS---krfVHRDIAaRNiLVsSp~CVKLaDFG  536 (974)
T KOG4257|consen  464 --PMWIVMELAPLGELREYLQQN--KDSLPLRTLTLYCYQICTALAYLES---KRFVHRDIAARNILVSSPQCVKLADFG  536 (974)
T ss_pred             --ceeEEEecccchhHHHHHHhc--cccchHHHHHHHHHHHHHHHHHHHh---hchhhhhhhhhheeecCcceeeecccc
Confidence              689999999999999999875  5678999999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCCh-hhhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGE-AFLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~-~~~~~~~  673 (747)
                      ++|.+++...+....       +.+    .-.||+||-+..++++.++|||-|||.+||+++ |..||..-. .+.    
T Consensus       537 LSR~~ed~~yYkaS~-------~kL----PIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDV----  601 (974)
T KOG4257|consen  537 LSRYLEDDAYYKASR-------GKL----PIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDV----  601 (974)
T ss_pred             hhhhccccchhhccc-------ccc----ceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccce----
Confidence            999988765443321       111    125788999999999999999999999999987 777775322 111    


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      +.         .++..-+..+|+.++..+..|+.+||+.||.+||.+.|+...|..+.+
T Consensus       602 I~---------~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  602 IG---------HIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             EE---------EecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence            11         111111123344555558999999999999999999999998887765

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.9e-39  Score=302.81  Aligned_cols=249  Identities=20%  Similarity=0.302  Sum_probs=204.4

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|-||.||.|+ .+++-.||+|++-..   +.+..+++.+|+++-+.|+||||+++||||.+.      
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~------   94 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDS------   94 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheecc------
Confidence            4679999999999999999999 567889999998643   234457889999999999999999999999884      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...||++||.++|+++..|+.. ....++......++.|+|.|+.|+|.   +.||||||||+|+|++..+..||+||
T Consensus        95 --~riyLilEya~~gel~k~L~~~-~~~~f~e~~~a~Yi~q~A~Al~y~h~---k~VIhRdiKpenlLlg~~~~lkiAdf  168 (281)
T KOG0580|consen   95 --KRIYLILEYAPRGELYKDLQEG-RMKRFDEQRAATYIKQLANALLYCHL---KRVIHRDIKPENLLLGSAGELKIADF  168 (281)
T ss_pred             --ceeEEEEEecCCchHHHHHHhc-ccccccccchhHHHHHHHHHHHHhcc---CCcccCCCCHHHhccCCCCCeeccCC
Confidence              4899999999999999999853 23457788888999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~  673 (747)
                      |.+..-.....              ..+|++..|.+||...+...+.++|+|++||+.||++.|.+||.... .+...++
T Consensus       169 GwsV~~p~~kR--------------~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI  234 (281)
T KOG0580|consen  169 GWSVHAPSNKR--------------KTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRI  234 (281)
T ss_pred             CceeecCCCCc--------------eeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHH
Confidence            99855432111              13688999999999999999999999999999999999999997543 2223333


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ...       +..+|   ...+.    .+.+++.+|+..+|.+|.+..|++..=
T Consensus       235 ~k~-------~~~~p---~~is~----~a~dlI~~ll~~~p~~r~~l~~v~~hp  274 (281)
T KOG0580|consen  235 RKV-------DLKFP---STISG----GAADLISRLLVKNPIERLALTEVMDHP  274 (281)
T ss_pred             HHc-------cccCC---cccCh----hHHHHHHHHhccCccccccHHHHhhhH
Confidence            221       22222   22233    488999999999999999999998653

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.9e-38  Score=337.23  Aligned_cols=259  Identities=21%  Similarity=0.328  Sum_probs=201.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCc----EEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGT----YVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|+..+.||+|+||.||+|++ .+++    .||||.++... ....+++.+|+.+++.++||||++++|+|...     
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-----   81 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-----   81 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-----
Confidence            4688999999999999999985 3444    38999987432 33456788999999999999999999998752     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                          ..++|+||+++|+|.+++...  ...+++...+.++.||++||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus        82 ----~~~~v~e~~~~g~l~~~l~~~--~~~~~~~~~~~~~~qi~~~L~~LH~---~~iiH~dlkp~Nill~~~~~~kl~D  152 (316)
T cd05108          82 ----TVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEE---RRLVHRDLAARNVLVKTPQHVKITD  152 (316)
T ss_pred             ----CceeeeecCCCCCHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEecCCCcEEEcc
Confidence                468999999999999998764  3458899999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++.............          ...+..|++||.+....++.++|||||||++|||++ |+.|+.......+..
T Consensus       153 fG~a~~~~~~~~~~~~~~----------~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~  222 (316)
T cd05108         153 FGLAKLLGADEKEYHAEG----------GKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS  222 (316)
T ss_pred             ccccccccCCCcceeccC----------CccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence            999987643222111000          011235778888888889999999999999999998 899987654433333


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      +.....     ....   ...++    ..+.+++.+||..+|.+||++.+++..+..+.+..
T Consensus       223 ~~~~~~-----~~~~---~~~~~----~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~  272 (316)
T cd05108         223 ILEKGE-----RLPQ---PPICT----IDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP  272 (316)
T ss_pred             HHhCCC-----CCCC---CCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCC
Confidence            222111     0011   11222    34788999999999999999999999998876644

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=8.8e-39  Score=347.24  Aligned_cols=258  Identities=24%  Similarity=0.327  Sum_probs=196.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||.||+|+.      .++..||||+++... ....+.+.+|+.+++.+ +|||||+++|+|...  
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~--  111 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVG--  111 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccC--
Confidence            35688889999999999999963      236689999987432 33446788999999999 899999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCC--------------------------------------------------
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------------------------------------------------  540 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~--------------------------------------------------  540 (747)
                            ...++|||||++|+|.++++....                                                  
T Consensus       112 ------~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  185 (375)
T cd05104         112 ------GPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADK  185 (375)
T ss_pred             ------CcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccc
Confidence                  368999999999999988864210                                                  


Q ss_pred             ----------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          541 ----------------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       541 ----------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                                            ...++|..+..++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~  262 (375)
T cd05104         186 RRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLAS---KNCIHRDLAARNILLTHGRITKICDFGLAR  262 (375)
T ss_pred             ccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCchhhEEEECCCcEEEecCccce
Confidence                                  1247899999999999999999999   899999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh-hHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF-LLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~-~~~~~~~~  676 (747)
                      ...........+.          ...+..|++||.+....++.++|||||||++|||++ |..|+...... ........
T Consensus       263 ~~~~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~  332 (375)
T cd05104         263 DIRNDSNYVVKGN----------ARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKE  332 (375)
T ss_pred             eccCcccccccCC----------CCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHh
Confidence            6543221111100          011235788999888889999999999999999998 78887643221 11111111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      ..     ....+   .    ....++.+++.+||+.||++||||.||+++|++
T Consensus       333 ~~-----~~~~~---~----~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         333 GY-----RMLSP---E----CAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             Cc-----cCCCC---C----CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence            10     00011   1    112348899999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=2.2e-38  Score=328.16  Aligned_cols=255  Identities=18%  Similarity=0.245  Sum_probs=197.2

Q ss_pred             hCCCccccccCCCCeeEEEEEeC----CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|++.    .+..||+|.++... ......+.+|+.++++++||||++++|++...      
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------   78 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRG------   78 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecC------
Confidence            56888899999999999999752    36789999987542 23346788999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..++||||+++|+|.+++...  ...++|..++.++.|++.||+|||+   .+++||||||+||+++.++.+|++||
T Consensus        79 --~~~~lv~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~~i~~al~~lH~---~~iiH~dikp~nili~~~~~~~l~df  151 (266)
T cd05064          79 --NTMMIVTEYMSNGALDSFLRKH--EGQLVAGQLMGMLPGLASGMKYLSE---MGYVHKGLAAHKVLVNSDLVCKISGF  151 (266)
T ss_pred             --CCcEEEEEeCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeeccccHhhEEEcCCCcEEECCC
Confidence              4789999999999999998754  3468999999999999999999998   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |.+............           ...++..|++||.+....++.++|||||||++||+++ |+.||...........
T Consensus       152 g~~~~~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~  220 (266)
T cd05064         152 RRLQEDKSEAIYTTM-----------SGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKA  220 (266)
T ss_pred             cccccccccchhccc-----------CCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHH
Confidence            987543211110000           0112235788998888899999999999999999775 9888865433222221


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ....   .     .+.....+    ...+.+++.+||+.+|++||++.||.+.|+.+
T Consensus       221 ~~~~---~-----~~~~~~~~----~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         221 VEDG---F-----RLPAPRNC----PNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             HHCC---C-----CCCCCCCC----CHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            1111   0     01111223    33488899999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=3e-38  Score=325.23  Aligned_cols=250  Identities=21%  Similarity=0.363  Sum_probs=196.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||.||++++.++..+|+|.+... .....++.+|++++++++||||++++++|...        ...
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~~   74 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQ--------KPL   74 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHHHHCCCCCceeEEEEEccC--------CCE
Confidence            457788999999999999999888888999988633 23356788999999999999999999998763        368


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.++++..  ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||.++.
T Consensus        75 ~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~  149 (256)
T cd05114          75 YIVTEFMENGCLLNYLRQR--QGKLSKDMLLSMCQDVCEGMEYLER---NSFIHRDLAARNCLVSSTGVVKVSDFGMTRY  149 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhC--ccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcceEEEcCCCeEEECCCCCccc
Confidence            9999999999999998753  2358999999999999999999998   8899999999999999999999999999875


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhh-HHHHHhcc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFL-LNEMASFG  677 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~-~~~~~~~~  677 (747)
                      ..........           ...+...|++||......++.++|||||||++|||++ |+.|+....... ...+.. .
T Consensus       150 ~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~-~  217 (256)
T cd05114         150 VLDDEYTSSS-----------GAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISR-G  217 (256)
T ss_pred             cCCCceeccC-----------CCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHC-C
Confidence            4322111000           0012235788898888889999999999999999999 888887544322 222211 1


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .     ....+.       .....+.+++.+||+.+|.+||++.|+++.|
T Consensus       218 ~-----~~~~~~-------~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         218 F-----RLYRPK-------LASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             C-----CCCCCC-------CCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            0     011111       1123488999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-39  Score=330.89  Aligned_cols=247  Identities=22%  Similarity=0.325  Sum_probs=200.2

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .|...+.||+|.||.||||. ..+++.||+|++.... +.+.+++++|+.++.+++|+||.++||.+...        ..
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g--------~~   85 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKG--------TK   85 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeec--------cc
Confidence            46667889999999999998 5679999999998643 45678899999999999999999999999873        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      ++++||||.+|++.+.+..   ...+.+....-|.+++..|+.|||+   .+.+|||||+.|||+..+|.+|++|||++-
T Consensus        86 LwiiMey~~gGsv~~lL~~---~~~~~E~~i~~ilre~l~~l~ylH~---~~kiHrDIKaanil~s~~g~vkl~DfgVa~  159 (467)
T KOG0201|consen   86 LWIIMEYCGGGSVLDLLKS---GNILDEFEIAVILREVLKGLDYLHS---EKKIHRDIKAANILLSESGDVKLADFGVAG  159 (467)
T ss_pred             HHHHHHHhcCcchhhhhcc---CCCCccceeeeehHHHHHHhhhhhh---cceecccccccceeEeccCcEEEEecceee
Confidence            8999999999999999975   3345777777889999999999999   778999999999999999999999999996


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .+.......            -.+.+++.|||||++....|+.|+||||+|++.+||++|.+|+.+-...-+     ...
T Consensus       160 ql~~~~~rr------------~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrv-----lfl  222 (467)
T KOG0201|consen  160 QLTNTVKRR------------KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRV-----LFL  222 (467)
T ss_pred             eeechhhcc------------ccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceE-----EEe
Confidence            654332211            125788999999999988999999999999999999999999875433110     000


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                         +.+-..|.+..    .....+.+++..|++.||+.||++.++++
T Consensus       223 ---Ipk~~PP~L~~----~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  223 ---IPKSAPPRLDG----DFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             ---ccCCCCCcccc----ccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence               01111222222    33444889999999999999999999985

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1.7e-38  Score=332.57  Aligned_cols=250  Identities=17%  Similarity=0.185  Sum_probs=194.4

Q ss_pred             CCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      |+..+.||+|+||.||+|. ..+|+.||||.+....   ......+.+|+.++++++|+||+++++++...        +
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~--------~   73 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETK--------D   73 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccC--------C
Confidence            6778899999999999998 4679999999987432   22334678899999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|..++.... ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~~g~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nill~~~~~~kl~Dfg~~  149 (285)
T cd05631          74 ALCLVLTIMNGGDLKFHIYNMG-NPGFDEQRAIFYAAELCCGLEDLQR---ERIVYRDLKPENILLDDRGHIRISDLGLA  149 (285)
T ss_pred             eEEEEEEecCCCcHHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeCCCc
Confidence            7899999999999988775431 3358999999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~  676 (747)
                      +.........             ...++..|++||.+....++.++|||||||++|||++|+.||....... ...+...
T Consensus       150 ~~~~~~~~~~-------------~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~  216 (285)
T cd05631         150 VQIPEGETVR-------------GRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRR  216 (285)
T ss_pred             EEcCCCCeec-------------CCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHH
Confidence            7643221110             1234667899999998899999999999999999999999997543211 1111111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  726 (747)
                      ... ..         ..++......+.+++.+||+.||.+||+     ++++++.
T Consensus       217 ~~~-~~---------~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         217 VKE-DQ---------EEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             hhc-cc---------ccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence            100 00         0112223345889999999999999997     7888763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2e-38  Score=337.97  Aligned_cols=241  Identities=19%  Similarity=0.242  Sum_probs=192.5

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      +.||+|+||.||+|+. .+|+.||||+++...   ......+.+|++++++++||||+++++++...        +..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~--------~~~~l   72 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTH--------DRLCF   72 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcC--------CEEEE
Confidence            3689999999999984 579999999997432   23445678899999999999999999988763        47899


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      ||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++...
T Consensus        73 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~L~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~  146 (323)
T cd05571          73 VMEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALGYLHS---CDVVYRDLKLENLMLDKDGHIKITDFGLCKEGI  146 (323)
T ss_pred             EEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEeeCCCCcccc
Confidence            99999999999988753   468999999999999999999999   899999999999999999999999999986432


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCC
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG  681 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~  681 (747)
                      ....            .....+++..|+|||++....++.++|||||||++|||+||+.||...+...........    
T Consensus       147 ~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~----  210 (323)
T cd05571         147 SDGA------------TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME----  210 (323)
T ss_pred             cCCC------------cccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcC----
Confidence            1110            011245778899999998889999999999999999999999998765443322221111    


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                           +..+    +......+.+++.+||+.||++||     ++.++++
T Consensus       211 -----~~~~----p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         211 -----EIRF----PRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             -----CCCC----CCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence                 0111    122234488999999999999999     7888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=1.4e-38  Score=345.36  Aligned_cols=259  Identities=24%  Similarity=0.306  Sum_probs=197.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||.||+|+.      .++..||||+++... ......+.+|+++++.+ +|||||+++|+|...  
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~--  114 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHG--  114 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCC--
Confidence            35788899999999999999873      224589999997432 33346788999999999 899999999998763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCC---------------------------------------------------
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENC---------------------------------------------------  539 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------------------------------------------------  539 (747)
                            ...++||||+++|+|.++++...                                                   
T Consensus       115 ------~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (374)
T cd05106         115 ------GPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVS  188 (374)
T ss_pred             ------CCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcc
Confidence                  37899999999999998875321                                                   


Q ss_pred             ----------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          540 ----------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       540 ----------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                                      ....+++....+++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++.....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~  265 (374)
T cd05106         189 SSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMND  265 (374)
T ss_pred             ccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCEEeccCchheEEEeCCCeEEEeeceeeeeccCC
Confidence                            11247888999999999999999999   89999999999999999999999999998754322


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhh-HHHHHhccCcCC
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFL-LNEMASFGSQDG  681 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~-~~~~~~~~~~~~  681 (747)
                      ......+.          ...+..|++||++....++.++|||||||++|||++ |+.||....... .........   
T Consensus       266 ~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~---  332 (374)
T cd05106         266 SNYVVKGN----------ARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGY---  332 (374)
T ss_pred             cceeeccC----------CCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHccc---
Confidence            11110000          011235889998888889999999999999999997 999986433211 111111110   


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                           .+.....    .+..+.+++.+||+.||++|||+.+|+++|+.+
T Consensus       333 -----~~~~~~~----~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         333 -----QMSRPDF----APPEIYSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             -----CccCCCC----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                 0111111    223488999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=6e-38  Score=327.31  Aligned_cols=261  Identities=21%  Similarity=0.326  Sum_probs=199.8

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCc----EEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGT----YVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|++.+.||+|+||+||+|++ .+++    .||+|.+.... .....++..|+..+++++||||++++|++..      
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~------   80 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG------   80 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC------
Confidence            4678889999999999999985 4454    47777775332 2334677888889999999999999998753      


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++++||+++|+|.+++...  ...++|..+..++.||+.||+|||+   .+++||||||+|||++.++.+||+|
T Consensus        81 ---~~~~~i~e~~~~gsL~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~kl~D  152 (279)
T cd05111          81 ---ASLQLVTQLSPLGSLLDHVRQH--RDSLDPQRLLNWCVQIAKGMYYLEE---HRMVHRNLAARNILLKSDSIVQIAD  152 (279)
T ss_pred             ---CccEEEEEeCCCCcHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEEcC
Confidence               2468999999999999999754  3468999999999999999999999   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++...........          ....++..|++||......++.++|||||||++||++| |+.|+..........
T Consensus       153 fg~~~~~~~~~~~~~~----------~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~  222 (279)
T cd05111         153 FGVADLLYPDDKKYFY----------SEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPD  222 (279)
T ss_pred             CccceeccCCCccccc----------CCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence            9999765332211000          01123345778888888889999999999999999998 998987654433333


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQAT  736 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~  736 (747)
                      ......     ....+   ..++    ..+.+++.+||..+|++|||+.|+++.|..+.+.++.
T Consensus       223 ~~~~~~-----~~~~~---~~~~----~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~~~~  274 (279)
T cd05111         223 LLEKGE-----RLAQP---QICT----IDVYMVMVKCWMIDENVRPTFKELANEFTRMARDPPR  274 (279)
T ss_pred             HHHCCC-----cCCCC---CCCC----HHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhCCcc
Confidence            322111     11111   1122    2367889999999999999999999999988775543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=4.2e-38  Score=336.72  Aligned_cols=262  Identities=18%  Similarity=0.223  Sum_probs=199.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+++. .+|..||+|.+... .....+.+.+|+++|++++||||+++++++...        
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------   75 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD--------   75 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC--------
Confidence            36799999999999999999995 46889999998753 233446789999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      +..++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++.+||+|||+
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  150 (331)
T cd06649          76 GEISICMEHMDGGSLDQVLKEA---KRIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGV  150 (331)
T ss_pred             CEEEEEeecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCcc
Confidence            4789999999999999998753   3588999999999999999999983  3599999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ++........              ...++..|++||.+....++.++|||||||++|||+||+.||...+...+......
T Consensus       151 ~~~~~~~~~~--------------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~  216 (331)
T cd06649         151 SGQLIDSMAN--------------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGR  216 (331)
T ss_pred             cccccccccc--------------cCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcc
Confidence            8654321110              12356678899999888899999999999999999999999875443332221111


Q ss_pred             cCcCC-------cccc----------------------------ccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH
Q 044236          677 GSQDG-------RRRI----------------------------VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE  721 (747)
Q Consensus       677 ~~~~~-------~~~~----------------------------~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  721 (747)
                      .....       ....                            ................+.+++.+||+.||++|||+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~  296 (331)
T cd06649         217 PVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLK  296 (331)
T ss_pred             cccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHH
Confidence            00000       0000                            000000000112344588999999999999999999


Q ss_pred             HHHHHH
Q 044236          722 DVLWNL  727 (747)
Q Consensus       722 evl~~L  727 (747)
                      |++++.
T Consensus       297 ell~h~  302 (331)
T cd06649         297 MLMNHT  302 (331)
T ss_pred             HHhcCh
Confidence            999765

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-38  Score=334.42  Aligned_cols=245  Identities=20%  Similarity=0.274  Sum_probs=196.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||++....   ....+.+.+|++++++++||||+++++++.+        
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--------   72 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHD--------   72 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhcc--------
Confidence            3688899999999999999995 468999999987432   2234568899999999999999999988765        


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+++|+|.+++...   ..+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        73 ~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~NIli~~~~~~kl~Dfg  146 (291)
T cd05612          73 QRFLYMLMEYVPGGELFSYLRNS---GRFSNSTGLFYASEIVCALEYLHS---KEIVYRDLKPENILLDKEGHIKLTDFG  146 (291)
T ss_pred             CCeEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEEecC
Confidence            34789999999999999998753   458899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++.......               ...++..|+|||.+....++.++|||||||++|||++|+.||.............
T Consensus       147 ~~~~~~~~~~---------------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~  211 (291)
T cd05612         147 FAKKLRDRTW---------------TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKIL  211 (291)
T ss_pred             cchhccCCcc---------------cccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            9875432110               1245667899999988889999999999999999999999987654332222111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLWN  726 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  726 (747)
                      ...         ..+....    ...+.+++.+||+.||.+||+     +.|++++
T Consensus       212 ~~~---------~~~~~~~----~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         212 AGK---------LEFPRHL----DLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             hCC---------cCCCccC----CHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence            110         0111112    334789999999999999995     8888764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-38  Score=322.44  Aligned_cols=262  Identities=20%  Similarity=0.312  Sum_probs=198.6

Q ss_pred             HHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch--------------hcHHHHHHHHHHHhcCCCCCccee
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK--------------YSIQNLKVRLDFLSKLQHPHLVSL  501 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~--------------~~~~~~~~E~~~l~~l~H~nIv~l  501 (747)
                      +..+.|.+...||+|.||+|-+|+ ..+++.||||++...+.              ...+...+||.+|++++|||||+|
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            456789999999999999999999 56799999999964321              134678999999999999999999


Q ss_pred             eeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCC-CCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCc
Q 044236          502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNN  580 (747)
Q Consensus       502 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~-l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~N  580 (747)
                      +.+.-+.      ..+.+|||+|||..|.+...=.    ..+ ++..++.+|+.++..||+|||.   ++||||||||+|
T Consensus       174 iEvLDDP------~s~~~YlVley~s~G~v~w~p~----d~~els~~~Ar~ylrDvv~GLEYLH~---QgiiHRDIKPsN  240 (576)
T KOG0585|consen  174 IEVLDDP------ESDKLYLVLEYCSKGEVKWCPP----DKPELSEQQARKYLRDVVLGLEYLHY---QGIIHRDIKPSN  240 (576)
T ss_pred             EEeecCc------ccCceEEEEEeccCCccccCCC----CcccccHHHHHHHHHHHHHHHHHHHh---cCeeccccchhh
Confidence            9986553      3578999999999998864322    334 8999999999999999999999   899999999999


Q ss_pred             eeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC----CCcCCceeehhHHHHHHh
Q 044236          581 ILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR----TKLEDDVYNFGFILLESL  656 (747)
Q Consensus       581 ILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----~s~k~DVwSfGvvl~Ell  656 (747)
                      +||+.+|++||+|||.+.........     .....  .....||++++|||....+.    .+.+.||||+||+||-|+
T Consensus       241 LLl~~~g~VKIsDFGVs~~~~~~~~~-----~~d~~--L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCll  313 (576)
T KOG0585|consen  241 LLLSSDGTVKISDFGVSNEFPQGSDE-----GSDDQ--LSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLL  313 (576)
T ss_pred             eEEcCCCcEEeeccceeeecccCCcc-----ccHHH--HhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhh
Confidence            99999999999999998654221100     00000  01146788899999876532    356889999999999999


Q ss_pred             hCCCCCCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          657 VGPIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       657 tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      .|+.||-.... +...++..           +|-..++ .++....+.+|++++|+.||.+|.+..+|..+....
T Consensus       314 fG~~PF~~~~~~~l~~KIvn-----------~pL~fP~-~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt  376 (576)
T KOG0585|consen  314 FGQLPFFDDFELELFDKIVN-----------DPLEFPE-NPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVT  376 (576)
T ss_pred             hccCCcccchHHHHHHHHhc-----------CcccCCC-cccccHHHHHHHHHHhhcChhheeehhhheecceec
Confidence            99998865432 22222221           1111111 124455688999999999999999999998766543

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=2.4e-38  Score=338.17  Aligned_cols=246  Identities=20%  Similarity=0.280  Sum_probs=196.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.||||+++...   ....+.+.+|+.++++++||||+++++++...      
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------   90 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDE------   90 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcC------
Confidence            35788899999999999999995 468999999997432   23346788999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        91 --~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~Df  162 (329)
T PTZ00263         91 --NRVYFLLEFVVGGELFTHLRKA---GRFPNDVAKFYHAELVLAFEYLHS---KDIIYRDLKPENLLLDNKGHVKVTDF  162 (329)
T ss_pred             --CEEEEEEcCCCCChHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEECCCCCEEEeec
Confidence              4799999999999999998753   457888899999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.......               ..+++..|+|||.+....++.++|||||||++|||+||+.||.........+..
T Consensus       163 g~~~~~~~~~~---------------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i  227 (329)
T PTZ00263        163 GFAKKVPDRTF---------------TLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKI  227 (329)
T ss_pred             cCceEcCCCcc---------------eecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence            99975432110               134567789999998888999999999999999999999998754433222211


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  726 (747)
                      ...    .     ..+...+    ...+.+++.+||+.||.+||+     +.+++.+
T Consensus       228 ~~~----~-----~~~p~~~----~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        228 LAG----R-----LKFPNWF----DGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             hcC----C-----cCCCCCC----CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            110    0     0111112    234789999999999999997     6787743

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=316.29  Aligned_cols=281  Identities=17%  Similarity=0.255  Sum_probs=209.3

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEee--ccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLT--FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~--~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ...|..++.||+|+||.|.++. ..+|+.||||++.  .......+...+|+.+|+.++|+|||.+++.+....   ...
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~---~~~   97 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPS---RDK   97 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccc---ccc
Confidence            3456667889999999999998 5679999999997  455666788899999999999999999999887521   233


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      .+.+|+|+|+|+. ||.+.++.   +..|+......+..|+++||.|+|+   -+|+||||||+|+|++.+...||+|||
T Consensus        98 f~DvYiV~elMet-DL~~iik~---~~~L~d~H~q~f~YQiLrgLKyiHS---AnViHRDLKPsNll~n~~c~lKI~DFG  170 (359)
T KOG0660|consen   98 FNDVYLVFELMET-DLHQIIKS---QQDLTDDHAQYFLYQILRGLKYIHS---ANVIHRDLKPSNLLLNADCDLKICDFG  170 (359)
T ss_pred             cceeEEehhHHhh-HHHHHHHc---CccccHHHHHHHHHHHHHhcchhhc---ccccccccchhheeeccCCCEEecccc
Confidence            5689999999955 99999986   3448888889999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCCC-CChhhhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVTG-KGEAFLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~~-~~~~~~~~~~  673 (747)
                      +||.......   .    ....+|   .-|..|.|||++. ...||...||||.|||+.||++|++-|. ....+++..+
T Consensus       171 LAR~~~~~~~---~----~~mTeY---VaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI  240 (359)
T KOG0660|consen  171 LARYLDKFFE---D----GFMTEY---VATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLI  240 (359)
T ss_pred             ceeeccccCc---c----cchhcc---eeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHH
Confidence            9998754310   0    111122   3456778888775 5579999999999999999999976554 3444444444


Q ss_pred             HhccCcCCc-----------cccc-------cccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 044236          674 ASFGSQDGR-----------RRIV-------DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQA  735 (747)
Q Consensus       674 ~~~~~~~~~-----------~~~~-------d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  735 (747)
                      ......+..           +..+       .......+ +.......+|+.+++..||.+|+|++|++++--...--.+
T Consensus       241 ~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~f-p~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp  319 (359)
T KOG0660|consen  241 LELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIF-PNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDP  319 (359)
T ss_pred             HHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHc-CCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCC
Confidence            333222110           0000       00000111 2344568899999999999999999999986644444444


Q ss_pred             hcccc
Q 044236          736 TADAD  740 (747)
Q Consensus       736 ~~~~~  740 (747)
                      ..++.
T Consensus       320 ~dEP~  324 (359)
T KOG0660|consen  320 EDEPV  324 (359)
T ss_pred             ccCCC
Confidence            44443

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.7e-38  Score=336.13  Aligned_cols=252  Identities=21%  Similarity=0.265  Sum_probs=198.5

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+++.||||+++...   ....+.+.+|++++..++||||+++++++...       
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~-------   73 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDD-------   73 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcC-------
Confidence            3688899999999999999995 468999999997432   23446788999999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg  146 (333)
T cd05600          74 -EYLYLAMEYVPGGDFRTLLNNL---GVLSEDHARFYMAEMFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFG  146 (333)
T ss_pred             -CEEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEEEeCc
Confidence             4799999999999999999753   458899999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~  674 (747)
                      +++......               ....++..|++||.+....++.++|||||||++|||++|..||........ ..+.
T Consensus       147 ~a~~~~~~~---------------~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~  211 (333)
T cd05600         147 LSKGIVTYA---------------NSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLK  211 (333)
T ss_pred             CCccccccc---------------CCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHH
Confidence            986543200               012456678999999888999999999999999999999999975543322 2222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ............++.      ......+.+++.+||..+|.+||++.|++++
T Consensus       212 ~~~~~~~~~~~~~~~------~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         212 YWKETLQRPVYDDPR------FNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             hccccccCCCCCccc------cccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            111100000000100      1223457889999999999999999999965

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4e-38  Score=336.05  Aligned_cols=242  Identities=21%  Similarity=0.296  Sum_probs=197.1

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~  512 (747)
                      ..++|..+++||+|+||+|+++.. .+++.+|||++++.   ...+++..+.|.+++.-. +||.++.++++|..     
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT-----  440 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQT-----  440 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccccccc-----
Confidence            457899999999999999999995 46899999999864   356678888898888766 59999999988866     


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                         .+++|.||||+.|||+..+.+    ...++...+..|+..|+.||.|||+   .+||+||||.+|||||.+|.+||+
T Consensus       441 ---~~~l~fvmey~~Ggdm~~~~~----~~~F~e~rarfyaAev~l~L~fLH~---~~IIYRDlKLdNiLLD~eGh~kiA  510 (694)
T KOG0694|consen  441 ---KEHLFFVMEYVAGGDLMHHIH----TDVFSEPRARFYAAEVVLGLQFLHE---NGIIYRDLKLDNLLLDTEGHVKIA  510 (694)
T ss_pred             ---CCeEEEEEEecCCCcEEEEEe----cccccHHHHHHHHHHHHHHHHHHHh---cCceeeecchhheEEcccCcEEec
Confidence               358999999999999766665    3459999999999999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+++..--....            ...+|||+.|+|||++....|+..+|+|||||+||||++|..||..++.+.+..
T Consensus       511 DFGlcKe~m~~g~~------------TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~Fd  578 (694)
T KOG0694|consen  511 DFGLCKEGMGQGDR------------TSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFD  578 (694)
T ss_pred             ccccccccCCCCCc------------cccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            99999753211110            113799999999999999999999999999999999999999998555443332


Q ss_pred             -HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH
Q 044236          673 -MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF  720 (747)
Q Consensus       673 -~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  720 (747)
                       +..          .|+.++.    -.+.+..+++.+.+..+|++|--+
T Consensus       579 sI~~----------d~~~yP~----~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  579 SIVN----------DEVRYPR----FLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             HHhc----------CCCCCCC----cccHHHHHHHHHHhccCcccccCC
Confidence             221          1222222    333447888899999999999655

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.8e-38  Score=332.25  Aligned_cols=239  Identities=17%  Similarity=0.186  Sum_probs=188.2

Q ss_pred             ccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          448 MGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       448 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ||+|+||.||+|+. .+++.||+|+++..   .......+.+|+.++++++||||++++++|...        +..++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~~~~lv~   72 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSP--------EKLYLVL   72 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecC--------CeEEEEE
Confidence            69999999999995 56889999998743   233456778899999999999999999988763        4789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++|+|.+++...   ..+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+++.....
T Consensus        73 e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~  146 (312)
T cd05585          73 AFINGGELFHHLQRE---GRFDLSRARFYTAELLCALENLHK---FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKD  146 (312)
T ss_pred             cCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHeEECCCCcEEEEECcccccCccC
Confidence            999999999998753   458999999999999999999999   88999999999999999999999999998753221


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      ...            ....+++..|+|||.+....++.++|||||||++|||+||+.||.............  . .   
T Consensus       147 ~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~--~-~---  208 (312)
T cd05585         147 DDK------------TNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKIL--Q-E---  208 (312)
T ss_pred             CCc------------cccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHH--c-C---
Confidence            110            011346678899999988889999999999999999999999987544332211111  0 0   


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC---HHHHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS---FEDVLW  725 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~evl~  725 (747)
                         ...    ++......+.+++.+||+.||.+||+   +.|++.
T Consensus       209 ---~~~----~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~  246 (312)
T cd05585         209 ---PLR----FPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKN  246 (312)
T ss_pred             ---CCC----CCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence               011    11223344889999999999999985   566654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=1.3e-38  Score=328.35  Aligned_cols=250  Identities=30%  Similarity=0.479  Sum_probs=187.2

Q ss_pred             ccccccCCCCeeEEEEEeC-----CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          444 SLSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~-----~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ..+.||+|.||.||+|.+.     .+..|+||.++... ....+.+.+|++.+++++||||++++|+|...        .
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~--------~   74 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIEN--------E   74 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESS--------S
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccc--------c
Confidence            3567999999999999965     36789999996532 33468899999999999999999999999853        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.++|+.. ....+++..+..|+.||++||+|||+   .+|+|+||+++||+++.++.+||+|||++
T Consensus        75 ~~~lv~e~~~~g~L~~~L~~~-~~~~~~~~~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~nill~~~~~~Kl~~f~~~  150 (259)
T PF07714_consen   75 PLFLVMEYCPGGSLDDYLKSK-NKEPLSEQQRLSIAIQIAEALSYLHS---NNIIHGNLSPSNILLDSNGQVKLSDFGLS  150 (259)
T ss_dssp             SEEEEEE--TTEBHHHHHHHT-CTTTSBHHHHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEEETTTEEEEESTTTG
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence            589999999999999999864 23568999999999999999999999   78999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~  676 (747)
                      +............          .......|.+||.+....++.++||||||+++||+++ |+.|+.......+......
T Consensus       151 ~~~~~~~~~~~~~----------~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~  220 (259)
T PF07714_consen  151 RPISEKSKYKNDS----------SQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQ  220 (259)
T ss_dssp             EETTTSSSEEEST----------TSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHT
T ss_pred             ccccccccccccc----------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7652211111000          0112345778898888889999999999999999999 6788865443332222111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ...        +.....++    ..+.+++.+||+.+|++||||.+|++.|
T Consensus       221 ~~~--------~~~~~~~~----~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  221 GQR--------LPIPDNCP----KDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             TEE--------TTSBTTSB----HHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             ccc--------ceeccchh----HHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            110        11112233    3488999999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=7.6e-38  Score=327.51  Aligned_cols=271  Identities=20%  Similarity=0.318  Sum_probs=199.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .+|++.+.||+|+||.||+|..     .+++.||||++........+.+.+|++++++++||||+++++++...+     
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----   78 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG-----   78 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCC-----
Confidence            4688889999999999999974     257899999988666566678899999999999999999999886532     


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       ....++||||+++|+|.+++...  ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        79 -~~~~~lv~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~~l~~aL~~LH~---~~i~H~dlkp~nili~~~~~~~l~df  152 (284)
T cd05081          79 -RRNLRLVMEYLPYGSLRDYLQKH--RERLDHRKLLLYASQICKGMEYLGS---KRYVHRDLATRNILVESENRVKIGDF  152 (284)
T ss_pred             -CCceEEEEEecCCCCHHHHHHhc--CcCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHhhEEECCCCeEEECCC
Confidence             34689999999999999998753  3458999999999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.............  .       ......|.+||......++.++|||||||++|||++|..++..........+.
T Consensus       153 g~~~~~~~~~~~~~~~~--~-------~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~  223 (284)
T cd05081         153 GLTKVLPQDKEYYKVRE--P-------GESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMG  223 (284)
T ss_pred             cccccccCCCcceeecC--C-------CCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcc
Confidence            99976543221110000  0       01112366788887778899999999999999999986665432221111100


Q ss_pred             hccCcC-C---ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          675 SFGSQD-G---RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       675 ~~~~~~-~---~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ...... .   ..+..........+......+.+++.+||+.+|++|||+.||++.|+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         224 NDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             cccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            000000 0   0000000000011122334589999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.1e-37  Score=311.95  Aligned_cols=270  Identities=19%  Similarity=0.245  Sum_probs=199.2

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCC-cceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPH-LVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~n-Iv~l~g~~~~~~~~~~~  514 (747)
                      ...|+.+++||+|.||+||+|+ ..+|+.||+|+++...+  .......+|+.+|++++|+| ||++++++.....  ..
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~--~~   87 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNN--HR   87 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccc--cc
Confidence            3456667789999999999999 67799999999986543  23355689999999999999 9999999987431  12


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPE-NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~-~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                      .....++||||++. +|.+++...... ..++-..++.++.|+++||+|||+   .+|+||||||+||||+.+|.+||+|
T Consensus        88 ~~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~---~~IlHRDLKPQNlLi~~~G~lKlaD  163 (323)
T KOG0594|consen   88 GIGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHS---HGILHRDLKPQNLLISSSGVLKLAD  163 (323)
T ss_pred             ccceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCcceEEECCCCcEeeec
Confidence            23478999999976 999999864321 457778899999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCC-CCChhhhHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVT-GKGEAFLLN  671 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~-~~~~~~~~~  671 (747)
                      ||+|+...-..          ..|...  ..+..|.|||++.+. .|+..+||||+|||+.||++++.-| +..+.+++.
T Consensus       164 FGlAra~~ip~----------~~yt~e--vvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~  231 (323)
T KOG0594|consen  164 FGLARAFSIPM----------RTYTPE--VVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLF  231 (323)
T ss_pred             cchHHHhcCCc----------cccccc--EEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence            99997432111          111111  233447888888766 6999999999999999999996555 455555555


Q ss_pred             HHHhccCcCCcccc------cc--cccc-----CCCC---HHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDGRRRI------VD--PVVL-----TTCS---QESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~~~~~------~d--~~~~-----~~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+-+....+.....      .+  +...     ....   +.......+++.+|++.+|.+|.|+..++.+
T Consensus       232 ~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  232 RIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             HHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            55443332211111      00  0000     0001   1112357889999999999999999999976

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=2.1e-37  Score=324.81  Aligned_cols=263  Identities=22%  Similarity=0.308  Sum_probs=203.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|.+.+.||+|+||.||++..      .++..+|+|.+........+.+.+|++++++++||||++++++|...     
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   79 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG-----   79 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC-----
Confidence            5688889999999999999974      23567999998765555567899999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCC----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENC----------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL  583 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  583 (747)
                         ...++||||+++|+|.+++....          ....+++..++.++.|++.||+|||+   .+++||||||+||++
T Consensus        80 ---~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~---~~i~H~dlkp~Nili  153 (288)
T cd05093          80 ---DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLV  153 (288)
T ss_pred             ---CccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcceEEE
Confidence               47899999999999999886432          12348999999999999999999998   889999999999999


Q ss_pred             cCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCC
Q 044236          584 DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVT  662 (747)
Q Consensus       584 d~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~  662 (747)
                      +.++.+||+|||+++............          ...++..|++||.+....++.++|||||||++|||+| |..|+
T Consensus       154 ~~~~~~kl~dfg~~~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~  223 (288)
T cd05093         154 GENLLVKIGDFGMSRDVYSTDYYRVGG----------HTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPW  223 (288)
T ss_pred             ccCCcEEeccCCccccccCCceeecCC----------CCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            999999999999987553221111100          0112346788998888889999999999999999999 88888


Q ss_pred             CCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 044236          663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQA  735 (747)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  735 (747)
                      ...............   ..     +.....++    ..+.+++.+||+.+|.+|||+.|+...|+.+.....
T Consensus       224 ~~~~~~~~~~~i~~~---~~-----~~~~~~~~----~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~~  284 (288)
T cd05093         224 YQLSNNEVIECITQG---RV-----LQRPRTCP----KEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKASP  284 (288)
T ss_pred             CCCCHHHHHHHHHcC---Cc-----CCCCCCCC----HHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhcc
Confidence            654332221111111   00     01111223    348999999999999999999999999998876543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=1.5e-37  Score=325.04  Aligned_cols=257  Identities=26%  Similarity=0.363  Sum_probs=198.0

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC------CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN------GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ++|++.+.||+|+||.||+|....      ...||+|.++... ......+.+|++++++++||||+++++++...    
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~----   80 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKE----   80 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCC----
Confidence            468889999999999999998532      2579999987433 23346789999999999999999999998763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCC
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN  579 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~  579 (747)
                          ...+++|||+++|+|.+++.....             ...+++...+.++.|++.||+|||+   .+|+||||||+
T Consensus        81 ----~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~  153 (283)
T cd05048          81 ----QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSS---HHFVHRDLAAR  153 (283)
T ss_pred             ----CceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccccc
Confidence                368999999999999998865321             1458899999999999999999999   78999999999


Q ss_pred             ceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-C
Q 044236          580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-G  658 (747)
Q Consensus       580 NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g  658 (747)
                      ||+++.++.+||+|||+++............          ...++..|+|||.+....++.++|||||||++|||++ |
T Consensus       154 Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g  223 (283)
T cd05048         154 NCLVGEGLTVKISDFGLSRDIYSADYYRVQS----------KSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYG  223 (283)
T ss_pred             eEEEcCCCcEEECCCcceeeccccccccccC----------CCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCC
Confidence            9999999999999999997543222111000          0122346889998888889999999999999999998 9


Q ss_pred             CCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       659 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      ..|+.......+.......   ..     +..    +...+..+.+++.+||+.||.+||++.||+++|+.
T Consensus       224 ~~p~~~~~~~~~~~~i~~~---~~-----~~~----~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         224 LQPYYGFSNQEVIEMIRSR---QL-----LPC----PEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             CCCCCCCCHHHHHHHHHcC---Cc-----CCC----cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence            8887644332222211110   00     111    22333458999999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=6.9e-38  Score=335.37  Aligned_cols=246  Identities=18%  Similarity=0.252  Sum_probs=196.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-C-CcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-N-GTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~-g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||.||+|+.. . +..||+|++....   ....+.+.+|+++++.++|||||++++++...     
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~-----  103 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDE-----  103 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeC-----
Confidence            357889999999999999999853 3 4689999986432   23456788999999999999999999999763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus       104 ---~~~~lv~Ey~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~ikL~D  174 (340)
T PTZ00426        104 ---SYLYLVLEFVIGGEFFTFLRRN---KRFPNDVGCFYAAQIVLIFEYLQS---LNIVYRDLKPENLLLDKDGFIKMTD  174 (340)
T ss_pred             ---CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEec
Confidence               4789999999999999999753   458899999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++......               ....++..|+|||++....++.++|||||||++|||++|+.||...........
T Consensus       175 FG~a~~~~~~~---------------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~  239 (340)
T PTZ00426        175 FGFAKVVDTRT---------------YTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQK  239 (340)
T ss_pred             CCCCeecCCCc---------------ceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHH
Confidence            99997643211               113456789999999888899999999999999999999999876543322211


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  726 (747)
                      ....    .     ...    +......+.+++.+|++.||++|+     ++++++++
T Consensus       240 i~~~----~-----~~~----p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        240 ILEG----I-----IYF----PKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             HhcC----C-----CCC----CCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence            1100    0     001    112223478899999999999995     89988764

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.8e-37  Score=331.08  Aligned_cols=242  Identities=21%  Similarity=0.272  Sum_probs=191.6

Q ss_pred             ccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          446 SFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      +.||+|+||.||+++ ..+|+.||||++...   .......+.+|+.+++.++||||+++++++...        +..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--------~~~~l   72 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTK--------DRLCF   72 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcC--------CEEEE
Confidence            368999999999998 456899999999743   233456788899999999999999999988763        47899


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      ||||+++|+|..++..   ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++...
T Consensus        73 v~Ey~~~g~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~  146 (328)
T cd05593          73 VMEYVNGGELFFHLSR---ERVFSEDRTRFYGAEIVSALDYLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGI  146 (328)
T ss_pred             EEeCCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeEECCCCcEEEecCcCCccCC
Confidence            9999999999988865   3458999999999999999999999   899999999999999999999999999986532


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCC
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG  681 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~  681 (747)
                      .....            ....+++..|++||.+....++.++|||||||++|||++|+.||..............   . 
T Consensus       147 ~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~---~-  210 (328)
T cd05593         147 TDAAT------------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILM---E-  210 (328)
T ss_pred             Ccccc------------cccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhcc---C-
Confidence            21110            0113466789999999888899999999999999999999999865443322211110   0 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHH
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWN  726 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  726 (747)
                           +..++...    ...+.+++.+||+.||.+||     ++.|++++
T Consensus       211 -----~~~~p~~~----~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         211 -----DIKFPRTL----SADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             -----CccCCCCC----CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence                 11111222    33478899999999999997     89998864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=1.3e-37  Score=331.53  Aligned_cols=241  Identities=20%  Similarity=0.247  Sum_probs=190.6

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      +.||+|+||.||+++. .+|+.||+|+++..   .......+.+|+.++++++||||+++++++...        ...++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~--------~~~~l   72 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH--------DRLCF   72 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecC--------CEEEE
Confidence            3689999999999984 57899999999743   223445677899999999999999999988763        47899


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      ||||+++|+|..++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...
T Consensus        73 v~E~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  146 (323)
T cd05595          73 VMEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGI  146 (323)
T ss_pred             EEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEEcCCCCEEecccHHhcccc
Confidence            99999999999888653   458999999999999999999999   899999999999999999999999999986432


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCC
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG  681 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~  681 (747)
                      .....            .....++..|++||.+....++.++|||||||++|||++|+.||...+...........    
T Consensus       147 ~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~----  210 (323)
T cd05595         147 SDGAT------------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILME----  210 (323)
T ss_pred             CCCCc------------cccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcC----
Confidence            11110            01134567899999998889999999999999999999999998754433222211110    


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                           +..++..++    ..+.+++.+||+.||++||     ++.++++
T Consensus       211 -----~~~~p~~~~----~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         211 -----EIRFPRTLS----PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             -----CCCCCCCCC----HHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence                 011112233    3478999999999999998     8888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.4e-37  Score=320.36  Aligned_cols=252  Identities=23%  Similarity=0.305  Sum_probs=195.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|.+.+.||+|+||.||+|+..++..+|||.+... ......+.+|+.++++++||||++++++|...        ...
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~~   74 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQ--------RPI   74 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCC-cccHHHHHHHHHHHhcCCCCCeeeEEEEEccC--------CCc
Confidence            457788899999999999999877778999988743 23356789999999999999999999998763        367


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++...  ...++|..++.++.|++.||+|||+   .+++||||||+||+++.++.+||+|||.++.
T Consensus        75 ~lv~e~~~~~~l~~~i~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~d~g~~~~  149 (256)
T cd05113          75 YIVTEYMSNGCLLNYLREH--GKRFQPSQLLEMCKDVCEGMAYLES---KQFIHRDLAARNCLVDDQGCVKVSDFGLSRY  149 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCCEEECCCcccee
Confidence            9999999999999998753  2358999999999999999999999   8999999999999999999999999999876


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ..........        +   ..++..|++||......++.++|||||||++|||++ |+.|+................
T Consensus       150 ~~~~~~~~~~--------~---~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~  218 (256)
T cd05113         150 VLDDEYTSSV--------G---SKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGL  218 (256)
T ss_pred             cCCCceeecC--------C---CccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCC
Confidence            5332111000        0   112235778888877789999999999999999999 888887543322211111110


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      .        +.....    ....+.+++.+||+.+|.+||++.++++.|+
T Consensus       219 ~--------~~~~~~----~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         219 R--------LYRPHL----ASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             C--------CCCCCC----CCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence            0        000111    2345889999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=2.4e-37  Score=330.86  Aligned_cols=261  Identities=18%  Similarity=0.239  Sum_probs=198.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+.. +++.+|+|.+... +......+.+|++++++++|||||+++++|...        
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------   75 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD--------   75 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEEC--------
Confidence            367999999999999999999954 6889999988753 233446788999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      +..++||||+++|+|.+++...   ..+++.....++.|++.||.|||+.  .+|+||||||+|||++.++.+||+|||+
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~  150 (333)
T cd06650          76 GEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGV  150 (333)
T ss_pred             CEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCc
Confidence            4799999999999999998753   3588899999999999999999973  3699999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ++.......              ....++..|++||.+....++.++|||||||++|||++|+.|+..........+...
T Consensus       151 ~~~~~~~~~--------------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~  216 (333)
T cd06650         151 SGQLIDSMA--------------NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGC  216 (333)
T ss_pred             chhhhhhcc--------------ccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcC
Confidence            865432110              012345678899999888899999999999999999999999875443333222111


Q ss_pred             cCcCCcc---------cc------ccccc-----------------cCCC-CHHHHHHHHHHHhHccCCCCCCCCCHHHH
Q 044236          677 GSQDGRR---------RI------VDPVV-----------------LTTC-SQESLSIVVSITNKCICPEPSSRPSFEDV  723 (747)
Q Consensus       677 ~~~~~~~---------~~------~d~~~-----------------~~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev  723 (747)
                      .......         ..      ..+..                 .... ......++.+++.+||+.||++|||+.|+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~el  296 (333)
T cd06650         217 PVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQL  296 (333)
T ss_pred             cccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHH
Confidence            0000000         00      00000                 0000 00123458899999999999999999999


Q ss_pred             HHH
Q 044236          724 LWN  726 (747)
Q Consensus       724 l~~  726 (747)
                      +++
T Consensus       297 l~h  299 (333)
T cd06650         297 MVH  299 (333)
T ss_pred             hhC
Confidence            864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2e-37  Score=320.14  Aligned_cols=254  Identities=19%  Similarity=0.322  Sum_probs=199.1

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||.||+|...+++.||+|.+.... ...+.+.+|+.++++++|+||+++++++...        ...
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~~   76 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTKE--------EPI   76 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCC--------CCc
Confidence            5788899999999999999998888899999886432 3457889999999999999999999988653        368


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.++++.. ....+++..++.++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++.
T Consensus        77 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~  152 (261)
T cd05072          77 YIITEYMAKGSLLDFLKSD-EGGKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARV  152 (261)
T ss_pred             EEEEecCCCCcHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEecCCCcEEECCCcccee
Confidence            9999999999999998753 23458899999999999999999999   7899999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ..........           .......|++||......++.++|||||||++|||+| |+.|+................
T Consensus       153 ~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~  221 (261)
T cd05072         153 IEDNEYTARE-----------GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGY  221 (261)
T ss_pred             cCCCceeccC-----------CCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCC
Confidence            5432111000           0112235788888878888999999999999999999 888886543322222111110


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                              .......++    ..+.+++.+||+.+|++||++.++.+.|+.
T Consensus       222 --------~~~~~~~~~----~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         222 --------RMPRMENCP----DELYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             --------CCCCCCCCC----HHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                    011111223    348899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.4e-37  Score=338.71  Aligned_cols=260  Identities=22%  Similarity=0.262  Sum_probs=197.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~  510 (747)
                      .++|.+.+.||+|+||.||+|+..      .+..||||+++... ....+.+.+|+++++++. |||||+++|+|...  
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~--  113 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS--  113 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC--
Confidence            457888899999999999999742      23579999997432 334567899999999996 99999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCC---------------------------------------------------
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENC---------------------------------------------------  539 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------------------------------------------------  539 (747)
                            ...++|||||++|+|.++++...                                                   
T Consensus       114 ------~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (400)
T cd05105         114 ------GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQ  187 (400)
T ss_pred             ------CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccc
Confidence                  37899999999999998876421                                                   


Q ss_pred             ------------------------------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCC
Q 044236          540 ------------------------------------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLT  577 (747)
Q Consensus       540 ------------------------------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk  577 (747)
                                                                ....+++..+..++.|+++||.|||+   .+|+|||||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dik  264 (400)
T cd05105         188 YVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS---KNCVHRDLA  264 (400)
T ss_pred             cchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCC
Confidence                                                      01247888899999999999999999   889999999


Q ss_pred             CCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh
Q 044236          578 TNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV  657 (747)
Q Consensus       578 ~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt  657 (747)
                      |+|||++.++.+||+|||+++............          ...++..|++||.+....++.++|||||||++|||++
T Consensus       265 p~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt  334 (400)
T cd05105         265 ARNVLLAQGKIVKICDFGLARDIMHDSNYVSKG----------STFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFS  334 (400)
T ss_pred             hHhEEEeCCCEEEEEeCCcceeccccccccccC----------CcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHH
Confidence            999999999999999999997653322111000          0112346788998888889999999999999999997


Q ss_pred             -CCCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          658 -GPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       658 -g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                       |..|+...... ........   ..     .+..    +......+.+++.+||+.||++|||+.+|.++|+.+.
T Consensus       335 ~g~~P~~~~~~~~~~~~~~~~---~~-----~~~~----~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         335 LGGTPYPGMIVDSTFYNKIKS---GY-----RMAK----PDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLL  398 (400)
T ss_pred             CCCCCCcccchhHHHHHHHhc---CC-----CCCC----CccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence             88887643221 11111110   00     0111    1223345889999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=3e-37  Score=324.13  Aligned_cols=261  Identities=21%  Similarity=0.288  Sum_probs=202.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|.+.+.||+|+||.||+|+.      .++..+|+|.+........+.+.+|++++++++||||+++++++...     
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   79 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDG-----   79 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccC-----
Confidence            4577788999999999999973      23567999998765555557789999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCc
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNN  580 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~N  580 (747)
                         ...++||||+++|+|.+++....             ....++|..++.++.|++.||+|||+   .+|+||||||+|
T Consensus        80 ---~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~N  153 (291)
T cd05094          80 ---DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLAS---QHFVHRDLATRN  153 (291)
T ss_pred             ---CceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcce
Confidence               46899999999999999986532             12358999999999999999999999   889999999999


Q ss_pred             eeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CC
Q 044236          581 ILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GP  659 (747)
Q Consensus       581 ILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~  659 (747)
                      |+++.++.+||+|||+++............          ...+...|++||.+....++.++|||||||++|||+| |+
T Consensus       154 il~~~~~~~~l~dfg~a~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~  223 (291)
T cd05094         154 CLVGANLLVKIGDFGMSRDVYSTDYYRVGG----------HTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGK  223 (291)
T ss_pred             EEEccCCcEEECCCCcccccCCCceeecCC----------CCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence            999999999999999997543321110000          0112346788998888889999999999999999999 89


Q ss_pred             CCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       660 ~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .|+..............   .....     ....+    +..+.+++.+||+.+|++|||+.+|+++|+.+...
T Consensus       224 ~p~~~~~~~~~~~~~~~---~~~~~-----~~~~~----~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~  285 (291)
T cd05094         224 QPWFQLSNTEVIECITQ---GRVLE-----RPRVC----PKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKA  285 (291)
T ss_pred             CCCCCCCHHHHHHHHhC---CCCCC-----CCccC----CHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence            88865443222211111   10000     01112    33488999999999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=2.2e-37  Score=323.81  Aligned_cols=268  Identities=22%  Similarity=0.311  Sum_probs=197.9

Q ss_pred             CCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      |+..+.||+|+||+||++..     .+++.||+|.++... ......+.+|++++++++||||++++++|...+      
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~------   79 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQG------   79 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC------
Confidence            37889999999999988653     357899999987542 234567889999999999999999999886532      


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+++|+|.+++..    ..++|..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        80 ~~~~~lv~e~~~~~~l~~~~~~----~~l~~~~~~~i~~~l~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg  152 (283)
T cd05080          80 GKGLQLIMEYVPLGSLRDYLPK----HKLNLAQLLLFAQQICEGMAYLHS---QHYIHRDLAARNVLLDNDRLVKIGDFG  152 (283)
T ss_pred             CceEEEEecCCCCCCHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccChheEEEcCCCcEEEeecc
Confidence            3468999999999999999864    248999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++.............         ...+...|++||......++.++|||||||++|||+||..|+.............
T Consensus       153 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~  223 (283)
T cd05080         153 LAKAVPEGHEYYRVRE---------DGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGP  223 (283)
T ss_pred             cccccCCcchhhccCC---------CCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcc
Confidence            9976543221110000         0011234677887777788999999999999999999998876433221111100


Q ss_pred             ccCc---CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          676 FGSQ---DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       676 ~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ....   ....+..+.......+...+..+.+++.+||+.+|++|||+.+|++.|+++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         224 KQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             cccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            0000   0001111111111122333456899999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=1.8e-37  Score=332.13  Aligned_cols=261  Identities=22%  Similarity=0.299  Sum_probs=198.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~  511 (747)
                      ++|++.+.||+|+||.||+|+.      .+++.||+|+++... ....+.+..|++++.++ +|+||++++++|...+  
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~--   84 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG--   84 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC--
Confidence            4688899999999999999963      235789999987432 23345678899999999 8999999999887532  


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCC---------------------------------------------------
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCP---------------------------------------------------  540 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~---------------------------------------------------  540 (747)
                           ...+++|||+++|+|.+++.....                                                   
T Consensus        85 -----~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (337)
T cd05054          85 -----GPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEED  159 (337)
T ss_pred             -----CCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccc
Confidence                 468999999999999988753210                                                   


Q ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCC
Q 044236          541 -------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP  613 (747)
Q Consensus       541 -------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~  613 (747)
                             ...++|..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+.........+.  
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~--  234 (337)
T cd05054         160 EEGDELYKEPLTLEDLISYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGD--  234 (337)
T ss_pred             hhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccC--
Confidence                   1268999999999999999999998   8999999999999999999999999999976543221111100  


Q ss_pred             CcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChh-hhHHHHHhccCcCCcccccccccc
Q 044236          614 KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVL  691 (747)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~  691 (747)
                              ..+...|++||.+....++.++|||||||++|||++ |..||..... +.........    ..    +.  
T Consensus       235 --------~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~----~~----~~--  296 (337)
T cd05054         235 --------ARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEG----TR----MR--  296 (337)
T ss_pred             --------CCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhcc----CC----CC--
Confidence                    112345888998888899999999999999999998 8888864221 1111111110    00    00  


Q ss_pred             CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          692 TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       692 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                        .+......+.+++.+||+.+|++||++.||+++|+.+.+
T Consensus       297 --~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         297 --APEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             --CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence              111223458899999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.9e-37  Score=334.64  Aligned_cols=249  Identities=16%  Similarity=0.227  Sum_probs=186.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++.... ......+.+|++++++++|+||+++++++...        .
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~  145 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHN--------G  145 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccC--------C
Confidence            3456678899999999999985 568999999986432 23346788999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|....       ...+.....++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus       146 ~~~lv~e~~~~~~L~~~~-------~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DfG~~  215 (353)
T PLN00034        146 EIQVLLEFMDGGSLEGTH-------IADEQFLADVARQILSGIAYLHR---RHIVHRDIKPSNLLINSAKNVKIADFGVS  215 (353)
T ss_pred             eEEEEEecCCCCcccccc-------cCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEcccccc
Confidence            789999999999987542       24567778899999999999999   78999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      +.........            ....++..|++||.+..     ...+.++|||||||++|||++|+.||..........
T Consensus       216 ~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~  283 (353)
T PLN00034        216 RILAQTMDPC------------NSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWAS  283 (353)
T ss_pred             eecccccccc------------cccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHH
Confidence            7654221100            01234567888887642     234568999999999999999999987432211111


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ........     ..+..    +......+.+++.+||+.||++|||+.|++++-
T Consensus       284 ~~~~~~~~-----~~~~~----~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp  329 (353)
T PLN00034        284 LMCAICMS-----QPPEA----PATASREFRHFISCCLQREPAKRWSAMQLLQHP  329 (353)
T ss_pred             HHHHHhcc-----CCCCC----CCccCHHHHHHHHHHccCChhhCcCHHHHhcCc
Confidence            11100000     00111    122234488999999999999999999999764

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-38  Score=340.25  Aligned_cols=256  Identities=22%  Similarity=0.292  Sum_probs=207.8

Q ss_pred             CccccccCCCCeeEEEEEe-CCC----cEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          443 DSLSFMGEGSRGKLYKGRL-ENG----TYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~-~~g----~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ...++||+|+||.||||.| +.|    .+||||++.... .....++..|.-+|.+++|||+++|+|+|..+        
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s--------  770 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLS--------  770 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccc--------
Confidence            4467899999999999984 443    579999987543 34567899999999999999999999999763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                       .+.||++||+.|.|.+|++.+  +..+.-...+.+..|||+||.|||.   +.+|||||.++|||+..-..+||.|||+
T Consensus       771 -~~qlvtq~mP~G~LlDyvr~h--r~~igsq~lLnw~~QIAkgM~YLe~---qrlVHrdLaaRNVLVksP~hvkitdfgl  844 (1177)
T KOG1025|consen  771 -TLQLVTQLMPLGCLLDYVREH--RDNIGSQDLLNWCYQIAKGMKYLEE---QRLVHRDLAARNVLVKSPNHVKITDFGL  844 (1177)
T ss_pred             -hHHHHHHhcccchHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHh---cchhhhhhhhhheeecCCCeEEEEecch
Confidence             478999999999999999876  4568888899999999999999998   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~  675 (747)
                      ++.+..........          .......|+|.|.+....|+.++|||||||.+||++| |..|++....+.+....+
T Consensus       845 a~ll~~d~~ey~~~----------~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle  914 (1177)
T KOG1025|consen  845 AKLLAPDEKEYSAP----------GGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLE  914 (1177)
T ss_pred             hhccCccccccccc----------ccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHh
Confidence            99886554432211          1122346888899999999999999999999999998 688887666555444433


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .+.            +-..|+.+...+..++.+||..|++.||+|+++......++++.
T Consensus       915 ~ge------------RLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ardp  961 (1177)
T KOG1025|consen  915 KGE------------RLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARDP  961 (1177)
T ss_pred             ccc------------cCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcCc
Confidence            221            11234555666899999999999999999999999988776643

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=3.9e-37  Score=318.27  Aligned_cols=255  Identities=20%  Similarity=0.312  Sum_probs=198.8

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .+|.+.+.||+|+||.||+|.. +.++.||+|.+... .....++.+|++++++++||||++++++|...        ..
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~   76 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--------PP   76 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheEEEEcCC--------CC
Confidence            3577788999999999999985 45889999998743 33456789999999999999999999998763        36


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+   .+++||||||+||+++.++.+||+|||+++
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~df~~~~  152 (263)
T cd05052          77 FYIITEFMTYGNLLDYLRECN-RQEVNAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSR  152 (263)
T ss_pred             cEEEEEeCCCCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCcEEeCCCcccc
Confidence            899999999999999986532 3458999999999999999999998   789999999999999999999999999987


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ...........     .      ...+..|++||......++.++|||||||++|||++ |..|+...............
T Consensus       153 ~~~~~~~~~~~-----~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~  221 (263)
T cd05052         153 LMTGDTYTAHA-----G------AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKG  221 (263)
T ss_pred             ccccceeeccC-----C------CCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCC
Confidence            65432111000     0      011235788888888889999999999999999998 88888654433222211110


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                              ..+.....+    +..+.+++.+||+.+|++|||+.+++++|+.+
T Consensus       222 --------~~~~~~~~~----~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         222 --------YRMERPEGC----PPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             --------CCCCCCCCC----CHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence                    011111222    34488999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=3.5e-37  Score=321.76  Aligned_cols=256  Identities=23%  Similarity=0.316  Sum_probs=198.2

Q ss_pred             hCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ++|.+.+.||+|+||.||+|+..      +++.||||.++..... ..+.+.+|++++++++||||+++++++...    
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~----   80 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEG----   80 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecC----
Confidence            45788899999999999999853      2578999998754333 457899999999999999999999998763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENC-----------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                          ...++||||+++|+|.++++...           ....+++..+..++.|++.|+.|||+   .+++||||||+||
T Consensus        81 ----~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~h~dlkp~ni  153 (280)
T cd05049          81 ----DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS---QHFVHRDLATRNC  153 (280)
T ss_pred             ----CCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeeccccccceE
Confidence                37899999999999999987532           12458899999999999999999999   7899999999999


Q ss_pred             eecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCC
Q 044236          582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPI  660 (747)
Q Consensus       582 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~  660 (747)
                      +++.++.+||+|||+++............    .      ...+..|+|||.+....++.++|||||||++|||++ |..
T Consensus       154 li~~~~~~kl~d~g~~~~~~~~~~~~~~~----~------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~  223 (280)
T cd05049         154 LVGYDLVVKIGDFGMSRDVYTTDYYRVGG----H------TMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQ  223 (280)
T ss_pred             EEcCCCeEEECCcccceecccCcceecCC----C------CcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCC
Confidence            99999999999999987543221110000    0      012345788998888899999999999999999999 988


Q ss_pred             CCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      |+................   .     +.....+    ...+.+++.+||+.||++||++.||++.|+
T Consensus       224 p~~~~~~~~~~~~~~~~~---~-----~~~~~~~----~~~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         224 PWYGLSNEEVIECITQGR---L-----LQRPRTC----PSEVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             CCCCCCHHHHHHHHHcCC---c-----CCCCCCC----CHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence            876544332222211110   0     0011122    334889999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=2e-37  Score=324.76  Aligned_cols=261  Identities=19%  Similarity=0.207  Sum_probs=194.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++.+.||+|+||.||+|+. .+++.||||+++...  ....+.+.+|++++++++||||+++++++...        
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------   72 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRR--------   72 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecC--------
Confidence            3688999999999999999996 468899999987532  23346778999999999999999999988763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||++++.+..+...   ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        73 ~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nill~~~~~~kl~Dfg~  146 (287)
T cd07848          73 GKLYLVFEYVEKNMLELLEEM---PNGVPPEKVRSYIYQLIKAIHWCHK---NDIVHRDIKPENLLISHNDVLKLCDFGF  146 (287)
T ss_pred             CEEEEEEecCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeeccC
Confidence            478999999998777654432   3458899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      ++.........           .....++..|++||.+....++.++|||||||++|||++|+.||..... .....+..
T Consensus       147 ~~~~~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~  215 (287)
T cd07848         147 ARNLSEGSNAN-----------YTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQK  215 (287)
T ss_pred             ccccccccccc-----------ccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            97653221100           0112456678999998888899999999999999999999998865322 11111111


Q ss_pred             ccC------------cCCcccccccccc------CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGS------------QDGRRRIVDPVVL------TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~------------~~~~~~~~d~~~~------~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ...            .........+...      ..+....+..+.+++.+|++.||++|||++|+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         216 VLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             hhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            100            0000000000000      0011123456899999999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.2e-37  Score=316.73  Aligned_cols=250  Identities=25%  Similarity=0.358  Sum_probs=194.7

Q ss_pred             CCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +|.+.+.||+|+||.||+|+.+++..+|+|.+.... .....+.+|++++++++||||+++++++...        ...+
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~~~~   75 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA-MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQ--------RPIF   75 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCC--------CceE
Confidence            477788999999999999998777789999886332 2345788899999999999999999988653        3689


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++++|.+++...  ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++..
T Consensus        76 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~  150 (256)
T cd05059          76 IVTEYMANGCLLNYLRER--KGKLGTEWLLDMCSDVCEAMEYLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLARYV  150 (256)
T ss_pred             EEEecCCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCcccccccHhhEEECCCCcEEECCcccceec
Confidence            999999999999998754  2368999999999999999999999   78999999999999999999999999998765


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      .+.......  .         ......|++||.+....++.++|||||||++||+++ |+.|+...............  
T Consensus       151 ~~~~~~~~~--~---------~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~--  217 (256)
T cd05059         151 LDDQYTSSQ--G---------TKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAG--  217 (256)
T ss_pred             ccccccccC--C---------CCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC--
Confidence            322111100  0         011235778888888889999999999999999999 78888644322221111111  


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                            ........    .+..+.+++.+||+.+|++|||+.|+++.|
T Consensus       218 ------~~~~~~~~----~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         218 ------YRLYRPKL----APTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             ------CcCCCCCC----CCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence                  01111112    233489999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.8e-37  Score=347.23  Aligned_cols=265  Identities=17%  Similarity=0.222  Sum_probs=203.1

Q ss_pred             HHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ...++|.+.+.||+|+||.||+|+ ..+|+.||||++...  .......+.+|+..+..++|+||+++++.+...+....
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            345789999999999999999998 567999999998743  23445678899999999999999999887765331111


Q ss_pred             CCCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                      .....+++||||+++|+|.++++... ....+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~---~~IiHrDLKP~NILl~~~~~vkL~  185 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS---KHMIHRDIKSANILLCSNGLVKLG  185 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEeCCCCEEEE
Confidence            11235789999999999999886532 23468899999999999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+++..........          ....+++..|++||.+....++.++|||||||++|||++|+.||.......+..
T Consensus       186 DFGls~~~~~~~~~~~----------~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~  255 (496)
T PTZ00283        186 DFGFSKMYAATVSDDV----------GRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMH  255 (496)
T ss_pred             ecccCeeccccccccc----------cccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            9999976542211100          011346678999999988889999999999999999999999997554322211


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......       .+ .+...    ....+.+++.+||+.||.+||++.+++.+
T Consensus       256 ~~~~~~-------~~-~~~~~----~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        256 KTLAGR-------YD-PLPPS----ISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             HHhcCC-------CC-CCCCC----CCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            111100       01 11122    23448899999999999999999999864

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=5e-37  Score=321.16  Aligned_cols=257  Identities=24%  Similarity=0.347  Sum_probs=195.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|++.+.||+|+||.||+|+.     ..+..||+|.+.... ......+.+|++++++++||||+++++++...     
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----   79 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQE-----   79 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecC-----
Confidence            4677889999999999999974     346789999987432 33446788999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCC
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCP--------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN  579 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~  579 (747)
                         ...++||||+++|+|.+++.....              ...+++...+.++.|++.||.|||+   .+|+||||||+
T Consensus        80 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~  153 (283)
T cd05090          80 ---QPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSS---HFFVHKDLAAR  153 (283)
T ss_pred             ---CceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---cCeehhccccc
Confidence               368999999999999998853211              2347899999999999999999999   78999999999


Q ss_pred             ceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-C
Q 044236          580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-G  658 (747)
Q Consensus       580 NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g  658 (747)
                      |||++.++.+||+|||+++............    .      ...+..|++||.+....++.++|||||||++|||++ |
T Consensus       154 nili~~~~~~kl~dfg~~~~~~~~~~~~~~~----~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g  223 (283)
T cd05090         154 NILIGEQLHVKISDLGLSREIYSADYYRVQP----K------SLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFG  223 (283)
T ss_pred             eEEEcCCCcEEeccccccccccCCcceeccc----C------CCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCC
Confidence            9999999999999999997653322111000    0      112235778888877889999999999999999999 8


Q ss_pred             CCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       659 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      ..|+.......+.+......   .     +.....++    ..+.+++.+||+.||++||++.+|.++|..
T Consensus       224 ~~p~~~~~~~~~~~~~~~~~---~-----~~~~~~~~----~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         224 LQPYYGFSNQEVIEMVRKRQ---L-----LPCSEDCP----PRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             CCCCCCCCHHHHHHHHHcCC---c-----CCCCCCCC----HHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            88876543322222221110   0     01112223    348889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=6.3e-37  Score=317.45  Aligned_cols=259  Identities=17%  Similarity=0.260  Sum_probs=200.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+++.||||.++..   +......+.+|+++++.++||||+++++++...       
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-------   74 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIED-------   74 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEEC-------
Confidence            5788999999999999999984 57899999987642   233345788999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       +..++||||+++|+|.+++.... ....+++.....++.|+++||+|||+   .+|+||||||+||+++.++.++|+||
T Consensus        75 -~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~nil~~~~~~~~l~d~  150 (267)
T cd08228          75 -NELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS---RRVMHRDIKPANVFITATGVVKLGDL  150 (267)
T ss_pred             -CeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCCHHHEEEcCCCCEEECcc
Confidence             37899999999999998875321 13457888999999999999999998   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++..........            ...+...|++||.+....++.++|||||||++|||++|+.|+............
T Consensus       151 g~~~~~~~~~~~~~------------~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~  218 (267)
T cd08228         151 GLGRFFSSKTTAAH------------SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQ  218 (267)
T ss_pred             ccceeccchhHHHh------------cCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHH
Confidence            99876543221110            012344678889888888899999999999999999999888644322211111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ... ...     .+..   ........+.+++.+||+.+|++||++.+|++.|+++
T Consensus       219 ~~~-~~~-----~~~~---~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~  265 (267)
T cd08228         219 KIE-QCD-----YPPL---PTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQM  265 (267)
T ss_pred             HHh-cCC-----CCCC---ChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence            111 000     1111   1123345589999999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-38  Score=294.01  Aligned_cols=276  Identities=15%  Similarity=0.215  Sum_probs=205.9

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|.+.+.+|+|||+.||.++ ..+++.+|+|++...+..+.+...+|++..++++||||+++++++....   .....
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~---~D~~~   96 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREE---KDGKH   96 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhh---ccCce
Confidence            3568899999999999999999 7889999999998777778888999999999999999999999987632   12356


Q ss_pred             eEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      +.||+++|...|+|.+.+.... .+..+++.+.+.|+.+|++||.+||+.. +++.||||||.|||+.+++.+++.|||.
T Consensus        97 ~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~-~~yAH~DiKP~NILls~~~~~vl~D~GS  175 (302)
T KOG2345|consen   97 EAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKE-PPYAHRDIKPANILLSDSGLPVLMDLGS  175 (302)
T ss_pred             eEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccC-CcccccCCCcceeEecCCCceEEEeccC
Confidence            7999999999999999987543 2447999999999999999999999854 4699999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeecc---CCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ---RTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ++.+.-.............+...   .-+.+|.|||++.-.   ..++++|||||||+||+|+.|..||+....    .-
T Consensus       176 ~~~a~i~i~~~~~a~~lQe~a~e---~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~----~G  248 (302)
T KOG2345|consen  176 ATQAPIQIEGSRQALRLQEWAEE---RCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQ----QG  248 (302)
T ss_pred             ccccceEeechHHHHHHHHHHHH---hCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhh----cC
Confidence            86543211100000000000000   114578888888644   457899999999999999999999863211    00


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      .+.     ...+..+.+.-.-....++.+.++++.|++.||.+||++.+++..++..
T Consensus       249 gSl-----aLAv~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  249 GSL-----ALAVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             CeE-----EEeeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence            000     0011111110000111344589999999999999999999999888754

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=2.3e-37  Score=324.38  Aligned_cols=260  Identities=18%  Similarity=0.197  Sum_probs=192.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|.+.+.||+|+||.||+|+. .+++.||+|+++... ......+.+|++++++++||||+++++++...        .
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--------~   76 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTE--------R   76 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCC--------C
Confidence            5688899999999999999984 568999999987433 22345677899999999999999999988653        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++ +|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        77 ~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~DfG~~  150 (288)
T cd07871          77 CLTLVFEYLDS-DLKQYLDNC--GNLMSMHNVKIFMFQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLA  150 (288)
T ss_pred             eEEEEEeCCCc-CHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEECcCcce
Confidence            78999999975 898888653  3357889999999999999999999   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      +.........            ....++..|+|||.+.. ..++.++||||+||++|||+||+.||..... ..+..+..
T Consensus       151 ~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~  218 (288)
T cd07871         151 RAKSVPTKTY------------SNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFR  218 (288)
T ss_pred             eeccCCCccc------------cCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            6533211100            01234567888997754 5688999999999999999999998865432 22222221


Q ss_pred             ccCcCC------------ccccccccccC----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDG------------RRRIVDPVVLT----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~------------~~~~~d~~~~~----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......            ......+....    .........+.+++.+|++.||.+|||+.|+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         219 LLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             HhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            111000            00000010000    001122345789999999999999999999985

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-36  Score=315.51  Aligned_cols=256  Identities=21%  Similarity=0.332  Sum_probs=198.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeC----CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|++.    +...||||.++... ......+.+|+.++++++||||+++++++...      
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~------   77 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKS------   77 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecC------
Confidence            56888999999999999999863    24689999987432 33456788999999999999999999988763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        78 --~~~~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~di~p~nili~~~~~~~l~df  150 (266)
T cd05033          78 --RPVMIITEYMENGSLDKFLREN--DGKFTVGQLVGMLRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDF  150 (266)
T ss_pred             --CceEEEEEcCCCCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCCEEECcc
Confidence              3689999999999999998754  3368999999999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |+++............          ....+..|++||......++.++|||||||++|||++ |..|+...........
T Consensus       151 g~~~~~~~~~~~~~~~----------~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~  220 (266)
T cd05033         151 GLSRRLEDSEATYTTK----------GGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKA  220 (266)
T ss_pred             chhhcccccccceecc----------CCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Confidence            9997764211110000          0112235778888888889999999999999999998 8888864433222221


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ......       .+ ....+    +..+.+++.+||+.+|++||++.||+++|+.+
T Consensus       221 ~~~~~~-------~~-~~~~~----~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         221 VEDGYR-------LP-PPMDC----PSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             HHcCCC-------CC-CCCCC----CHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            111100       00 11122    33488999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.6e-37  Score=315.77  Aligned_cols=254  Identities=22%  Similarity=0.365  Sum_probs=200.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|...+++.||||.++... ...+++.+|++++++++||||+++++++...        +.
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~   75 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLE--------EP   75 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecC--------CC
Confidence            45688899999999999999998778889999987433 3456789999999999999999999988763        36


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++++|.+++.... ...++|..+..++.|++.|+.|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  151 (261)
T cd05068          76 IYIVTELMKYGSLLEYLQGGA-GRALKLPQLIDMAAQVASGMAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             eeeeeecccCCcHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCcceEEEcCCCCEEECCcceEE
Confidence            899999999999999987542 3468999999999999999999999   789999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhh-HHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFL-LNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~-~~~~~~~  676 (747)
                      ..........     .+      ......|++||......++.++|||||||++|||+| |+.|+....... ...+...
T Consensus       152 ~~~~~~~~~~-----~~------~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~  220 (261)
T cd05068         152 VIKEDIYEAR-----EG------AKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQG  220 (261)
T ss_pred             EccCCccccc-----CC------CcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC
Confidence            6542211100     00      011235778898888889999999999999999999 888886543322 2222110


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                         .      ...    .+......+.+++.+||+.+|.+||++.++++.|+.
T Consensus       221 ---~------~~~----~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         221 ---Y------RMP----CPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             ---C------CCC----CCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence               0      000    111223458899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-36  Score=316.44  Aligned_cols=262  Identities=17%  Similarity=0.290  Sum_probs=197.8

Q ss_pred             CCccccccCCCCeeEEEEEeC-C---CcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRLE-N---GTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~-~---g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      |++.+.||+|+||.||+|+.. +   +..||||.++...  ......+.+|++.++.++||||+++++++.....  ...
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~~   78 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASS--LQK   78 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCc--ccc
Confidence            567789999999999999853 2   3789999987432  3345678999999999999999999998876331  112


Q ss_pred             CceEEEEEeccCCCCcccccccCC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENC---PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                      ....++||||+++|+|..++....   ....+++.....++.|++.||+|||+   .+|+||||||+||++++++.+||+
T Consensus        79 ~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~  155 (273)
T cd05035          79 IPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSN---RNFIHRDLAARNCMLREDMTVCVA  155 (273)
T ss_pred             CcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchheEEECCCCeEEEC
Confidence            245799999999999998885421   23468999999999999999999999   789999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~  671 (747)
                      |||+++.+..........          ....+..|++||.+....++.++|||||||++|||++ |..|+.........
T Consensus       156 dfg~~~~~~~~~~~~~~~----------~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~  225 (273)
T cd05035         156 DFGLSKKIYSGDYYRQGR----------IAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIY  225 (273)
T ss_pred             Cccceeeccccccccccc----------cccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            999997654332211100          0011235778888878889999999999999999999 78888654432222


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      .......        .+..    +......+.+++.+||+.||.+|||+.|+++.|+.+
T Consensus       226 ~~~~~~~--------~~~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         226 DYLRHGN--------RLKQ----PEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             HHHHcCC--------CCCC----CcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            2111110        0111    122334588999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.6e-37  Score=333.73  Aligned_cols=267  Identities=16%  Similarity=0.263  Sum_probs=193.6

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+|+ ..+|+.||||+++..  .......+.+|++++++++||||+++++++....   .....
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~---~~~~~   77 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPS---RREFK   77 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccC---CCCCc
Confidence            47788999999999999998 457899999998742  2233456889999999999999999999886532   11124


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++|||||. ++|.+++...   ..+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~-~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kL~Dfg~~  150 (338)
T cd07859          78 DIYVVFELME-SDLHQVIKAN---DDLTPEHHQFFLYQLLRALKYIHT---ANVFHRDLKPKNILANADCKLKICDFGLA  150 (338)
T ss_pred             eEEEEEecCC-CCHHHHHHhc---ccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEccCccc
Confidence            6899999995 6898888653   358999999999999999999999   88999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      +..........         ......++..|+|||++..  ..++.++|||||||++|||+||+.||...... ....+.
T Consensus       151 ~~~~~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~  221 (338)
T cd07859         151 RVAFNDTPTAI---------FWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLIT  221 (338)
T ss_pred             cccccccCccc---------cccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHH
Confidence            75432111100         0011245677899998765  57899999999999999999999998654321 111111


Q ss_pred             hccCcC-----------Ccccc---ccccccCC---CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQD-----------GRRRI---VDPVVLTT---CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~-----------~~~~~---~d~~~~~~---~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......           .....   ..+.....   ..+.....+.+++.+||+.||++|||+.|++++
T Consensus       222 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         222 DLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             HHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            100000           00000   00000000   001123447899999999999999999999965

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.8e-37  Score=345.56  Aligned_cols=252  Identities=16%  Similarity=0.202  Sum_probs=197.6

Q ss_pred             CCCccccccCCCCeeEEEEEe-CC-CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-EN-GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~-g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .|.+.+.||+|+||.||+|.. .+ ++.||+|.+..........+.+|+.+++.++|||||+++++|...        +.
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~--------~~  139 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSD--------DK  139 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEEC--------CE
Confidence            378889999999999999974 34 678899987655555556778899999999999999999999773        48


Q ss_pred             EEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      .++||||+++|+|.++++.. ....++++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus       140 ~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~~~~~~kL~DFgla  216 (478)
T PTZ00267        140 LLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHS---RKMMHRDLKSANIFLMPTGIIKLGDFGFS  216 (478)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCcCHHhEEECCCCcEEEEeCcCc
Confidence            99999999999999887642 224468899999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      +..........          ....+++..|++||.+....++.++|||||||++|||++|+.||.......+.......
T Consensus       217 ~~~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~  286 (478)
T PTZ00267        217 KQYSDSVSLDV----------ASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYG  286 (478)
T ss_pred             eecCCcccccc----------ccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhC
Confidence            76543211100          01134677899999998889999999999999999999999998754332221111111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ..       + .....+    ...+.+++.+||+.||++||++.+++.
T Consensus       287 ~~-------~-~~~~~~----s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        287 KY-------D-PFPCPV----SSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             CC-------C-CCCccC----CHHHHHHHHHHhccChhhCcCHHHHHh
Confidence            00       0 011122    334889999999999999999999975

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=6.5e-37  Score=319.60  Aligned_cols=260  Identities=20%  Similarity=0.288  Sum_probs=201.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCc----EEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGT----YVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      .++|+..+.||+|+||.||+|++ .+|+    .||+|.++... ....+.+.+|+.+++.++||||++++++|...    
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~----   81 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS----   81 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC----
Confidence            35688899999999999999984 4554    48999987432 33456788999999999999999999998652    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                           ..+++|||+++|+|.++++..  ...+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.+||+
T Consensus        82 -----~~~l~~~~~~~g~l~~~l~~~--~~~~~~~~~~~~~~qi~~~L~~lH~---~~iiH~dlkp~Nil~~~~~~~kL~  151 (279)
T cd05109          82 -----TVQLVTQLMPYGCLLDYVREN--KDRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKIT  151 (279)
T ss_pred             -----CcEEEEEcCCCCCHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccceEEEcCCCcEEEC
Confidence                 468999999999999998754  3458999999999999999999999   889999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~  671 (747)
                      |||+++............          .......|++||......++.++|||||||++|||++ |..|+.........
T Consensus       152 dfG~~~~~~~~~~~~~~~----------~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~  221 (279)
T cd05109         152 DFGLARLLDIDETEYHAD----------GGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIP  221 (279)
T ss_pred             CCCceeecccccceeecC----------CCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence            999997664322111100          0011235778888888889999999999999999998 88888754443333


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ........        +.....+    ...+.+++.+||+.||++||++.+++..|+.+.+..
T Consensus       222 ~~~~~~~~--------~~~~~~~----~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         222 DLLEKGER--------LPQPPIC----TIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             HHHHCCCc--------CCCCccC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcCC
Confidence            32221110        0011122    334889999999999999999999999998876654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1e-36  Score=316.80  Aligned_cols=261  Identities=19%  Similarity=0.315  Sum_probs=194.6

Q ss_pred             CccccccCCCCeeEEEEEeCC-Cc--EEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          443 DSLSFMGEGSRGKLYKGRLEN-GT--YVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~~~-g~--~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .+.+.||+|+||.||+|+... +.  .||||.++..  .....+.+.+|++++++++||||++++++|.....  .....
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~~~~   79 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVE--SEGYP   79 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCc--ccCCC
Confidence            456789999999999998643 33  5899988643  24446788999999999999999999998865321  11234


Q ss_pred             eEEEEEeccCCCCcccccccC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          518 KVFLVYEYIPNGSYRAHLSEN---CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      ..++||||+++|+|.+++...   .....++|.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhheEEcCCCCEEECCC
Confidence            679999999999999877422   123458999999999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |+++.+........ +     .    .......|++||......++.++|||||||++|||++ |+.|+...........
T Consensus       157 g~~~~~~~~~~~~~-~-----~----~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~  226 (272)
T cd05075         157 GLSKKIYNGDYYRQ-G-----R----IAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDY  226 (272)
T ss_pred             CcccccCcccceec-C-----C----cccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence            99976543221100 0     0    0112335778888888889999999999999999999 7888865433222221


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ....   ..     +.....+    ...+.+++.+||+.+|++|||+.+++++|+.+
T Consensus       227 ~~~~---~~-----~~~~~~~----~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         227 LRQG---NR-----LKQPPDC----LDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             HHcC---CC-----CCCCCCC----CHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            1111   00     0011122    33488999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=8.5e-37  Score=325.42  Aligned_cols=240  Identities=20%  Similarity=0.303  Sum_probs=188.6

Q ss_pred             ccccCCCCeeEEEEEe----CCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          446 SFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +.||+|+||.||+++.    .+++.||||+++...    ......+.+|+++|+.++||||+++++++...        .
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~--------~   73 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTG--------G   73 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecC--------C
Confidence            5799999999999984    357899999997432    22335678899999999999999999998763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++...   ..+.+..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  147 (323)
T cd05584          74 KLYLILEYLSGGELFMHLERE---GIFMEDTACFYLSEISLALEHLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLC  147 (323)
T ss_pred             eEEEEEeCCCCchHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEeeCcCC
Confidence            789999999999999998753   457888888999999999999999   88999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~  676 (747)
                      +.........            ....++..|+|||.+....++.++|||||||++|||++|+.||....... ...+.. 
T Consensus       148 ~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~-  214 (323)
T cd05584         148 KESIHEGTVT------------HTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILK-  214 (323)
T ss_pred             eecccCCCcc------------cccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHc-
Confidence            6432211100            01245678899999988889999999999999999999999987544322 111111 


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      .         ...+    +......+.+++.+||+.+|++||     ++.+++.
T Consensus       215 ~---------~~~~----~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         215 G---------KLNL----PPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             C---------CCCC----CCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence            0         0111    112233488999999999999999     7888765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=6.4e-37  Score=333.93  Aligned_cols=262  Identities=20%  Similarity=0.242  Sum_probs=194.5

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .|..++.||+|+||+||+|+ ..+++.||||++....   ....+.+.+|++++++++|||||++++++.+.        
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~--------   73 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDK--------   73 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecC--------
Confidence            57889999999999999998 4668999999997432   23456788999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~aL~~LH~---~givHrDlKp~Nili~~~~~~kL~DFGl  147 (381)
T cd05626          74 DNLYFVMDYIPGGDMMSLLIRM---EVFPEVLARFYIAELTLAIESVHK---MGFIHRDIKPDNILIDLDGHIKLTDFGL  147 (381)
T ss_pred             CEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCcHHHEEECCCCCEEEeeCcC
Confidence            4799999999999999998753   458888899999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcc--cC-------C-------------------------C-CCcccccceeeecCCcceeeeeeccCCCc
Q 044236          597 SIIMEEHEKLEA--KG-------E-------------------------G-PKARYGFLFICRTSAENVVIVVDIQRTKL  641 (747)
Q Consensus       597 a~~~~~~~~~~~--~~-------~-------------------------~-~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  641 (747)
                      ++..........  .+       .                         . ...........++..|+|||.+....++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~  227 (381)
T cd05626         148 CTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQ  227 (381)
T ss_pred             CcccccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCC
Confidence            864321100000  00       0                         0 00000001235788999999998888999


Q ss_pred             CCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhH--ccCCCCCCCC
Q 044236          642 EDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNK--CICPEPSSRP  718 (747)
Q Consensus       642 k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~--Cl~~dP~~RP  718 (747)
                      ++|||||||++|||+||+.||....... ...+.....   ....  |. ...++++    +.+++.+  |+..+|.+||
T Consensus       228 ~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~~~---~~~~--~~-~~~~s~~----~~dli~~ll~~~~~~~~R~  297 (381)
T cd05626         228 LCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWEN---TLHI--PP-QVKLSPE----AVDLITKLCCSAEERLGRN  297 (381)
T ss_pred             ccceeehhhHHHHHHhCCCCCcCCCHHHHHHHHHcccc---ccCC--CC-CCCCCHH----HHHHHHHHccCcccccCCC
Confidence            9999999999999999999997544322 111211100   0000  00 0122333    5666666  6677777899


Q ss_pred             CHHHHHHH
Q 044236          719 SFEDVLWN  726 (747)
Q Consensus       719 s~~evl~~  726 (747)
                      ++.|++.+
T Consensus       298 ~~~~~l~h  305 (381)
T cd05626         298 GADDIKAH  305 (381)
T ss_pred             CHHHHhcC
Confidence            99999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=343.77  Aligned_cols=274  Identities=17%  Similarity=0.195  Sum_probs=206.0

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCC-cEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeee-eeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENG-TYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGH-CIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g-~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~-~~~~~~~~~~~~  516 (747)
                      .+..+.+.|.+|||+.||.|+...+ ..+|+|++-..++...+.+.+||++|++|+ |||||.+++. .....  .....
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~--~~~~~  114 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRS--SNNGV  114 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEecccccccc--CCCce
Confidence            3456778899999999999996554 999999998778888899999999999997 9999999993 33321  11113


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      .+++|.||||++|.|-+++..+.. ..|++.++++|+.|+++|+++||... ++|||||||-+||||+.++..||||||.
T Consensus       115 ~EvllLmEyC~gg~Lvd~mn~Rlq-~~lte~eVLkIf~dv~~AVa~mH~~~-pPiIHRDLKiENvLls~~g~~KLCDFGS  192 (738)
T KOG1989|consen  115 WEVLLLMEYCKGGSLVDFMNTRLQ-TRLTEDEVLKIFYDVCEAVAAMHYLK-PPIIHRDLKIENVLLSADGNYKLCDFGS  192 (738)
T ss_pred             eEEEeehhhccCCcHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHhcCC-CccchhhhhhhheEEcCCCCEEeCcccc
Confidence            589999999999999999986533 34999999999999999999999754 6899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      |...-..............   ......|+.|.+||.++   +...++|+||||+||+||-|+....||++....     
T Consensus       193 att~~~~~~~~~e~~~ve~---eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~l-----  264 (738)
T KOG1989|consen  193 ATTKILSPTSAQEVNYVEE---EIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKL-----  264 (738)
T ss_pred             cccccCCCccHHHHHHHHH---HHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcce-----
Confidence            8432111100000000000   00112245677777664   556899999999999999999999999865321     


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQA  735 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  735 (747)
                                .+++..+.-.-.+.....+.+||..||++||.+||++.||+..+..++...+
T Consensus       265 ----------aIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~  316 (738)
T KOG1989|consen  265 ----------AILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPC  316 (738)
T ss_pred             ----------eEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCC
Confidence                      1111111111124566779999999999999999999999998887766544

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=4.9e-37  Score=322.40  Aligned_cols=265  Identities=20%  Similarity=0.274  Sum_probs=193.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-C-CCcEEEEEEeeccc--hhcHHHHHHHHHHHhcC---CCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-E-NGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKL---QHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~-~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l---~H~nIv~l~g~~~~~~~~~  512 (747)
                      ++|++.+.||+|+||.||+|+. . +++.||||+++...  ......+.+|+.+++.+   +||||++++++|....   
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~---   77 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR---   77 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEeccc---
Confidence            3688899999999999999985 3 47889999987432  22234566777777665   6999999999986422   


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                      .......++||||++ ++|.+++... ....+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+
T Consensus        78 ~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~i~~qi~~aL~~lH~---~~iiH~dlkp~Nil~~~~~~~kl~  152 (290)
T cd07862          78 TDRETKLTLVFEHVD-QDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLA  152 (290)
T ss_pred             CCCCCcEEEEEccCC-CCHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEcCCCCEEEc
Confidence            112346899999996 5898888653 23458999999999999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~  671 (747)
                      |||+++........             ....++..|+|||.+....++.++|||||||++|||++|++||.... .+.+.
T Consensus       153 Dfg~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~  219 (290)
T cd07862         153 DFGLARIYSFQMAL-------------TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLG  219 (290)
T ss_pred             cccceEeccCCccc-------------ccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHH
Confidence            99999754322110             01235667889999888889999999999999999999999887543 23333


Q ss_pred             HHHhccCcCCcc----------ccccccc---cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          672 EMASFGSQDGRR----------RIVDPVV---LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       672 ~~~~~~~~~~~~----------~~~d~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .+..........          ....+..   .....+.....+.+++.+|++.||++|||+.|+++
T Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         220 KILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             HHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence            332211100000          0000000   00011123345789999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-37  Score=317.48  Aligned_cols=270  Identities=18%  Similarity=0.292  Sum_probs=200.8

Q ss_pred             CCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhc--CCCCCcceeeeeeeccCCCCCCCCce
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK--LQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~--l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ..+..++||+|+||.||||++. ++.||||++..   ++.+.|.+|-+|.+.  ++|+||++|+++-....    ....+
T Consensus       211 pl~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t----~~~~e  282 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQLD-NRLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGT----ADRME  282 (534)
T ss_pred             chhhHHHhhcCccceeehhhcc-CceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhhchhccCC----ccccc
Confidence            3455678999999999999985 48999999974   445678888888765  68999999998765422    12458


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------CCCcccCCCCCCceeecCCCcEEEe
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV------ISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                      ++||+||.++|+|.+||..    ..++|....+|+.-+++||+|||+..      .++|+|||||++|||+.+|+++.|+
T Consensus       283 ywLVt~fh~kGsL~dyL~~----ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIa  358 (534)
T KOG3653|consen  283 YWLVTEFHPKGSLCDYLKA----NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIA  358 (534)
T ss_pred             eeEEeeeccCCcHHHHHHh----ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEee
Confidence            9999999999999999985    46999999999999999999999743      3679999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC-CC-----cCCceeehhHHHHHHhhCCCCC--CC
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR-TK-----LEDDVYNFGFILLESLVGPIVT--GK  664 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~s-----~k~DVwSfGvvl~Elltg~~p~--~~  664 (747)
                      |||+|..+.......       ...+   -.||..|||||++.+.- +.     .+.||||+|.|||||+++-...  +.
T Consensus       359 DFGLAl~~~p~~~~~-------d~~~---qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~  428 (534)
T KOG3653|consen  359 DFGLALRLEPGKPQG-------DTHG---QVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGP  428 (534)
T ss_pred             ccceeEEecCCCCCc-------chhh---hhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence            999997765322111       1111   35788899999987542 22     3679999999999999973322  21


Q ss_pred             Chhh------------hHHHHHhccCcCCccccccccccCCC-CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          665 GEAF------------LLNEMASFGSQDGRRRIVDPVVLTTC-SQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       665 ~~~~------------~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      .+.+            .+.++......++.+    |.++..+ ....+..+.+.+..||+.||+.|-|+.=|.+++.++.
T Consensus       429 vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~R----P~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~  504 (534)
T KOG3653|consen  429 VPEYQLPFEAEVGNHPTLEEMQELVVRKKQR----PKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELM  504 (534)
T ss_pred             CCcccCchhHHhcCCCCHHHHHHHHHhhccC----CCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHh
Confidence            1111            122333332222222    2222211 1134566889999999999999999999999988887


Q ss_pred             HHhhh
Q 044236          732 QVQAT  736 (747)
Q Consensus       732 ~~~~~  736 (747)
                      +..+.
T Consensus       505 ~~~~~  509 (534)
T KOG3653|consen  505 MLWED  509 (534)
T ss_pred             ccCCc
Confidence            76654

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=1e-36  Score=321.92  Aligned_cols=265  Identities=24%  Similarity=0.345  Sum_probs=199.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCc--EEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGT--YVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~--~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||.||+|+. .++.  .+|+|.++.. .......+.+|++++.++ +||||+++++++...     
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~-----   80 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-----   80 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCC-----
Confidence            35788889999999999999985 3454  4577777642 233456788999999999 899999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCc
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNN  580 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~N  580 (747)
                         ...++||||+++|+|.++++...             ....+++.+++.++.|++.||+|||+   .+|+||||||+|
T Consensus        81 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dlkp~N  154 (303)
T cd05088          81 ---GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARN  154 (303)
T ss_pred             ---CCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh---CCccccccchhe
Confidence               36899999999999999986432             12358899999999999999999998   899999999999


Q ss_pred             eeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CC
Q 044236          581 ILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GP  659 (747)
Q Consensus       581 ILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~  659 (747)
                      ||++.++.+||+|||+++.......   .      ..    ...+..|++||......++.++|||||||++|||+| |.
T Consensus       155 ili~~~~~~kl~dfg~~~~~~~~~~---~------~~----~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~  221 (303)
T cd05088         155 ILVGENYVAKIADFGLSRGQEVYVK---K------TM----GRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGG  221 (303)
T ss_pred             EEecCCCcEEeCccccCcccchhhh---c------cc----CCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCC
Confidence            9999999999999999853221100   0      00    011235778888877788999999999999999998 88


Q ss_pred             CCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhhccc
Q 044236          660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATADA  739 (747)
Q Consensus       660 ~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~~~~  739 (747)
                      .||...............        .....    +......+.+++.+||+.+|++||++.+++.+|+.+.+.......
T Consensus       222 ~p~~~~~~~~~~~~~~~~--------~~~~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~~~~~  289 (303)
T cd05088         222 TPYCGMTCAELYEKLPQG--------YRLEK----PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVN  289 (303)
T ss_pred             CCcccCChHHHHHHHhcC--------CcCCC----CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhhhhhh
Confidence            888644332222111100        00001    111223478999999999999999999999999887776654443

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=3.8e-37  Score=317.91  Aligned_cols=255  Identities=23%  Similarity=0.361  Sum_probs=202.2

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ...+|+..+.||+|+||.||+|...+++.+|+|.+..........+..|+.+++.++||||+++++++...        .
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~   75 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVG--------E   75 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecC--------C
Confidence            34678889999999999999999877999999999866555567889999999999999999999998763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++.... ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH~---~~i~h~dl~~~nilv~~~~~~kl~d~g~~  151 (261)
T cd05148          76 PVYIITELMEKGSLLAFLRSPE-GQVLPVASLIDMACQVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLA  151 (261)
T ss_pred             CeEEEEeecccCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccCcceEEEcCCceEEEccccch
Confidence            6899999999999999997642 3468999999999999999999998   78999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh-hHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF-LLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~-~~~~~~~  675 (747)
                      ...........      .      ...+..|.+||......++.++|||||||++|||++ |+.|+...... ....+..
T Consensus       152 ~~~~~~~~~~~------~------~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~  219 (261)
T cd05148         152 RLIKEDVYLSS------D------KKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITA  219 (261)
T ss_pred             hhcCCcccccc------C------CCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHh
Confidence            76533211110      0      011234677887777788999999999999999998 78888654322 2222211


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                       .   .     .+..    +...+..+.+++.+||+.||.+|||+.++++.|+.
T Consensus       220 -~---~-----~~~~----~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         220 -G---Y-----RMPC----PAKCPQEIYKIMLECWAAEPEDRPSFKALREELDN  260 (261)
T ss_pred             -C---C-----cCCC----CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence             0   0     0111    11223348899999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1e-36  Score=320.42  Aligned_cols=260  Identities=20%  Similarity=0.322  Sum_probs=199.8

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESG  509 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~  509 (747)
                      ..++|+..+.||+|+||.||+|...      ....+|+|.+.... ......+.+|+++++++ +|+||++++++|... 
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~-   88 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE-   88 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC-
Confidence            3456888999999999999999853      23689999987432 23446688999999999 899999999998763 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccC-------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSEN-------------CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~-------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                             ...++||||+++|+|.++++..             .....++|..++.++.|++.||+|||+   .+|+||||
T Consensus        89 -------~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~dl  158 (293)
T cd05053          89 -------GPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS---KKCIHRDL  158 (293)
T ss_pred             -------CCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCcccccc
Confidence                   3689999999999999998642             123468999999999999999999998   89999999


Q ss_pred             CCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHh
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ell  656 (747)
                      ||+||+++.++.+||+|||+++.+........... .         .....|++||.+....++.++|||||||++||++
T Consensus       159 kp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~-~---------~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~  228 (293)
T cd05053         159 AARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTN-G---------RLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIF  228 (293)
T ss_pred             ceeeEEEcCCCeEEeCccccccccccccceeccCC-C---------CCCccccCHHHhccCCcCcccceeehhhHHHHHh
Confidence            99999999999999999999976543221111100 0         0123577888888888999999999999999999


Q ss_pred             h-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          657 V-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       657 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      + |..|+................        .+    ..+......+.+++.+||..+|++|||+.|+++.|+.+
T Consensus       229 ~~g~~p~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~  291 (293)
T cd05053         229 TLGGSPYPGIPVEELFKLLKEGY--------RM----EKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM  291 (293)
T ss_pred             cCCCCCCCCCCHHHHHHHHHcCC--------cC----CCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence            8 888876544332222211110        00    11122234588999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=1.2e-36  Score=320.52  Aligned_cols=259  Identities=22%  Similarity=0.330  Sum_probs=197.1

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCc--EEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGT--YVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|+.. ++.  .+|+|.++.. .....+.+.+|+++++++ +||||+++++++...      
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~------   75 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENR------   75 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccC------
Confidence            46888899999999999999864 343  4788888742 233456789999999999 799999999988763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                        ...++||||+++|+|.++++...             ....+++..+..++.|++.||+|||+   .+|+||||||+||
T Consensus        76 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Ni  150 (297)
T cd05089          76 --GYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE---KQFIHRDLAARNV  150 (297)
T ss_pred             --CcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCcCCcceE
Confidence              36899999999999999986431             11358899999999999999999998   8999999999999


Q ss_pred             eecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCC
Q 044236          582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPI  660 (747)
Q Consensus       582 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~  660 (747)
                      |++.++.+||+|||++..........         .    ......|++||......++.++|||||||++|||++ |..
T Consensus       151 ll~~~~~~kl~dfg~~~~~~~~~~~~---------~----~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~  217 (297)
T cd05089         151 LVGENLASKIADFGLSRGEEVYVKKT---------M----GRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGT  217 (297)
T ss_pred             EECCCCeEEECCcCCCccccceeccC---------C----CCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCC
Confidence            99999999999999985322110000         0    011234778888888889999999999999999998 888


Q ss_pred             CCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ||.............   ..     ..+.....+    ...+.+++.+||+.+|.+||++.+++++|+.+.+..
T Consensus       218 pf~~~~~~~~~~~~~---~~-----~~~~~~~~~----~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~  279 (297)
T cd05089         218 PYCGMTCAELYEKLP---QG-----YRMEKPRNC----DDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR  279 (297)
T ss_pred             CCCCCCHHHHHHHHh---cC-----CCCCCCCCC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence            886544332211111   00     001111122    334889999999999999999999999998876644

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-39  Score=299.91  Aligned_cols=252  Identities=21%  Similarity=0.282  Sum_probs=200.6

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++.|++-+.||+|.|+.||++. .++|+.+|+|.+...  ...+.+++.+|+.|-+.|+|||||+|...+.+.       
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~-------   82 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE-------   82 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhccc-------
Confidence            4567778899999999999997 567999999988643  234678899999999999999999999877653       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec---CCCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD---EHRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl~  592 (747)
                       ...|||+|+|.||+|..-|-.+   ...++..+-.++.||++||.|+|.   .+|||||+||+|+|+-   ..--+|++
T Consensus        83 -~~~ylvFe~m~G~dl~~eIV~R---~~ySEa~aSH~~rQiLeal~yCH~---n~IvHRDvkP~nllLASK~~~A~vKL~  155 (355)
T KOG0033|consen   83 -SFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILEALAYCHS---NGIVHRDLKPENLLLASKAKGAAVKLA  155 (355)
T ss_pred             -ceeEEEEecccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeeeeccCCCceeec
Confidence             4789999999999998766542   456778888999999999999999   8999999999999994   34568999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+|..+.+..          .+.|   ..|++.+++||++...+|+..+|||+.|||||-|+.|.+||.+.+...+.+
T Consensus       156 ~FGvAi~l~~g~----------~~~G---~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye  222 (355)
T KOG0033|consen  156 DFGLAIEVNDGE----------AWHG---FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYE  222 (355)
T ss_pred             ccceEEEeCCcc----------cccc---ccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHH
Confidence            999997665211          1222   467889999999999999999999999999999999999988755444333


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      -+..+..+     ++++.++..++    +..+|+.+++..||.+|.|+.|.++.
T Consensus       223 ~I~~g~yd-----~~~~~w~~is~----~Ak~LvrrML~~dP~kRIta~EAL~H  267 (355)
T KOG0033|consen  223 QIKAGAYD-----YPSPEWDTVTP----EAKSLIRRMLTVNPKKRITADEALKH  267 (355)
T ss_pred             HHhccccC-----CCCcccCcCCH----HHHHHHHHHhccChhhhccHHHHhCC
Confidence            32222211     23323333344    47889999999999999999999853

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=9.8e-37  Score=313.15  Aligned_cols=248  Identities=24%  Similarity=0.386  Sum_probs=191.3

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      +.||+|+||.||+|+. .+++.||+|.+.... ......+.+|++++++++||||++++++|...        ...++||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~~~lv~   72 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK--------QPIYIVM   72 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCC--------CCeEEEE
Confidence            3689999999999985 578999999876432 33446789999999999999999999998763        3689999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++++|.++++..  ...++|..++.++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.....
T Consensus        73 e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  147 (252)
T cd05084          73 ELVQGGDFLTFLRTE--GPRLKVKELIQMVENAAAGMEYLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDG  147 (252)
T ss_pred             eeccCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEEcCCCcEEECccccCcccccc
Confidence            999999999998753  3458999999999999999999998   78999999999999999999999999998654321


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCcCCc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQDGR  682 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~  682 (747)
                      ..... ..     .    ......|++||.+....++.++|||||||++|||++ |..|+................    
T Consensus       148 ~~~~~-~~-----~----~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~----  213 (252)
T cd05084         148 VYAST-GG-----M----KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGV----  213 (252)
T ss_pred             ccccc-CC-----C----CCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCC----
Confidence            11000 00     0    011234778898888889999999999999999998 788886433322222111100    


Q ss_pred             cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       683 ~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                          ..    ..+...+..+.+++.+||+.+|++|||+.|+.++|+
T Consensus       214 ----~~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         214 ----RL----PCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             ----CC----CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence                00    111222345889999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-37  Score=329.55  Aligned_cols=250  Identities=22%  Similarity=0.331  Sum_probs=199.7

Q ss_pred             ccccccCCCCeeEEEEEeCC--C--cEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          444 SLSFMGEGSRGKLYKGRLEN--G--TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~--g--~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ..++||+|.||.|++|.|..  |  ..||||.++..... ...+|.+|+.+|.+|+|||+|+|||+..+.         .
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~q---------p  184 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQ---------P  184 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccc---------h
Confidence            45779999999999998743  4  46899999865433 678999999999999999999999998752         5


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      ..+|||+++.|+|.+.|++ .....|-......++.|||.||.||.+   +++|||||..+|+|+-..-.+||+||||.|
T Consensus       185 ~mMV~ELaplGSLldrLrk-a~~~~llv~~Lcdya~QiA~aM~YLes---krlvHRDLAARNlllasprtVKI~DFGLmR  260 (1039)
T KOG0199|consen  185 AMMVFELAPLGSLLDRLRK-AKKAILLVSRLCDYAMQIAKAMQYLES---KRLVHRDLAARNLLLASPRTVKICDFGLMR  260 (1039)
T ss_pred             hhHHhhhcccchHHHHHhh-ccccceeHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhheecccceeeeeccccee
Confidence            7899999999999999987 345567788889999999999999999   889999999999999999999999999998


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~~~~~~  677 (747)
                      -+...+.........+  .       ..+|.|||.+....|+.++|||+|||++|||+|+ ..||..-...++.+.+.  
T Consensus       261 aLg~ned~Yvm~p~rk--v-------PfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD--  329 (1039)
T KOG0199|consen  261 ALGENEDMYVMAPQRK--V-------PFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNID--  329 (1039)
T ss_pred             ccCCCCcceEecCCCc--C-------cccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhcc--
Confidence            8765544332211111  0       1257788999999999999999999999999996 88887654443332211  


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                         ...++..       +..+++.++++|+.||+.+|.+||||..|.+++
T Consensus       330 ---~~erLpR-------Pk~csedIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  330 ---AGERLPR-------PKYCSEDIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             ---ccccCCC-------CCCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence               1112222       344555699999999999999999999998554

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.7e-37  Score=324.20  Aligned_cols=253  Identities=20%  Similarity=0.286  Sum_probs=207.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|..++++|+|+||.++..+. .++..+++|.+...+  ....+...+|+.++++++|||||.+++.++..+      
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~------   76 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDG------   76 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCC------
Confidence            35788899999999999999984 457899999998543  334457788999999999999999999988743      


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...+|||+||+||++.+.|.+.. +..++......++.|++.|+.|||+   ..|+|||||+.||++..+..+||+|||
T Consensus        77 -~~l~Ivm~Y~eGg~l~~~i~~~k-~~~f~E~~i~~~~~Q~~~av~ylH~---~~iLHRDlK~~Nifltk~~~VkLgDfG  151 (426)
T KOG0589|consen   77 -QLLCIVMEYCEGGDLAQLIKEQK-GVLFPEERILKWFVQILLAVNYLHE---NRVLHRDLKCANIFLTKDKKVKLGDFG  151 (426)
T ss_pred             -ceEEEEEeecCCCCHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHh---hhhhcccchhhhhhccccCceeecchh
Confidence             34899999999999999997653 4568888899999999999999998   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~  674 (747)
                      +|+.+........            ...|++.|+.||++....|..|+||||+||++|||++-+++|...+...+ .++.
T Consensus       152 laK~l~~~~~~a~------------tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~  219 (426)
T KOG0589|consen  152 LAKILNPEDSLAS------------TVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKIN  219 (426)
T ss_pred             hhhhcCCchhhhh------------eecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHh
Confidence            9998876542211            24678899999999999999999999999999999999999986654332 2222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ..        ...|     .+.....++..++..|+..+|+.||++.+++.+-
T Consensus       220 ~~--------~~~P-----lp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~P  259 (426)
T KOG0589|consen  220 RG--------LYSP-----LPSMYSSELRSLVKSMLRKNPEHRPSALELLRRP  259 (426)
T ss_pred             hc--------cCCC-----CCccccHHHHHHHHHHhhcCCccCCCHHHHhhCh
Confidence            11        1111     2333445588999999999999999999999763

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=8.4e-37  Score=318.38  Aligned_cols=258  Identities=17%  Similarity=0.232  Sum_probs=196.6

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      ..++|++.+.||+|+||.||+|...      .+..||||++.... .....++.+|+.+++.++||||+++++++...  
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~--   81 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG--   81 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC--
Confidence            4567999999999999999999742      35679999986432 23445788999999999999999999998653  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCC-------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL  583 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  583 (747)
                            ...++||||+++|+|.++++....       ...++|..+..++.|++.||+|||+   .+++||||||+||++
T Consensus        82 ------~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~vH~dlkp~Nil~  152 (277)
T cd05062          82 ------QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMV  152 (277)
T ss_pred             ------CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCcchheEEE
Confidence                  378999999999999999864321       2346888999999999999999999   789999999999999


Q ss_pred             cCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCC
Q 044236          584 DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVT  662 (747)
Q Consensus       584 d~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~  662 (747)
                      +.++.+||+|||+++............   .       ...+..|++||.+....++.++|||||||++|||++ |..|+
T Consensus       153 ~~~~~~~l~dfg~~~~~~~~~~~~~~~---~-------~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~  222 (277)
T cd05062         153 AEDFTVKIGDFGMTRDIYETDYYRKGG---K-------GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY  222 (277)
T ss_pred             cCCCCEEECCCCCccccCCcceeecCC---C-------CccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999987543221111000   0       012345788998888889999999999999999999 67787


Q ss_pred             CCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ...............   ...     ..    +......+.+++.+||+.+|++|||+.|++++|+
T Consensus       223 ~~~~~~~~~~~~~~~---~~~-----~~----~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         223 QGMSNEQVLRFVMEG---GLL-----DK----PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             CCCCHHHHHHHHHcC---CcC-----CC----CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence            654333222211111   100     01    1122335889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-37  Score=296.05  Aligned_cols=253  Identities=21%  Similarity=0.305  Sum_probs=205.2

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc-----h---hcHHHHHHHHHHHhcC-CCCCcceeeeeeec
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK-----K---YSIQNLKVRLDFLSKL-QHPHLVSLLGHCIE  507 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~-----~---~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~  507 (747)
                      ..+.|...+.+|+|..+.|-++. .++|...|+|++....     .   .-.+...+|+.+|+++ .||+|+++.++|..
T Consensus        15 fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes   94 (411)
T KOG0599|consen   15 FYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYES   94 (411)
T ss_pred             HHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccC
Confidence            34567778899999999999987 5678999999986421     1   1234567899999998 59999999999977


Q ss_pred             cCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       508 ~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                      .        ..+++|+|.|+.|.|+++|..   ...+++.+..+|+.|+..|++|||.   ..||||||||+|||+|++.
T Consensus        95 ~--------sF~FlVFdl~prGELFDyLts---~VtlSEK~tR~iMrqlfegVeylHa---~~IVHRDLKpENILlddn~  160 (411)
T KOG0599|consen   95 D--------AFVFLVFDLMPRGELFDYLTS---KVTLSEKETRRIMRQLFEGVEYLHA---RNIVHRDLKPENILLDDNM  160 (411)
T ss_pred             c--------chhhhhhhhcccchHHHHhhh---heeecHHHHHHHHHHHHHHHHHHHH---hhhhhcccChhheeecccc
Confidence            4        378999999999999999975   4568999999999999999999999   8899999999999999999


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec------cCCCcCCceeehhHHHHHHhhCCCC
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI------QRTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------~~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                      ++||+|||+|+.++..+....             .||++.|.|||.+..      ..|+..+|+||+|||||.|+.|.+|
T Consensus       161 ~i~isDFGFa~~l~~GekLre-------------lCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpP  227 (411)
T KOG0599|consen  161 NIKISDFGFACQLEPGEKLRE-------------LCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPP  227 (411)
T ss_pred             ceEEeccceeeccCCchhHHH-------------hcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCc
Confidence            999999999998887665433             577888888888754      3578899999999999999999999


Q ss_pred             CCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      |.......+..++..+...-.    .|     ...+.+..+.+|+.+|++.||.+|.|++|++++
T Consensus       228 FwHRkQmlMLR~ImeGkyqF~----sp-----eWadis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  228 FWHRKQMLMLRMIMEGKYQFR----SP-----EWADISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             hhHHHHHHHHHHHHhcccccC----Cc-----chhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence            876555544444443322211    11     123344558999999999999999999999864

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=7.8e-37  Score=325.95  Aligned_cols=243  Identities=21%  Similarity=0.283  Sum_probs=188.4

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHH---hcCCCCCcceeeeeeeccCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFL---SKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l---~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      |++.+.||+|+||.||+|+. .+|+.||||+++...   ....+.+.+|++++   +.++||||+++++++...      
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~------   74 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTE------   74 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcC------
Confidence            56788999999999999984 568999999997432   22345566666554   577899999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|..+++.    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        75 --~~~~lv~E~~~~~~L~~~~~~----~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrdlkp~Nill~~~~~~kL~Df  145 (324)
T cd05589          75 --DHVCFVMEYAAGGDLMMHIHT----DVFSEPRAVFYAACVVLGLQYLHE---NKIVYRDLKLDNLLLDTEGFVKIADF  145 (324)
T ss_pred             --CEEEEEEcCCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCcEEeCcc
Confidence              479999999999999988763    358999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~  673 (747)
                      |+++........            ....+++..|++||.+....++.++|||||||++|||++|+.||........ ..+
T Consensus       146 g~~~~~~~~~~~------------~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i  213 (324)
T cd05589         146 GLCKEGMGFGDR------------TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSI  213 (324)
T ss_pred             cCCccCCCCCCc------------ccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            998643211110            0113456788999999888899999999999999999999999975543322 211


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      .. .         .+..+..+    ...+.+++.+||+.||.+||     ++.++++
T Consensus       214 ~~-~---------~~~~p~~~----~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         214 VN-D---------EVRYPRFL----SREAISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             Hh-C---------CCCCCCCC----CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence            11 0         01111222    33478899999999999999     5666655

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.2e-36  Score=313.47  Aligned_cols=248  Identities=20%  Similarity=0.276  Sum_probs=192.3

Q ss_pred             cccCCCCeeEEEEEe---CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          447 FMGEGSRGKLYKGRL---ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      .||+|+||.||+|.+   .++..+|+|+++...  ....+++.+|+.++++++||||++++|++..         ...++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---------~~~~l   72 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA---------ESWML   72 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC---------CCcEE
Confidence            589999999999964   357899999987432  2345678999999999999999999998753         25689


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      ||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.+.
T Consensus        73 v~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~  146 (257)
T cd05116          73 VMELAELGPLNKFLQKN---KHVTEKNITELVHQVSMGMKYLEE---TNFVHRDLAARNVLLVTQHYAKISDFGLSKALG  146 (257)
T ss_pred             EEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchhhEEEcCCCeEEECCCccccccC
Confidence            99999999999998653   358899999999999999999998   889999999999999999999999999997654


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCcC
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ..........         ...++..|++||.+....++.++|||||||++|||++ |..||.........+.....   
T Consensus       147 ~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~---  214 (257)
T cd05116         147 ADENYYKAKT---------HGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESG---  214 (257)
T ss_pred             CCCCeeeecC---------CCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCC---
Confidence            3322111000         0112346788888877788999999999999999998 89898754433222222211   


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ..     +..+..++    ..+.+++.+||+.||++||++.+|.++|+..
T Consensus       215 ~~-----~~~~~~~~----~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         215 ER-----MECPQRCP----PEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             CC-----CCCCCCCC----HHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            00     11112233    3488999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=4.1e-37  Score=328.28  Aligned_cols=243  Identities=20%  Similarity=0.253  Sum_probs=190.8

Q ss_pred             ccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          446 SFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      +.||+|+||.||+++ ..+|+.||+|.++...   ......+..|+++++.++||||+++++++...        ...++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~--------~~~~l   72 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTH--------DRLCF   72 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcC--------CEEEE
Confidence            368999999999998 4578999999997432   23445678899999999999999999988763        47999


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      ||||+++|+|..++..   ...+++..+..++.|++.||+|||+.  .+|+||||||+|||++.++.+||+|||+++...
T Consensus        73 v~E~~~~~~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~  147 (325)
T cd05594          73 VMEYANGGELFFHLSR---ERVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI  147 (325)
T ss_pred             EEeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCeecC
Confidence            9999999999988865   34589999999999999999999963  589999999999999999999999999986432


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCC
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG  681 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~  681 (747)
                      .....            .....++..|+|||.+....++.++|||||||++|||+||+.||...............    
T Consensus       148 ~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~----  211 (325)
T cd05594         148 KDGAT------------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME----  211 (325)
T ss_pred             CCCcc------------cccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcC----
Confidence            11110            01124567889999998888999999999999999999999998755443322221111    


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHH
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWN  726 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  726 (747)
                           ...++...+    ..+.+++.+||+.||++|+     ++.++++.
T Consensus       212 -----~~~~p~~~~----~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         212 -----EIRFPRTLS----PEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             -----CCCCCCCCC----HHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence                 011112223    3478899999999999996     89999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=6.9e-37  Score=333.12  Aligned_cols=259  Identities=20%  Similarity=0.280  Sum_probs=196.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~  510 (747)
                      .++|.+.+.||+|+||.||+|++.      .++.||||+++... ....+.+.+|+++|.++. |||||+++|+|...  
T Consensus        36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~--  113 (401)
T cd05107          36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKG--  113 (401)
T ss_pred             HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC--
Confidence            346778899999999999999853      34689999997542 233457889999999997 99999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCC---------------------------------------------------
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENC---------------------------------------------------  539 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------------------------------------------------  539 (747)
                            ...++||||+++|+|.++++...                                                   
T Consensus       114 ------~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (401)
T cd05107         114 ------GPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESA  187 (401)
T ss_pred             ------CCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCcccc
Confidence                  36899999999999999886431                                                   


Q ss_pred             --------------------------------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          540 --------------------------------------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       540 --------------------------------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                                                                  ....++|.....++.|++.||+|||+   .+|+|||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrd  264 (401)
T cd05107         188 DYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLAS---KNCVHRD  264 (401)
T ss_pred             CccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcCccc
Confidence                                                        11247888899999999999999998   8899999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      |||+|||++.++.+||+|||+++............    .      ..++..|++||.+....++.++|||||||++|||
T Consensus       265 lkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~----~------~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~  334 (401)
T cd05107         265 LAARNVLICEGKLVKICDFGLARDIMRDSNYISKG----S------TFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEI  334 (401)
T ss_pred             CCcceEEEeCCCEEEEEecCcceecccccccccCC----C------cCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHH
Confidence            99999999999999999999997643221110000    0      1123457888888888889999999999999999


Q ss_pred             hh-CCCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          656 LV-GPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       656 lt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ++ |..|+...... ..........        .+..    +......+.+++.+||+.+|.+||++.||++.|+.+
T Consensus       335 l~~g~~P~~~~~~~~~~~~~~~~~~--------~~~~----p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         335 FTLGGTPYPELPMNEQFYNAIKRGY--------RMAK----PAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             HHcCCCCCCCCCchHHHHHHHHcCC--------CCCC----CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            98 78887643221 1111111110        0111    112234589999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.2e-36  Score=317.66  Aligned_cols=262  Identities=19%  Similarity=0.279  Sum_probs=203.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCC-----CcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLEN-----GTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~-----g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      .++|++.+.||+|+||.||+|....     +..||+|++... .....+.+.+|+.++++++||||+++++++...    
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~----   80 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIED----   80 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC----
Confidence            4678888999999999999998654     688999988743 234456788999999999999999999998763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCC-----CCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPE-----NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~-----~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                         ....++++||+++|+|.+++......     ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++
T Consensus        81 ---~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~i~H~di~p~nil~~~~~  154 (280)
T cd05043          81 ---GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHK---RGVIHKDIAARNCVIDEEL  154 (280)
T ss_pred             ---CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCHhhEEEcCCC
Confidence               23679999999999999998653221     468999999999999999999998   7899999999999999999


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCCh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGE  666 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~  666 (747)
                      .+||+|||+++.+..........          ...+...|++||.+....++.++|||||||++||+++ |+.|+....
T Consensus       155 ~~kl~d~g~~~~~~~~~~~~~~~----------~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  224 (280)
T cd05043         155 QVKITDNALSRDLFPMDYHCLGD----------NENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID  224 (280)
T ss_pred             cEEECCCCCcccccCCceEEeCC----------CCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC
Confidence            99999999997654322111000          0112345788888888889999999999999999999 999987654


Q ss_pred             hhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ...+........        .......++    ..+.+++.+||..||++|||+.|+++.|+.+..
T Consensus       225 ~~~~~~~~~~~~--------~~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         225 PFEMAAYLKDGY--------RLAQPINCP----DELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             HHHHHHHHHcCC--------CCCCCCcCC----HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            333222211110        001111223    348899999999999999999999999987754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.9e-36  Score=311.95  Aligned_cols=249  Identities=20%  Similarity=0.302  Sum_probs=190.8

Q ss_pred             cccCCCCeeEEEEEeC---CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEE
Q 044236          447 FMGEGSRGKLYKGRLE---NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      .||+|+||.||+|++.   .+..||||.+.... ....+.+.+|+.++++++||||++++++|..         ...++|
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~---------~~~~lv   72 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA---------EALMLV   72 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC---------CCeEEE
Confidence            3899999999999753   35679999987543 3334678999999999999999999998753         257999


Q ss_pred             EeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccc
Q 044236          523 YEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE  602 (747)
Q Consensus       523 ~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  602 (747)
                      |||+++|+|.+++...  ...+++..++.++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++....
T Consensus        73 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~  147 (257)
T cd05115          73 MEMASGGPLNKFLSGK--KDEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGA  147 (257)
T ss_pred             EEeCCCCCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHh---cCeeecccchheEEEcCCCcEEeccCCccccccC
Confidence            9999999999998753  3468999999999999999999999   7899999999999999999999999999975433


Q ss_pred             cchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCcCC
Q 044236          603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQDG  681 (747)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~  681 (747)
                      ..........         ...+..|++||.+....++.++|||||||++||+++ |..|+................   
T Consensus       148 ~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~---  215 (257)
T cd05115         148 DDSYYKARSA---------GKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGK---  215 (257)
T ss_pred             CccceeccCC---------CCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCC---
Confidence            2221110000         011235778888877888999999999999999996 898987544322222211111   


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      .     +.    ++......+.+++.+||..+|++||++.+|.+.|+..
T Consensus       216 ~-----~~----~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         216 R-----LD----CPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             C-----CC----CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            0     11    1122234488999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.5e-36  Score=313.46  Aligned_cols=252  Identities=22%  Similarity=0.360  Sum_probs=197.2

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||.||+|..+++..||+|.+..... ..+.+.+|+.++++++|+||+++++++..         ...
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~---------~~~   75 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSE---------EPI   75 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECC---------CCc
Confidence            56888899999999999999988888899999875332 34678999999999999999999998743         247


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++++|.++++... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~Nili~~~~~~~l~dfg~~~~  151 (260)
T cd05070          76 YIVTEYMSKGSLLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLARL  151 (260)
T ss_pred             EEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEEeCCceEEeCCceeeee
Confidence            89999999999999987532 3458999999999999999999999   7899999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhh-HHHHHhcc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFL-LNEMASFG  677 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~-~~~~~~~~  677 (747)
                      ...........           ..+...|++||......++.++|||||||++|||++ |..|+....... ...+.. .
T Consensus       152 ~~~~~~~~~~~-----------~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~-~  219 (260)
T cd05070         152 IEDNEYTARQG-----------AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVER-G  219 (260)
T ss_pred             ccCcccccccC-----------CCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-C
Confidence            54322111000           011235788888877889999999999999999999 788886543222 222211 0


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                        .      .+    ..+......+.+++.+||..+|++|||+.++...|++
T Consensus       220 --~------~~----~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         220 --Y------RM----PCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             --C------CC----CCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence              0      01    1112233458899999999999999999999988864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.1e-37  Score=332.51  Aligned_cols=262  Identities=19%  Similarity=0.270  Sum_probs=197.1

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||+++...   ......+.+|+++++.++||||+++++++...       
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~-------   73 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDE-------   73 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcC-------
Confidence            4788999999999999999995 568999999997432   23345678899999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~E~~~~g~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg  146 (364)
T cd05599          74 -NYLYLIMEYLPGGDMMTLLMKK---DTFTEEETRFYIAETILAIDSIHK---LGYIHRDIKPDNLLLDAKGHIKLSDFG  146 (364)
T ss_pred             -CeEEEEECCCCCcHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEeecc
Confidence             4899999999999999998753   358999999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccC---C---C--------------CC------cccccceeeecCCcceeeeeeccCCCcCCceeehh
Q 044236          596 ISIIMEEHEKLEAKG---E---G--------------PK------ARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFG  649 (747)
Q Consensus       596 la~~~~~~~~~~~~~---~---~--------------~~------~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfG  649 (747)
                      +++.+..........   .   .              ..      ........+++..|+|||++....++.++||||||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  226 (364)
T cd05599         147 LCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLG  226 (364)
T ss_pred             cceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecch
Confidence            987543221100000   0   0              00      00000123578889999999888999999999999


Q ss_pred             HHHHHHhhCCCCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC---HHHHHH
Q 044236          650 FILLESLVGPIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS---FEDVLW  725 (747)
Q Consensus       650 vvl~Elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~evl~  725 (747)
                      |++|||++|..||....... ...+....   .  ....+. ...+    ...+.+++.+|+. +|.+|++   +.|++.
T Consensus       227 ~il~el~~G~~Pf~~~~~~~~~~~i~~~~---~--~~~~~~-~~~~----s~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         227 VIMYEMLVGYPPFCSDNPQETYRKIINWK---E--TLQFPD-EVPL----SPEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             hHHHHhhcCCCCCCCCCHHHHHHHHHcCC---C--ccCCCC-CCCC----CHHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            99999999999997554322 22221111   0  000010 0112    2347788888886 9999998   888876


Q ss_pred             H
Q 044236          726 N  726 (747)
Q Consensus       726 ~  726 (747)
                      +
T Consensus       296 h  296 (364)
T cd05599         296 H  296 (364)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.8e-37  Score=329.55  Aligned_cols=262  Identities=21%  Similarity=0.304  Sum_probs=200.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|.+.+.||+|+||.||+|+. .+|+.||||+++...   ......+.+|++++..++||||+++++++.+.       
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-------   73 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDE-------   73 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecC-------
Confidence            4688899999999999999995 479999999997432   23456788999999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~giiH~Dlkp~NIll~~~~~~kL~Dfg  146 (350)
T cd05573          74 -EHLYLVMEYMPGGDLMNLLIRK---DVFPEETARFYIAELVLALDSVHK---LGFIHRDIKPDNILIDADGHIKLADFG  146 (350)
T ss_pred             -CeEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEeecCC
Confidence             4799999999999999998763   468999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhccc-----------------CCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC
Q 044236          596 ISIIMEEHEKLEAK-----------------GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG  658 (747)
Q Consensus       596 la~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg  658 (747)
                      +++...........                 ..............++..|+|||.+....++.++|||||||++|||++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g  226 (350)
T cd05573         147 LCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYG  226 (350)
T ss_pred             CCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccC
Confidence            99765433200000                 0000000111223567789999999888999999999999999999999


Q ss_pred             CCCCCCChhhhH-HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-HHHHHHH
Q 044236          659 PIVTGKGEAFLL-NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-FEDVLWN  726 (747)
Q Consensus       659 ~~p~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~evl~~  726 (747)
                      +.||........ ..+......     ...|. ...    ....+.+++.+|+. ||.+||+ +.|+++.
T Consensus       227 ~~Pf~~~~~~~~~~~i~~~~~~-----~~~p~-~~~----~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         227 FPPFYSDTLQETYNKIINWKES-----LRFPP-DPP----VSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             CCCCCCCCHHHHHHHHhccCCc-----ccCCC-CCC----CCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            999875543221 112111000     00011 011    23347889999997 9999999 9999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.2e-37  Score=319.72  Aligned_cols=251  Identities=18%  Similarity=0.213  Sum_probs=195.0

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      +|+..+.||+|+||+||++.. .+++.||||++....   ......+.+|+.++++++||||+++++++...        
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------   72 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETK--------   72 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCC--------
Confidence            477889999999999999984 568999999987432   22234577899999999999999999988763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      +..++||||+++|+|.+++... ....+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||+
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l~Dfg~  148 (285)
T cd05605          73 DALCLVLTLMNGGDLKFHIYNM-GNPGFDEERAVFYAAEITCGLEDLHR---ERIVYRDLKPENILLDDYGHIRISDLGL  148 (285)
T ss_pred             CeEEEEEeccCCCcHHHHHHhc-CcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHEEECCCCCEEEeeCCC
Confidence            4789999999999999887643 13458999999999999999999999   7899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHHh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMAS  675 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~~  675 (747)
                      ++.........             ...++..|++||.+....++.++|||||||++|||++|..||........ ..+..
T Consensus       149 ~~~~~~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~  215 (285)
T cd05605         149 AVEIPEGETIR-------------GRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVER  215 (285)
T ss_pred             ceecCCCCccc-------------cccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHH
Confidence            87643221110             12345678899998888899999999999999999999999875433211 11111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWN  726 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  726 (747)
                      .....      .    ..++......+.+++.+||+.||++||     ++.++++.
T Consensus       216 ~~~~~------~----~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         216 RVKED------Q----EEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             Hhhhc------c----cccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence            11000      0    111223344588999999999999999     88888754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=7.1e-37  Score=323.26  Aligned_cols=261  Identities=18%  Similarity=0.199  Sum_probs=191.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||+++.... .....+.+|+.++++++||||+++++++...        
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--------   75 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTK--------   75 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecC--------
Confidence            36799999999999999999995 4689999999875432 2234677899999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||++ ++|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        76 ~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~  149 (303)
T cd07869          76 ETLTLVFEYVH-TDLCQYMDKH--PGGLHPENVKLFLFQLLRGLSYIHQ---RYILHRDLKPQNLLISDTGELKLADFGL  149 (303)
T ss_pred             CeEEEEEECCC-cCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECCCCc
Confidence            47899999996 5888777653  3458889999999999999999999   8899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh--hhHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA--FLLNEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~--~~~~~~  673 (747)
                      ++.........            ....++..|+|||++.. ..++.++|||||||++|||++|+.||.....  ..+..+
T Consensus       150 ~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~  217 (303)
T cd07869         150 ARAKSVPSHTY------------SNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERI  217 (303)
T ss_pred             ceeccCCCccC------------CCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHH
Confidence            86432211100            01234567889998754 4578899999999999999999999875321  122222


Q ss_pred             HhccCcCC---cc-----ccccccccCC-CCH---------HHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDG---RR-----RIVDPVVLTT-CSQ---------ESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~---~~-----~~~d~~~~~~-~~~---------~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ........   ..     ...++..... .+.         .....+.+++.+|++.||++|||+.|++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         218 FLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             HHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence            11110000   00     0000000000 000         11235789999999999999999999985

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1e-36  Score=323.56  Aligned_cols=240  Identities=21%  Similarity=0.271  Sum_probs=185.4

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhc-CCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSK-LQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~-l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|+. .+++.||||+++...   ....+.+..|..++.. .+||||+++++++...        ...+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~--------~~~~   72 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTK--------EHLF   72 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcC--------CEEE
Confidence            3689999999999995 568899999997432   2334455667777765 4899999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~gg~L~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~  146 (316)
T cd05592          73 FVMEYLNGGDLMFHIQSS---GRFDEARARFYAAEIICGLQFLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKEN  146 (316)
T ss_pred             EEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHeEECCCCCEEEccCcCCeEC
Confidence            999999999999988753   358889999999999999999999   89999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ......            ....+++..|++||.+....++.++|||||||++|||++|+.||.......+.......   
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~---  211 (316)
T cd05592         147 MNGEGK------------ASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILND---  211 (316)
T ss_pred             CCCCCc------------cccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcC---
Confidence            221110            11134677899999998888999999999999999999999998755433222211100   


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH-HHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE-DVL  724 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~-evl  724 (747)
                            .+.+...+    ...+.+++.+||+.||.+||++. ++.
T Consensus       212 ------~~~~~~~~----~~~~~~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         212 ------RPHFPRWI----SKEAKDCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             ------CCCCCCCC----CHHHHHHHHHHccCCHHHcCCChHHHH
Confidence                  11111222    23478899999999999999976 443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1.5e-36  Score=326.33  Aligned_cols=262  Identities=22%  Similarity=0.292  Sum_probs=196.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||.||+|+.      .+++.||||+++... ......+.+|+.++.++ +|||||+++++|...+ 
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~-   84 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG-   84 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC-
Confidence            35788999999999999999973      347899999997532 23346788999999999 6899999999886532 


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCC--------------------------------------------------
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------------------------------------------------  540 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~--------------------------------------------------  540 (747)
                            ...++||||+++|+|.++++....                                                  
T Consensus        85 ------~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (343)
T cd05103          85 ------GPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSL  158 (343)
T ss_pred             ------CceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCcc
Confidence                  367899999999999988864210                                                  


Q ss_pred             --------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchh
Q 044236          541 --------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKL  606 (747)
Q Consensus       541 --------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~  606 (747)
                                    ...++|..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+++........
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~  235 (343)
T cd05103         159 SDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY  235 (343)
T ss_pred             ccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCccCeEEEcCCCcEEEEecccccccccCcch
Confidence                          1247888899999999999999999   89999999999999999999999999998764322111


Q ss_pred             cccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh-hHHHHHhccCcCCccc
Q 044236          607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF-LLNEMASFGSQDGRRR  684 (747)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~  684 (747)
                      ...+.          ...+..|++||.+....++.++|||||||++|||++ |..|+...... .........   ..  
T Consensus       236 ~~~~~----------~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~---~~--  300 (343)
T cd05103         236 VRKGD----------ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEG---TR--  300 (343)
T ss_pred             hhcCC----------CCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhcc---CC--
Confidence            11000          011235778888878889999999999999999997 88887643221 111111110   00  


Q ss_pred             cccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       685 ~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                         +......    ...+.+++.+||+.+|++|||+.||+++|+.+.+
T Consensus       301 ---~~~~~~~----~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         301 ---MRAPDYT----TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             ---CCCCCCC----CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence               0001111    2347899999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=2.6e-37  Score=341.84  Aligned_cols=267  Identities=15%  Similarity=0.150  Sum_probs=191.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ..+|++.+.||+|+||.||+|+. .+++.||||++....    ....+|+.+|++++|||||++++++............
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            45799999999999999999985 568999999886322    2345799999999999999999987543211112233


Q ss_pred             eEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-cEEEeccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYG  595 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFG  595 (747)
                      .+++||||+++ ++.+++... .....+++..+..++.|+++||+|||+   .+|+||||||+|||++.++ .+||+|||
T Consensus       141 ~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~---~~IiHrDLKp~NILl~~~~~~vkL~DFG  216 (440)
T PTZ00036        141 FLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS---KFICHRDLKPQNLLIDPNTHTLKLCDFG  216 (440)
T ss_pred             EEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCcCHHHEEEcCCCCceeeeccc
Confidence            57799999985 676666431 124568999999999999999999999   8899999999999999664 79999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~  673 (747)
                      +|+.........             ...++..|+|||++.+ ..++.++|||||||++|||++|.+||.... .+.+..+
T Consensus       217 la~~~~~~~~~~-------------~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i  283 (440)
T PTZ00036        217 SAKNLLAGQRSV-------------SYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRI  283 (440)
T ss_pred             cchhccCCCCcc-------------cCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence            997553221110             1234567899998754 468999999999999999999998886432 2333332


Q ss_pred             HhccCcCCc---------------cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGR---------------RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~---------------~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........               ..+....+...++...+.++.+++.+||+.||.+|||+.|++++
T Consensus       284 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        284 IQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             HHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence            221111000               00000001111222234568899999999999999999999865

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=1.3e-36  Score=323.81  Aligned_cols=242  Identities=21%  Similarity=0.229  Sum_probs=188.7

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|+. .+++.||||+++..   .....+.+..|.+++..+ +||||+++++++...        ...+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~--------~~~~   72 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTK--------DRLF   72 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcC--------CeEE
Confidence            3689999999999985 45889999999743   223445677888988866 799999999998763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~E~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~  146 (321)
T cd05591          73 FVMEYVNGGDLMFQIQRS---RKFDEPRSRFYAAEVTLALMFLHR---HGVIYRDLKLDNILLDAEGHCKLADFGMCKEG  146 (321)
T ss_pred             EEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeecccceec
Confidence            999999999999888653   458899999999999999999999   78999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ......            .....++..|+|||.+....++.++|||||||++|||++|+.||..............  ..
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~--~~  212 (321)
T cd05591         147 ILNGVT------------TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILH--DD  212 (321)
T ss_pred             ccCCcc------------ccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHc--CC
Confidence            211110            0113456788999999888899999999999999999999999975543322221111  00


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-------CHHHHHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-------SFEDVLWN  726 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-------s~~evl~~  726 (747)
                             ...+..++    ..+.+++.+|++.||++||       ++.++++.
T Consensus       213 -------~~~p~~~~----~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         213 -------VLYPVWLS----KEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             -------CCCCCCCC----HHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence                   00111122    3478899999999999999       78888754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-37  Score=323.14  Aligned_cols=243  Identities=27%  Similarity=0.395  Sum_probs=197.1

Q ss_pred             CCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhc---HHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~---~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      |..++.||.|+||.||.|+ ..+.+.||||++....++.   -+++..|+.+|++++|||+|.+.|+|...        .
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre--------~   99 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLRE--------H   99 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeecc--------c
Confidence            5567789999999999999 6788999999998765443   46788999999999999999999998863        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..|||||||- |+-.+++.-+  ..++..-++..|+.+.+.||+|||+   .+.||||||+.|||+.+.|.+|++|||.|
T Consensus       100 TaWLVMEYCl-GSAsDlleVh--kKplqEvEIAAi~~gaL~gLaYLHS---~~~IHRDiKAGNILLse~g~VKLaDFGSA  173 (948)
T KOG0577|consen  100 TAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAITHGALQGLAYLHS---HNRIHRDIKAGNILLSEPGLVKLADFGSA  173 (948)
T ss_pred             hHHHHHHHHh-ccHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHH---hhHHhhhccccceEecCCCeeeeccccch
Confidence            7899999995 4777777644  4578899999999999999999999   67799999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeee---eccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVV---DIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEM  673 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~  673 (747)
                      ..+.+..+                +.|+++|||||++   +.+.|+-|+||||+||+..||+-+++|.-..... .+..+
T Consensus       174 si~~PAns----------------FvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHI  237 (948)
T KOG0577|consen  174 SIMAPANS----------------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI  237 (948)
T ss_pred             hhcCchhc----------------ccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHH
Confidence            76554332                4678889999876   4678999999999999999999998886433221 11122


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..   .+      .|.+.   ..+++..+..++..|++.-|.+|||..++++.
T Consensus       238 AQ---Ne------sPtLq---s~eWS~~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  238 AQ---NE------SPTLQ---SNEWSDYFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             Hh---cC------CCCCC---CchhHHHHHHHHHHHHhhCcccCCcHHHHhhc
Confidence            11   11      12221   45677779999999999999999999998763

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=2e-36  Score=316.05  Aligned_cols=255  Identities=23%  Similarity=0.341  Sum_probs=197.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|...++||+|+||.||++..      .++..+|+|.++.........+.+|++++++++|+||+++++++...     
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   79 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEG-----   79 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecC-----
Confidence            4577788999999999999963      23668999998866666667899999999999999999999988763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCP------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                         ...++||||+++|+|.++++...+            ...+++..++.++.|++.|++|||+   .+|+||||||+||
T Consensus        80 ---~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~ni  153 (280)
T cd05092          80 ---RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS---LHFVHRDLATRNC  153 (280)
T ss_pred             ---CceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH---CCeecccccHhhE
Confidence               368999999999999999875321            1358899999999999999999998   8899999999999


Q ss_pred             eecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCC
Q 044236          582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPI  660 (747)
Q Consensus       582 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~  660 (747)
                      ++++++.+||+|||+++.+..........          ....+..|.+||......++.++|||||||++|||++ |..
T Consensus       154 l~~~~~~~kL~dfg~~~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~  223 (280)
T cd05092         154 LVGQGLVVKIGDFGMSRDIYSTDYYRVGG----------RTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQ  223 (280)
T ss_pred             EEcCCCCEEECCCCceeEcCCCceeecCC----------CccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCC
Confidence            99999999999999987553221111000          0112245788898888889999999999999999999 888


Q ss_pred             CCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          661 VTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       661 p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      |+...... ....... ...        +.....++.    .+.+++.+||+.||.+||++.||.+.|+
T Consensus       224 p~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~----~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         224 PWYQLSNTEAIECITQ-GRE--------LERPRTCPP----EVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             CCccCCHHHHHHHHHc-Ccc--------CCCCCCCCH----HHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence            87543322 2211111 100        011122333    4789999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=2.9e-36  Score=310.29  Aligned_cols=250  Identities=18%  Similarity=0.249  Sum_probs=198.1

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|...+.||+|+||.||+|+. .+++.||+|.+...  .......+.+|++++++++||||+++++++...        .
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~   72 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDK--------G   72 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccC--------C
Confidence            477788999999999999985 56899999998743  344567888999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.++++.. ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~~l~~al~~lH~---~~i~h~dl~~~nili~~~~~~~l~df~~~  148 (256)
T cd08529          73 KLNIVMEYAENGDLHKLLKMQ-RGRPLPEDQVWRFFIQILLGLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVA  148 (256)
T ss_pred             EEEEEEEeCCCCcHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEeCCCCEEEcccccc
Confidence            789999999999999998764 23468999999999999999999998   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      +..........            ...+...|.+||......++.++|||||||++|||++|+.|+.............. 
T Consensus       149 ~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~-  215 (256)
T cd08529         149 KLLSDNTNFAN------------TIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIR-  215 (256)
T ss_pred             eeccCccchhh------------ccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHc-
Confidence            76543221110            12344567889988888899999999999999999999999875543221111110 


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                        ...     +.    .+......+.+++.+||+.+|++||++.++++.
T Consensus       216 --~~~-----~~----~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         216 --GVF-----PP----VSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             --CCC-----CC----CccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence              000     11    111233458999999999999999999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-36  Score=331.81  Aligned_cols=262  Identities=18%  Similarity=0.236  Sum_probs=194.6

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|.+.+.||+|+||.||+++ ..+++.||||++....   ....+.+.+|++++++++|||||++++++.+.       
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~-------   73 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDA-------   73 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcC-------
Confidence            468889999999999999998 4578999999986432   23446788899999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~ql~~aL~~LH~---~givHrDlkp~NIll~~~~~~kl~DfG  146 (377)
T cd05629          74 -QYLYLIMEFLPGGDLMTMLIKY---DTFSEDVTRFYMAECVLAIEAVHK---LGFIHRDIKPDNILIDRGGHIKLSDFG  146 (377)
T ss_pred             -CeeEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEEeecc
Confidence             4799999999999999998753   458888899999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhc---c---cCCCCC-----------------------------cccccceeeecCCcceeeeeeccCCC
Q 044236          596 ISIIMEEHEKLE---A---KGEGPK-----------------------------ARYGFLFICRTSAENVVIVVDIQRTK  640 (747)
Q Consensus       596 la~~~~~~~~~~---~---~~~~~~-----------------------------~~~~~~~~~~~~~~~~~e~~~~~~~s  640 (747)
                      +++.........   .   ......                             ........+++..|++||++....++
T Consensus       147 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  226 (377)
T cd05629         147 LSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYG  226 (377)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCC
Confidence            996432110000   0   000000                             00000113577889999999888899


Q ss_pred             cCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCC--
Q 044236          641 LEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR--  717 (747)
Q Consensus       641 ~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R--  717 (747)
                      .++|||||||++|||+||..||....... ...+.....   .....+.   .    .....+.+++.+|+. +|.+|  
T Consensus       227 ~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~---~~~~p~~---~----~~s~~~~dli~~lL~-~~~~r~~  295 (377)
T cd05629         227 QECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRE---TLYFPDD---I----HLSVEAEDLIRRLIT-NAENRLG  295 (377)
T ss_pred             CceeeEecchhhhhhhcCCCCCCCCCHHHHHHHHHccCC---ccCCCCC---C----CCCHHHHHHHHHHhc-CHhhcCC
Confidence            99999999999999999999987544322 222221110   0011110   0    122347888899997 66665  


Q ss_pred             -CCHHHHHHH
Q 044236          718 -PSFEDVLWN  726 (747)
Q Consensus       718 -Ps~~evl~~  726 (747)
                       +++.|++.+
T Consensus       296 r~~~~~~l~h  305 (377)
T cd05629         296 RGGAHEIKSH  305 (377)
T ss_pred             CCCHHHHhcC
Confidence             699998875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.2e-36  Score=318.31  Aligned_cols=255  Identities=22%  Similarity=0.292  Sum_probs=194.2

Q ss_pred             CCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      +|.+.+.||+|+||.||+|+..      .++.||||+++.... ...+.+.+|+.++++++|||||++++++...     
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~-----   80 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKE-----   80 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC-----
Confidence            4666788999999999999852      257899999975432 2346688999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCc
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNN  580 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~N  580 (747)
                         ...++++||+++++|.+++....             ....+++..+..++.|++.||+|||+   .+|+||||||+|
T Consensus        81 ---~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~---~gi~H~dlkp~N  154 (283)
T cd05091          81 ---QPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS---HHVVHKDLATRN  154 (283)
T ss_pred             ---CceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---cCccccccchhh
Confidence               36899999999999998875221             12358899999999999999999998   889999999999


Q ss_pred             eeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CC
Q 044236          581 ILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GP  659 (747)
Q Consensus       581 ILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~  659 (747)
                      |++++++.+||+|||+++...........+          ....+..|++||......++.++|||||||++|||++ |.
T Consensus       155 il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~  224 (283)
T cd05091         155 VLVFDKLNVKISDLGLFREVYAADYYKLMG----------NSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGL  224 (283)
T ss_pred             eEecCCCceEecccccccccccchheeecc----------CccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCC
Confidence            999999999999999987654322111100          0112346888998878889999999999999999998 77


Q ss_pred             CCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       660 ~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      .|+.............   ....     ......++    ..+.+++.+||+.+|++||++.+|+..|+
T Consensus       225 ~p~~~~~~~~~~~~i~---~~~~-----~~~~~~~~----~~~~~li~~cl~~~p~~RP~~~~i~~~l~  281 (283)
T cd05091         225 QPYCGYSNQDVIEMIR---NRQV-----LPCPDDCP----AWVYTLMLECWNEFPSRRPRFKDIHSRLR  281 (283)
T ss_pred             CCCCCCCHHHHHHHHH---cCCc-----CCCCCCCC----HHHHHHHHHHhCCCcccCCCHHHHHHHhh
Confidence            7876543322221111   1110     01112333    34889999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.1e-36  Score=324.70  Aligned_cols=241  Identities=21%  Similarity=0.245  Sum_probs=188.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCC-CcceeeeeeeccCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHP-HLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~-nIv~l~g~~~~~~~~~~~~  515 (747)
                      +|++.+.||+|+||.||+|+. .+++.||||+++..   .....+.+..|.+++..++|+ +|+++++++...       
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-------   73 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM-------   73 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcC-------
Confidence            578889999999999999985 45789999999743   233456778899999999765 578888877653       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~E~~~~g~L~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg  146 (324)
T cd05587          74 -DRLYFVMEYVNGGDLMYHIQQV---GKFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDAEGHIKIADFG  146 (324)
T ss_pred             -CEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEEcCCCCEEEeecC
Confidence             4789999999999999988653   358899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++.......            .....+++..|++||++....++.++|||||||++|||+||+.||.............
T Consensus       147 ~~~~~~~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~  214 (324)
T cd05587         147 MCKENIFGGK------------TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIM  214 (324)
T ss_pred             cceecCCCCC------------ceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            9864211110            0112356778999999988889999999999999999999999997554332222111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF  720 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  720 (747)
                      ..         .+.++..    ....+.+++.+||+.||.+||+.
T Consensus       215 ~~---------~~~~~~~----~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         215 EH---------NVSYPKS----LSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             cC---------CCCCCCC----CCHHHHHHHHHHhhcCHHHcCCC
Confidence            10         0111112    23347899999999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-36  Score=306.39  Aligned_cols=270  Identities=17%  Similarity=0.239  Sum_probs=200.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhc--CCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK--LQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~--l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .......+.||+|.||+||+|+|+ |+.||||++...   +.+.+.+|.++.+.  |||+||+.|++.-..    +...-
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~sr---dE~SWfrEtEIYqTvmLRHENILgFIaaD~~----~~gs~  281 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSR---DERSWFRETEIYQTVMLRHENILGFIAADNK----DNGSW  281 (513)
T ss_pred             hheeEEEEEecCccccceeecccc-CCceEEEEeccc---chhhhhhHHHHHHHHHhccchhhhhhhcccc----CCCce
Confidence            345677899999999999999996 789999999743   34677889888875  599999999986433    22345


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhc-----CCCCCcccCCCCCCceeecCCCcEEE
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS-----SVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-----~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                      .+++||.||-+.|||++||..    ..++-...++++.-+|.||+|||-     ...|.|.|||||+.|||+..++.+-|
T Consensus       282 TQLwLvTdYHe~GSL~DyL~r----~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~I  357 (513)
T KOG2052|consen  282 TQLWLVTDYHEHGSLYDYLNR----NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  357 (513)
T ss_pred             EEEEEeeecccCCcHHHHHhh----ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEE
Confidence            689999999999999999974    468999999999999999999995     34478999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC----CC--cCCceeehhHHHHHHhhC-------
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR----TK--LEDDVYNFGFILLESLVG-------  658 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----~s--~k~DVwSfGvvl~Elltg-------  658 (747)
                      +|+|||-...+.......        +.-.-+|+..|||||+++..-    +.  ..+||||||.|+||++.+       
T Consensus       358 ADLGLAv~h~~~t~~idi--------~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~  429 (513)
T KOG2052|consen  358 ADLGLAVRHDSDTDTIDI--------PPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIV  429 (513)
T ss_pred             eeceeeEEecccCCcccC--------CCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEe
Confidence            999999543322111111        111236788899999987542    21  357999999999999853       


Q ss_pred             ---CCCCCCCh--hhhHHHHHhccCcCCccccccccccCC-CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          659 ---PIVTGKGE--AFLLNEMASFGSQDGRRRIVDPVVLTT-CSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       659 ---~~p~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                         +.||.+-.  .....+|....-.++.    .|.++.. .+.+++..+.++|+.||..+|..|-|+--|-+.|.++.+
T Consensus       430 eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~----RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  430 EEYQLPYYDVVPSDPSFEEMRKVVCVQKL----RPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             hhhcCCcccCCCCCCCHHHHhcceeeccc----CCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhc
Confidence               34543211  1112233322222222    2222222 234677789999999999999999999999999987765

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=1.7e-36  Score=314.17  Aligned_cols=254  Identities=17%  Similarity=0.233  Sum_probs=194.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ++|++.+.||+|+||.||+|+. .+++.||+|++..........+.+|+.++++++||||+++++++...        ..
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~--------~~   80 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSR--------EK   80 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeC--------CE
Confidence            5788999999999999999994 67899999999755444556788999999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.++++..   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        81 ~~iv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~  154 (267)
T cd06646          81 LWICMEYCGGGSLQDIYHVT---GPLSELQIAYVCRETLQGLAYLHS---KGKMHRDIKGANILLTDNGDVKLADFGVAA  154 (267)
T ss_pred             EEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEECcCccce
Confidence            89999999999999988653   458899999999999999999999   899999999999999999999999999987


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      .........            ....++..|++||.+.   ...++.++|||||||++|||++|+.|+.......  ....
T Consensus       155 ~~~~~~~~~------------~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~--~~~~  220 (267)
T cd06646         155 KITATIAKR------------KSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMR--ALFL  220 (267)
T ss_pred             eeccccccc------------CccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhh--hhee
Confidence            553211100            0122345677888763   3457889999999999999999988875332111  0000


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ....    ....+....  ....+..+.+++.+||+.+|++|||+++|++.|
T Consensus       221 ~~~~----~~~~~~~~~--~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         221 MSKS----NFQPPKLKD--KTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             eecC----CCCCCCCcc--ccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            0000    000111100  112234588999999999999999999998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=3e-36  Score=311.48  Aligned_cols=254  Identities=21%  Similarity=0.308  Sum_probs=197.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|.+.+.||+|+||.||+|+..+...||+|+++... ...+.+.+|++++++++||||+++++++..         ...
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~---------~~~   75 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE---------EPI   75 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-cCHHHHHHHHHHHHhCCCCCcceEEEEECC---------CCc
Confidence            5688899999999999999997666779999987432 234678999999999999999999987643         247


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++.... ...++|..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||.++.
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~  151 (262)
T cd05071          76 YIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARL  151 (262)
T ss_pred             EEEEEcCCCCcHHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcccEEEcCCCcEEeccCCceee
Confidence            89999999999999997532 3457899999999999999999999   8899999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ..........           ...+...|++||......++.++|||||||++|||+| |..|+................
T Consensus       152 ~~~~~~~~~~-----------~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~  220 (262)
T cd05071         152 IEDNEYTARQ-----------GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY  220 (262)
T ss_pred             cccccccccc-----------CCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCC
Confidence            5432211000           0112345788888878889999999999999999999 788886543322211111000


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                              ..    ..+.+.+..+.+++.+||+.+|++||++.++++.|+..
T Consensus       221 --------~~----~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         221 --------RM----PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             --------CC----CCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence                    00    11223344588999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=2.8e-36  Score=316.62  Aligned_cols=259  Identities=23%  Similarity=0.319  Sum_probs=197.2

Q ss_pred             CCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      +|++.+.||+|+||.||+|+..      ....+|+|.+.... ....+.+.+|+.++++++||||+++++.|...     
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----   75 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQD-----   75 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecC-----
Confidence            4778899999999999999742      23578899886432 33456788999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCC---------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENC---------------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSF  572 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~---------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  572 (747)
                         ...++||||+++|+|.+++....                     ....+++..++.++.|++.||+|||+   .+|+
T Consensus        76 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~iv  149 (290)
T cd05045          76 ---GPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE---MKLV  149 (290)
T ss_pred             ---CCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHH---CCee
Confidence               36799999999999999875321                     12358899999999999999999998   8899


Q ss_pred             cCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHH
Q 044236          573 SNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL  652 (747)
Q Consensus       573 HrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl  652 (747)
                      ||||||+||++++++.+||+|||+++............          .......|++||......++.++|||||||++
T Consensus       150 H~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~----------~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l  219 (290)
T cd05045         150 HRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRS----------KGRIPVKWMAIESLFDHIYTTQSDVWSFGVLL  219 (290)
T ss_pred             hhhhhhheEEEcCCCcEEeccccccccccCccchhccc----------CCCCCccccCHHHHccCCcchHhHHHHHHHHH
Confidence            99999999999999999999999987543222111000          01122357788877777889999999999999


Q ss_pred             HHHhh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          653 LESLV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       653 ~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      |||+| |+.|+.......+........        .......+    ...+.+++.+||+.+|++||++.|+++.|+.+.
T Consensus       220 ~el~t~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~----~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~  287 (290)
T cd05045         220 WEIVTLGGNPYPGIAPERLFNLLKTGY--------RMERPENC----SEEMYNLMLTCWKQEPDKRPTFADISKELEKMM  287 (290)
T ss_pred             HHHHhcCCCCCCCCCHHHHHHHHhCCC--------CCCCCCCC----CHHHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence            99999 888886544333222221110        01111222    334889999999999999999999999999875


Q ss_pred             H
Q 044236          732 Q  732 (747)
Q Consensus       732 ~  732 (747)
                      .
T Consensus       288 ~  288 (290)
T cd05045         288 V  288 (290)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.5e-36  Score=315.85  Aligned_cols=238  Identities=21%  Similarity=0.330  Sum_probs=181.1

Q ss_pred             cccCCCCeeEEEEEeCC-------------------------CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCccee
Q 044236          447 FMGEGSRGKLYKGRLEN-------------------------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL  501 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~~~-------------------------g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l  501 (747)
                      .||+|+||.||+|++..                         ...||+|.+..........+.+|+.++++++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            58999999999997421                         13588998875544445678889999999999999999


Q ss_pred             eeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       502 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                      +|+|...        ...++||||+++|+|..++...  ...+++..++.++.|+++||+|||+   .+|+||||||+||
T Consensus        82 ~~~~~~~--------~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~Ni  148 (274)
T cd05076          82 HGVCVRG--------SENIMVEEFVEHGPLDVCLRKE--KGRVPVAWKITVAQQLASALSYLED---KNLVHGNVCAKNI  148 (274)
T ss_pred             EEEEEeC--------CceEEEEecCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHc---CCccCCCCCcccE
Confidence            9999873        3689999999999999988653  3458899999999999999999998   8999999999999


Q ss_pred             eecCCC-------cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHH
Q 044236          582 LLDEHR-------IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILL  653 (747)
Q Consensus       582 Lld~~~-------~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~  653 (747)
                      |++..+       .+|++|||+++.......                ..++.+|++||.+.. ..++.++|||||||++|
T Consensus       149 ll~~~~~~~~~~~~~kl~d~g~~~~~~~~~~----------------~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~  212 (274)
T cd05076         149 LLARLGLAEGTSPFIKLSDPGVSFTALSREE----------------RVERIPWIAPECVPGGNSLSTAADKWSFGTTLL  212 (274)
T ss_pred             EEeccCcccCccceeeecCCccccccccccc----------------cccCCcccCchhhcCCCCCCcHHHHHHHHHHHH
Confidence            997643       479999998754321110                112345778887754 56889999999999999


Q ss_pred             HHh-hCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          654 ESL-VGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       654 Ell-tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      |++ +|+.|+...............     ..     .....    ...+.+++.+||+.+|++||||.+|++.|
T Consensus       213 el~~~g~~p~~~~~~~~~~~~~~~~-----~~-----~~~~~----~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         213 EICFDGEVPLKERTPSEKERFYEKK-----HR-----LPEPS----CKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             HHHhCCCCCccccChHHHHHHHHhc-----cC-----CCCCC----ChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            995 688888654332222221100     00     00111    22478999999999999999999999887

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1.4e-36  Score=347.93  Aligned_cols=280  Identities=17%  Similarity=0.209  Sum_probs=207.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||+++...   ....+.+.+|++++++++|||||++++++...       
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~-------   74 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDG-------   74 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeC-------
Confidence            5788999999999999999985 568999999987421   22346789999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCC--------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENC--------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~--------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                       +..++||||+++|+|.+++....        ....+++..++.++.||++||+|||+   .+|+||||||+|||++.++
T Consensus        75 -~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs---~GIIHRDLKPeNILLd~dg  150 (932)
T PRK13184         75 -DPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHS---KGVLHRDLKPDNILLGLFG  150 (932)
T ss_pred             -CEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHH---CCccccCCchheEEEcCCC
Confidence             47899999999999999886321        12346778889999999999999999   8999999999999999999


Q ss_pred             cEEEecccccccccccchhcc--cCC----CCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCC
Q 044236          588 IAKLSDYGISIIMEEHEKLEA--KGE----GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                      .+||+|||+++..........  ...    ............++..|+|||.+.+..++.++|||||||++|||+||+.|
T Consensus       151 ~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~P  230 (932)
T PRK13184        151 EVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFP  230 (932)
T ss_pred             CEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCC
Confidence            999999999976522111000  000    00000111124578899999999888999999999999999999999999


Q ss_pred             CCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-CHHHHHHHHHHHHHHhhhcccc
Q 044236          662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-SFEDVLWNLQYAAQVQATADAD  740 (747)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~evl~~L~~~~~~~~~~~~~  740 (747)
                      |.............         ..+|..... ..+.+..+.+++.+|++.||++|| +++++.+.|+...+..+.|...
T Consensus       231 F~~~~~~ki~~~~~---------i~~P~~~~p-~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~~p~w~~~  300 (932)
T PRK13184        231 YRRKKGRKISYRDV---------ILSPIEVAP-YREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQGSPEWTVK  300 (932)
T ss_pred             CCCcchhhhhhhhh---------ccChhhccc-cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcCcccccc
Confidence            86533221111000         011100000 012233478899999999999996 6788888898887766655443

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.2e-36  Score=323.67  Aligned_cols=236  Identities=23%  Similarity=0.259  Sum_probs=185.2

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|+. .+++.||||+++..   .....+.+..|..++..+ +||||+++++++...        +..+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~--------~~~~   72 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTP--------DRLF   72 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcC--------CEEE
Confidence            3689999999999995 56899999998743   223445677888888876 699999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 iv~Ey~~~g~L~~~i~~~---~~l~~~~~~~~~~ql~~~L~~lH~---~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~  146 (320)
T cd05590          73 FVMEFVNGGDLMFHIQKS---RRFDEARARFYAAEITSALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEG  146 (320)
T ss_pred             EEEcCCCCchHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeeCCCCeec
Confidence            999999999999988753   458899999999999999999999   89999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ......            .....++..|+|||.+....++.++|||||||++|||++|+.||.......+......   .
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~---~  211 (320)
T cd05590         147 IFNGKT------------TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILN---D  211 (320)
T ss_pred             CcCCCc------------ccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhc---C
Confidence            211110            0112456788999999888899999999999999999999999976544332221111   0


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF  720 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  720 (747)
                         .   ......    ....+.+++.+|++.||++||++
T Consensus       212 ---~---~~~~~~----~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         212 ---E---VVYPTW----LSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             ---C---CCCCCC----CCHHHHHHHHHHcccCHHHCCCC
Confidence               0   011111    23347899999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2.1e-36  Score=327.82  Aligned_cols=263  Identities=18%  Similarity=0.267  Sum_probs=193.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|+..+.||+|+||+||+|+. .+++.||||+++...   ......+.+|+.++.+++||||+++++++.+.       
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~-------   73 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDK-------   73 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecC-------
Confidence            4788999999999999999984 568999999997432   23345678899999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++|||||++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH~---~givHrDlKp~NILi~~~~~vkL~DFG  146 (363)
T cd05628          74 -LNLYLIMEFLPGGDMMTLLMKK---DTLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFG  146 (363)
T ss_pred             -CeEEEEEcCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCCEEEeecc
Confidence             4789999999999999998753   468999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhccc---C-CCC-------------------CcccccceeeecCCcceeeeeeccCCCcCCceeehhHHH
Q 044236          596 ISIIMEEHEKLEAK---G-EGP-------------------KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL  652 (747)
Q Consensus       596 la~~~~~~~~~~~~---~-~~~-------------------~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl  652 (747)
                      +++...........   . ..+                   .........+++..|+|||++....++.++|||||||++
T Consensus       147 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil  226 (363)
T cd05628         147 LCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIM  226 (363)
T ss_pred             CcccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHH
Confidence            99765322110000   0 000                   000001124678899999999888999999999999999


Q ss_pred             HHHhhCCCCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhH--ccCCCCCCCCCHHHHHHH
Q 044236          653 LESLVGPIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNK--CICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       653 ~Elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~--Cl~~dP~~RPs~~evl~~  726 (747)
                      |||++|+.||....... ...+.....     ....|.. ...+++    +.+++.+  |...++..||++.||+++
T Consensus       227 ~ell~G~~Pf~~~~~~~~~~~i~~~~~-----~~~~p~~-~~~s~~----~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         227 YEMLIGYPPFCSETPQETYKKVMNWKE-----TLIFPPE-VPISEK----AKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHcCcC-----cccCCCc-CCCCHH----HHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            99999999997544322 222221110     0111110 112333    4455554  333445567999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=2.5e-36  Score=310.94  Aligned_cols=249  Identities=22%  Similarity=0.336  Sum_probs=195.8

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .+|++.+.||+|+||.||+|... |..||+|.++...  ..+.+.+|+.++++++|+||+++++++...       ....
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-------~~~~   75 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEE-------KGGL   75 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcC-------CCce
Confidence            46888899999999999999875 7789999886432  346788999999999999999999987643       2368


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.++++... ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~  151 (256)
T cd05082          76 YIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  151 (256)
T ss_pred             EEEEECCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccccchheEEEcCCCcEEecCCcccee
Confidence            99999999999999987542 3358899999999999999999998   7899999999999999999999999999865


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .......               ......|++||......++.++|||||||++|||++ |+.|+................
T Consensus       152 ~~~~~~~---------------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~  216 (256)
T cd05082         152 ASSTQDT---------------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGY  216 (256)
T ss_pred             ccccCCC---------------CccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCC
Confidence            4321110               011235788888888889999999999999999998 888887544333222211110


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                              .+.....+    +..+.+++.+||+.+|++|||+.++++.|+.
T Consensus       217 --------~~~~~~~~----~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  255 (256)
T cd05082         217 --------KMDAPDGC----PPVVYDVMKQCWHLDAATRPSFLQLREQLEH  255 (256)
T ss_pred             --------CCCCCCCC----CHHHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence                    01111222    3448899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=1.1e-36  Score=324.64  Aligned_cols=241  Identities=20%  Similarity=0.237  Sum_probs=188.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      +|.+.+.||+|+||.||+|+. .+++.||||+++...   ....+.+..|..++..+ +|++|+++++++...       
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-------   73 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTM-------   73 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecC-------
Confidence            578889999999999999985 468899999987432   22344567788888777 589999999888663       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~E~~~~g~L~~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kL~DfG  146 (323)
T cd05616          74 -DRLYFVMEYVNGGDLMYQIQQV---GRFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFG  146 (323)
T ss_pred             -CEEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEecCCCHHHeEECCCCcEEEccCC
Confidence             4789999999999999888653   458899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++........            ....+++..|+|||.+....++.++|||||||++|||+||+.||.......+.....
T Consensus       147 ~~~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~  214 (323)
T cd05616         147 MCKENMWDGVT------------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM  214 (323)
T ss_pred             CceecCCCCCc------------cccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            98643211100            011345678899999998899999999999999999999999997654433222111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF  720 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  720 (747)
                      ..  .       ..    ++......+.+++.+|++.||.+|++.
T Consensus       215 ~~--~-------~~----~p~~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         215 EH--N-------VA----YPKSMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             hC--C-------CC----CCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence            10  0       11    112223447899999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.1e-36  Score=330.22  Aligned_cols=253  Identities=18%  Similarity=0.213  Sum_probs=194.8

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ..++|++.+.||+|+||.||+|+. .+++.||+|++....   ......+.+|+.+++.++||||+++++++...     
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~-----  115 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDD-----  115 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecC-----
Confidence            457899999999999999999985 568999999997432   23345678899999999999999999988763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...    .++...+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus       116 ---~~~~lv~Ey~~gg~L~~~l~~~----~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~kL~D  185 (370)
T cd05596         116 ---KYLYMVMEYMPGGDLVNLMSNY----DIPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLAD  185 (370)
T ss_pred             ---CEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEcCCCCEEEEe
Confidence               4799999999999999988642    47778888899999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc----CCCcCCceeehhHHHHHHhhCCCCCCCChhhh
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ----RTKLEDDVYNFGFILLESLVGPIVTGKGEAFL  669 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~----~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~  669 (747)
                      ||+++.........           .....++..|+|||++...    .++.++|||||||++|||++|+.||.......
T Consensus       186 fG~~~~~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~  254 (370)
T cd05596         186 FGTCMKMDANGMVR-----------CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG  254 (370)
T ss_pred             ccceeeccCCCccc-----------CCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHH
Confidence            99987543221100           0112456788899987543    47899999999999999999999987554322


Q ss_pred             -HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCC--CCCHHHHHHH
Q 044236          670 -LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS--RPSFEDVLWN  726 (747)
Q Consensus       670 -~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~  726 (747)
                       ...+..   .......  |   .  ....+..+.+++.+|++.+|.+  ||++.|++..
T Consensus       255 ~~~~i~~---~~~~~~~--~---~--~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         255 TYSKIMD---HKNSLTF--P---D--DIEISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             HHHHHHc---CCCcCCC--C---C--cCCCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence             222211   0000000  1   0  0112344788999999999998  9999999764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1e-36  Score=326.35  Aligned_cols=250  Identities=20%  Similarity=0.261  Sum_probs=191.0

Q ss_pred             CCCccccccCCCCeeEEEEEe----CCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~  511 (747)
                      +|++.+.||+|+||.||+++.    .+++.||+|+++...    ....+.+..|+.++++++ ||||+++++++...   
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~---   77 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTE---   77 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecC---
Confidence            578889999999999999974    358899999987422    223456788999999995 99999999888653   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                           ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||
T Consensus        78 -----~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nili~~~~~~kl  146 (332)
T cd05614          78 -----AKLHLILDYVSGGEMFTHLYQR---DNFSEDEVRFYSGEIILALEHLHK---LGIVYRDIKLENILLDSEGHVVL  146 (332)
T ss_pred             -----CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHeEECCCCCEEE
Confidence                 4789999999999999988653   458899999999999999999999   88999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh-hh
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA-FL  669 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~  669 (747)
                      +|||+++.........           ....+++..|++||.+... .++.++|||||||++|||+||+.||..... ..
T Consensus       147 ~DfG~~~~~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~  215 (332)
T cd05614         147 TDFGLSKEFLSEEKER-----------TYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNT  215 (332)
T ss_pred             eeCcCCccccccCCCc-----------cccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCC
Confidence            9999987543221110           0113467788999988764 478899999999999999999999863221 11


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      ...+.....      ..++.+....    ...+.+++.+||+.||++||     ++.++++
T Consensus       216 ~~~~~~~~~------~~~~~~~~~~----~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         216 QSEVSRRIL------KCDPPFPSFI----GPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             HHHHHHHHh------cCCCCCCCCC----CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            111111000      0112222222    33478899999999999999     7778875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=3.5e-36  Score=312.04  Aligned_cols=258  Identities=19%  Similarity=0.322  Sum_probs=197.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CC---cEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NG---TYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g---~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|+..+.||+|+||.||+|+.. ++   ..+|+|.++.. .....+.+..|++++++++||||+++++++...     
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   78 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKF-----   78 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccC-----
Confidence            356788899999999999999853 33   37999998744 233456788999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...  ...++|..+..++.|++.|++|||+   .+++||||||+||+++.++.+||+|
T Consensus        79 ---~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~Nili~~~~~~kl~d  150 (268)
T cd05063          79 ---KPAMIITEYMENGALDKYLRDH--DGEFSSYQLVGMLRGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSD  150 (268)
T ss_pred             ---CCcEEEEEcCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEEcCCCcEEECC
Confidence               3689999999999999998753  3458999999999999999999999   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++.............   .      ......|++||.+....++.++|||||||++||+++ |..|+..........
T Consensus       151 fg~~~~~~~~~~~~~~~~---~------~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~  221 (268)
T cd05063         151 FGLSRVLEDDPEGTYTTS---G------GKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMK  221 (268)
T ss_pred             Cccceecccccccceecc---C------CCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHH
Confidence            999876543221110000   0      001224778888888889999999999999999998 988886443322221


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      .....  .   ..  +     .+......+.+++.+||+.+|++||++.+|++.|+.+
T Consensus       222 ~i~~~--~---~~--~-----~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         222 AINDG--F---RL--P-----APMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             HHhcC--C---CC--C-----CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            11110  0   00  0     0112234488999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=2.4e-36  Score=313.13  Aligned_cols=259  Identities=17%  Similarity=0.264  Sum_probs=200.5

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+ ..+++.+|||.+...   ......++.+|+.+++.++||||+++++++...       
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-------   74 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED-------   74 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeC-------
Confidence            467888999999999999999 467899999988643   223446788999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       +..++||||+++++|.+++... .....++|..+..++.|++.||+|||+   .+++|+||||+||+++.++.++|+||
T Consensus        75 -~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~df  150 (267)
T cd08229          75 -NELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDL  150 (267)
T ss_pred             -CeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEECcc
Confidence             4789999999999999988642 123468999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.........            ....+...|++||......++.++|||||||++|||++|..|+............
T Consensus       151 g~~~~~~~~~~~~------------~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~  218 (267)
T cd08229         151 GLGRFFSSKTTAA------------HSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCK  218 (267)
T ss_pred             hhhhccccCCccc------------ccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhh
Confidence            9986543221110            0123445678888887888899999999999999999999888643322111111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ...      ....+...   +......+.+++.+||+.+|.+||||.+|++.++++
T Consensus       219 ~~~------~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         219 KIE------QCDYPPLP---SDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             hhh------cCCCCCCC---cccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence            110      00111111   122344588999999999999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=3.6e-36  Score=310.55  Aligned_cols=254  Identities=22%  Similarity=0.329  Sum_probs=198.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|..++++.||+|.+.... ....++.+|+.++++++|+||+++++++..         ..
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---------~~   74 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLYAVVTQ---------EP   74 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHHHHhcCCcCeeeEEEEEcc---------CC
Confidence            35688899999999999999998889999999987433 345688999999999999999999988643         25


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+   .+++||||||+||+++.++.++|+|||+++
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          75 IYIITEYMENGSLVDFLKTPE-GIKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             cEEEEEcCCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHHhEEEcCCCCEEEccCccee
Confidence            799999999999999886532 3468999999999999999999998   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ............           ..+...|.+||.+....++.++|||||||++||+++ |+.||...............
T Consensus       151 ~~~~~~~~~~~~-----------~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~  219 (260)
T cd05067         151 LIEDNEYTAREG-----------AKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERG  219 (260)
T ss_pred             ecCCCCcccccC-----------CcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcC
Confidence            654221111000           112245778888888888999999999999999999 89998654432222111110


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      .        ........    ..++.+++.+||+.+|++||+++++...|+.
T Consensus       220 ~--------~~~~~~~~----~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         220 Y--------RMPRPDNC----PEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             C--------CCCCCCCC----CHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            0        01111122    2348999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.2e-36  Score=325.67  Aligned_cols=251  Identities=20%  Similarity=0.287  Sum_probs=194.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||+++...   ....+.+.+|+.+++.++||||+++++++...       
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~-------   73 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDK-------   73 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecC-------
Confidence            4688899999999999999984 568999999998532   23445688899999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~qi~~aL~~lH~---~~i~H~Dlkp~NIll~~~~~~kL~Dfg  147 (330)
T cd05601          74 -DNLYLVMEYQPGGDLLSLLNRY--EDQFDEDMAQFYLAELVLAIHSVHQ---MGYVHRDIKPENVLIDRTGHIKLADFG  147 (330)
T ss_pred             -CeEEEEECCCCCCCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEcccCchHheEECCCCCEEeccCC
Confidence             4789999999999999999764  3468999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeee------ccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD------IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-  668 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-  668 (747)
                      +++..........           ....++..|++||++.      ...++.++|||||||++|||++|+.||...... 
T Consensus       148 ~a~~~~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~  216 (330)
T cd05601         148 SAARLTANKMVNS-----------KLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK  216 (330)
T ss_pred             CCeECCCCCceee-----------ecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHH
Confidence            9976543221100           0123456788888876      456789999999999999999999999754332 


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....+...   .......+       .......+.+++..|+. +|++|||+.+++.
T Consensus       217 ~~~~i~~~---~~~~~~~~-------~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         217 TYNNIMNF---QRFLKFPE-------DPKVSSDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             HHHHHHcC---CCccCCCC-------CCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence            22222111   11011111       01123347889999998 9999999999985

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.6e-36  Score=311.81  Aligned_cols=239  Identities=21%  Similarity=0.335  Sum_probs=183.3

Q ss_pred             ccccCCCCeeEEEEEeCC-------------CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          446 SFMGEGSRGKLYKGRLEN-------------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~-------------g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      +.||+|+||.||+|++..             ...||+|.+..........+.+|+.+++.++||||+++++++...    
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~----   76 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRD----   76 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecC----
Confidence            358999999999998532             235888988755555556788899999999999999999998763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc----
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI----  588 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~----  588 (747)
                          ...++||||+++|+|..++...  ...+++..+..++.||++||+|||+   .+|+||||||+|||++.++.    
T Consensus        77 ----~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~~~~  147 (262)
T cd05077          77 ----VENIMVEEFVEFGPLDLFMHRK--SDVLTTPWKFKVAKQLASALSYLED---KDLVHGNVCTKNILLAREGIDGEC  147 (262)
T ss_pred             ----CCCEEEEecccCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHhhh---CCeECCCCCcccEEEecCCccCCC
Confidence                3679999999999999888653  3458999999999999999999999   89999999999999987664    


Q ss_pred             ---EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHh-hCCCCCC
Q 044236          589 ---AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESL-VGPIVTG  663 (747)
Q Consensus       589 ---~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Ell-tg~~p~~  663 (747)
                         +|++|||++........                ..++.+|++||.+. ...++.++|||||||++|||+ +|+.|+.
T Consensus       148 ~~~~~l~d~g~~~~~~~~~~----------------~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~  211 (262)
T cd05077         148 GPFIKLSDPGIPITVLSRQE----------------CVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLK  211 (262)
T ss_pred             CceeEeCCCCCCccccCccc----------------ccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence               89999999865422110                12345688899776 456889999999999999998 5788876


Q ss_pred             CChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ............   .  .....     ..    ....+.+++.+||+.||.+||++.+|++.+
T Consensus       212 ~~~~~~~~~~~~---~--~~~~~-----~~----~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         212 DKTLAEKERFYE---G--QCMLV-----TP----SCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             CcchhHHHHHHh---c--CccCC-----CC----ChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            443222222111   0  00011     11    123478999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=8.5e-37  Score=324.86  Aligned_cols=238  Identities=25%  Similarity=0.312  Sum_probs=186.6

Q ss_pred             ccccCCCCeeEEEEEe----CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          446 SFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      +.||+|+||.||+++.    .+|+.||+|+++...  ......+.+|++++++++||||+++++++...        ...
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--------~~~   73 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTE--------GKL   73 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcC--------CEE
Confidence            5799999999999874    358999999997532  22345567899999999999999999998763        478


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++..   ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        74 ~lv~e~~~~~~L~~~l~~---~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  147 (318)
T cd05582          74 YLILDFLRGGDLFTRLSK---EVMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKE  147 (318)
T ss_pred             EEEEcCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHeEECCCCcEEEeeccCCcc
Confidence            999999999999999865   3458999999999999999999999   8899999999999999999999999999865


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      ........            ....++..|++||.+....++.++|||||||++|||++|+.||................ 
T Consensus       148 ~~~~~~~~------------~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~-  214 (318)
T cd05582         148 SIDHEKKA------------YSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAK-  214 (318)
T ss_pred             cCCCCCce------------ecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCC-
Confidence            43221100            01345667899999888889999999999999999999999987544322221111000 


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED  722 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~e  722 (747)
                              ..+    +......+.+++.+||+.||++||++.+
T Consensus       215 --------~~~----p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         215 --------LGM----PQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             --------CCC----CCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence                    011    1122334788999999999999999544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=4.5e-36  Score=310.10  Aligned_cols=254  Identities=20%  Similarity=0.337  Sum_probs=189.4

Q ss_pred             ccccCCCCeeEEEEEeC----CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRLE----NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|+..    .+..||||.+... .....+.+.+|+.+++.++||||++++++|...+       ...+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-------~~~~   73 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSE-------GSPL   73 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCC-------CCcE
Confidence            46899999999999842    2467999988643 3344578889999999999999999999876422       3578


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+
T Consensus        74 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~  148 (262)
T cd05058          74 VVLPYMKHGDLRNFIRSE--THNPTVKDLIGFGLQVAKGMEYLAS---KKFVHRDLAARNCMLDESFTVKVADFGLARDI  148 (262)
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCccccccc
Confidence            999999999999998753  2346788889999999999999998   78999999999999999999999999998755


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHHHHhccCc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      ...........        ....++..|++||.+....++.++|||||||++|||++| .+|+...............  
T Consensus       149 ~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~--  218 (262)
T cd05058         149 YDKEYYSVHNH--------TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQG--  218 (262)
T ss_pred             cCCcceeeccc--------ccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcC--
Confidence            33211100000        001123357788888888899999999999999999996 5566543322221111110  


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                       .     .+.....++    ..+.+++.+||+.+|++||++.||+.+|+.+.
T Consensus       219 -~-----~~~~~~~~~----~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         219 -R-----RLLQPEYCP----DPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             -C-----CCCCCCcCC----HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence             0     011111122    34889999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.8e-36  Score=317.11  Aligned_cols=270  Identities=22%  Similarity=0.323  Sum_probs=196.2

Q ss_pred             CCCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .|++.+.||+|+||.||+++.     .++..||+|.++... ......+.+|++++++++||||+++++++...+     
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   79 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDG-----   79 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCC-----
Confidence            467889999999999999974     347889999987442 334467899999999999999999999887632     


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       ....++||||+++++|.+++...  ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        80 -~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~i~~~i~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~~l~df  153 (284)
T cd05079          80 -GNGIKLIMEFLPSGSLKEYLPRN--KNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDF  153 (284)
T ss_pred             -CCceEEEEEccCCCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccchheEEEcCCCCEEECCC
Confidence             24689999999999999998653  3358999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++............         ....+...|++||.+....++.++|||||||++|||+|++.|.............
T Consensus       154 g~~~~~~~~~~~~~~~---------~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~  224 (284)
T cd05079         154 GLTKAIETDKEYYTVK---------DDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIG  224 (284)
T ss_pred             ccccccccCccceeec---------CCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcc
Confidence            9997654322111000         0112334577888887788999999999999999999986654321110000000


Q ss_pred             hccCcCCc---cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          675 SFGSQDGR---RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       675 ~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ........   ............+...+..+.+++.+||+.+|.+|||+.++++.|+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         225 PTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             cccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            00000000   000000000011122344589999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.2e-36  Score=331.38  Aligned_cols=255  Identities=16%  Similarity=0.146  Sum_probs=190.2

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .+|++.+.||+|+||.||+|+ ..+++.||+|...      ...+.+|++++++++|||||++++++...        ..
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~--------~~  157 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYN--------KF  157 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEEC--------Ce
Confidence            579999999999999999998 4678999999754      23567899999999999999999998763        37


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+. ++|..++...   ..+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+|+
T Consensus       158 ~~lv~e~~~-~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~ylH~---~~IvHrDiKP~NIll~~~~~vkL~DFG~a~  230 (391)
T PHA03212        158 TCLILPRYK-TDLYCYLAAK---RNIAICDILAIERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAAC  230 (391)
T ss_pred             eEEEEecCC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHhEEEcCCCCEEEEeCCccc
Confidence            899999995 6888887653   458899999999999999999999   789999999999999999999999999996


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh--------hhhH
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE--------AFLL  670 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~--------~~~~  670 (747)
                      ........           ......++..|++||++....++.++|||||||++|||+||+.|+-...        ...+
T Consensus       231 ~~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l  299 (391)
T PHA03212        231 FPVDINAN-----------KYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQI  299 (391)
T ss_pred             cccccccc-----------ccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHH
Confidence            53221110           0111356778899999988889999999999999999999976543211        1111


Q ss_pred             HHHHhccCcCCc----------cc---------cccccccCCC--CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          671 NEMASFGSQDGR----------RR---------IVDPVVLTTC--SQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       671 ~~~~~~~~~~~~----------~~---------~~d~~~~~~~--~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..+.........          ..         ...+.....+  .......+.+++.+||+.||.+|||+.|+++.
T Consensus       300 ~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~h  376 (391)
T PHA03212        300 KLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDF  376 (391)
T ss_pred             HHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            111111000000          00         0000000000  01234468899999999999999999999863

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=7.9e-37  Score=326.28  Aligned_cols=244  Identities=18%  Similarity=0.242  Sum_probs=185.9

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|+. .+++.||+|+++..   .......+.+|+.++.++ +|||||++++++...        +..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~--------~~~~   72 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE--------SRLF   72 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeC--------CEEE
Confidence            3689999999999995 56899999999753   223445677898888776 799999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~E~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~  146 (329)
T cd05618          73 FVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  146 (329)
T ss_pred             EEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCCEEEeeCCccccc
Confidence            999999999999888653   458999999999999999999999   88999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh------hhhHHHHH
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE------AFLLNEMA  674 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~------~~~~~~~~  674 (747)
                      ......            .....++..|++||++....++.++|||||||++|||++|+.||....      ........
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~  214 (329)
T cd05618         147 LRPGDT------------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLF  214 (329)
T ss_pred             cCCCCc------------cccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHH
Confidence            211100            011345678899999988889999999999999999999999985211      00011111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC------HHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS------FEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs------~~evl~  725 (747)
                      ......      ...+    +......+.+++.+||+.||++||+      +.++++
T Consensus       215 ~~i~~~------~~~~----p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05618         215 QVILEK------QIRI----PRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG  261 (329)
T ss_pred             HHHhcC------CCCC----CCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhc
Confidence            100000      0011    2222344789999999999999998      467654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=5.1e-36  Score=311.04  Aligned_cols=254  Identities=20%  Similarity=0.223  Sum_probs=186.0

Q ss_pred             ccccCCCCeeEEEEEeCC---CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          446 SFMGEGSRGKLYKGRLEN---GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~---g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      +.||+|+||.||+|+..+   +..+|+|.++... ......+.+|+.++++++||||+++++++.+.        ...++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~~~~l   72 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEV--------TPYLL   72 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC--------CCcEE
Confidence            358999999999998543   4679999887543 23345788899999999999999999998763        36799


Q ss_pred             EEeccCCCCcccccccCC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          522 VYEYIPNGSYRAHLSENC--PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ||||+++|+|.++++...  .....++..+..++.|+++||+|||+   .+++||||||+||+++.++.+||+|||+++.
T Consensus        73 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~  149 (269)
T cd05087          73 VMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK---NNFIHSDLALRNCLLTADLTVKIGDYGLSHN  149 (269)
T ss_pred             EEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEECCcccccc
Confidence            999999999999987532  12346778888999999999999999   8899999999999999999999999999865


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeecc-------CCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHH
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-------RTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLN  671 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-------~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~  671 (747)
                      ..........          ....++..|++||++...       .++.++|||||||++|||++ |+.||.........
T Consensus       150 ~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~  219 (269)
T cd05087         150 KYKEDYYVTP----------DQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVL  219 (269)
T ss_pred             ccCcceeecC----------CCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHH
Confidence            4322111000          001223457788876532       35789999999999999996 99888654332221


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ....   ........++.+....+.    .+.+++.+|| .+|++|||++||++.|+
T Consensus       220 ~~~~---~~~~~~~~~~~~~~~~~~----~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         220 TYTV---REQQLKLPKPRLKLPLSD----RWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             HHHh---hcccCCCCCCccCCCCCh----HHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            1111   111112223322222223    3778899999 68999999999998875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.9e-36  Score=316.12  Aligned_cols=246  Identities=15%  Similarity=0.181  Sum_probs=187.9

Q ss_pred             ccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          448 MGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       448 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ||+|+||+||++.. .+|+.||||++....   ....+.+..|++++++++||||+++.+++...        ...++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~--------~~~~lv~   72 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTK--------TDLCLVM   72 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCC--------CeEEEEE
Confidence            69999999999984 578999999987432   22335677899999999999999999888663        4789999


Q ss_pred             eccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccc
Q 044236          524 EYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE  602 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  602 (747)
                      |||++|+|..++.... ....+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....
T Consensus        73 e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  149 (280)
T cd05608          73 TIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKD  149 (280)
T ss_pred             eCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCccceecCC
Confidence            9999999988774321 23468999999999999999999999   8999999999999999999999999999865433


Q ss_pred             cchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhccCcCC
Q 044236          603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASFGSQDG  681 (747)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~~~~~~  681 (747)
                      .....            ....++..|++||.+....++.++|||||||++|||++|+.||....... ........... 
T Consensus       150 ~~~~~------------~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~-  216 (280)
T cd05608         150 GQSKT------------KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILND-  216 (280)
T ss_pred             CCccc------------cccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhccc-
Confidence            21110            01235567899999988899999999999999999999999986433211 11111110000 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHH
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWN  726 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  726 (747)
                            +   ...+......+.+++.+||+.||++||     ++++++++
T Consensus       217 ------~---~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h  257 (280)
T cd05608         217 ------S---VTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTH  257 (280)
T ss_pred             ------C---CCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcC
Confidence                  0   011222334488999999999999999     66777753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.9e-36  Score=321.54  Aligned_cols=240  Identities=23%  Similarity=0.292  Sum_probs=186.5

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhc-CCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSK-LQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~-l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||+||+|+. .+++.||||+++...   ......+..|..++.. ++||||+++++++...        ...+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~--------~~~~   72 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTK--------ENLF   72 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeC--------CEEE
Confidence            3689999999999995 458899999997532   2334556778888876 4899999999998763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~ey~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~  146 (316)
T cd05619          73 FVMEYLNGGDLMFHIQSC---HKFDLPRATFYAAEIICGLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKEN  146 (316)
T ss_pred             EEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEccCCcceEC
Confidence            999999999999998752   458899999999999999999999   89999999999999999999999999998642


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      .....            ......++..|++||.+....++.++|||||||++|||++|+.||...............   
T Consensus       147 ~~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~---  211 (316)
T cd05619         147 MLGDA------------KTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMD---  211 (316)
T ss_pred             CCCCC------------ceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhC---
Confidence            11110            001134567889999998888999999999999999999999998755433222221111   


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH-HHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE-DVL  724 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~-evl  724 (747)
                            .+.....    ....+.+++.+||+.||.+||++. ++.
T Consensus       212 ------~~~~~~~----~~~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         212 ------NPCYPRW----LTREAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             ------CCCCCcc----CCHHHHHHHHHHhccCHhhcCCChHHHH
Confidence                  1111111    223478899999999999999997 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.7e-36  Score=316.53  Aligned_cols=262  Identities=20%  Similarity=0.328  Sum_probs=193.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC---------------CcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeee
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN---------------GTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLG  503 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~---------------g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g  503 (747)
                      ++|++.+.||+|+||.||+++...               ...||||.++.. .......+.+|++++++++||||+++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            578889999999999999987532               235899998743 2334467899999999999999999999


Q ss_pred             eeeccCCCCCCCCceEEEEEeccCCCCcccccccCC---------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccC
Q 044236          504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC---------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSN  574 (747)
Q Consensus       504 ~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHr  574 (747)
                      ++...        ...++||||+++++|.+++....         ....++|..++.++.|+++||+|||+   .+++||
T Consensus        85 ~~~~~--------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~  153 (295)
T cd05097          85 VCVSD--------DPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS---LNFVHR  153 (295)
T ss_pred             EEcCC--------CccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHh---cCeecc
Confidence            98763        36899999999999999885421         11247899999999999999999999   789999


Q ss_pred             CCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHH
Q 044236          575 RLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE  654 (747)
Q Consensus       575 Dlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~E  654 (747)
                      ||||+||+++.++.+||+|||+++...........+.          ......|++||......++.++|||||||++||
T Consensus       154 dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~e  223 (295)
T cd05097         154 DLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGR----------AVLPIRWMAWESILLGKFTTASDVWAFGVTLWE  223 (295)
T ss_pred             ccChhhEEEcCCCcEEecccccccccccCcceeccCc----------CcCceeecChhhhccCCcCchhhHHHHHHHHHH
Confidence            9999999999999999999999875432221111000          012346788888888889999999999999999


Q ss_pred             Hhh--CCCCCCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          655 SLV--GPIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       655 llt--g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      |++  |..|+..... ..+................  .....++    ..+.+++.+||+.+|++||||.+|++.|+
T Consensus       224 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         224 MFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYL--SQTPLCP----SPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHcCCCCCCcccChHHHHHHHHHhhhhccccccC--CCCCCCC----HHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            998  4667654322 2222221111111000000  0111122    35899999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2.3e-36  Score=321.43  Aligned_cols=241  Identities=19%  Similarity=0.213  Sum_probs=189.3

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||+||+|+. .+++.||||+++...   ......+.+|.++++.+ +||||+++++++...        +..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~--------~~~~   72 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTK--------DRLF   72 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcC--------CEEE
Confidence            3689999999999985 458899999997432   23445677899999887 699999999988763        4799


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  146 (318)
T cd05570          73 FVMEYVNGGDLMFHIQRS---GRFDEPRARFYAAEIVLGLQFLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEG  146 (318)
T ss_pred             EEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEccCCCHHHeEECCCCcEEecccCCCeec
Confidence            999999999999888653   358999999999999999999999   89999999999999999999999999998642


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ......            ....+++..|++||.+....++.++|||||||++|||++|+.||...............   
T Consensus       147 ~~~~~~------------~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~---  211 (318)
T cd05570         147 ILGGVT------------TSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILED---  211 (318)
T ss_pred             CcCCCc------------ccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcC---
Confidence            111100            01134567889999998889999999999999999999999999755433322211100   


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH-----HHHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF-----EDVLW  725 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~-----~evl~  725 (747)
                            .+.....    ....+.+++.+||+.||.+||++     .+++.
T Consensus       212 ------~~~~~~~----~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         212 ------EVRYPRW----LSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             ------CCCCCCc----CCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence                  0111112    23348899999999999999999     77765

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2e-36  Score=321.36  Aligned_cols=240  Identities=20%  Similarity=0.278  Sum_probs=186.9

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhc-CCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSK-LQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~-l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|+. .+|+.||||+++...   ....+.+..|..++.. .+||||+++++++...        +..+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~--------~~~~   72 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTK--------EHLF   72 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeC--------CEEE
Confidence            4689999999999995 468999999997432   2334566778888875 4899999999998763        4899


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++...   ..+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~E~~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~  146 (316)
T cd05620          73 FVMEFLNGGDLMFHIQDK---GRFDLYRATFYAAEIVCGLQFLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKEN  146 (316)
T ss_pred             EEECCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEeCccCCCeec
Confidence            999999999999988653   458899999999999999999999   89999999999999999999999999998632


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      .....            .....+++..|+|||++....++.++|||||||++|||++|+.||...+.....+.....   
T Consensus       147 ~~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~---  211 (316)
T cd05620         147 VFGDN------------RASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVD---  211 (316)
T ss_pred             ccCCC------------ceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhC---
Confidence            11110            011234677889999998889999999999999999999999998755443322222111   


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH-HHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE-DVL  724 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~-evl  724 (747)
                            .+.+...+    ...+.+++.+||+.||++||++. ++.
T Consensus       212 ------~~~~~~~~----~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         212 ------TPHYPRWI----TKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             ------CCCCCCCC----CHHHHHHHHHHccCCHHHcCCChHHHH
Confidence                  11111122    23478899999999999999985 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=4.6e-36  Score=317.68  Aligned_cols=261  Identities=20%  Similarity=0.314  Sum_probs=200.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeC--------CCcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE--------NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESG  509 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~  509 (747)
                      ++|.+.+.||+|+||.||+|+..        ++..+|+|.++.. .......+.+|+++++++ +||||++++++|... 
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~-   96 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD-   96 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC-
Confidence            56888999999999999999742        2357999998743 233456788899999999 799999999998763 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                             ...++||||+++|+|.+++....+             ...++|.+++.++.|++.||+|||+   .+++||||
T Consensus        97 -------~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H~dl  166 (307)
T cd05098          97 -------GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS---KKCIHRDL  166 (307)
T ss_pred             -------CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCcccccc
Confidence                   378999999999999999975321             2358999999999999999999998   89999999


Q ss_pred             CCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHh
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ell  656 (747)
                      ||+||+++.++.+||+|||+++............   .       ......|++||.+....++.++|||||||++|||+
T Consensus       167 kp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~---~-------~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~  236 (307)
T cd05098         167 AARNVLVTEDNVMKIADFGLARDIHHIDYYKKTT---N-------GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIF  236 (307)
T ss_pred             cHHheEEcCCCcEEECCCcccccccccchhhccc---c-------CCCccceeChHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999987553221111000   0       01123578888887888999999999999999999


Q ss_pred             h-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          657 V-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       657 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      + |..|+.......+.......   ..         ...+......+.+++.+||..+|.+|||+.+|++.|+.+...
T Consensus       237 ~~g~~p~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         237 TLGGSPYPGVPVEELFKLLKEG---HR---------MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             cCCCCCCCcCCHHHHHHHHHcC---CC---------CCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            8 78888655443332222211   00         011122234588899999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=3e-36  Score=314.19  Aligned_cols=257  Identities=22%  Similarity=0.294  Sum_probs=196.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|.+.+.||+|+||.||+|...      .+..||+|.+.... ......+.+|+.++++++|+||+++++++.+.   
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~---   81 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFER---   81 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC---
Confidence            467889999999999999999864      36789999886433 33446789999999999999999999988763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCP----ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                           ...++||||+++|+|.+++.....    ...++|..++.++.||+.||+|||+   .+++||||||+||+++.++
T Consensus        82 -----~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~nil~~~~~  153 (277)
T cd05036          82 -----LPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKG  153 (277)
T ss_pred             -----CCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchheEEEeccC
Confidence                 357999999999999999875421    1358999999999999999999999   7899999999999998654


Q ss_pred             ---cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCC
Q 044236          588 ---IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTG  663 (747)
Q Consensus       588 ---~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~  663 (747)
                         .+||+|||+++........... .  .       ......|++||.+....++.++|||||||++|||++ |..||.
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~~~~~-~--~-------~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~  223 (277)
T cd05036         154 PGRVAKIADFGMARDIYRASYYRKG-G--R-------AMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYP  223 (277)
T ss_pred             CCcceEeccCccccccCCccceecC-C--C-------CCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCC
Confidence               6999999999765322110000 0  0       011235788898888889999999999999999997 888887


Q ss_pred             CChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ..............  ..      +.....+    +..+.+++.+||+.+|++||++.+|++.|+
T Consensus       224 ~~~~~~~~~~~~~~--~~------~~~~~~~----~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         224 GRTNQEVMEFVTGG--GR------LDPPKGC----PGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             CCCHHHHHHHHHcC--Cc------CCCCCCC----CHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            54333222221111  00      0111222    345889999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=2.7e-36  Score=317.78  Aligned_cols=262  Identities=21%  Similarity=0.322  Sum_probs=193.3

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-----------------CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCccee
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-----------------NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSL  501 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-----------------~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l  501 (747)
                      ++|++.+.||+|+||.||+++..                 ++..||+|++... ......++.+|++++++++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            56889999999999999998532                 2457899998743 23345678999999999999999999


Q ss_pred             eeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 044236          502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFS  573 (747)
Q Consensus       502 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~--------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH  573 (747)
                      ++++...        ...++||||+++|+|.+++.....        ...+++.....++.|++.||+|||+   .+|+|
T Consensus        85 ~~~~~~~--------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H  153 (296)
T cd05095          85 LAVCITS--------DPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFVH  153 (296)
T ss_pred             EEEEecC--------CccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCeec
Confidence            9998763        368999999999999998875321        1347888999999999999999999   78999


Q ss_pred             CCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHH
Q 044236          574 NRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILL  653 (747)
Q Consensus       574 rDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~  653 (747)
                      |||||+||+++.++.+||+|||+++.+.........+.          ......+++||......++.++|||||||++|
T Consensus       154 ~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~----------~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~  223 (296)
T cd05095         154 RDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGR----------AVLPIRWMSWESILLGKFTTASDVWAFGVTLW  223 (296)
T ss_pred             ccCChheEEEcCCCCEEeccCcccccccCCcceeccCc----------CcCccccCCHHHHhcCCccchhhhhHHHHHHH
Confidence            99999999999999999999999875533211110000          01123466777766778999999999999999


Q ss_pred             HHhh--CCCCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          654 ESLV--GPIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       654 Ellt--g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ||++  |..|+....... ............... ..+ ....++    ..+.+++.+||+.||.+||++.||++.|+
T Consensus       224 el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~----~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         224 EILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQV-YLP-KPALCP----DSLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHhCCCCCccccChHHHHHHHHHHHhhccccc-cCC-CCCCCC----HHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            9998  567775433221 111111110110000 001 011222    45889999999999999999999999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=4.1e-36  Score=310.09  Aligned_cols=253  Identities=21%  Similarity=0.305  Sum_probs=196.0

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|.+...||+|+||.||+|....+..+|+|.+.... ...+.+.+|++++++++||||+++++++..         ...
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---------~~~   75 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVSE---------EPI   75 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEcC---------CCc
Confidence            4577888999999999999998777789999876432 334678899999999999999999988743         247


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.++++... ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        76 ~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~  151 (260)
T cd05069          76 YIVTEFMGKGSLLDFLKEGD-GKYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARL  151 (260)
T ss_pred             EEEEEcCCCCCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCeEEECCCccceE
Confidence            89999999999999997532 3458999999999999999999998   7899999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ..........           ...++..|++||......++.++|||||||++|||+| |+.|+................
T Consensus       152 ~~~~~~~~~~-----------~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~  220 (260)
T cd05069         152 IEDNEYTARQ-----------GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGY  220 (260)
T ss_pred             ccCCcccccC-----------CCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC
Confidence            5432211000           0112335778888878889999999999999999999 888886543322211111100


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                              .+.    .+...+..+.+++.+||+.||++||++++|++.|+.
T Consensus       221 --------~~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         221 --------RMP----CPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             --------CCC----CCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                    011    112233458899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=1.2e-36  Score=324.90  Aligned_cols=244  Identities=18%  Similarity=0.227  Sum_probs=186.9

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      ++||+|+||.||+|+. .+++.||||+++...   ......+.+|..++.++ +||||++++++|...        ...+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~--------~~~~   72 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTE--------SRLF   72 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcC--------CEEE
Confidence            3689999999999985 568999999997532   23345678899999988 799999999998763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~~g~L~~~~~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~  146 (329)
T cd05588          73 FVIEFVSGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  146 (329)
T ss_pred             EEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEECcCcccccc
Confidence            999999999999888653   468999999999999999999999   89999999999999999999999999998642


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh------hhHHHHH
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA------FLLNEMA  674 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~------~~~~~~~  674 (747)
                      .....            .....+++..|++||++....++.++|||||||++|||+||+.||.....      .......
T Consensus       147 ~~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~  214 (329)
T cd05588         147 IRPGD------------TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLF  214 (329)
T ss_pred             ccCCC------------ccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHH
Confidence            11110            00113566788999999888899999999999999999999999862110      0001111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC------HHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS------FEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs------~~evl~  725 (747)
                      ......      ...++..+    ...+.+++.+|++.||.+||+      +.++++
T Consensus       215 ~~~~~~------~~~~p~~~----~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05588         215 QVILEK------QIRIPRSL----SVKASSVLKGFLNKDPKERLGCHPQTGFRDIKS  261 (329)
T ss_pred             HHHHcC------CCCCCCCC----CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhc
Confidence            100000      01111222    334788999999999999997      677764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=6e-36  Score=309.96  Aligned_cols=259  Identities=17%  Similarity=0.277  Sum_probs=201.0

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|... +|+.||+|.++..   .....+.+.+|++++++++|+||+++++++...       
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~-------   74 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIEN-------   74 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecC-------
Confidence            57888999999999999999964 7999999988632   223356788999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       +..++||||+++|+|.+++.... ....+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.++|+||
T Consensus        75 -~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~nil~~~~~~~~l~d~  150 (267)
T cd08224          75 -NELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDL  150 (267)
T ss_pred             -CeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecCCcChhhEEECCCCcEEEecc
Confidence             47899999999999999886421 23458999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.........            ....++..|.+||.+....++.++|||||||++|||++|+.|+............
T Consensus       151 ~~~~~~~~~~~~~------------~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~  218 (267)
T cd08224         151 GLGRFFSSKTTAA------------HSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCK  218 (267)
T ss_pred             ceeeeccCCCccc------------ceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHh
Confidence            9987543221110            0112345677888888888999999999999999999999988644322111111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ... ...    ..+ ..   .......+.+++.+||..+|++|||+.+|+++|+.+
T Consensus       219 ~~~-~~~----~~~-~~---~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~  265 (267)
T cd08224         219 KIE-KCD----YPP-LP---ADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEM  265 (267)
T ss_pred             hhh-cCC----CCC-CC---hhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence            110 000    011 11   112334588999999999999999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=7.2e-36  Score=309.94  Aligned_cols=259  Identities=19%  Similarity=0.325  Sum_probs=196.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CC---cEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NG---TYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g---~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|+.. ++   ..||||.++.. .......|..|+.++++++||||+++++++...      
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~------   77 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKS------   77 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCC------
Confidence            35778899999999999999853 33   36999998743 334457899999999999999999999988653      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...  ...+++..++.++.|++.||+|||+   .+++||||||+||+++.++.+|++||
T Consensus        78 --~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~~l~~al~~lH~---~g~~H~dl~p~nili~~~~~~kl~df  150 (269)
T cd05065          78 --RPVMIITEFMENGALDSFLRQN--DGQFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDF  150 (269)
T ss_pred             --CceEEEEecCCCCcHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccChheEEEcCCCcEEECCC
Confidence              3689999999999999998754  3458999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |+++............. ...      ......|++||.+....++.++|||||||++||+++ |..|+...........
T Consensus       151 g~~~~~~~~~~~~~~~~-~~~------~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~  223 (269)
T cd05065         151 GLSRFLEDDTSDPTYTS-SLG------GKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINA  223 (269)
T ss_pred             ccccccccCcccccccc-ccC------CCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence            99876543221100000 000      001234778888888889999999999999999886 8888865443322221


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ...   ..     ......+++    ..+.+++.+||+.+|.+||++.+|+..|+.+
T Consensus       224 i~~---~~-----~~~~~~~~~----~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         224 IEQ---DY-----RLPPPMDCP----TALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             HHc---CC-----cCCCcccCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            111   00     011112233    3478899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=4.1e-36  Score=312.20  Aligned_cols=259  Identities=19%  Similarity=0.296  Sum_probs=195.9

Q ss_pred             HHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCC
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .+++.|+..+.||+|+||.||+|.. .+++.||+|.+.... .....+.+|+.+++++ +||||++++++|...+.+  .
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~--~   79 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP--G   79 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCC--C
Confidence            3567788889999999999999985 568999999987443 3346788999999998 699999999998764311  1


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++||||+++|+|.+++.... ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~~-~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivh~dl~~~nili~~~~~~~l~Df  155 (272)
T cd06637          80 MDDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDF  155 (272)
T ss_pred             CCcEEEEEEEcCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHEEECCCCCEEEccC
Confidence            1346899999999999999987532 3468999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL  669 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~  669 (747)
                      |+++.........            ....++..|.+||++.     ...++.++|||||||++|||++|+.|+.......
T Consensus       156 g~~~~~~~~~~~~------------~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~  223 (272)
T cd06637         156 GVSAQLDRTVGRR------------NTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR  223 (272)
T ss_pred             CCceecccccccC------------CcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHH
Confidence            9987653221110            0123455677888765     3457889999999999999999999886433221


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....  ... .......    ...+    ...+.+++.+||..+|.+|||+.|+++
T Consensus       224 ~~~~--~~~-~~~~~~~----~~~~----~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         224 ALFL--IPR-NPAPRLK----SKKW----SKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             HHHH--Hhc-CCCCCCC----CCCc----CHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            1111  100 0011111    1112    234889999999999999999999975

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=5.6e-36  Score=310.37  Aligned_cols=256  Identities=20%  Similarity=0.335  Sum_probs=196.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-C---CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-N---GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~---g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|+.. +   +..+|+|.++... ....+.+.+|+.++++++||||+++++++...      
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~------   77 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKS------   77 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC------
Confidence            46888899999999999999852 2   3479999886432 33456789999999999999999999998753      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..++||||+++|+|.+++...  ...+++.++..++.|++.||+|||+   .+++||||||+||+++.++.+|++||
T Consensus        78 --~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~h~dlkp~nili~~~~~~~l~df  150 (267)
T cd05066          78 --KPVMIVTEYMENGSLDAFLRKH--DGQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILVNSNLVCKVSDF  150 (267)
T ss_pred             --CccEEEEEcCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeehhhchhcEEECCCCeEEeCCC
Confidence              3789999999999999999754  3458999999999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh-hHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF-LLNE  672 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~-~~~~  672 (747)
                      |+++.+..........   .      ....+..|++||.+....++.++|||||||++||+++ |..|+...... ....
T Consensus       151 g~~~~~~~~~~~~~~~---~------~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~  221 (267)
T cd05066         151 GLSRVLEDDPEAAYTT---R------GGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKA  221 (267)
T ss_pred             Ccccccccccceeeec---C------CCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHH
Confidence            9997654322111000   0      0011235778888888889999999999999999886 98888654322 2222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      +...    .  .   +.....+    +..+.+++.+||+.+|.+||+|.++++.|+.+
T Consensus       222 ~~~~----~--~---~~~~~~~----~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         222 IEEG----Y--R---LPAPMDC----PAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             HhCC----C--c---CCCCCCC----CHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            2110    0  0   1111122    33478999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=3.2e-36  Score=328.74  Aligned_cols=260  Identities=18%  Similarity=0.228  Sum_probs=191.0

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .|..++.||+|+||.||+|+ ..+++.||||++....   ....+.+.+|++++++++|||||++++++...        
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~--------   73 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDK--------   73 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeC--------
Confidence            57889999999999999998 4568999999987432   23456788999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++|||||++|+|.+++...   ..+++.....++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~al~~lH~---~~ivHrDlKp~NILl~~~g~~kL~DFGl  147 (382)
T cd05625          74 DNLYFVMDYIPGGDMMSLLIRM---GIFPEDLARFYIAELTCAVESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGL  147 (382)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEeECCC
Confidence            4799999999999999998753   357888889999999999999999   7899999999999999999999999999


Q ss_pred             cccccccchhc--ccC---------------------------------CCCCcccccceeeecCCcceeeeeeccCCCc
Q 044236          597 SIIMEEHEKLE--AKG---------------------------------EGPKARYGFLFICRTSAENVVIVVDIQRTKL  641 (747)
Q Consensus       597 a~~~~~~~~~~--~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  641 (747)
                      ++.........  ..+                                 ............+++..|+|||++....++.
T Consensus       148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~  227 (382)
T cd05625         148 CTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQ  227 (382)
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCC
Confidence            85332100000  000                                 0000000011235778899999998889999


Q ss_pred             CCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-
Q 044236          642 EDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-  719 (747)
Q Consensus       642 k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-  719 (747)
                      ++|||||||++|||++|+.||....... ...+......   ..  .|. ....+++    +.+++.+++ .+|++|++ 
T Consensus       228 ~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~---~~--~p~-~~~~s~~----~~~li~~l~-~~p~~R~~~  296 (382)
T cd05625         228 LCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTS---LH--IPP-QAKLSPE----ASDLIIKLC-RGPEDRLGK  296 (382)
T ss_pred             eeeEEechHHHHHHHhCCCCCCCCCHHHHHHHHHccCCC---cC--CCC-cccCCHH----HHHHHHHHc-cCHhHcCCC
Confidence            9999999999999999999997544322 1112111100   00  010 1122333    556665554 59999987 


Q ss_pred             --HHHHHH
Q 044236          720 --FEDVLW  725 (747)
Q Consensus       720 --~~evl~  725 (747)
                        +.|++.
T Consensus       297 ~~~~ei~~  304 (382)
T cd05625         297 NGADEIKA  304 (382)
T ss_pred             CCHHHHhc
Confidence              888765

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=2.3e-36  Score=322.15  Aligned_cols=237  Identities=21%  Similarity=0.250  Sum_probs=182.8

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHH-HHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLD-FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~-~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||+||+|+. .+|+.||||++....   ......+..|.. +++.++||||+++++++...        +..+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~--------~~~~   72 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTA--------DKLY   72 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeC--------CEEE
Confidence            3689999999999995 579999999997432   223344555554 56789999999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++..   ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH~---~givH~dikp~NIll~~~~~~kl~Dfg~~~~~  146 (323)
T cd05575          73 FVLDYVNGGELFFHLQR---ERSFPEPRARFYAAEIASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (323)
T ss_pred             EEEcCCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeccCCCccc
Confidence            99999999999998875   3458899999999999999999999   89999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ......            ....+++..|++||.+....++.++|||||||++|||++|+.||...+...........  .
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~--~  212 (323)
T cd05575         147 IEHSKT------------TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNK--P  212 (323)
T ss_pred             ccCCCc------------cccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcC--C
Confidence            211110            01134567789999998888999999999999999999999998755433221111100  0


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE  721 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  721 (747)
                             ..+....    ...+.+++.+|++.||.+||++.
T Consensus       213 -------~~~~~~~----~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         213 -------LRLKPNI----SVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             -------CCCCCCC----CHHHHHHHHHHhhcCHHhCCCCC
Confidence                   0111122    33478899999999999999984

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=5.7e-36  Score=316.56  Aligned_cols=262  Identities=18%  Similarity=0.302  Sum_probs=199.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe--------CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeecc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL--------ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIES  508 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~  508 (747)
                      .++|.+.+.||+|+||.||+|+.        .++..||+|.++.. .....+.+.+|+.+++.+ +||||+++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            45678889999999999999973        12457999988643 234456789999999999 899999999998763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                              ...++||||+++|+|.+++....+             ...++|.+++.++.|+++||.|||+   .+|+|||
T Consensus        94 --------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~givH~d  162 (304)
T cd05101          94 --------GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS---QKCIHRD  162 (304)
T ss_pred             --------CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHH---CCeeecc
Confidence                    368999999999999999875321             2358899999999999999999999   7999999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      |||+||+++.++.+||+|||+++.+..........   .       ...+..|++||.+....++.++|||||||++|||
T Consensus       163 lkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~---~-------~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el  232 (304)
T cd05101         163 LAARNVLVTENNVMKIADFGLARDVNNIDYYKKTT---N-------GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI  232 (304)
T ss_pred             cccceEEEcCCCcEEECCCccceeccccccccccc---C-------CCCCceeeCchhhccCCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999997654322111000   0       0122357888988888899999999999999999


Q ss_pred             hh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          656 LV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       656 lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      ++ |..|+.......+......   ...     ..    .+......+.+++.+||+.+|.+|||+.|+++.|+.+...
T Consensus       233 ~~~g~~p~~~~~~~~~~~~~~~---~~~-----~~----~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         233 FTLGGSPYPGIPVEELFKLLKE---GHR-----MD----KPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             HcCCCCCcccCCHHHHHHHHHc---CCc-----CC----CCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence            98 6777765443322222111   100     00    1112234488899999999999999999999999877553

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.7e-36  Score=308.26  Aligned_cols=250  Identities=22%  Similarity=0.353  Sum_probs=198.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|... |+.||||.++.... ..+.+.+|+.++++++|+||+++++++...        ..
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~~   74 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQG--------NP   74 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCC--------CC
Confidence            356888899999999999999875 78899999975433 467889999999999999999999998763        36


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++++|.+++.... ...++|..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||.++
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~Nili~~~~~~~l~d~g~~~  150 (256)
T cd05039          75 LYIVTEYMAKGSLVDYLRSRG-RAVITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAK  150 (256)
T ss_pred             eEEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCccchhcccceEEEeCCCCEEEccccccc
Confidence            899999999999999987542 2368999999999999999999999   889999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      .......   .            ......|.+||.+....++.++|||||||++||+++ |..|+.......+.......
T Consensus       151 ~~~~~~~---~------------~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~  215 (256)
T cd05039         151 EASQGQD---S------------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKG  215 (256)
T ss_pred             ccccccc---c------------CCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcC
Confidence            6532111   0            011235677888777788999999999999999997 88888755433322221111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                         ..     +.....+    +..+.+++.+||..+|++|||+.|++.+|+.
T Consensus       216 ---~~-----~~~~~~~----~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         216 ---YR-----MEAPEGC----PPEVYKVMKDCWELDPAKRPTFKQLREQLAL  255 (256)
T ss_pred             ---CC-----CCCccCC----CHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence               00     1111122    3448899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=3e-36  Score=326.38  Aligned_cols=255  Identities=19%  Similarity=0.237  Sum_probs=193.8

Q ss_pred             HHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          436 KEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       436 ~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      ....++|++.+.||+|+||.||+++. .+++.||+|.+....   ....+.+.+|+.+++.++||||+++++++...   
T Consensus        39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~---  115 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDD---  115 (370)
T ss_pred             CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcC---
Confidence            34457899999999999999999995 468999999986422   23345678899999999999999999988763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                           ...++||||+++|+|.+++...    .+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||
T Consensus       116 -----~~~~lv~Ey~~gg~L~~~l~~~----~~~~~~~~~~~~qil~aL~~LH~---~~IvHrDLKp~NILl~~~~~~kL  183 (370)
T cd05621         116 -----KYLYMVMEYMPGGDLVNLMSNY----DVPEKWAKFYTAEVVLALDAIHS---MGLIHRDVKPDNMLLDKHGHLKL  183 (370)
T ss_pred             -----CEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEE
Confidence                 4799999999999999998642    47888899999999999999999   89999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc----CCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ----RTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~----~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      +|||+++.........           ....+++..|+|||++...    .++.++|||||||++|||++|+.||.....
T Consensus       184 ~DFG~a~~~~~~~~~~-----------~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~  252 (370)
T cd05621         184 ADFGTCMKMDETGMVR-----------CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSL  252 (370)
T ss_pred             EecccceecccCCcee-----------cccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCH
Confidence            9999997653221100           0113467789999988653    378899999999999999999999875442


Q ss_pred             h-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCC--CCCHHHHHHH
Q 044236          668 F-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS--RPSFEDVLWN  726 (747)
Q Consensus       668 ~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~  726 (747)
                      . ....+...   ......  |   .  .......+.+++..|+..+|.+  ||++.|++++
T Consensus       253 ~~~~~~i~~~---~~~~~~--p---~--~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         253 VGTYSKIMDH---KNSLNF--P---E--DVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             HHHHHHHHhC---CcccCC--C---C--cccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence            2 22222111   000011  0   0  0122334777888888765544  8999999875

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=6.2e-36  Score=315.01  Aligned_cols=263  Identities=20%  Similarity=0.304  Sum_probs=197.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCC-----------------CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLEN-----------------GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVS  500 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~-----------------g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~  500 (747)
                      .++|++.+.||+|+||.||+|+...                 +..||+|.+.... ....+.+.+|++++++++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            4578899999999999999987432                 2468999987433 334567889999999999999999


Q ss_pred             eeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCC--------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 044236          501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC--------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSF  572 (747)
Q Consensus       501 l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  572 (747)
                      ++++|...        ...++||||+++++|.+++....        ....+++..++.++.|++.||+|||+   .+|+
T Consensus        84 ~~~~~~~~--------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~---~~i~  152 (296)
T cd05051          84 LLGVCTVD--------PPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES---LNFV  152 (296)
T ss_pred             EEEEEecC--------CCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH---cCcc
Confidence            99998763        37899999999999999987532        12268999999999999999999998   7899


Q ss_pred             cCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHH
Q 044236          573 SNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL  652 (747)
Q Consensus       573 HrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl  652 (747)
                      ||||||+||+++.++.+||+|||+++...........+          ....+..|++||......++.++|||||||++
T Consensus       153 H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  222 (296)
T cd05051         153 HRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQG----------RAPLPIRWMAWESVLLGKFTTKSDVWAFGVTL  222 (296)
T ss_pred             ccccchhceeecCCCceEEccccceeecccCcceeecC----------cCCCCceecCHHHhhcCCCCccchhhhhHHHH
Confidence            99999999999999999999999987553322111100          01123457888888778899999999999999


Q ss_pred             HHHhh--CCCCCCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          653 LESLV--GPIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       653 ~Ellt--g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      |||++  |..|+..... ..+................+      .+...+.++.+++.+||+.||.+|||+.||++.|+
T Consensus       223 ~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         223 WEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLP------RPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHhcCCCCCCCCcChHHHHHHHHhccccccccccCC------CccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            99998  5677764332 22222222111111111111      11122245899999999999999999999998885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=7.9e-36  Score=305.98  Aligned_cols=247  Identities=22%  Similarity=0.380  Sum_probs=191.7

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEe
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYE  524 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~E  524 (747)
                      ++||+|+||.||+|...+++.+|+|.++... ......+.+|++++++++||||++++++|...        ...++|||
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~~~lv~e   72 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQR--------QPIYIVME   72 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecC--------CccEEEEE
Confidence            3689999999999998788999999987433 22335688999999999999999999998763        36899999


Q ss_pred             ccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccc
Q 044236          525 YIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE  604 (747)
Q Consensus       525 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~  604 (747)
                      |+++|+|.+++...  ...++|..+..++.|++.||.|+|+   .+++||||||+||+++.++.+||+|||+++......
T Consensus        73 ~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  147 (250)
T cd05085          73 LVPGGDFLSFLRKK--KDELKTKQLVKFALDAAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGI  147 (250)
T ss_pred             CCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccChheEEEcCCCeEEECCCccceeccccc
Confidence            99999999988653  3458899999999999999999998   889999999999999999999999999986533211


Q ss_pred             hhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      .... .   .       ......|++||.+....++.++|||||||++||+++ |..|+...............   .  
T Consensus       148 ~~~~-~---~-------~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~---~--  211 (250)
T cd05085         148 YSSS-G---L-------KQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKG---Y--  211 (250)
T ss_pred             cccC-C---C-------CCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcC---C--
Confidence            1000 0   0       011235788898888889999999999999999998 88888644322221111110   0  


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                         ...    .+......+.+++.+||+.+|++||++.|++++|.
T Consensus       212 ---~~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         212 ---RMS----CPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             ---CCC----CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence               001    11222345899999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-37  Score=324.51  Aligned_cols=245  Identities=22%  Similarity=0.305  Sum_probs=199.5

Q ss_pred             cccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEec
Q 044236          447 FMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEY  525 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey  525 (747)
                      ++|+|.||+||-|+ .++...+|||.+........+....||.+.+.|+|+|||+++|.|.+.+        .+-|.||-
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senG--------f~kIFMEq  653 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENG--------FFKIFMEQ  653 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCC--------eEEEEeec
Confidence            59999999999999 5667789999998777777788899999999999999999999987643        78899999


Q ss_pred             cCCCCcccccccCCCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec-CCCcEEEecccccccccc
Q 044236          526 IPNGSYRAHLSENCPENVL--KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD-EHRIAKLSDYGISIIMEE  602 (747)
Q Consensus       526 ~~~gsL~~~l~~~~~~~~l--~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~~~~~  602 (747)
                      ++||+|.++|+..  =+++  .+.+.-.+..||++||.|||+   ..|||||||-.|||++ -.|.+||+|||-++.+..
T Consensus       654 VPGGSLSsLLrsk--WGPlKDNEstm~fYtkQILeGLkYLHe---n~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAg  728 (1226)
T KOG4279|consen  654 VPGGSLSSLLRSK--WGPLKDNESTMNFYTKQILEGLKYLHE---NKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG  728 (1226)
T ss_pred             CCCCcHHHHHHhc--cCCCccchhHHHHHHHHHHHHhhhhhh---cceeeccccCCcEEEeeccceEEecccccchhhcc
Confidence            9999999999854  2345  677888899999999999999   7899999999999996 579999999999876543


Q ss_pred             cchhcccCCCCCcccccceeeecCCcceeeeeecc--CCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ--RTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      -.-.            .+.+.|+..|||||+++.+  .|..++|||||||.+.||+||++||..-...+... -+.+.  
T Consensus       729 inP~------------TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAM-FkVGm--  793 (1226)
T KOG4279|consen  729 INPC------------TETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAM-FKVGM--  793 (1226)
T ss_pred             CCcc------------ccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhh-hhhcc--
Confidence            2111            1235678899999999865  48899999999999999999999997544333221 11111  


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                         -.+.|    ..|.+...++..++.+|+.+||.+||++.+++.+
T Consensus       794 ---yKvHP----~iPeelsaeak~FilrcFepd~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  794 ---YKVHP----PIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQD  832 (1226)
T ss_pred             ---eecCC----CCcHHHHHHHHHHHHHHcCCCcccCccHHHhccC
Confidence               11223    3466777779999999999999999999999863

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=4.7e-36  Score=315.77  Aligned_cols=249  Identities=19%  Similarity=0.329  Sum_probs=197.1

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .+|+..+.||+|+||.||+|+ ..+++.||+|.+........+.+.+|+.+++.++||||+++++++...        ..
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~--------~~   91 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG--------DE   91 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeC--------CE
Confidence            468888999999999999998 456899999999865555567788999999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++..    ..+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        92 ~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~i~~ql~~aL~~LH~---~gi~H~dLkp~Nill~~~~~~kl~dfg~~~  164 (296)
T cd06654          92 LWVVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (296)
T ss_pred             EEEeecccCCCCHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEECccccch
Confidence            8999999999999998864    347899999999999999999999   889999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~~  677 (747)
                      .........            ....++..|++||.+....++.++|||||||++|||++|+.||....... ......  
T Consensus       165 ~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~--  230 (296)
T cd06654         165 QITPEQSKR------------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT--  230 (296)
T ss_pred             hcccccccc------------CcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhc--
Confidence            543221110            01134457888998888888999999999999999999999986543321 111110  


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                       . .....       ..+......+.+++.+||..+|++|||+.|++..
T Consensus       231 -~-~~~~~-------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         231 -N-GTPEL-------QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             -C-CCCCC-------CCccccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence             0 00000       0122233458889999999999999999999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=3.6e-36  Score=312.04  Aligned_cols=257  Identities=19%  Similarity=0.259  Sum_probs=195.2

Q ss_pred             HHHHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          435 LKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       435 l~~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++.+++++.....||+|+||.||+|+ ..++..||+|.+........+.+.+|+.++++++|+||+++++++...     
T Consensus         3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----   77 (268)
T cd06624           3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSEN-----   77 (268)
T ss_pred             cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccC-----
Confidence            34456777777899999999999998 456889999998766555667899999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCcEE
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVL--KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRIAK  590 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l--~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~k  590 (747)
                         +..++||||+++++|.++++..  ...+  ++..+..++.|++.||+|||+   .+|+||||||+||+++. ++.+|
T Consensus        78 ---~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~h~dl~p~nil~~~~~~~~~  149 (268)
T cd06624          78 ---GFFKIFMEQVPGGSLSALLRSK--WGPLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIKGDNVLVNTYSGVVK  149 (268)
T ss_pred             ---CEEEEEEecCCCCCHHHHHHHh--cccCCCcHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCeEE
Confidence               4789999999999999998753  2234  788889999999999999998   89999999999999986 67999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc--CCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ--RTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      |+|||++...........            ...++..|++||.+...  .++.++|||||||++|||++|+.|+......
T Consensus       150 l~dfg~~~~~~~~~~~~~------------~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~  217 (268)
T cd06624         150 ISDFGTSKRLAGINPCTE------------TFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEP  217 (268)
T ss_pred             EecchhheecccCCCccc------------cCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccCh
Confidence            999999865432111000            01234567788877543  3788999999999999999999998643221


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....... ...     ...+.+    +......+.+++.+||+.+|.+|||+.|++.+
T Consensus       218 ~~~~~~~-~~~-----~~~~~~----~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         218 QAAMFKV-GMF-----KIHPEI----PESLSAEAKNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             hhhHhhh-hhh-----ccCCCC----CcccCHHHHHHHHHHcCCCchhCCCHHHHHhC
Confidence            1111110 000     001111    22233458899999999999999999999863

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.5e-36  Score=312.18  Aligned_cols=257  Identities=18%  Similarity=0.248  Sum_probs=197.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|.+.+.||+|+||.||+|...      .+..||+|.+.... ......+.+|+.+++.++||||+++++++...   
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~---   81 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTG---   81 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCC---
Confidence            357888999999999999999853      24689999986432 23446788999999999999999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCC-------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCP-------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD  584 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  584 (747)
                           ...++||||+++|+|.+++.....       ...++|..++.++.|++.||.|||+   .+|+||||||+||+++
T Consensus        82 -----~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~di~p~nill~  153 (277)
T cd05032          82 -----QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAA---KKFVHRDLAARNCMVA  153 (277)
T ss_pred             -----CCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccChheEEEc
Confidence                 468999999999999999864321       2347899999999999999999998   8999999999999999


Q ss_pred             CCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCC
Q 044236          585 EHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTG  663 (747)
Q Consensus       585 ~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~  663 (747)
                      .++.+||+|||+++.+..........   .       ..++..|.+||.+....++.++|||||||++||++| |..|+.
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~~~~~~---~-------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  223 (277)
T cd05032         154 EDLTVKIGDFGMTRDIYETDYYRKGG---K-------GLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQ  223 (277)
T ss_pred             CCCCEEECCcccchhhccCcccccCC---C-------CCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCc
Confidence            99999999999987654322111100   0       112345788888877889999999999999999998 888886


Q ss_pred             CChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ............   ....     +.....+    ...+.+++.+||+.+|++|||+.+++..|+
T Consensus       224 ~~~~~~~~~~~~---~~~~-----~~~~~~~----~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         224 GLSNEEVLKFVI---DGGH-----LDLPENC----PDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             cCCHHHHHHHHh---cCCC-----CCCCCCC----CHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence            544333222222   1111     1111222    345889999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=5.7e-36  Score=316.27  Aligned_cols=258  Identities=21%  Similarity=0.326  Sum_probs=197.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCc----EEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGT----YVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|+..+.||+|+||.||+|.. .+|+    .||+|.+.... ......+.+|+.++++++||||++++|+|...     
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-----   81 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-----   81 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-----
Confidence            5678889999999999999984 4454    47888876432 23334688999999999999999999998652     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                          ..++++||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        82 ----~~~~v~e~~~~g~l~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dikp~Nill~~~~~~kL~D  152 (303)
T cd05110          82 ----TIQLVTQLMPHGCLLDYVHEH--KDNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITD  152 (303)
T ss_pred             ----CceeeehhcCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHhh---cCeeccccccceeeecCCCceEEcc
Confidence                357999999999999998754  3358899999999999999999999   8899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++............          ....+..|++||.+....++.++|||||||++||+++ |..|+..........
T Consensus       153 fg~~~~~~~~~~~~~~~----------~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~  222 (303)
T cd05110         153 FGLARLLEGDEKEYNAD----------GGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPD  222 (303)
T ss_pred             ccccccccCcccccccC----------CCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence            99997654322110000          0112346788888888889999999999999999998 888886544333333


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      +......     ...   ...+    ...+.+++.+||..+|++||++.++++.|+.+.+.
T Consensus       223 ~~~~~~~-----~~~---~~~~----~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         223 LLEKGER-----LPQ---PPIC----TIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             HHHCCCC-----CCC---CCCC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            3221111     001   1112    23478899999999999999999999999887554

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=7e-36  Score=310.17  Aligned_cols=249  Identities=24%  Similarity=0.370  Sum_probs=189.1

Q ss_pred             ccccCCCCeeEEEEEeC-CCc--EEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRLE-NGT--YVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|+.. ++.  .+|+|.++.. .....+.+.+|++++.++ +||||++++++|...        ...+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~--------~~~~   72 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR--------GYLY   72 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecC--------CCce
Confidence            36899999999999964 444  4688888743 234456788999999999 799999999998763        3679


Q ss_pred             EEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          521 LVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                      +||||+++|+|.+++....             ....+++..+..++.|++.||+|||+   .+++||||||+||+++.++
T Consensus        73 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nili~~~~  149 (270)
T cd05047          73 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENY  149 (270)
T ss_pred             EEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccccceEEEcCCC
Confidence            9999999999999986532             12348899999999999999999998   8999999999999999999


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCCh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGE  666 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~  666 (747)
                      .+||+|||+++.......   .      ..    ...+..|++||.+....++.++|||||||++|||++ |..||....
T Consensus       150 ~~kl~dfgl~~~~~~~~~---~------~~----~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~  216 (270)
T cd05047         150 VAKIADFGLSRGQEVYVK---K------TM----GRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT  216 (270)
T ss_pred             eEEECCCCCccccchhhh---c------cC----CCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC
Confidence            999999999853221100   0      00    011235788888888889999999999999999997 888886443


Q ss_pred             hhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          667 AFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       667 ~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ... ...+..    ...     ...    +......+.+++.+||+.+|.+|||+.+++..|+.+.
T Consensus       217 ~~~~~~~~~~----~~~-----~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         217 CAELYEKLPQ----GYR-----LEK----PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             HHHHHHHHhC----CCC-----CCC----CCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence            222 111111    000     001    1112234889999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=5.8e-36  Score=316.96  Aligned_cols=262  Identities=17%  Similarity=0.227  Sum_probs=197.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||.||+++. .++..+|+|.+... +......+.+|++++++++||||++++++|...        +
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~   72 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSD--------G   72 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC--------C
Confidence            3688999999999999999984 56889999988743 233345688999999999999999999999763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.++++..   ..+++..+..++.|+++||.|||+.  .+++||||||+|||++.++.+||+|||++
T Consensus        73 ~~~lv~ey~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~  147 (308)
T cd06615          73 EISICMEHMDGGSLDQVLKKA---GRIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS  147 (308)
T ss_pred             EEEEEeeccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCCcEEEccCCCc
Confidence            899999999999999999753   4588999999999999999999973  47999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      +........              ...++..|.+||.+.+..++.++|||||||++|||++|+.|+...+...........
T Consensus       148 ~~~~~~~~~--------------~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~  213 (308)
T cd06615         148 GQLIDSMAN--------------SFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRP  213 (308)
T ss_pred             ccccccccc--------------cCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCc
Confidence            654321110              123455678888887778899999999999999999999988644332222211111


Q ss_pred             CcCCcc---------------------ccccc---cccCCCC-HHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          678 SQDGRR---------------------RIVDP---VVLTTCS-QESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       678 ~~~~~~---------------------~~~d~---~~~~~~~-~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ......                     +..+.   ......+ ......+.+++.+||..+|++|||+.||++..-
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~  289 (308)
T cd06615         214 VSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPF  289 (308)
T ss_pred             cccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcChh
Confidence            000000                     00000   0000000 112345889999999999999999999998754

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=7.8e-36  Score=312.94  Aligned_cols=261  Identities=16%  Similarity=0.206  Sum_probs=196.7

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      ..++|++.+.||+|+||.||+|...      .+..||+|.+.... ......+.+|+.++++++||||+++++++...  
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--   81 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG--   81 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC--
Confidence            3567899999999999999999743      24589999886433 22335678899999999999999999988763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCC-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENC-------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL  583 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  583 (747)
                            ...++||||+++|+|.++++...       ....+++.....++.|++.||.|||+   .+|+||||||+||++
T Consensus        82 ------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dikp~nili  152 (288)
T cd05061          82 ------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMV  152 (288)
T ss_pred             ------CCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCCChheEEE
Confidence                  36899999999999999996421       12345778889999999999999999   899999999999999


Q ss_pred             cCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCC
Q 044236          584 DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVT  662 (747)
Q Consensus       584 d~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~  662 (747)
                      +.++.+||+|||+++............   .       ..+...|++||.+....++.++|||||||++|||++ |..|+
T Consensus       153 ~~~~~~~L~Dfg~~~~~~~~~~~~~~~---~-------~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~  222 (288)
T cd05061         153 AHDFTVKIGDFGMTRDIYETDYYRKGG---K-------GLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPY  222 (288)
T ss_pred             cCCCcEEECcCCccccccccccccccC---C-------CcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999987543222111000   0       011234778888878889999999999999999999 68788


Q ss_pred             CCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ..............   ...     +.....+    ...+.+++.+||+.||++|||+.++++.|+...
T Consensus       223 ~~~~~~~~~~~~~~---~~~-----~~~~~~~----~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         223 QGLSNEQVLKFVMD---GGY-----LDQPDNC----PERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             CCCCHHHHHHHHHc---CCC-----CCCCCCC----CHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence            65443322221110   100     0111122    345899999999999999999999999888653

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=7e-36  Score=312.29  Aligned_cols=249  Identities=20%  Similarity=0.266  Sum_probs=192.6

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      |++.+.||+|+||.||+|+. .++..+|+|.+........+.+.+|+++++.++||||++++++|...        ...+
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~--------~~~~   78 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYE--------NNLW   78 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeC--------CEEE
Confidence            56678899999999999995 45888999998765555667889999999999999999999998763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++...  ...+++..+..++.|+++||.|||+   .+|+||||||+||+++.++.+||+|||+++..
T Consensus        79 ~v~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~qi~~~L~~LH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~  153 (282)
T cd06643          79 ILIEFCAGGAVDAVMLEL--ERPLTEPQIRVVCKQTLEALNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKN  153 (282)
T ss_pred             EEEEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEccCCCEEEccccccccc
Confidence            999999999998887643  3468999999999999999999999   89999999999999999999999999998654


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHH
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMA  674 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~  674 (747)
                      .......            ....++..|++||.+.     ...++.++|||||||++|||++|+.|+....... .....
T Consensus       154 ~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~  221 (282)
T cd06643         154 TRTIQRR------------DSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIA  221 (282)
T ss_pred             ccccccc------------ccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHh
Confidence            3211100            0123455678888763     3457789999999999999999999986543221 11111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..   ... ....       +......+.+++.+||+.+|.+||++.++++.
T Consensus       222 ~~---~~~-~~~~-------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  262 (282)
T cd06643         222 KS---EPP-TLAQ-------PSRWSSEFKDFLKKCLEKNVDARWTTTQLLQH  262 (282)
T ss_pred             hc---CCC-CCCC-------ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            10   000 0011       11223458899999999999999999999864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=3.1e-36  Score=321.98  Aligned_cols=257  Identities=21%  Similarity=0.273  Sum_probs=199.7

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-C-----CCcceeeeeeeccCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-H-----PHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H-----~nIv~l~g~~~~~~~~~~  513 (747)
                      +|.+.+.||+|.||+|-||. .++++.||||+++..+. -..+-..|+.+|..|+ |     -|+|++++||...     
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~-f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr-----  260 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR-FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFR-----  260 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH-HHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccc-----
Confidence            68899999999999999998 67799999999986544 3455677999999997 4     3899999999874     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC--CCcEEE
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE--HRIAKL  591 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--~~~~kl  591 (747)
                         ++.|||+|.++. +|+++|+.+. ...++......++.||+.||.+||+   .+|||+||||+||||.+  ...+||
T Consensus       261 ---~HlciVfELL~~-NLYellK~n~-f~Glsl~~ir~~~~Qil~~L~~L~~---l~IIHcDLKPENILL~~~~r~~vKV  332 (586)
T KOG0667|consen  261 ---NHLCIVFELLST-NLYELLKNNK-FRGLSLPLVRKFAQQILTALLFLHE---LGIIHCDLKPENILLKDPKRSRIKV  332 (586)
T ss_pred             ---cceeeeehhhhh-hHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCChhheeeccCCcCceeE
Confidence               589999999966 9999998763 4459999999999999999999998   89999999999999964  347999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCC-CCCCChhhhH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI-VTGKGEAFLL  670 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~-p~~~~~~~~~  670 (747)
                      +|||.|+......            |   .+.....|.|||++.+.+|+.+.||||||||+.||+||.+ +.++.+.+++
T Consensus       333 IDFGSSc~~~q~v------------y---tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl  397 (586)
T KOG0667|consen  333 IDFGSSCFESQRV------------Y---TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQL  397 (586)
T ss_pred             EecccccccCCcc------------e---eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHH
Confidence            9999997643211            1   2356778999999999999999999999999999999944 4455666666


Q ss_pred             HHHHhccCcC-------------------Cccc-----------------------ccccccc-------CCCCHHHHHH
Q 044236          671 NEMASFGSQD-------------------GRRR-----------------------IVDPVVL-------TTCSQESLSI  701 (747)
Q Consensus       671 ~~~~~~~~~~-------------------~~~~-----------------------~~d~~~~-------~~~~~~~~~~  701 (747)
                      ..+.......                   +...                       ..+...+       ..........
T Consensus       398 ~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~  477 (586)
T KOG0667|consen  398 ARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKL  477 (586)
T ss_pred             HHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHH
Confidence            5544321110                   0000                       0000000       0011133456


Q ss_pred             HHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          702 VVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       702 ~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +.+++++|+.+||.+|+|..|++++
T Consensus       478 F~dflk~~L~~dP~~R~tp~qal~H  502 (586)
T KOG0667|consen  478 FIDFLKRCLEWDPAERITPAQALNH  502 (586)
T ss_pred             HHHHHHHHhccCchhcCCHHHHhcC
Confidence            8999999999999999999999864

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-35  Score=306.06  Aligned_cols=249  Identities=22%  Similarity=0.298  Sum_probs=192.7

Q ss_pred             ccccCCCCeeEEEEEeC--C--CcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRLE--N--GTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~--~--g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|++.  +  +..+|+|.+..... ...+.+.+|++++++++|||||++++++..         +..+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---------~~~~   71 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG---------EPLM   71 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC---------CceE
Confidence            46999999999999742  2  36899999875433 345678899999999999999999998753         2579


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|.+++...   ..+++..+..++.|++.||+|||.   .+++||||||+||+++.++.+||+|||+++..
T Consensus        72 ~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~nili~~~~~~kl~df~~~~~~  145 (257)
T cd05060          72 LVMELAPLGPLLKYLKKR---REIPVSDLKELAHQVAMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRAL  145 (257)
T ss_pred             EEEEeCCCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHhh---cCeeccCcccceEEEcCCCcEEecccccccee
Confidence            999999999999999763   368999999999999999999998   78999999999999999999999999999765


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      ...........         ...++..|++||......++.++|||||||++||+++ |..||.......+........ 
T Consensus       146 ~~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~-  215 (257)
T cd05060         146 GAGSDYYRATT---------AGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGE-  215 (257)
T ss_pred             ecCCccccccc---------CccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCC-
Confidence            43222111000         0011235778888888889999999999999999998 899987544333222222111 


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                          ..   .    .+...+..+.+++.+||..+|++||++.++++.|+..
T Consensus       216 ----~~---~----~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~  255 (257)
T cd05060         216 ----RL---P----RPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD  255 (257)
T ss_pred             ----cC---C----CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence                00   1    1122234588999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-35  Score=310.08  Aligned_cols=259  Identities=20%  Similarity=0.335  Sum_probs=200.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCc----EEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGT----YVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|++.+.||+|+||.||+|... +|+    .||+|.+.... ......+.+|+.++++++||||++++++|..      
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   80 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS------   80 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec------
Confidence            56788899999999999999853 343    68999886543 3345678899999999999999999999875      


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        81 ---~~~~~v~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~di~p~nil~~~~~~~kL~d  152 (279)
T cd05057          81 ---SQVQLITQLMPLGCLLDYVRNH--KDNIGSQYLLNWCVQIAKGMSYLEE---KRLVHRDLAARNVLVKTPQHVKITD  152 (279)
T ss_pred             ---CceEEEEecCCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecccCcceEEEcCCCeEEECC
Confidence               2679999999999999998764  3358999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++............          .......|++||......++.++|||||||++||+++ |+.|+.......+..
T Consensus       153 fg~~~~~~~~~~~~~~~----------~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~  222 (279)
T cd05057         153 FGLAKLLDVDEKEYHAE----------GGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPD  222 (279)
T ss_pred             CcccccccCcccceecC----------CCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence            99997654322111100          0011235778888777888999999999999999999 999987654333322


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ......     ....+   ..++    ..+.+++.+||..+|.+||++.++++.|..+.+..
T Consensus       223 ~~~~~~-----~~~~~---~~~~----~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05057         223 LLEKGE-----RLPQP---PICT----IDVYMVLVKCWMIDAESRPTFKELINEFSKMARDP  272 (279)
T ss_pred             HHhCCC-----CCCCC---CCCC----HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhCC
Confidence            222111     00111   1122    34788999999999999999999999999886644

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=4.1e-36  Score=313.09  Aligned_cols=246  Identities=16%  Similarity=0.201  Sum_probs=186.3

Q ss_pred             ccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          448 MGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       448 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ||+|+||.||+++. .+|+.+|+|++....   ......+..|++++++++||||+++++++...        ...++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~--------~~~~lv~   72 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESK--------THLCLVM   72 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecC--------CeEEEEE
Confidence            69999999999985 569999999986422   12234556799999999999999999988653        4789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++|+|.+++.... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++......
T Consensus        73 e~~~g~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~  148 (277)
T cd05607          73 SLMNGGDLKYHIYNVG-ERGLEMERVIHYSAQITCGILHLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG  148 (277)
T ss_pred             ecCCCCCHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHH---CCEEEccCChHhEEEcCCCCEEEeeceeeeecCCC
Confidence            9999999998876432 3458899999999999999999999   89999999999999999999999999998654322


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHHhccCcCCc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMASFGSQDGR  682 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~~~~~~~~~  682 (747)
                      ...             ....++..|++||.+....++.++|||||||++|||++|+.|+........ ..+........ 
T Consensus       149 ~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-  214 (277)
T cd05607         149 KTI-------------TQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDE-  214 (277)
T ss_pred             cee-------------eccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccc-
Confidence            110             012345678899998888899999999999999999999999864322111 11111110000 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       683 ~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                         +.. ....    ...++.+++.+||+.||.+||++.|+++.+
T Consensus       215 ---~~~-~~~~----~~~~~~~li~~~L~~~P~~R~~~~~~~~~~  251 (277)
T cd05607         215 ---VKF-EHQN----FTEESKDICRLFLAKKPEDRLGSREKNDDP  251 (277)
T ss_pred             ---ccc-cccc----CCHHHHHHHHHHhccCHhhCCCCccchhhh
Confidence               000 0011    233488999999999999999997766433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=2.7e-36  Score=328.75  Aligned_cols=262  Identities=17%  Similarity=0.197  Sum_probs=193.7

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .+|++++.||+|+||.||+|+ ..+++.||||++....   ......+.+|+++|++++||||+++++++...       
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~-------   73 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDK-------   73 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcC-------
Confidence            368899999999999999998 4568999999986432   23346688999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +.+++||||+++|+|.+++...   ..++......++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~E~~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~ikL~DFG  146 (376)
T cd05598          74 -DNLYFVMDYIPGGDMMSLLIRL---GIFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFG  146 (376)
T ss_pred             -CEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHEEECCCCCEEEEeCC
Confidence             4899999999999999999753   457888888999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchh---------cccC--------CC--------------CCcccccceeeecCCcceeeeeeccCCCcCCc
Q 044236          596 ISIIMEEHEKL---------EAKG--------EG--------------PKARYGFLFICRTSAENVVIVVDIQRTKLEDD  644 (747)
Q Consensus       596 la~~~~~~~~~---------~~~~--------~~--------------~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~D  644 (747)
                      +|.........         ....        ..              ...........++..|+|||++....++.++|
T Consensus       147 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  226 (376)
T cd05598         147 LCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCD  226 (376)
T ss_pred             CCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCccee
Confidence            98532110000         0000        00              00000001235788899999999889999999


Q ss_pred             eeehhHHHHHHhhCCCCCCCChhhhH-HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC---CH
Q 044236          645 VYNFGFILLESLVGPIVTGKGEAFLL-NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP---SF  720 (747)
Q Consensus       645 VwSfGvvl~Elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP---s~  720 (747)
                      ||||||++|||++|+.||........ ..+....   ....  .+. ....+.+    +.+++.+|+ .+|.+|+   ++
T Consensus       227 iwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~---~~~~--~~~-~~~~s~~----~~~li~~l~-~~p~~R~~~~t~  295 (376)
T cd05598         227 WWSVGVILYEMLVGQPPFLADTPAETQLKVINWE---TTLH--IPS-QAKLSRE----ASDLILRLC-CGAEDRLGKNGA  295 (376)
T ss_pred             eeeccceeeehhhCCCCCCCCCHHHHHHHHhccC---cccc--CCC-CCCCCHH----HHHHHHHHh-cCHhhcCCCCCH
Confidence            99999999999999999976543222 1111110   0000  010 1122333    566667765 4999999   89


Q ss_pred             HHHHHH
Q 044236          721 EDVLWN  726 (747)
Q Consensus       721 ~evl~~  726 (747)
                      .|++..
T Consensus       296 ~ell~h  301 (376)
T cd05598         296 DEIKAH  301 (376)
T ss_pred             HHHhCC
Confidence            999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.3e-35  Score=315.12  Aligned_cols=261  Identities=18%  Similarity=0.306  Sum_probs=199.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeC--------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE--------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESG  509 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~  509 (747)
                      ++|.+.+.||+|+||.||+|+..        ....||+|.++... ......+..|+++++++ +||||++++++|... 
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-   90 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE-   90 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC-
Confidence            56788899999999999999731        24579999887432 33456788999999999 699999999998763 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                             ...++||||+++|+|.+++....             ....++|.+++.++.|++.||.|||+   .+|+||||
T Consensus        91 -------~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H~dl  160 (314)
T cd05099          91 -------GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES---RRCIHRDL  160 (314)
T ss_pred             -------CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeeccc
Confidence                   36899999999999999986532             12358999999999999999999998   89999999


Q ss_pred             CCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHh
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ell  656 (747)
                      ||+||+++.++.+||+|||+++............      .    ......|++||.+....++.++|||||||++|||+
T Consensus       161 kp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~------~----~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~  230 (314)
T cd05099         161 AARNVLVTEDNVMKIADFGLARGVHDIDYYKKTS------N----GRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIF  230 (314)
T ss_pred             cceeEEEcCCCcEEEccccccccccccccccccc------c----CCCCccccCHHHHccCCcCccchhhHHHHHHHHHH
Confidence            9999999999999999999997654322111000      0    01123578899888888999999999999999999


Q ss_pred             h-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          657 V-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       657 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      + |..|+...............   ..     ...    +......+.+++.+||+.+|++|||+.|+++.|+.+...
T Consensus       231 ~~g~~p~~~~~~~~~~~~~~~~---~~-----~~~----~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~  296 (314)
T cd05099         231 TLGGSPYPGIPVEELFKLLREG---HR-----MDK----PSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAA  296 (314)
T ss_pred             hCCCCCCCCCCHHHHHHHHHcC---CC-----CCC----CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHH
Confidence            9 78888654433222222111   00     011    112233478999999999999999999999999877553

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-35  Score=307.11  Aligned_cols=253  Identities=21%  Similarity=0.296  Sum_probs=196.5

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|+..+.||+|+||.||+|.. .+++.||+|.+....     ....+.+.+|++++++++||||+++++++...     
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----   76 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDD-----   76 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccC-----
Confidence            4688899999999999999984 568999999986432     12345788999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++++|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        77 ---~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nilv~~~~~~~l~d  147 (263)
T cd06625          77 ---ETLSIFMEYMPGGSVKDQLKAY---GALTETVTRKYTRQILEGVEYLHS---NMIVHRDIKGANILRDSAGNVKLGD  147 (263)
T ss_pred             ---CeEEEEEEECCCCcHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEee
Confidence               3899999999999999988753   358889999999999999999999   8899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++..........         ++....+...|.+||.+....++.++|||||||++|||++|+.|+...+....  .
T Consensus       148 fg~~~~~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~--~  216 (263)
T cd06625         148 FGASKRLQTICSSGT---------GMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAA--I  216 (263)
T ss_pred             cccceeccccccccc---------cccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHH--H
Confidence            999865432111000         00112344578899999888899999999999999999999999865432211  1


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........     .+.+    +......+.+++.+||..+|.+|||+.|+++.
T Consensus       217 ~~~~~~~~-----~~~~----~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         217 FKIATQPT-----NPQL----PSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             HHHhccCC-----CCCC----CccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            11111111     1111    22233448899999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=5.1e-36  Score=316.33  Aligned_cols=257  Identities=23%  Similarity=0.315  Sum_probs=197.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~  511 (747)
                      ++|...+.||+|+||.||+|..      ..+..||||.++... ....+.+.+|+++++++ +||||++++++|...   
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~---  111 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIG---  111 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecC---
Confidence            5688899999999999999973      135689999887442 33346788999999999 799999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                           +..++||||+++|+|.++++... ...+++.++..++.|++.||+|||+   .+|+||||||+|||++.++.+|+
T Consensus       112 -----~~~~lv~e~~~~~~L~~~i~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l  182 (302)
T cd05055         112 -----GPILVITEYCCYGDLLNFLRRKR-ESFLTLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNVLLTHGKIVKI  182 (302)
T ss_pred             -----CceEEEEEcCCCCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeehhhhccceEEEcCCCeEEE
Confidence                 36899999999999999987532 2348999999999999999999999   78999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh-h
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF-L  669 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~-~  669 (747)
                      +|||+++...........+          ....+..|++||.+....++.++|||||||++|||+| |..|+...... .
T Consensus       183 ~dfg~~~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~  252 (302)
T cd05055         183 CDFGLARDIMNDSNYVVKG----------NARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSK  252 (302)
T ss_pred             CCCcccccccCCCceeecC----------CCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHH
Confidence            9999987543221110000          0112346888998888889999999999999999998 88887643322 1


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ........    . .   +.    .+......+.+++.+||+.+|++|||+.|+++.|+.+
T Consensus       253 ~~~~~~~~----~-~---~~----~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         253 FYKLIKEG----Y-R---MA----QPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             HHHHHHcC----C-c---CC----CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            11111100    0 0   00    0111233588999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=3.4e-36  Score=321.20  Aligned_cols=238  Identities=20%  Similarity=0.233  Sum_probs=183.0

Q ss_pred             ccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHH-HHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLD-FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~-~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||+||+|+ ..+|+.||||++....   ......+..|.. +++.++||||+++++++...        +..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~--------~~~~   72 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTT--------EKLY   72 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecC--------CEEE
Confidence            368999999999998 4579999999987432   223345555655 46789999999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++..   ...+++..+..++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~al~~lH~---~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~  146 (325)
T cd05604          73 FVLDFVNGGELFFHLQR---ERSFPEPRARFYAAEIASALGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (325)
T ss_pred             EEEcCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEeecCCcccC
Confidence            99999999999988865   3458999999999999999999999   89999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ......            .....++..|++||.+....++.++|||||||++|||++|+.||...+...+......  ..
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~--~~  212 (325)
T cd05604         147 IAQSDT------------TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILH--KP  212 (325)
T ss_pred             CCCCCC------------cccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHc--CC
Confidence            211110            0113456788999999888899999999999999999999999875543322111110  00


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED  722 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~e  722 (747)
                             .......    ...+.+++.+|++.+|.+||++.+
T Consensus       213 -------~~~~~~~----~~~~~~ll~~ll~~~p~~R~~~~~  243 (325)
T cd05604         213 -------LVLRPGA----SLTAWSILEELLEKDRQRRLGAKE  243 (325)
T ss_pred             -------ccCCCCC----CHHHHHHHHHHhccCHHhcCCCCC
Confidence                   0111122    234778999999999999998863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=9.6e-36  Score=306.35  Aligned_cols=250  Identities=17%  Similarity=0.235  Sum_probs=196.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +|++.+.||+|+||.||+++. .+++.+|+|.++.. .....+.+.+|+.++++++|+||+++++++...        +.
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~   72 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEAD--------GH   72 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEEC--------CE
Confidence            477889999999999999984 56899999998643 233456788899999999999999999998763        48


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++.... ...+++.....++.|++.||.|||+   .+|+|+||||+||+++.++.++++|||+++
T Consensus        73 ~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~  148 (255)
T cd08219          73 LYIVMEYCDGGDLMQKIKLQR-GKLFPEDTILQWFVQMCLGVQHIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSAR  148 (255)
T ss_pred             EEEEEeeCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEECCCCcEEEcccCcce
Confidence            999999999999999886432 3457889999999999999999999   899999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .........            ....+...|++||.+....++.++||||||+++|||++|..||................
T Consensus       149 ~~~~~~~~~------------~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~  216 (255)
T cd08219         149 LLTSPGAYA------------CTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGS  216 (255)
T ss_pred             eeccccccc------------ccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCC
Confidence            553221110            01234556888998888889999999999999999999999987654332222111110


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                         ..     .+    +......+.+++.+||+.||++|||+.|++.+
T Consensus       217 ---~~-----~~----~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         217 ---YK-----PL----PSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             ---CC-----CC----CcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence               00     01    11223348899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.4e-35  Score=307.87  Aligned_cols=256  Identities=23%  Similarity=0.320  Sum_probs=197.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC----CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN----GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|.+.+.||+|+||.||+|...+    ...||||...... ....+.+.+|+.++++++||||++++++|..       
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------   78 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-------   78 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-------
Confidence            457788899999999999998533    3468999887543 3445688999999999999999999998864       


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+||
T Consensus        79 --~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~  151 (270)
T cd05056          79 --NPVWIVMELAPLGELRSYLQVN--KYSLDLASLILYSYQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDF  151 (270)
T ss_pred             --CCcEEEEEcCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccChheEEEecCCCeEEccC
Confidence              2468999999999999999753  3358999999999999999999998   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |+++...........           .......|++||.+....++.++|||||||++||+++ |..||...........
T Consensus       152 g~~~~~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~  220 (270)
T cd05056         152 GLSRYLEDESYYKAS-----------KGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGR  220 (270)
T ss_pred             ceeeecccccceecC-----------CCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence            998765432211100           0011235778888877889999999999999999996 9988865433221111


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ....  .   .   ......+    +..+.+++.+||..+|++|||+.+++..|+....
T Consensus       221 ~~~~--~---~---~~~~~~~----~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         221 IENG--E---R---LPMPPNC----PPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             HHcC--C---c---CCCCCCC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            1110  0   0   0111222    3358889999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=7.5e-36  Score=323.14  Aligned_cols=266  Identities=17%  Similarity=0.191  Sum_probs=194.4

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|++.+.||+|+||.||+|+. .+|+.||||++...  .......+.+|+.+++.++||||+++++++......  .
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~--~   96 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSL--E   96 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCc--c
Confidence            357899999999999999999984 56899999998642  233456778999999999999999999988653211  1


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++||||+++ +|.+.++.     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        97 ~~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~~L~~LH~---~~ivHrDlkp~NIl~~~~~~~kl~Df  167 (359)
T cd07876          97 EFQDVYLVMELMDA-NLCQVIHM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF  167 (359)
T ss_pred             ccceeEEEEeCCCc-CHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEecC
Confidence            12357999999975 56665542     37888899999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~  673 (747)
                      |+++........             ....++..|++||.+....++.++|||||||++|||+||+.||...+.. ....+
T Consensus       168 g~a~~~~~~~~~-------------~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~  234 (359)
T cd07876         168 GLARTACTNFMM-------------TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKV  234 (359)
T ss_pred             CCccccccCccC-------------CCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            998653221110             0123456789999998889999999999999999999999998754321 11111


Q ss_pred             HhccCcC--------------------Cc-----ccccccc-c--cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQD--------------------GR-----RRIVDPV-V--LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~--------------------~~-----~~~~d~~-~--~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .......                    ..     .+....- .  ...........+.+++.+||+.||++|||+.|++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  314 (359)
T cd07876         235 IEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALR  314 (359)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhc
Confidence            1100000                    00     0000000 0  00001112345789999999999999999999997


Q ss_pred             HH
Q 044236          726 NL  727 (747)
Q Consensus       726 ~L  727 (747)
                      +-
T Consensus       315 hp  316 (359)
T cd07876         315 HP  316 (359)
T ss_pred             Cc
Confidence            64

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=4e-36  Score=326.78  Aligned_cols=265  Identities=17%  Similarity=0.223  Sum_probs=193.6

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+++++.++||||+++++++...+.   ....
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~---~~~~   77 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHI---DPFE   77 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCc---cccc
Confidence            578889999999999999984 57999999998642  23345678899999999999999999999875321   1123


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+. ++|.+++..   ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~-~~l~~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~a  150 (372)
T cd07853          78 EIYVVTELMQ-SDLHKIIVS---PQPLSSDHVKVFLYQILRGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLA  150 (372)
T ss_pred             eEEEEeeccc-cCHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHHEEECCCCCEEeccccce
Confidence            6899999997 578877754   3468999999999999999999999   88999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      +..........           ....++..|++||.+.+. .++.++|||||||++|||++|+.||..... ..+..+..
T Consensus       151 ~~~~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~  219 (372)
T cd07853         151 RVEEPDESKHM-----------TQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITD  219 (372)
T ss_pred             eecccCccccC-----------CCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence            75432211100           001234568889887653 478999999999999999999999875432 22222221


Q ss_pred             ccCcCCccc---------------ccccc-c--cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQDGRRR---------------IVDPV-V--LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~~~~~---------------~~d~~-~--~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........               ...+. .  ...........+.+++.+|++.||.+|||+.|++.+
T Consensus       220 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         220 LLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence            111100000               00000 0  001112224458899999999999999999999864

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-38  Score=302.89  Aligned_cols=247  Identities=19%  Similarity=0.281  Sum_probs=201.1

Q ss_pred             CCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      |+++.++|+|+||.||||. .+.|+.||||++...  .+.+++..|+.+|++.+.|++|++||.|..        ...++
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK--------~sDLW  104 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFK--------HSDLW  104 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhcc--------CCceE
Confidence            6677889999999999998 567999999998643  456889999999999999999999998876        34799


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +|||||.-|+..+.++-+  ..+|++.++..|....++||+|||.   ..=||||||+.|||++.+|.+|++|||+|-.+
T Consensus       105 IVMEYCGAGSiSDI~R~R--~K~L~E~EIs~iL~~TLKGL~YLH~---~~KIHRDIKAGNILLNT~G~AKLADFGVAGQL  179 (502)
T KOG0574|consen  105 IVMEYCGAGSISDIMRAR--RKPLSEQEISAVLRDTLKGLQYLHD---LKKIHRDIKAGNILLNTDGIAKLADFGVAGQL  179 (502)
T ss_pred             eehhhcCCCcHHHHHHHh--cCCccHHHHHHHHHHHHhHHHHHHH---HHHHHhhcccccEEEcccchhhhhhccccchh
Confidence            999999999999999865  5689999999999999999999998   55599999999999999999999999999655


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      .+......            ...+++.|||||++..-.|++++||||+|+...||+.|++|+.+-...  ..+...    
T Consensus       180 TDTMAKRN------------TVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPM--RAIFMI----  241 (502)
T KOG0574|consen  180 TDTMAKRN------------TVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPM--RAIFMI----  241 (502)
T ss_pred             hhhHHhhC------------ccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccccc--ceeEec----
Confidence            43221111            135678899999999999999999999999999999999999643221  000000    


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                        .....|..  .-|++++..+-+++++|+...|++|-|+.++++
T Consensus       242 --PT~PPPTF--~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  242 --PTKPPPTF--KKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             --cCCCCCCC--CChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence              00111111  236677888999999999999999999988765

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.9e-36  Score=310.89  Aligned_cols=239  Identities=26%  Similarity=0.375  Sum_probs=183.4

Q ss_pred             ccccCCCCeeEEEEEeC-CC-------cEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          446 SFMGEGSRGKLYKGRLE-NG-------TYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~-~g-------~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +.||+|+||.||+|... .+       ..||+|.+........+.+..|+.+++.++|||||++++++...        .
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~--------~   72 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCG--------D   72 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeC--------C
Confidence            36899999999999853 22       34888887654445556788999999999999999999998763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc--------E
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI--------A  589 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--------~  589 (747)
                      ..++||||+++|+|.++++..  ...+++..++.++.||+.||+|||+   .+|+||||||+||+++.++.        +
T Consensus        73 ~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~~~~~~~~~  147 (258)
T cd05078          73 ESIMVQEYVKFGSLDTYLKKN--KNLINISWKLEVAKQLAWALHFLED---KGLTHGNVCAKNVLLIREEDRKTGNPPFI  147 (258)
T ss_pred             CcEEEEecCCCCcHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEEEecccccccCCCceE
Confidence            679999999999999999764  3368999999999999999999999   89999999999999987765        6


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhC-CCCCCCChh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVG-PIVTGKGEA  667 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~  667 (747)
                      |++|||++.......                ...++..|++||.+.. ..++.++|||||||++|||++| ..|+...+.
T Consensus       148 ~l~d~g~~~~~~~~~----------------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~  211 (258)
T cd05078         148 KLSDPGISITVLPKE----------------ILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDS  211 (258)
T ss_pred             EecccccccccCCch----------------hccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccH
Confidence            899999875432211                1223456888998876 4578999999999999999999 466554332


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ........  .   ...     +    +.....++.+++.+||+.||++|||+++++++|
T Consensus       212 ~~~~~~~~--~---~~~-----~----~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         212 QKKLQFYE--D---RHQ-----L----PAPKWTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             HHHHHHHH--c---ccc-----C----CCCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            22111111  0   001     1    111223488999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=9.1e-36  Score=310.89  Aligned_cols=247  Identities=17%  Similarity=0.268  Sum_probs=190.4

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|+..+.||+|+||.||+|+ ..+++.||+|.+... .....+.+.+|++++++++||||++++++|...        +
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~   72 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVE--------N   72 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEEC--------C
Confidence            367888999999999999998 467899999998643 233446788999999999999999999999873        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|..+.       .+++.....++.|++.||.|||+   .+|+|+||||+||+++.++.+||+|||++
T Consensus        73 ~~~lv~e~~~~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nill~~~~~~~l~dfg~~  142 (279)
T cd06619          73 RISICTEFMDGGSLDVYR-------KIPEHVLGRIAVAVVKGLTYLWS---LKILHRDVKPSNMLVNTRGQVKLCDFGVS  142 (279)
T ss_pred             EEEEEEecCCCCChHHhh-------cCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCCHHHEEECCCCCEEEeeCCcc
Confidence            789999999999986542       36788889999999999999999   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh----HHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL----LNEM  673 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~----~~~~  673 (747)
                      .........              ...++..|++||.+....++.++|||||||++|||++|+.||.......    ....
T Consensus       143 ~~~~~~~~~--------------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~  208 (279)
T cd06619         143 TQLVNSIAK--------------TYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQL  208 (279)
T ss_pred             eeccccccc--------------CCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHH
Confidence            654321110              1234567889999988889999999999999999999999986422110    0000


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........     .+...   .......+.+++.+||+.+|++||+++|+++.
T Consensus       209 ~~~~~~~~-----~~~~~---~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         209 LQCIVDED-----PPVLP---VGQFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             HHHHhccC-----CCCCC---CCcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            00000000     01110   11122347899999999999999999999865

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1.1e-35  Score=306.22  Aligned_cols=251  Identities=22%  Similarity=0.366  Sum_probs=195.2

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .+|++.+.||+|+||.||+|...++..+|+|.+... .....++.+|++++++++||||+++++++...        ...
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~~~   74 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREG-AMSEEDFIEEAQVMMKLSHPKLVQLYGVCTER--------SPI   74 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCC-CCCHHHHHHHHHHHHhCCCCCeeeEEEEEccC--------Cce
Confidence            357778999999999999999777889999988643 23346789999999999999999999988763        368


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++...  ...+++..+..++.|++.|++|||+   .+++||||||+||+++.++.+||+|||+++.
T Consensus        75 ~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  149 (256)
T cd05112          75 CLVFEFMEHGCLSDYLRAQ--RGKFSQETLLGMCLDVCEGMAYLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTRF  149 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhC--ccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccccceEEEcCCCeEEECCCcceee
Confidence            9999999999999998753  3458899999999999999999998   7899999999999999999999999999865


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ..........     .      ...+..|++||......++.++|||||||++|||++ |+.|+.........+..... 
T Consensus       150 ~~~~~~~~~~-----~------~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-  217 (256)
T cd05112         150 VLDDQYTSST-----G------TKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAG-  217 (256)
T ss_pred             cccCcccccC-----C------CccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCC-
Confidence            4322110000     0      111235778888887889999999999999999998 88888754433222211111 


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                          .....+.   ..    ...+.+++.+||+.+|++|||+.|+++.|
T Consensus       218 ----~~~~~~~---~~----~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         218 ----FRLYKPR---LA----SQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             ----CCCCCCC---CC----CHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence                0111111   12    23489999999999999999999999887

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=6e-36  Score=318.78  Aligned_cols=241  Identities=20%  Similarity=0.239  Sum_probs=187.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      +|+..+.||+|+||.||+|+. .+|+.||||+++...   ....+.+..|..+++.+. |++|+++++++...       
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-------   73 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTV-------   73 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecC-------
Confidence            477789999999999999984 568999999987432   233456778999998886 57788888877653       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~Ey~~~g~L~~~i~~~---~~l~~~~~~~i~~qi~~al~~lH~---~~ivHrDikp~Nill~~~~~ikL~Dfg  146 (323)
T cd05615          74 -DRLYFVMEYVNGGDLMYHIQQV---GKFKEPQAVFYAAEISVGLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFG  146 (323)
T ss_pred             -CEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeccc
Confidence             4789999999999999988653   458999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++........            .....++..|+|||++....++.++|||||||++|||+||+.||.............
T Consensus       147 ~~~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~  214 (323)
T cd05615         147 MCKEHMVDGVT------------TRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIM  214 (323)
T ss_pred             cccccCCCCcc------------ccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            98643211110            011245678899999988889999999999999999999999997654332222111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF  720 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  720 (747)
                      ...         ...    +......+.+++.+|++.+|.+|++.
T Consensus       215 ~~~---------~~~----p~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         215 EHN---------VSY----PKSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             hCC---------CCC----CccCCHHHHHHHHHHcccCHhhCCCC
Confidence            100         011    11223347889999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=2.1e-35  Score=310.26  Aligned_cols=251  Identities=20%  Similarity=0.263  Sum_probs=194.1

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +.|++.+.||+|+||.||+|+. .+++.||+|.+........+.+.+|++++++++||||+++++++...        ..
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~   83 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWD--------GK   83 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeC--------Ce
Confidence            5688889999999999999995 45899999999866656677889999999999999999999988763        37


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++++|..++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++.
T Consensus        84 ~~lv~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~  158 (292)
T cd06644          84 LWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVSA  158 (292)
T ss_pred             EEEEEecCCCCcHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhc---CCeeecCCCcceEEEcCCCCEEEccCccce
Confidence            89999999999998877543  3458999999999999999999999   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ........            .....++..|.+||.+.     ...++.++|||||||++|||++|..|+........  .
T Consensus       159 ~~~~~~~~------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~--~  224 (292)
T cd06644         159 KNVKTLQR------------RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV--L  224 (292)
T ss_pred             eccccccc------------cceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHH--H
Confidence            43221100            01123445678888774     34468899999999999999999999865432211  1


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ........ ....       .+......+.+++.+||..+|++||++.|+++
T Consensus       225 ~~~~~~~~-~~~~-------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         225 LKIAKSEP-PTLS-------QPSKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             HHHhcCCC-ccCC-------CCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            11111100 0000       11222334888999999999999999999986

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=7.4e-36  Score=323.65  Aligned_cols=259  Identities=18%  Similarity=0.221  Sum_probs=196.2

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIES  508 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~  508 (747)
                      .++....++|++.+.||+|+||.||+|+. .+++.||+|++....   ....+.+.+|+.+++.++||||+++++++...
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            34455568999999999999999999995 468999999986422   23345678899999999999999999988763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                              ...++||||+++|+|.+++...    .++...+..++.|++.||+|||+   .+|+||||||+|||++.++.
T Consensus       116 --------~~~~lv~Ey~~gg~L~~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NIll~~~~~  180 (371)
T cd05622         116 --------RYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGH  180 (371)
T ss_pred             --------CEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEECCCCC
Confidence                    4799999999999999988642    47888888999999999999999   89999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc----CCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ----RTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~----~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      +||+|||+++..........           ....++..|+|||++...    .++.++|||||||++|||++|+.||..
T Consensus       181 ikL~DfG~a~~~~~~~~~~~-----------~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~  249 (371)
T cd05622         181 LKLADFGTCMKMNKEGMVRC-----------DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA  249 (371)
T ss_pred             EEEEeCCceeEcCcCCcccc-----------cCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCC
Confidence            99999999976532211100           113466788999988653    378999999999999999999999976


Q ss_pred             ChhhhH-HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCC--CCCHHHHHHHH
Q 044236          665 GEAFLL-NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS--RPSFEDVLWNL  727 (747)
Q Consensus       665 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~L  727 (747)
                      ...... ..+..   ........+       .......+.+++.+|+..+|.+  ||++.||+++.
T Consensus       250 ~~~~~~~~~i~~---~~~~~~~~~-------~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~  305 (371)
T cd05622         250 DSLVGTYSKIMN---HKNSLTFPD-------DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL  305 (371)
T ss_pred             CCHHHHHHHHHc---CCCcccCCC-------cCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCc
Confidence            543222 22211   110011111       1122334788889999844443  78999998764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=1.6e-35  Score=307.36  Aligned_cols=252  Identities=19%  Similarity=0.244  Sum_probs=182.7

Q ss_pred             cccCCCCeeEEEEEeCC---CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEE
Q 044236          447 FMGEGSRGKLYKGRLEN---GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~~~---g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      .||+|+||+||+|+...   ...+|+|.+.... ......+.+|++.++.++||||++++++|...        ...++|
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~--------~~~~lv   73 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIES--------IPYLLV   73 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCC--------CceEEE
Confidence            58999999999997433   4568888776432 33345788999999999999999999998763        368999


Q ss_pred             EeccCCCCcccccccCCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          523 YEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       523 ~Ey~~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      |||+++|+|.+++.....  ....++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        74 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~  150 (269)
T cd05042          74 LEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ---ADFIHSDLALRNCQLTADLSVKIGDYGLALEQ  150 (269)
T ss_pred             EEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh---cCEecccccHhheEecCCCcEEEecccccccc
Confidence            999999999999875422  2235678889999999999999999   88999999999999999999999999998653


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeee-------ccCCCcCCceeehhHHHHHHhh-CCCCCCCChh-hhHH
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-------IQRTKLEDDVYNFGFILLESLV-GPIVTGKGEA-FLLN  671 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~-~~~~  671 (747)
                      ..........          ....+..|++||+..       ...++.++|||||||++|||++ |..|+..... +...
T Consensus       151 ~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~  220 (269)
T cd05042         151 YPEDYYITKD----------CHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLK  220 (269)
T ss_pred             ccchheeccC----------CCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHH
Confidence            3221110000          011223467777653       2356789999999999999999 6778764432 2222


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      .....    ......++.+...++    ..+.+++..|| .||++|||+.||++.|.
T Consensus       221 ~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         221 QVVRE----QDIKLPKPQLDLKYS----DRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             HHhhc----cCccCCCCcccccCC----HHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            22111    111222333222333    33677888899 59999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=1.8e-35  Score=304.76  Aligned_cols=249  Identities=21%  Similarity=0.290  Sum_probs=193.1

Q ss_pred             ccccCCCCeeEEEEEeCC--C--cEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRLEN--G--TYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~--g--~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|.+.+  +  ..||||.+..... ...+.+.+|+.++++++||||+++++++..         ...+
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---------~~~~   71 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT---------HPLM   71 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC---------CeEE
Confidence            468999999999998533  3  3699999986544 556789999999999999999999998865         2689


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|.+++..... ..++|.....++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++..
T Consensus        72 ~v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~  147 (257)
T cd05040          72 MVTELAPLGSLLDRLRKDAL-GHFLISTLCDYAVQIANGMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRAL  147 (257)
T ss_pred             EEEEecCCCcHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHHHHh---CCccccccCcccEEEecCCEEEeccccccccc
Confidence            99999999999999976432 468999999999999999999999   89999999999999999999999999999765


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhh-HHHHHhccC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFL-LNEMASFGS  678 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~-~~~~~~~~~  678 (747)
                      ...........         ...+...|.+||.+....++.++|||||||++|||+| |+.|+....... ...+.... 
T Consensus       148 ~~~~~~~~~~~---------~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~-  217 (257)
T cd05040         148 PQNEDHYVMEE---------HLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEG-  217 (257)
T ss_pred             cccccceeccc---------CCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcC-
Confidence            43221110000         0122345788888888889999999999999999999 999986433222 22221110 


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                        .  ...       .+...+..+.+++.+||+.+|++||++.|+++.|.
T Consensus       218 --~--~~~-------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         218 --E--RLE-------RPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             --C--cCC-------CCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence              0  000       11122345889999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=6.3e-36  Score=318.64  Aligned_cols=237  Identities=21%  Similarity=0.254  Sum_probs=181.9

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHH-HHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLD-FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~-~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      ++||+|+||.||+|+. .+|+.||+|++....   ......+..|.. +++.++|||||++++++...        +..+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~--------~~~~   72 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTA--------EKLY   72 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcC--------CEEE
Confidence            3689999999999995 568999999987432   223344555554 57889999999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++..   ...+++.....++.||++||.|||+   .+|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~  146 (321)
T cd05603          73 FVLDYVNGGELFFHLQR---ERCFLEPRARFYAAEVASAIGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (321)
T ss_pred             EEEcCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEccCCCCccC
Confidence            99999999999988865   3457888888999999999999998   88999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ......            ....+++..|++||.+....++.++|||||||++|||++|+.||...+..........  ..
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~--~~  212 (321)
T cd05603         147 VEPEET------------TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILH--KP  212 (321)
T ss_pred             CCCCCc------------cccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhc--CC
Confidence            211110            0113456778999999888899999999999999999999999876543332221110  00


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE  721 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  721 (747)
                             ..    .+......+.+++.+|++.||.+||++.
T Consensus       213 -------~~----~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         213 -------LQ----LPGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             -------CC----CCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence                   01    1112233478899999999999999754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1.2e-35  Score=311.50  Aligned_cols=257  Identities=22%  Similarity=0.318  Sum_probs=195.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|++.+.||+|+||.||+|+..      ++..||+|.+.... ....+.+.+|+.++++++||||++++++|...   
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~---   80 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVG---   80 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCC---
Confidence            467889999999999999999853      46789999987432 23346788999999999999999999988763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCC-------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENC-------------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSF  572 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  572 (747)
                           ...++||||+++|+|.+++....                   ....+++..++.++.|++.||+|||+   .+++
T Consensus        81 -----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~---~~i~  152 (288)
T cd05050          81 -----KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFV  152 (288)
T ss_pred             -----CccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCee
Confidence                 36899999999999999986421                   11347889999999999999999998   7999


Q ss_pred             cCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHH
Q 044236          573 SNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL  652 (747)
Q Consensus       573 HrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl  652 (747)
                      ||||||+||+++.++.+||+|||+++............    .      ......|++||......++.++|||||||++
T Consensus       153 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~----~------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il  222 (288)
T cd05050         153 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASE----N------DAIPIRWMPPESIFYNRYTTESDVWAYGVVL  222 (288)
T ss_pred             cccccHhheEecCCCceEECccccceecccCccccccC----C------CccChhhcCHHHHhcCCCCchhHHHHHHHHH
Confidence            99999999999999999999999986543221110000    0      0112357788888888899999999999999


Q ss_pred             HHHhh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          653 LESLV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       653 ~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      |||++ |..|+.............   ....   .      .++......+.+++.+||+.+|++|||+.|+++.|+
T Consensus       223 ~el~~~~~~p~~~~~~~~~~~~~~---~~~~---~------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~  287 (288)
T cd05050         223 WEIFSYGMQPYYGMAHEEVIYYVR---DGNV---L------SCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQ  287 (288)
T ss_pred             HHHHhCCCCCCCCCCHHHHHHHHh---cCCC---C------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence            99998 777765433222111111   1100   0      011222345889999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=5.2e-36  Score=313.42  Aligned_cols=271  Identities=21%  Similarity=0.311  Sum_probs=198.0

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-----CCcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-----~g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|+..+.||+|+||.||+|++.     +++.||||.++..... ..+.+.+|++++++++||||+++++++...+    
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~----   79 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPG----   79 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCC----
Confidence            35677889999999999999853     3689999999754432 4678999999999999999999999886632    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....++||||+++|+|.+++...  ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        80 --~~~~~lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~d  152 (284)
T cd05038          80 --GRSLRLIMEYLPSGSLRDYLQRH--RDQINLKRLLLFSSQICKGMDYLGS---QRYIHRDLAARNILVESEDLVKISD  152 (284)
T ss_pred             --CCceEEEEecCCCCCHHHHHHhC--ccccCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcc
Confidence              34689999999999999999764  2358999999999999999999998   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||++...............         ......|.+||......++.++|||||||++|||+||..|+...........
T Consensus       153 fg~~~~~~~~~~~~~~~~~---------~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~  223 (284)
T cd05038         153 FGLAKVLPEDKDYYYVKEP---------GESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMI  223 (284)
T ss_pred             cccccccccCCcceeccCC---------CCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcccc
Confidence            9999765422211110000         0112245677777777889999999999999999999888754322111000


Q ss_pred             HhccCcC---CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          674 ASFGSQD---GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       674 ~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      .......   ...+.+........+.....++.+++.+||+.+|++||||.||+++|+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         224 GIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             ccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            0000000   00000000000011122234588999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=1.5e-35  Score=317.52  Aligned_cols=262  Identities=20%  Similarity=0.311  Sum_probs=199.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeC--------CCcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE--------NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESG  509 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~  509 (747)
                      .+|.+.+.||+|+||.||+|+..        .+..||+|.++.. .....+.+.+|+++++++ +||||++++++|... 
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-   90 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD-   90 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccC-
Confidence            45888999999999999999732        1247899988743 233456889999999999 799999999998763 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                             ...++||||+++|+|.+++....             +...++|..++.++.|++.||+|||+   .+|+||||
T Consensus        91 -------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~givH~dl  160 (334)
T cd05100          91 -------GPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS---QKCIHRDL  160 (334)
T ss_pred             -------CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCeecccc
Confidence                   36899999999999999986532             12358899999999999999999999   89999999


Q ss_pred             CCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHh
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ell  656 (747)
                      ||+|||++.++.+||+|||+++............   .       ...+..|++||.+....++.++|||||||++|||+
T Consensus       161 kp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~---~-------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~  230 (334)
T cd05100         161 AARNVLVTEDNVMKIADFGLARDVHNIDYYKKTT---N-------GRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIF  230 (334)
T ss_pred             ccceEEEcCCCcEEECCcccceeccccccccccc---C-------CCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHH
Confidence            9999999999999999999997654322111000   0       01123578889888888999999999999999999


Q ss_pred             h-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          657 V-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       657 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      + |..|+..............   ...     +.....+    ...+.+++.+||+.+|++|||+.|++..|+.+....
T Consensus       231 ~~g~~p~~~~~~~~~~~~~~~---~~~-----~~~~~~~----~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~  297 (334)
T cd05100         231 TLGGSPYPGIPVEELFKLLKE---GHR-----MDKPANC----THELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVT  297 (334)
T ss_pred             hcCCCCCCCCCHHHHHHHHHc---CCC-----CCCCCCC----CHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhc
Confidence            8 7888765443332222111   000     0111122    334889999999999999999999999999887544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=8.7e-36  Score=318.04  Aligned_cols=239  Identities=21%  Similarity=0.248  Sum_probs=182.6

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHH-HHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLD-FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~-~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|+. .+++.||+|++....   ......+..|.. +++.++||||+++++++...        +..+
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~--------~~~~   72 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA--------DKLY   72 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcC--------CeEE
Confidence            3689999999999995 468899999987432   222334444444 56789999999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|.+++...   ..+.+.....++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~L~~lH~---~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~  146 (325)
T cd05602          73 FVLDYINGGELFYHLQRE---RCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKEN  146 (325)
T ss_pred             EEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEEccCCCCccc
Confidence            999999999999988753   357788888899999999999999   89999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHHhccCc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMASFGSQ  679 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~~~~~~  679 (747)
                      ......            ....+++..|++||++....++.++|||||||++|||++|+.||........ ..+...   
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~---  211 (325)
T cd05602         147 IEHNGT------------TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNK---  211 (325)
T ss_pred             ccCCCC------------cccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhC---
Confidence            211110            0113467789999999888899999999999999999999999875443222 222110   


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL  724 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  724 (747)
                      .       .......    ...+.+++.+|++.||.+||++.+.+
T Consensus       212 ~-------~~~~~~~----~~~~~~li~~~l~~~p~~R~~~~~~~  245 (325)
T cd05602         212 P-------LQLKPNI----TNSARHLLEGLLQKDRTKRLGAKDDF  245 (325)
T ss_pred             C-------cCCCCCC----CHHHHHHHHHHcccCHHHCCCCCCCH
Confidence            0       0011122    33478899999999999999877543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=2.7e-35  Score=315.16  Aligned_cols=254  Identities=19%  Similarity=0.240  Sum_probs=190.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+++. .+++.+|+|++...   +......+..|+.++..++|+||+++++++...       
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-------   73 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDE-------   73 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecC-------
Confidence            4688899999999999999995 45789999998642   223345678899999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++++.  ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~~~~qi~~al~~lH~---~~iiHrDlkp~Nili~~~~~~kL~DfG  147 (332)
T cd05623          74 -NNLYLVMDYYVGGDLLTLLSKF--EDRLPEDMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFG  147 (332)
T ss_pred             -CEEEEEEeccCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEeecc
Confidence             4789999999999999999753  3458999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-  669 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-  669 (747)
                      +++.........           .....++..|++||++.     ...++.++|||||||++|||++|+.||....... 
T Consensus       148 ~a~~~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~  216 (332)
T cd05623         148 SCLKLMEDGTVQ-----------SSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET  216 (332)
T ss_pred             hheecccCCcce-----------ecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHH
Confidence            986543211110           01124567889999875     3468899999999999999999999987544322 


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCC--CCCCHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS--SRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~--~RPs~~evl~~  726 (747)
                      ...+..   ...  +..-|.....++    ..+.+++.+|+..+|.  .|+++.|++++
T Consensus       217 ~~~i~~---~~~--~~~~p~~~~~~s----~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         217 YGKIMN---HKE--RFQFPAQVTDVS----EDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             HHHHhC---CCc--cccCCCccccCC----HHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            221211   110  000111111223    3477788887755444  47899999876

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.1e-35  Score=311.89  Aligned_cols=264  Identities=20%  Similarity=0.239  Sum_probs=191.8

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcC---CCCCcceeeeeeeccCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKL---QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l---~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      +|++.+.||+|+||.||+|+. .+|+.||+|.++...  ......+.+|+++++++   +||||+++++++....   ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~---~~   77 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSR---TD   77 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeecccc---CC
Confidence            477889999999999999984 568999999987432  22234556777777665   7999999999886532   11


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++||||+++ +|.+++.... ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus        78 ~~~~~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~kl~df  152 (288)
T cd07863          78 RETKVTLVFEHVDQ-DLRTYLDKVP-PPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGQVKLADF  152 (288)
T ss_pred             CCceEEEEEccccc-CHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECcc
Confidence            23468999999975 8888886532 3458999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      |+++........             ....++..|++||.+....++.++|||||||++|||++|++||..... ..+..+
T Consensus       153 g~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~  219 (288)
T cd07863         153 GLARIYSCQMAL-------------TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKI  219 (288)
T ss_pred             CccccccCcccC-------------CCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHH
Confidence            998765322110             012345578899998888899999999999999999999988864432 222222


Q ss_pred             HhccCcCCc----c------ccccccc---cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGR----R------RIVDPVV---LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~----~------~~~d~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .........    .      ....+..   ...+.++....+.+++.+|++.||++|||+.|++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         220 FDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             HHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            221110000    0      0000000   01111233455789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-35  Score=310.26  Aligned_cols=253  Identities=21%  Similarity=0.320  Sum_probs=196.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||+|.++.......+.+.+|++++++++||||+++++++...        .
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~   75 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYE--------N   75 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecC--------C
Confidence            35688889999999999999995 46899999999866666667899999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~nili~~~~~~~l~d~g~~  150 (280)
T cd06611          76 KLWILIEFCDGGALDSIMLEL--ERGLTEPQIRYVCRQMLEALNFLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVS  150 (280)
T ss_pred             eEEEEeeccCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEECCCCCEEEccCccc
Confidence            789999999999999998753  3468999999999999999999999   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      ..........            ....++..|++||.+.     ...++.++|||||||++|||++|+.|+...+....  
T Consensus       151 ~~~~~~~~~~------------~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~--  216 (280)
T cd06611         151 AKNKSTLQKR------------DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRV--  216 (280)
T ss_pred             hhhccccccc------------ceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHH--
Confidence            6543211100            1123445677777753     34467899999999999999999999875432221  


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +.......      .+.+  ..+......+.+++.+||+.+|.+||++.++++.
T Consensus       217 ~~~~~~~~------~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         217 LLKILKSE------PPTL--DQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             HHHHhcCC------CCCc--CCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            11111100      0000  0111223347889999999999999999999865

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=6.5e-36  Score=323.21  Aligned_cols=265  Identities=17%  Similarity=0.171  Sum_probs=195.5

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|+..+.||+|+||.||+|.. ..++.||||++...  .......+.+|+.+++.++||||+++++++.....  ..
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~   92 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKS--LE   92 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccc--cc
Confidence            457899999999999999999984 56899999998743  23344677889999999999999999998865321  11


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++||||+++ ++.+.+..     .+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        93 ~~~~~~lv~e~~~~-~l~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~---~givHrDikp~Nill~~~~~~kl~Df  163 (355)
T cd07874          93 EFQDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF  163 (355)
T ss_pred             ccceeEEEhhhhcc-cHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEECCCCCEEEeeC
Confidence            23467999999975 67666643     37888899999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      |+++........             ....++..|+|||.+....++.++|||||||++|||++|+.||...+. ......
T Consensus       164 g~~~~~~~~~~~-------------~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~  230 (355)
T cd07874         164 GLARTAGTSFMM-------------TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKV  230 (355)
T ss_pred             cccccCCCcccc-------------CCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            999754322110             012456678999999888899999999999999999999999865432 111111


Q ss_pred             HhccCc--------------------CCcccccccc------c--cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQ--------------------DGRRRIVDPV------V--LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~--------------------~~~~~~~d~~------~--~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......                    ........+.      .  ...........+.+++.+|++.||++|||+.|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~  310 (355)
T cd07874         231 IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQ  310 (355)
T ss_pred             HHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhc
Confidence            110000                    0000000000      0  00111223456789999999999999999999997


Q ss_pred             H
Q 044236          726 N  726 (747)
Q Consensus       726 ~  726 (747)
                      .
T Consensus       311 h  311 (355)
T cd07874         311 H  311 (355)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.6e-35  Score=310.15  Aligned_cols=254  Identities=18%  Similarity=0.274  Sum_probs=194.2

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||.||+++.. +|+.||+|.++.. .......+.+|++++++++||||+++++++...        +
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--------~   72 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIE--------G   72 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecC--------C
Confidence            36788899999999999999964 7899999988743 333456788999999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|..+++.......+++..+..++.|++.||.|||+.  .+|+||||||+||+++.++.+||+|||++
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~  150 (286)
T cd06622          73 AVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVS  150 (286)
T ss_pred             eEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCc
Confidence            7899999999999999887532234689999999999999999999963  48999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeecc------CCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ------RTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      +........              ...++..|.+||.+...      .++.++|||||||++|||++|+.||.........
T Consensus       151 ~~~~~~~~~--------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~  216 (286)
T cd06622         151 GNLVASLAK--------------TNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIF  216 (286)
T ss_pred             ccccCCccc--------------cCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHH
Confidence            654321110              01233456778876443      3578999999999999999999998654322211


Q ss_pred             H-HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          672 E-MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       672 ~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      . +......      ..+.    .+......+.+++.+||+.+|++||++.+++..-
T Consensus       217 ~~~~~~~~~------~~~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~  263 (286)
T cd06622         217 AQLSAIVDG------DPPT----LPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHP  263 (286)
T ss_pred             HHHHHHhhc------CCCC----CCcccCHHHHHHHHHHcccCcccCCCHHHHhcCh
Confidence            1 1111100      0111    1223444588999999999999999999998743

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1.8e-35  Score=316.04  Aligned_cols=266  Identities=18%  Similarity=0.224  Sum_probs=190.2

Q ss_pred             ccccccCC--CCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          444 SLSFMGEG--SRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       444 ~~~~iG~G--~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +.++||+|  +||+||+++ ..+|+.||||+++...  ....+.+.+|+++++.++|||||+++++|...        +.
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~--------~~   73 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD--------NE   73 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEEC--------CE
Confidence            45789999  788999998 4679999999997432  23345677899999999999999999999873        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++..+. ...+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.++++|||.+.
T Consensus        74 ~~lv~e~~~~~~l~~~~~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~  149 (327)
T cd08227          74 LWVVTSFMAYGSAKDLICTHF-MDGMSELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNL  149 (327)
T ss_pred             EEEEEeccCCCcHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCChhhEEEecCCcEEEcccchhh
Confidence            899999999999999986532 2358999999999999999999998   789999999999999999999999998764


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ............ ....    ....++.+|++||.+..  ..++.++|||||||++|||++|+.||..............
T Consensus       150 ~~~~~~~~~~~~-~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~  224 (327)
T cd08227         150 SMINHGQRLRVV-HDFP----KYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLN  224 (327)
T ss_pred             cccccccccccc-cccc----ccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhc
Confidence            332111100000 0000    01123456889998865  4588999999999999999999999874332211110000


Q ss_pred             cCcCCc----------------ccccc-------------c----cccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHH
Q 044236          677 GSQDGR----------------RRIVD-------------P----VVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV  723 (747)
Q Consensus       677 ~~~~~~----------------~~~~d-------------~----~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev  723 (747)
                      ......                ....+             +    .............+.+++.+||+.||++|||+.|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~el  304 (327)
T cd08227         225 GTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTL  304 (327)
T ss_pred             CCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHH
Confidence            000000                00000             0    00001112334568899999999999999999999


Q ss_pred             HHH
Q 044236          724 LWN  726 (747)
Q Consensus       724 l~~  726 (747)
                      ++.
T Consensus       305 l~~  307 (327)
T cd08227         305 LNH  307 (327)
T ss_pred             hcC
Confidence            864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-35  Score=314.66  Aligned_cols=251  Identities=22%  Similarity=0.250  Sum_probs=204.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch---hcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK---YSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~  513 (747)
                      ...|++.+.||+|.||.||+++. .+|+.+|+|.+.....   .....+.+|+++|+++. |||||.++++|...     
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~-----  108 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDP-----  108 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcC-----
Confidence            35677889999999999999995 4599999999975443   24568999999999998 99999999999874     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC----CCcE
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE----HRIA  589 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~----~~~~  589 (747)
                         ..+++|||++.+|.|++.+...    .++......++.|++.|+.|||+   .+|+||||||+|+|+..    ++.+
T Consensus       109 ---~~~~lvmEL~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH~---~gvvHrDlKpEN~L~~~~~~~~~~i  178 (382)
T KOG0032|consen  109 ---DSVYLVMELCEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLHS---LGVVHRDLKPENLLLASKDEGSGRI  178 (382)
T ss_pred             ---CeEEEEEEecCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHh---CCceeccCCHHHeeeccccCCCCcE
Confidence               4899999999999999998764    28999999999999999999999   89999999999999963    3579


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL  669 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~  669 (747)
                      |++|||+|+.......             ...++|++.|+|||++....|+.++||||.||++|.|+.|..||.......
T Consensus       179 k~~DFGla~~~~~~~~-------------~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~  245 (382)
T KOG0032|consen  179 KLIDFGLAKFIKPGER-------------LHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFE  245 (382)
T ss_pred             EEeeCCCceEccCCce-------------EeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhH
Confidence            9999999987654211             223678899999999999999999999999999999999988887554333


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......+..         .......+.....+.+++..++..||.+|+|+.+++++
T Consensus       246 ~~~~i~~~~~---------~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  246 IFLAILRGDF---------DFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             HHHHHHcCCC---------CCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence            3222221111         11122233445558899999999999999999999984

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-35  Score=316.20  Aligned_cols=254  Identities=19%  Similarity=0.252  Sum_probs=190.5

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+++. .+++.||||++...   +....+.+.+|+.++..++|+||+++++++...       
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-------   73 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDE-------   73 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecC-------
Confidence            4688999999999999999994 56899999999742   233446688999999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...  ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg  147 (331)
T cd05597          74 -NNLYLVMDYYVGGDLLTLLSKF--EDRLPEDMARFYLAEMVLAIDSVHQ---LGYVHRDIKPDNVLLDKNGHIRLADFG  147 (331)
T ss_pred             -CeEEEEEecCCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEECCCCHHHEEECCCCCEEEEECC
Confidence             4799999999999999998653  3458899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-h
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-L  669 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~  669 (747)
                      +++.........           .....++..|++||++.     ...++.++|||||||++|||++|+.||...... .
T Consensus       148 ~~~~~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~  216 (331)
T cd05597         148 SCLRLLADGTVQ-----------SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET  216 (331)
T ss_pred             ceeecCCCCCcc-----------ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHH
Confidence            986543221110           01124567788999875     245788999999999999999999998754322 2


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCC--CCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP--EPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~--dP~~RPs~~evl~~  726 (747)
                      ...+...   ......  +.....++.    .+.+++.+|+..  ++..||++.+++.+
T Consensus       217 ~~~i~~~---~~~~~~--~~~~~~~~~----~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         217 YGKIMNH---KEHFQF--PPDVTDVSE----EAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             HHHHHcC---CCcccC--CCccCCCCH----HHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            2222111   100011  111112233    366777776654  44448899999875

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1e-35  Score=342.16  Aligned_cols=258  Identities=15%  Similarity=0.229  Sum_probs=195.3

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|.+++.||+|+||.||+|+. ..+..||+|.+...  .......+..|+.++++++|||||+++++|....     
T Consensus        11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~-----   85 (1021)
T PTZ00266         11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKA-----   85 (1021)
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecC-----
Confidence            356899999999999999999994 56889999998743  2334567889999999999999999999886532     


Q ss_pred             CCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCC----CCcccCCCCCCceeecC----
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVI----SGSFSNRLTTNNILLDE----  585 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~----~~ivHrDlk~~NILld~----  585 (747)
                       ...++|||||+++|+|.++|.... ....+++..++.|+.||+.||+|||+...    .+||||||||+||||+.    
T Consensus        86 -~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~  164 (1021)
T PTZ00266         86 -NQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRH  164 (1021)
T ss_pred             -CCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccc
Confidence             347899999999999999987531 23469999999999999999999998431    35999999999999964    


Q ss_pred             -------------CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhH
Q 044236          586 -------------HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGF  650 (747)
Q Consensus       586 -------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGv  650 (747)
                                   ...+||+|||+++.+......             ....+++.|++||++..  ..++.++|||||||
T Consensus       165 lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~-------------~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~  231 (1021)
T PTZ00266        165 IGKITAQANNLNGRPIAKIGDFGLSKNIGIESMA-------------HSCVGTPYYWSPELLLHETKSYDDKSDMWALGC  231 (1021)
T ss_pred             cccccccccccCCCCceEEccCCccccccccccc-------------cccCCCccccCHHHHhccCCCCCchhHHHHHHH
Confidence                         335899999999754322110             01245678899998743  45889999999999


Q ss_pred             HHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          651 ILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       651 vl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      |+|||+||+.||......  ..+.......     .+.. ....    ...+.+|+..||+.+|.+||++.|++..
T Consensus       232 ILYELLTGk~PF~~~~~~--~qli~~lk~~-----p~lp-i~~~----S~eL~dLI~~~L~~dPeeRPSa~QlL~h  295 (1021)
T PTZ00266        232 IIYELCSGKTPFHKANNF--SQLISELKRG-----PDLP-IKGK----SKELNILIKNLLNLSAKERPSALQCLGY  295 (1021)
T ss_pred             HHHHHHHCCCCCCcCCcH--HHHHHHHhcC-----CCCC-cCCC----CHHHHHHHHHHhcCChhHCcCHHHHhcc
Confidence            999999999998654321  1111111000     0000 0112    2348899999999999999999999853

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=5e-36  Score=313.76  Aligned_cols=253  Identities=17%  Similarity=0.259  Sum_probs=196.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||.||+++. ++|+.||+|++.... ....+.+.+|+++++.++||||+++++++...        .
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~   76 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNE--------N   76 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecC--------C
Confidence            5678889999999999999984 568999999886432 33456789999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++...   ..+++..+..++.+++.||.|||+.  .+|+||||||+||+++.++.++|+|||++
T Consensus        77 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~  151 (284)
T cd06620          77 NICMCMEFMDCGSLDRIYKKG---GPIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVS  151 (284)
T ss_pred             EEEEEEecCCCCCHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCcc
Confidence            789999999999999988753   4589999999999999999999963  47999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh---------
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF---------  668 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~---------  668 (747)
                      .........              ...++..|++||.+....++.++|||||||++||++||+.||......         
T Consensus       152 ~~~~~~~~~--------------~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~  217 (284)
T cd06620         152 GELINSIAD--------------TFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMG  217 (284)
T ss_pred             cchhhhccC--------------ccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhH
Confidence            644221110              123456788899887788899999999999999999999998743321         


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ............      .+.+.   .......+.+++.+||+.||++|||+.|++++..
T Consensus       218 ~~~~~~~~~~~~------~~~~~---~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~  268 (284)
T cd06620         218 ILDLLQQIVQEP------PPRLP---SSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPP  268 (284)
T ss_pred             HHHHHHHHhhcc------CCCCC---chhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcc
Confidence            011111110000      01111   1113345889999999999999999999998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.5e-35  Score=310.10  Aligned_cols=250  Identities=18%  Similarity=0.209  Sum_probs=192.1

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      |...+.||+|+||+||+|+. .+++.||+|.+....   ......+.+|++++++++|+||+++++++...        +
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~--------~   73 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETK--------D   73 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecC--------C
Confidence            56678899999999999985 568999999986432   22334578899999999999999999888763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++.... ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~ql~~~l~~lH~---~~iiH~dikp~Nili~~~~~~kl~Dfg~~  149 (285)
T cd05632          74 ALCLVLTIMNGGDLKFHIYNMG-NPGFEEERALFYAAEILCGLEDLHR---ENTVYRDLKPENILLDDYGHIRISDLGLA  149 (285)
T ss_pred             EEEEEEEeccCccHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEECCCCCEEEecCCcc
Confidence            7899999999999998876432 3359999999999999999999998   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~~~  676 (747)
                      +........             ....++..|++||.+....++.++|||||||++|||++|..||........ ..+...
T Consensus       150 ~~~~~~~~~-------------~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~  216 (285)
T cd05632         150 VKIPEGESI-------------RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRR  216 (285)
T ss_pred             eecCCCCcc-------------cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            654321110             012345678899998888899999999999999999999999875433221 111111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  726 (747)
                      ....      ....    +......+.+++..||+.||++||+     +.+++..
T Consensus       217 ~~~~------~~~~----~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05632         217 VLET------EEVY----SAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRH  261 (285)
T ss_pred             hhcc------cccc----CccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcC
Confidence            1000      0111    1222334788999999999999999     6666653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=6.6e-36  Score=316.78  Aligned_cols=262  Identities=17%  Similarity=0.211  Sum_probs=192.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|.+.+.||+|+||.||+|+. .+++.||+|+++... ......+.+|++++++++||||+++++++...        +
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~   77 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTD--------K   77 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeC--------C
Confidence            5688899999999999999985 468899999987443 22334677899999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++ +|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~  151 (309)
T cd07872          78 SLTLVFEYLDK-DLKQYMDDC--GNIMSMHNVKIFLYQILRGLAYCHR---RKVLHRDLKPQNLLINERGELKLADFGLA  151 (309)
T ss_pred             eEEEEEeCCCC-CHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECccccc
Confidence            78999999975 888877653  3458889999999999999999999   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      +..........            ...++..|++||.+.. ..++.++|||||||++|||+||+.||..... +....+..
T Consensus       152 ~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~  219 (309)
T cd07872         152 RAKSVPTKTYS------------NEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFR  219 (309)
T ss_pred             eecCCCccccc------------cccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence            65322111000            0123456788887654 4688999999999999999999998865432 22222211


Q ss_pred             ccCcCC---cc------cccc---ccccC----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          676 FGSQDG---RR------RIVD---PVVLT----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       676 ~~~~~~---~~------~~~d---~~~~~----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ......   ..      ...+   +....    .........+.+++.+|++.||.+|||+.|++++-
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~  287 (309)
T cd07872         220 LLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHA  287 (309)
T ss_pred             HhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcCh
Confidence            110000   00      0000   00000    00112234578999999999999999999998744

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=3.8e-35  Score=302.89  Aligned_cols=253  Identities=18%  Similarity=0.292  Sum_probs=197.1

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||.||+|....+..+|+|.+... ....+.+.+|++++++++|+||+++++++..         ...
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---------~~~   75 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK---------EPI   75 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCC-hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC---------CCe
Confidence            568889999999999999999777788999988743 2345678899999999999999999988764         257


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      +++|||+++|+|.+++.... ...++|..++.++.|++.||+|||+   .+++||||||+||+++.++.+||+|||.++.
T Consensus        76 ~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~  151 (260)
T cd05073          76 YIITEFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARV  151 (260)
T ss_pred             EEEEEeCCCCcHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCCcceee
Confidence            99999999999999997532 3458899999999999999999998   7899999999999999999999999999875


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ..........     .      ..+...|.+||.+....++.++|||||||++||++| |..|+............... 
T Consensus       152 ~~~~~~~~~~-----~------~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~-  219 (260)
T cd05073         152 IEDNEYTARE-----G------AKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG-  219 (260)
T ss_pred             ccCCCccccc-----C------CcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCC-
Confidence            5432111100     0      011235778888888889999999999999999999 88888654333222211110 


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                        ..     .....    .....+.+++.+||+.+|++||++.++...|+.
T Consensus       220 --~~-----~~~~~----~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         220 --YR-----MPRPE----NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             --CC-----CCCcc----cCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence              00     00111    223348899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=8.3e-36  Score=312.06  Aligned_cols=250  Identities=19%  Similarity=0.239  Sum_probs=193.2

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      |+..+.||+|+||.||++.. .+++.||||.+....   ......+.+|+.++++++|+||+++++++...        +
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~--------~   73 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETK--------D   73 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecC--------C
Confidence            66778899999999999984 568999999986432   22234577899999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++.... ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus        74 ~~~lv~e~~~g~~L~~~l~~~~-~~~l~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nil~~~~~~~~l~Dfg~~  149 (285)
T cd05630          74 ALCLVLTLMNGGDLKFHIYHMG-EAGFEEGRAVFYAAEICCGLEDLHQ---ERIVYRDLKPENILLDDHGHIRISDLGLA  149 (285)
T ss_pred             EEEEEEEecCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeccce
Confidence            7899999999999999885432 3458899999999999999999998   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH-HHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE-MASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~-~~~~  676 (747)
                      ..........             ...++..|++||.+....++.++|||||||++|||++|+.||.......... ....
T Consensus       150 ~~~~~~~~~~-------------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~  216 (285)
T cd05630         150 VHVPEGQTIK-------------GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERL  216 (285)
T ss_pred             eecCCCcccc-------------CCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhh
Confidence            6543221110             1134567889999988889999999999999999999999997533211111 1110


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  726 (747)
                      .. .     ........++    ..+.+++.+||+.||++|||     +.|++++
T Consensus       217 ~~-~-----~~~~~~~~~~----~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h  261 (285)
T cd05630         217 VK-E-----VQEEYSEKFS----PDARSLCKMLLCKDPKERLGCQGGGAREVKEH  261 (285)
T ss_pred             hh-h-----hhhhcCccCC----HHHHHHHHHHhhcCHHHccCCCCCchHHHHcC
Confidence            00 0     0011112223    34789999999999999999     8888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.5e-35  Score=316.22  Aligned_cols=239  Identities=18%  Similarity=0.220  Sum_probs=183.3

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||+||+|+. .+++.||||+++...   ....+.+.+|+.++.++ +||||+++++++...        +..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--------~~~~   72 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTT--------SRLF   72 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeC--------CEEE
Confidence            3699999999999985 568999999998532   23445678899999888 699999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~  146 (327)
T cd05617          73 LVIEYVNGGDLMFHMQRQ---RKLPEEHARFYAAEICIALNFLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEG  146 (327)
T ss_pred             EEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEeCCCCEEEeccccceec
Confidence            999999999999888653   458999999999999999999999   89999999999999999999999999998642


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh----hhHHHHHhc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA----FLLNEMASF  676 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~----~~~~~~~~~  676 (747)
                      ......            ....+++..|+|||.+....++.++|||||||++|||++|+.||.....    .........
T Consensus       147 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~  214 (327)
T cd05617         147 LGPGDT------------TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQV  214 (327)
T ss_pred             cCCCCc------------eecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHH
Confidence            211100            0113466789999999888999999999999999999999999853111    111111110


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF  720 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  720 (747)
                      ....      ...+    +......+.+++.+||+.||++||++
T Consensus       215 ~~~~------~~~~----p~~~~~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         215 ILEK------PIRI----PRFLSVKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             HHhC------CCCC----CCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            0000      0011    11223347889999999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=2.9e-35  Score=314.63  Aligned_cols=254  Identities=17%  Similarity=0.245  Sum_probs=191.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+++. .+++.||+|.+...   .......+.+|+.++..++|+||+++++++...       
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~-------   73 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDE-------   73 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-------
Confidence            4788999999999999999995 46889999998742   223345678899999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~Ey~~gg~L~~~l~~~--~~~l~~~~~~~~~~qi~~~L~~lH~---~~iiHrDlkp~Nill~~~~~~kl~DfG  147 (331)
T cd05624          74 -NYLYLVMDYYVGGDLLTLLSKF--EDRLPEDMARFYIAEMVLAIHSIHQ---LHYVHRDIKPDNVLLDMNGHIRLADFG  147 (331)
T ss_pred             -CEEEEEEeCCCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCchHHEEEcCCCCEEEEecc
Confidence             4789999999999999999753  3458899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----cCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-  669 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-  669 (747)
                      +++..........           ....++..|++||.+..     ..++.++|||||||++|||++|+.||....... 
T Consensus       148 ~a~~~~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~  216 (331)
T cd05624         148 SCLKMNQDGTVQS-----------SVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET  216 (331)
T ss_pred             ceeeccCCCceee-----------ccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHH
Confidence            9876543211100           11245678889998764     467889999999999999999999987544322 


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCC--CCCHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS--RPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~  726 (747)
                      ...+..   ...... + |......    +..+.+++.+|+..++.+  |+++++++++
T Consensus       217 ~~~i~~---~~~~~~-~-p~~~~~~----~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         217 YGKIMN---HEERFQ-F-PSHITDV----SEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             HHHHHc---CCCccc-C-CCccccC----CHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            111111   110000 0 1111122    334778888888866544  5688888754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.1e-35  Score=303.66  Aligned_cols=254  Identities=21%  Similarity=0.334  Sum_probs=199.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|.+.+.||+|+||.||+|..++++.||||.+.... ....++.+|+.++++++|+||+++++++...        ..
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~   75 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEE--------EP   75 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecC--------Cc
Confidence            46788899999999999999998778889999987433 3456789999999999999999999988653        36


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++++|.+++.... ...+++..+..++.|++.|+.|||+   .+|+||||||+||+++.++.+|++|||+++
T Consensus        76 ~~~v~e~~~~~~L~~~i~~~~-~~~~~~~~~~~~~~~i~~al~~lh~---~~i~h~di~p~nili~~~~~~~l~d~g~~~  151 (261)
T cd05034          76 IYIVTEYMSKGSLLDFLKSGE-GKKLRLPQLVDMAAQIAEGMAYLES---RNYIHRDLAARNILVGENLVCKIADFGLAR  151 (261)
T ss_pred             eEEEEeccCCCCHHHHHhccc-cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcchheEEEcCCCCEEECccccce
Confidence            899999999999999997642 3468999999999999999999999   789999999999999999999999999987


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh-hHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF-LLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~-~~~~~~~~  676 (747)
                      ...........           .......|.+||......++.++|||||||++||++| |+.|+...... ....+...
T Consensus       152 ~~~~~~~~~~~-----------~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~  220 (261)
T cd05034         152 LIEDDEYTARE-----------GAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERG  220 (261)
T ss_pred             eccchhhhhhh-----------ccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence            65432111000           0011235778888888889999999999999999999 89888654322 22222111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      .         ........    +..+.+++.+|++.+|++||++.++...|+.
T Consensus       221 ~---------~~~~~~~~----~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         221 Y---------RMPRPPNC----PEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             C---------CCCCCCCC----CHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            0         00111112    3348899999999999999999999988864

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=1.7e-35  Score=311.44  Aligned_cols=249  Identities=18%  Similarity=0.324  Sum_probs=197.1

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .+|+..+.||.|+||.||+|. ..+|+.||+|.+........+.+.+|+.+++.++||||+++++++...        ..
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--------~~   90 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVG--------DE   90 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecC--------ce
Confidence            458888999999999999998 467899999999765555567788999999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|..++..    ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++
T Consensus        91 ~~lv~e~~~~~~L~~~~~~----~~l~~~~~~~i~~~l~~al~~LH~---~~i~H~dL~p~Nili~~~~~~kl~dfg~~~  163 (296)
T cd06655          91 LFVVMEYLAGGSLTDVVTE----TCMDEAQIAAVCRECLQALEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCA  163 (296)
T ss_pred             EEEEEEecCCCcHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccch
Confidence            8999999999999998864    358999999999999999999999   889999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~~  677 (747)
                      .........            ....++..|++||.+....++.++|||||||++|||++|+.||...+... ...+.. .
T Consensus       164 ~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~-~  230 (296)
T cd06655         164 QITPEQSKR------------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIAT-N  230 (296)
T ss_pred             hcccccccC------------CCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHh-c
Confidence            543221110            01134456888998888889999999999999999999999987544321 111111 0


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .   ....   .    .+......+.+++.+||..||.+||++.+|+..
T Consensus       231 ~---~~~~---~----~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~  269 (296)
T cd06655         231 G---TPEL---Q----NPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQH  269 (296)
T ss_pred             C---Cccc---C----CcccCCHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence            0   0000   0    111223348889999999999999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=2.1e-35  Score=303.93  Aligned_cols=249  Identities=23%  Similarity=0.335  Sum_probs=196.5

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ++|+..+.||+|+||.||+|+.. +++.+|+|.+.....  .+++.+|++++++++||||+++++++...        ..
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--------~~   72 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKN--------TD   72 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecC--------Cc
Confidence            57888999999999999999965 488999999875433  67899999999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .+++|||+++++|.+++...  ...++|..+..++.|++.||.|||+   .+|+||||+|+||+++.++.+||+|||++.
T Consensus        73 ~~l~~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~  147 (256)
T cd06612          73 LWIVMEYCGAGSVSDIMKIT--NKTLTEEEIAAILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSG  147 (256)
T ss_pred             EEEEEecCCCCcHHHHHHhC--ccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEECCCCcEEEcccccch
Confidence            89999999999999998653  3468999999999999999999998   789999999999999999999999999987


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .........            ....++..|.+||.+....++.++|||||||++|||++|+.|+.............  .
T Consensus       148 ~~~~~~~~~------------~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~--~  213 (256)
T cd06612         148 QLTDTMAKR------------NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIP--N  213 (256)
T ss_pred             hcccCcccc------------ccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhc--c
Confidence            654321100            01123456788898888889999999999999999999999986533221111100  0


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      . .     .+.  ...+......+.+++.+||+.+|++|||+.||+.
T Consensus       214 ~-~-----~~~--~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         214 K-P-----PPT--LSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             C-C-----CCC--CCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            0 0     000  0112223345889999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=3.2e-35  Score=304.83  Aligned_cols=252  Identities=20%  Similarity=0.254  Sum_probs=182.6

Q ss_pred             cccCCCCeeEEEEEeCCC---cEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEE
Q 044236          447 FMGEGSRGKLYKGRLENG---TYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~~~g---~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      .||+|+||.||+|+..++   ..+++|.++... ....+.+.+|+.+++.++||||++++++|...        ...++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~--------~~~~lv   73 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEA--------IPYLLV   73 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCC--------CccEEE
Confidence            589999999999975333   345667665432 33457889999999999999999999998763        368999


Q ss_pred             EeccCCCCcccccccCCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc
Q 044236          523 YEYIPNGSYRAHLSENCP-ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       523 ~Ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      |||+++|+|.+++++... ....++.....++.||++||+|||+   .+|+||||||+|||++.++.+||+|||++....
T Consensus        74 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~  150 (268)
T cd05086          74 FEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHK---HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRY  150 (268)
T ss_pred             EecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCeeccCCccceEEEcCCccEEecccccccccC
Confidence            999999999999875321 2346677788999999999999998   789999999999999999999999999985432


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeec-------cCCCcCCceeehhHHHHHHhhC-CCCCCCChh-hhHHH
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-------QRTKLEDDVYNFGFILLESLVG-PIVTGKGEA-FLLNE  672 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~-~~~~~  672 (747)
                      ........    .      ...++..|++||++..       ..++.++|||||||++|||+++ ..|+..... .....
T Consensus       151 ~~~~~~~~----~------~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~  220 (268)
T cd05086         151 KEDYIETE----D------DKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNH  220 (268)
T ss_pred             cchhhhcc----c------CCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            11110000    0      0123445777887642       2457899999999999999985 667754332 22222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      +..    .......++.+...+++    .+.+++..|| .+|++||+++||++.|.
T Consensus       221 ~~~----~~~~~~~~~~~~~~~~~----~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         221 VIK----DQQVKLFKPQLELPYSE----RWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             HHh----hcccccCCCccCCCCcH----HHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            211    11223344444333333    4777888999 67999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=9e-36  Score=313.76  Aligned_cols=249  Identities=18%  Similarity=0.319  Sum_probs=196.3

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .+|.+.+.||+|+||.||+|+ ..+++.||+|.+........+.+.+|+.+++.++||||++++++|...        ..
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--------~~   90 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG--------DE   90 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC--------CE
Confidence            678889999999999999999 467999999999765555557788999999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++++|.+++.+    ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++.
T Consensus        91 ~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~l~~~L~~LH~---~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~  163 (297)
T cd06656          91 LWVVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALDFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (297)
T ss_pred             EEEeecccCCCCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEECcCccce
Confidence            8999999999999998864    347899999999999999999999   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ..........            ...++..|.+||......++.++|||||||++||+++|+.||...+....  ......
T Consensus       164 ~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~--~~~~~~  229 (297)
T cd06656         164 QITPEQSKRS------------TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA--LYLIAT  229 (297)
T ss_pred             EccCCccCcC------------cccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchh--eeeecc
Confidence            5432211100            11234567888888888889999999999999999999999865432111  000000


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      . .....       ..+......+.+++.+||..+|++||++.++++
T Consensus       230 ~-~~~~~-------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         230 N-GTPEL-------QNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             C-CCCCC-------CCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0 00000       012223344788999999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.3e-35  Score=304.14  Aligned_cols=237  Identities=24%  Similarity=0.350  Sum_probs=182.7

Q ss_pred             ccccCCCCeeEEEEEeCC-C----------cEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          446 SFMGEGSRGKLYKGRLEN-G----------TYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~-g----------~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      +.||+|+||.||+|...+ +          ..|++|.+...... ...+.+|+.++++++||||++++++|.. .     
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~-----   73 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-D-----   73 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-C-----
Confidence            368999999999999643 3          25778877644333 6788999999999999999999999875 2     


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-------
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-------  587 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-------  587 (747)
                         ..++||||+++|+|.+++...  ...+++..++.++.|++.||+|||+   .+|+||||||+||+++.++       
T Consensus        74 ---~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dlkp~Nill~~~~~~~~~~~  145 (259)
T cd05037          74 ---ENIMVEEYVKFGPLDVFLHRE--KNNVSLHWKLDVAKQLASALHYLED---KKLVHGNVCGKNILVARYGLNEGYVP  145 (259)
T ss_pred             ---CcEEEEEcCCCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHhh---CCeecccCccceEEEecCccccCCce
Confidence               468999999999999998764  2268999999999999999999998   8999999999999999888       


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc--CCCcCCceeehhHHHHHHhhC-CCCCCC
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ--RTKLEDDVYNFGFILLESLVG-PIVTGK  664 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~s~k~DVwSfGvvl~Elltg-~~p~~~  664 (747)
                      .+||+|||+++.......                ..+..+|.+||.+...  .++.++|||||||++|||++| ..|+..
T Consensus       146 ~~kl~Dfg~a~~~~~~~~----------------~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~  209 (259)
T cd05037         146 FIKLSDPGIPITVLSREE----------------RVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLST  209 (259)
T ss_pred             eEEeCCCCcccccccccc----------------cccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCccc
Confidence            799999999875432110                1123457788887766  788999999999999999995 777654


Q ss_pred             ChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          665 GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ...........   ..  .....+         ....+.+++.+||+.+|.+|||+.||++.|
T Consensus       210 ~~~~~~~~~~~---~~--~~~~~~---------~~~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         210 LSSSEKERFYQ---DQ--HRLPMP---------DCAELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             CCchhHHHHHh---cC--CCCCCC---------CchHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            32211111111   00  000011         014588999999999999999999999887

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.2e-35  Score=309.61  Aligned_cols=247  Identities=20%  Similarity=0.341  Sum_probs=193.6

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      |+..+.||+|+||.||+|.. .+++.||+|.++... ....+.+.+|++++++++||||+++++++...        +..
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~~   77 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKG--------TKL   77 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccC--------Cce
Confidence            55667899999999999984 568899999987432 33456788999999999999999999988763        478


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++++|.+++..    ..+++..+..++.|+++|+.|||+   .+++|+||+|+||+++.++.+|++|||+++.
T Consensus        78 ~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06642          78 WIIMEYLGGGSALDLLKP----GPLEETYIATILREILKGLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAGQ  150 (277)
T ss_pred             EEEEEccCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHhc---CCeeccCCChheEEEeCCCCEEEcccccccc
Confidence            999999999999998863    358899999999999999999998   8899999999999999999999999999876


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      .........            ...+...|++||.+....++.++|||||||++|||+||+.|+.............   .
T Consensus       151 ~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~---~  215 (277)
T cd06642         151 LTDTQIKRN------------TFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIP---K  215 (277)
T ss_pred             ccCcchhhh------------cccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhh---c
Confidence            543221100            1123456788898888888999999999999999999999986433222111110   0


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .     ..+.+    .......+.+++.+||+.+|++||+|.+|+++-
T Consensus       216 ~-----~~~~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  254 (277)
T cd06642         216 N-----SPPTL----EGQYSKPFKEFVEACLNKDPRFRPTAKELLKHK  254 (277)
T ss_pred             C-----CCCCC----CcccCHHHHHHHHHHccCCcccCcCHHHHHHhH
Confidence            0     01111    122334588999999999999999999999753

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=1.3e-35  Score=310.79  Aligned_cols=269  Identities=18%  Similarity=0.259  Sum_probs=200.8

Q ss_pred             cCHHHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeec
Q 044236          430 FYLEELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIE  507 (747)
Q Consensus       430 ~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~  507 (747)
                      +.++.+..++++|++.+.||+|+||.||+|+. .+++.+|+|.++... .....+.+|+.+++++ +||||++++++|..
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            44566677889999999999999999999985 568899999876432 2235678899999999 69999999998865


Q ss_pred             cCCCCCCCCceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC
Q 044236          508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH  586 (747)
Q Consensus       508 ~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~  586 (747)
                      ..   .......++||||+++|+|.++++.. .....+++..+..++.|+++||.|||+   .+|+||||||+||+++.+
T Consensus        87 ~~---~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~  160 (286)
T cd06638          87 KD---VKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHV---NKTIHRDVKGNNILLTTE  160 (286)
T ss_pred             cc---cCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHh---CCccccCCCHHhEEECCC
Confidence            32   11235789999999999999887532 123468899999999999999999999   789999999999999999


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----cCCCcCCceeehhHHHHHHhhCCCC
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----QRTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                      +.+||+|||+++.+.......            ....++..|++||.+..     ..++.++|||||||++|||++|+.|
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p  228 (286)
T cd06638         161 GGVKLVDFGVSAQLTSTRLRR------------NTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPP  228 (286)
T ss_pred             CCEEEccCCceeecccCCCcc------------ccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCC
Confidence            999999999987653221100            01124456788887642     4478899999999999999999998


Q ss_pred             CCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      +......  .......... .....++       ......+.+++.+||+.||++|||+.||++..
T Consensus       229 ~~~~~~~--~~~~~~~~~~-~~~~~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         229 LADLHPM--RALFKIPRNP-PPTLHQP-------ELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             CCCCchh--HHHhhccccC-CCcccCC-------CCcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence            8654321  1111111100 0011111       11223488999999999999999999998754

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=1.6e-35  Score=307.00  Aligned_cols=252  Identities=17%  Similarity=0.235  Sum_probs=192.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ++|.+.+.||+|+||.||+|+. .+++.||+|.++.........+.+|+.+++.++||||+++++++...        ..
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~--------~~   80 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRR--------DK   80 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeC--------CE
Confidence            4677788999999999999984 56899999998765545556788999999999999999999988763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++...   ..+++.+...++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++.
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd06645          81 LWICMEFCGGGSLQDIYHVT---GPLSESQIAYVSRETLQGLYYLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSA  154 (267)
T ss_pred             EEEEEeccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECcceeee
Confidence            89999999999999988653   458999999999999999999999   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      .........            ....++..|++||.+.   ...++.++|||||||++|||++|..|+.............
T Consensus       155 ~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~  222 (267)
T cd06645         155 QITATIAKR------------KSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMT  222 (267)
T ss_pred             EccCccccc------------ccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhh
Confidence            543211100            0123455678888764   4458889999999999999999988875433211111110


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .  ..    ...+....  .......+.+++.+||+.+|++||++.+|++
T Consensus       223 ~--~~----~~~~~~~~--~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         223 K--SN----FQPPKLKD--KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             c--cC----CCCCcccc--cCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence            0  00    00011000  0012234788999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.5e-35  Score=311.20  Aligned_cols=267  Identities=20%  Similarity=0.255  Sum_probs=201.2

Q ss_pred             cCHHHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeec
Q 044236          430 FYLEELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIE  507 (747)
Q Consensus       430 ~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~  507 (747)
                      ++++++..++++|.+.+.||+|+||.||+|.. .+++.+|+|.+.... .....+.+|+.+++++ +||||++++++|..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            45566777889999999999999999999985 568999999986432 2345678899999999 89999999999876


Q ss_pred             cCCCCCCCCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC
Q 044236          508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH  586 (747)
Q Consensus       508 ~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~  586 (747)
                      .+   .......++||||+++|+|.++++... ....+++..+..++.|++.||+|||+   .+|+||||||+||+++.+
T Consensus        91 ~~---~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~nili~~~  164 (291)
T cd06639          91 AD---KLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHN---NRIIHRDVKGNNILLTTE  164 (291)
T ss_pred             cc---ccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCC
Confidence            32   112346899999999999999886421 23468999999999999999999998   799999999999999999


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-----CCCcCCceeehhHHHHHHhhCCCC
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-----RTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                      +.+||+|||+++.........            ....++..|++||.+...     .++.++|||||||++|||++|+.|
T Consensus       165 ~~~kl~dfg~~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p  232 (291)
T cd06639         165 GGVKLVDFGVSAQLTSTRLRR------------NTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPP  232 (291)
T ss_pred             CCEEEeecccchhcccccccc------------cCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCC
Confidence            999999999987543221110            011234567788876543     368899999999999999999999


Q ss_pred             CCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          662 TGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       662 ~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +..... ..+..+..   . ....+.+       +.+....+.+++.+||+.+|++||++.|++..
T Consensus       233 ~~~~~~~~~~~~~~~---~-~~~~~~~-------~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         233 LFDMHPVKTLFKIPR---N-PPPTLLH-------PEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             CCCCcHHHHHHHHhc---C-CCCCCCc-------ccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            865432 11211111   0 0001111       12233458899999999999999999999863

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=3.8e-35  Score=303.97  Aligned_cols=253  Identities=22%  Similarity=0.297  Sum_probs=192.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|+..+.||+|+||.||+|.. .++..||+|++....     ......+.+|+.++++++||||+++++++....    
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----   77 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRA----   77 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCC----
Confidence            3688899999999999999985 568999999886432     223456888999999999999999999876522    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....+++|||+++++|.+++...   ..+++.....++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        78 --~~~~~l~~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~LH~---~~i~H~~l~p~nil~~~~~~~~l~d  149 (266)
T cd06651          78 --EKTLTIFMEYMPGGSVKDQLKAY---GALTESVTRKYTRQILEGMSYLHS---NMIVHRDIKGANILRDSAGNVKLGD  149 (266)
T ss_pred             --CCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEcc
Confidence              34789999999999999998753   358899999999999999999998   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++.+........         ......++..|.+||.+....++.++|||||||++|||++|+.|+...+...  .+
T Consensus       150 fg~~~~~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~--~~  218 (266)
T cd06651         150 FGASKRLQTICMSGT---------GIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMA--AI  218 (266)
T ss_pred             CCCccccccccccCC---------ccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHH--HH
Confidence            999875432111000         0011224556888998888888999999999999999999999987543221  11


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .......     ..+.+    +......+.+++ +||..+|++||+|+||++
T Consensus       219 ~~~~~~~-----~~~~~----~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         219 FKIATQP-----TNPQL----PSHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             HHHhcCC-----CCCCC----chhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            1111110     11111    222233356666 688899999999999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-36  Score=304.98  Aligned_cols=247  Identities=18%  Similarity=0.239  Sum_probs=202.3

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      +-|+..+.||+|.|+.|-+|+ .-+|+.||||++...+  ......+.+|++.|+-++|||||+||.+.-.        .
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDT--------Q   89 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDT--------Q   89 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcc--------c
Confidence            346667889999999999998 4579999999998644  3344678889999999999999999988754        3


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec-CCCcEEEeccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD-EHRIAKLSDYG  595 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFG  595 (747)
                      ..+|||+|+-.+|+|++||-++  ...+.+....+++.||..|+.|+|+   ..+|||||||+||.+- .-|-+|+.|||
T Consensus        90 TKlyLiLELGD~GDl~DyImKH--e~Gl~E~La~kYF~QI~~AI~YCHq---LHVVHRDLKPENVVFFEKlGlVKLTDFG  164 (864)
T KOG4717|consen   90 TKLYLILELGDGGDLFDYIMKH--EEGLNEDLAKKYFAQIVHAISYCHQ---LHVVHRDLKPENVVFFEKLGLVKLTDFG  164 (864)
T ss_pred             ceEEEEEEecCCchHHHHHHhh--hccccHHHHHHHHHHHHHHHHHHhh---hhhhcccCCcceeEEeeecCceEeeecc
Confidence            4899999999999999999876  4568999999999999999999999   7889999999998874 56899999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCC-cCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTK-LEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s-~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~  673 (747)
                      ++-.........             ..||..+|.|||++.+..|+ +++||||+|||||.|+.|++||.... .+.+..+
T Consensus       165 FSNkf~PG~kL~-------------TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmI  231 (864)
T KOG4717|consen  165 FSNKFQPGKKLT-------------TSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMI  231 (864)
T ss_pred             ccccCCCcchhh-------------cccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhh
Confidence            986555443322             25788899999999999887 67899999999999999999997543 2333222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...              .-..|...+.++.+|+..|+..||.+|.+.+||+..
T Consensus       232 mDC--------------KYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  232 MDC--------------KYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             hcc--------------cccCchhhhHHHHHHHHHHHhcCchhhccHHHHhcc
Confidence            111              012355667779999999999999999999999753

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-35  Score=318.04  Aligned_cols=240  Identities=19%  Similarity=0.222  Sum_probs=181.1

Q ss_pred             ccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcC---CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          448 MGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKL---QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       448 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l---~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      ||+|+||+||+|+. .+++.||||++....   ......+..|..++.+.   +||||+++++++...        ...+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~--------~~~~   72 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTD--------SDLY   72 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecC--------CeEE
Confidence            69999999999984 568999999986432   22234455677777665   699999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|..++..   ...+++..+..++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~qil~al~~LH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~  146 (330)
T cd05586          73 LVTDYMSGGELFWHLQK---EGRFSEDRAKFYIAELVLALEHLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKAN  146 (330)
T ss_pred             EEEcCCCCChHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEecCCcCcCC
Confidence            99999999999988875   3458899999999999999999999   89999999999999999999999999998643


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      .......            ...+++..|++||.+... .++.++|||||||++|||+||+.||................ 
T Consensus       147 ~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~-  213 (330)
T cd05586         147 LTDNKTT------------NTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGK-  213 (330)
T ss_pred             CCCCCCc------------cCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCC-
Confidence            2211100            113456788999987654 47899999999999999999999987654333222111111 


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC----CHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP----SFEDVLW  725 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP----s~~evl~  725 (747)
                         .....    ...    ...+.+++.+||+.||.+||    ++.++++
T Consensus       214 ---~~~~~----~~~----~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         214 ---VRFPK----NVL----SDEGRQFVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             ---CCCCC----ccC----CHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc
Confidence               01111    112    23478899999999999998    5666654

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-35  Score=301.97  Aligned_cols=252  Identities=19%  Similarity=0.305  Sum_probs=197.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ++|+..+.||+|+||.||+|.. .+++.+|+|.+........+.+.+|++++++++||||+++++++...        ..
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--------~~   74 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRR--------DK   74 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeC--------CE
Confidence            5788899999999999999985 56889999999866555667899999999999999999999988763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .+++|||+++++|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++.
T Consensus        75 ~~l~~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~  149 (262)
T cd06613          75 LWIVMEYCGGGSLQDIYQVT--RGPLSELQIAYVCRETLKGLAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSA  149 (262)
T ss_pred             EEEEEeCCCCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHh---CCceecCCChhhEEECCCCCEEECccccch
Confidence            89999999999999988753  2468899999999999999999998   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeecc---CCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHH
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ---RTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMA  674 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~  674 (747)
                      ..........            ...++..|.+||.....   .++.++|||||||++|||+||+.|+....... .....
T Consensus       150 ~~~~~~~~~~------------~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~  217 (262)
T cd06613         150 QLTATIAKRK------------SFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLIS  217 (262)
T ss_pred             hhhhhhhccc------------cccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            5433211100            01234467788887666   78899999999999999999999986543221 11111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ...       . .+.. ..........+.+++.+||..+|.+|||+.+|+.
T Consensus       218 ~~~-------~-~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         218 KSN-------F-PPPK-LKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             hcc-------C-CCcc-ccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            100       0 0000 0112233456889999999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=5.4e-35  Score=302.61  Aligned_cols=255  Identities=19%  Similarity=0.327  Sum_probs=195.0

Q ss_pred             CCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      +|...+.||+|+||.||+|...+|+.+|||.++...      ......+.+|++++++++|+||++++++|...      
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~------   74 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDD------   74 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecC------
Confidence            477788999999999999998789999999886432      22335688999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+|+||||+||+++.++.+||+||
T Consensus        75 --~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~df  146 (265)
T cd06631          75 --NTISIFMEFVPGGSISSILNRF---GPLPEPVFCKYTKQILDGVAYLHN---NCVVHRDIKGNNVMLMPNGIIKLIDF  146 (265)
T ss_pred             --CeEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHhEEECCCCeEEeccc
Confidence              4789999999999999999753   357899999999999999999998   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++............   .   ......++..|.+||......++.++|||||||++|||++|+.||...+...  ...
T Consensus       147 g~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~--~~~  218 (265)
T cd06631         147 GCARRLAWVGLHGTHS---N---MLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLA--AMF  218 (265)
T ss_pred             hhhHhhhhcccccccc---c---cccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHH--HHH
Confidence            9986543211100000   0   0011234567888998888888999999999999999999999986533221  111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .......    ..+.....+    ...+.+++.+||+.+|.+||++.|++.
T Consensus       219 ~~~~~~~----~~~~~~~~~----~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         219 YIGAHRG----LMPRLPDSF----SAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             HhhhccC----CCCCCCCCC----CHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            1111000    111122222    334788999999999999999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=6.6e-35  Score=300.88  Aligned_cols=250  Identities=25%  Similarity=0.342  Sum_probs=195.6

Q ss_pred             ccccCCCCeeEEEEEeCC----CcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRLEN----GTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|....    +..||||.++..... ..+.+.+|+++++.++|+||+++++++...        ...+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--------~~~~   72 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEE--------EPLY   72 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCC--------CceE
Confidence            468999999999998543    789999999754332 367889999999999999999999998763        4789


Q ss_pred             EEEeccCCCCcccccccCCC------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          521 LVYEYIPNGSYRAHLSENCP------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      +||||+++|+|.+++.....      ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        73 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~nili~~~~~~~l~df  149 (262)
T cd00192          73 LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDF  149 (262)
T ss_pred             EEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHc---CCcccCccCcceEEECCCCcEEEccc
Confidence            99999999999999976421      2568999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |.++...........          .....+..|++||......++.++||||+||++|||++ |..|+...........
T Consensus       150 g~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~  219 (262)
T cd00192         150 GLSRDVYDDDYYRKK----------TGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEY  219 (262)
T ss_pred             ccccccccccccccc----------cCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence            999766543211100          00123446788888887789999999999999999999 5888876543332222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ...   ..  .   .    ..+...+..+.+++.+||..+|++|||+.|+++.|+
T Consensus       220 ~~~---~~--~---~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         220 LRK---GY--R---L----PKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             HHc---CC--C---C----CCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            211   10  0   0    111222345889999999999999999999998873

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=317.32  Aligned_cols=249  Identities=21%  Similarity=0.306  Sum_probs=198.4

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      |.++..||.|+||+||+|+. .++-..|.|++........+++..||+||...+||+||+|++.|+..        +.++
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~e--------nkLw  105 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFE--------NKLW  105 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhcc--------CceE
Confidence            45667799999999999984 45677788999888888899999999999999999999999988773        4799


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      |..|||.||-.+..+-.-  ..+|+..++..+++|++.||.|||+   ..|||||||+.|||+.-+|.++++|||++...
T Consensus       106 iliEFC~GGAVDaimlEL--~r~LtE~QIqvvc~q~ldALn~LHs---~~iIHRDLKAGNiL~TldGdirLADFGVSAKn  180 (1187)
T KOG0579|consen  106 ILIEFCGGGAVDAIMLEL--GRVLTEDQIQVVCYQVLDALNWLHS---QNIIHRDLKAGNILLTLDGDIRLADFGVSAKN  180 (1187)
T ss_pred             EEEeecCCchHhHHHHHh--ccccchHHHHHHHHHHHHHHHHHhh---cchhhhhccccceEEEecCcEeeecccccccc
Confidence            999999999998877653  5579999999999999999999999   88999999999999999999999999997432


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      ........            .+.|+++|||||+..     ...|++++||||||+.|.||+-+.+|...-...-+  +..
T Consensus       181 ~~t~qkRD------------sFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRV--llK  246 (1187)
T KOG0579|consen  181 KSTRQKRD------------SFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV--LLK  246 (1187)
T ss_pred             hhHHhhhc------------cccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHH--HHH
Confidence            21111000            145678889998775     45799999999999999999999988764332211  111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      +...+      .|.+.  -|..+...+.+++.+|+..||..||++.++++
T Consensus       247 iaKSe------PPTLl--qPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  247 IAKSE------PPTLL--QPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             HhhcC------CCccc--CcchhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence            11111      12221  14456667999999999999999999999975

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.9e-35  Score=320.64  Aligned_cols=265  Identities=17%  Similarity=0.176  Sum_probs=195.0

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|.+.+.||+|+||.||+|.. ..++.||||++...  .....+.+.+|+.+++.++||||+++++++.....  ..
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~--~~   99 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKS--LE   99 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccc--cc
Confidence            357899999999999999999984 56889999998743  23344677889999999999999999998764321  11


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++||||+++ +|.+++..     .+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus       100 ~~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Df  170 (364)
T cd07875         100 EFQDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF  170 (364)
T ss_pred             ccCeEEEEEeCCCC-CHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEECCCCcEEEEeC
Confidence            13468999999975 67776643     37888999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      |+++........             ....++..|+|||++....++.++|||||||++|||++|+.||...+. .....+
T Consensus       171 G~a~~~~~~~~~-------------~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~  237 (364)
T cd07875         171 GLARTAGTSFMM-------------TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKV  237 (364)
T ss_pred             CCccccCCCCcc-------------cCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            999754322110             012345678999999888999999999999999999999999875432 111111


Q ss_pred             HhccCcC--------------------Ccc-----ccccccc---cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQD--------------------GRR-----RIVDPVV---LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~--------------------~~~-----~~~d~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .......                    ...     .......   ...........+.+++.+|++.||.+|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~  317 (364)
T cd07875         238 IEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  317 (364)
T ss_pred             HHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            1110000                    000     0000000   00011112345889999999999999999999987


Q ss_pred             H
Q 044236          726 N  726 (747)
Q Consensus       726 ~  726 (747)
                      +
T Consensus       318 h  318 (364)
T cd07875         318 H  318 (364)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=4.7e-35  Score=301.52  Aligned_cols=251  Identities=18%  Similarity=0.262  Sum_probs=195.9

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+++. .+++.||+|++....  ....+.+.+|++++++++|+||+++++.+...       ..
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-------~~   73 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGE-------DG   73 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCC-------CC
Confidence            478889999999999999984 458899999987432  33456788999999999999999999876532       23


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.+++.... ...+++.++..++.|++.|++|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~~~~l~~~l~~~~-~~~l~~~~~~~~~~~l~~~l~~lH~---~~i~H~di~p~nil~~~~~~~~l~df~~~  149 (257)
T cd08223          74 LLYIVMGFCEGGDLYHKLKEQK-GKLLPENQVVEWFVQIAMALQYLHE---KHILHRDLKTQNVFLTRTNIIKVGDLGIA  149 (257)
T ss_pred             EEEEEecccCCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCchhEEEecCCcEEEecccce
Confidence            6799999999999999987532 3458999999999999999999999   88999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      +.........            ....++..|++||......++.++|||||||++|||++|+.|+...+.......... 
T Consensus       150 ~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~-  216 (257)
T cd08223         150 RVLENQCDMA------------STLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIE-  216 (257)
T ss_pred             EEecccCCcc------------ccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHh-
Confidence            7653321110            012345568899998888899999999999999999999998875443222111110 


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                        ...     +.    .+......+.+++.+||+.+|++|||+.+++++
T Consensus       217 --~~~-----~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         217 --GKL-----PP----MPKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             --cCC-----CC----CccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence              000     11    122333458899999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=3.6e-35  Score=312.41  Aligned_cols=199  Identities=19%  Similarity=0.241  Sum_probs=156.2

Q ss_pred             cccccCCCCeeEEEEEeC---CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          445 LSFMGEGSRGKLYKGRLE---NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      ...||+|+||.||+|+..   +++.||+|.+....  ....+.+|++++++++||||+++++++....      ....++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------~~~~~l   77 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHA------DRKVWL   77 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCC------CcEEEE
Confidence            357999999999999853   46889999986432  2345778999999999999999999886532      347899


Q ss_pred             EEeccCCCCcccccccCC------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee----cCCCcEEE
Q 044236          522 VYEYIPNGSYRAHLSENC------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL----DEHRIAKL  591 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl  591 (747)
                      ||||+.+ +|.+++....      ....+++..+..++.|++.||+|||+   .+|+||||||+|||+    +.++.+||
T Consensus        78 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivHrDlkp~Nil~~~~~~~~~~~kl  153 (317)
T cd07868          78 LFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKI  153 (317)
T ss_pred             EEeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEecCCCCcCcEEE
Confidence            9999965 8877764321      12358889999999999999999999   889999999999999    45679999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      +|||+++..........         ......++..|+|||++.. ..++.++||||+||++|||++|++||..
T Consensus       154 ~DfG~a~~~~~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         154 ADMGFARLFNSPLKPLA---------DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             eecCceeccCCCCcccc---------ccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            99999976543211100         0011245667899998865 4589999999999999999999998863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=4e-35  Score=305.33  Aligned_cols=256  Identities=21%  Similarity=0.310  Sum_probs=194.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ++|++.+.||+|+||.||+|+.+      +.+.||+|.+...... ..+.+.+|++++++++|+||+++++++...    
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~----   80 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREA----   80 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCC----
Confidence            56888999999999999999853      2467999988754433 456789999999999999999999998763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCC------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPE------NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH  586 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~  586 (747)
                          ...++||||+++|+|.+++......      ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.+
T Consensus        81 ----~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dlkp~Nili~~~  153 (275)
T cd05046          81 ----EPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSN---ARFVHRDLAARNCLVSSQ  153 (275)
T ss_pred             ----CcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhh---cCcccCcCccceEEEeCC
Confidence                3679999999999999998754311      258999999999999999999998   789999999999999999


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCC
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKG  665 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~  665 (747)
                      +.+|++|||+++..........           .....+..|++||.+....++.++|||||||++|||++ |..|+...
T Consensus       154 ~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~  222 (275)
T cd05046         154 REVKVSLLSLSKDVYNSEYYKL-----------RNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGL  222 (275)
T ss_pred             CcEEEcccccccccCccccccc-----------CCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            9999999999864322111000           00122345778888777778899999999999999999 67787543


Q ss_pred             hhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      .............   . ...   ....++    ..+.+++.+||+.+|.+|||+.|++.+|.
T Consensus       223 ~~~~~~~~~~~~~---~-~~~---~~~~~~----~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         223 SDEEVLNRLQAGK---L-ELP---VPEGCP----SRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             chHHHHHHHHcCC---c-CCC---CCCCCC----HHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            2222111111000   0 000   111223    34889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=6e-35  Score=299.67  Aligned_cols=248  Identities=24%  Similarity=0.382  Sum_probs=192.0

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEe
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYE  524 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~E  524 (747)
                      ++||+|+||.||+|...+++.||+|.++.... .....+.+|++++++++|+||+++++++...        ...++|||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~~~~~v~e   72 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQK--------QPIYIVME   72 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC--------CCeEEEEE
Confidence            36899999999999976699999999875433 2456789999999999999999999998763        36899999


Q ss_pred             ccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccc
Q 044236          525 YIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE  604 (747)
Q Consensus       525 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~  604 (747)
                      |+++++|.+++...  ...+++..+..++.+++.|++|||+   .+++||||||+||+++.++.+||+|||+++......
T Consensus        73 ~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~  147 (251)
T cd05041          73 LVPGGSLLTFLRKK--KNRLTVKKLLQMSLDAAAGMEYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGI  147 (251)
T ss_pred             cCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCEehhhcCcceEEEcCCCcEEEeeccccccccCCc
Confidence            99999999998653  3358899999999999999999998   789999999999999999999999999987543211


Q ss_pred             hhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      ......     .     ......|.+||.+....++.++|||||||++|||+| |..|+................     
T Consensus       148 ~~~~~~-----~-----~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~-----  212 (251)
T cd05041         148 YTVSDG-----L-----KQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGY-----  212 (251)
T ss_pred             ceeccc-----c-----CcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCC-----
Confidence            110000     0     011234778888877889999999999999999999 788876543322222211100     


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      .   .    ..+...+..+.+++.+||..+|.+|||+.|+++.|+
T Consensus       213 ~---~----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         213 R---M----PAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             C---C----CCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence            0   0    011223345899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-35  Score=304.61  Aligned_cols=249  Identities=21%  Similarity=0.308  Sum_probs=195.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|+..+.||.|+||.||+|+. .+++.||+|.+.... ......+.+|++++++++|+||+++++++...        .
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~   72 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKG--------S   72 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEEC--------C
Confidence            3577888999999999999995 468999999987543 33456788999999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++|+||+++++|.+++...    .+++..+..++.|++.|+.|||+   .+++||||+|+||+++.++.++|+|||++
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~  145 (274)
T cd06609          73 KLWIIMEYCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHE---EGKIHRDIKAANILLSEEGDVKLADFGVS  145 (274)
T ss_pred             eEEEEEEeeCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEcccccc
Confidence            789999999999999998752    68999999999999999999999   78999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      +.........            ....++..|++||.+....++.++|||||||++|||+||+.|+...............
T Consensus       146 ~~~~~~~~~~------------~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~  213 (274)
T cd06609         146 GQLTSTMSKR------------NTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKN  213 (274)
T ss_pred             eeeccccccc------------ccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhc
Confidence            7664321100            0122345678899888888999999999999999999999998654322211111100


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                              ..+.+...   .....+.+++.+||..+|++|||+++++++
T Consensus       214 --------~~~~~~~~---~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         214 --------NPPSLEGN---KFSKPFKDFVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             --------CCCCCccc---ccCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence                    01111111   023347889999999999999999999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=4.7e-35  Score=302.61  Aligned_cols=256  Identities=18%  Similarity=0.255  Sum_probs=199.1

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||.|+||.||++. ..+++.||+|.+...  .....+.+..|++++++++||||+++++++....      ..
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~------~~   74 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRS------NQ   74 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCC------CC
Confidence            47788999999999999998 457899999998743  2334567888999999999999999999876532      34


Q ss_pred             eEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCCCCceeecCCCcEEEecc
Q 044236          518 KVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSV--ISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      ..+++|||+++++|.+++... .....+++..++.++.|++.||+|||..+  ..+|+||||||+||+++.++.+||+||
T Consensus        75 ~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~  154 (265)
T cd08217          75 TLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDF  154 (265)
T ss_pred             EEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecc
Confidence            689999999999999998653 22456899999999999999999999321  278999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++..........            ...++..+++||.+....++.++|||||||++|||++|+.|+...+........
T Consensus       155 g~~~~~~~~~~~~~------------~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~  222 (265)
T cd08217         155 GLAKILGHDSSFAK------------TYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKI  222 (265)
T ss_pred             cccccccCCccccc------------ccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHH
Confidence            99876543221000            113455688889888888899999999999999999999998765433222221


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...   .     .+    ..+......+.+++.+|++.+|++||++.+|+++
T Consensus       223 ~~~---~-----~~----~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         223 KEG---K-----FR----RIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             hcC---C-----CC----CCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            111   0     01    1122334458899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.7e-35  Score=318.39  Aligned_cols=265  Identities=16%  Similarity=0.228  Sum_probs=193.9

Q ss_pred             HHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ...++|++.+.||+|+||.||+|. ..+++.||||++....  ....+.+.+|++++++++||||+++++++.....  .
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~   89 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATS--I   89 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccc--c
Confidence            345789999999999999999998 4678899999987432  2334567789999999999999999998864321  1


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                      ......+++||++ +++|.+++..    ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|
T Consensus        90 ~~~~~~~~~~~~~-~~~l~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrdikp~Nil~~~~~~~kl~D  161 (343)
T cd07878          90 ENFNEVYLVTNLM-GADLNNIVKC----QKLSDEHVQFLIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILD  161 (343)
T ss_pred             cccCcEEEEeecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecccCChhhEEECCCCCEEEcC
Confidence            1134679999998 7789887753    358999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLN  671 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~  671 (747)
                      ||+++.......               ...++..|++||++.. ..++.++|||||||++|||++|+.||...+. ..+.
T Consensus       162 fg~~~~~~~~~~---------------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~  226 (343)
T cd07878         162 FGLARQADDEMT---------------GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLK  226 (343)
T ss_pred             CccceecCCCcC---------------CccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            999975432110               1234567889998765 5688999999999999999999998865432 1222


Q ss_pred             HHHhccCcCC-----------cccccc--ccccC----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDG-----------RRRIVD--PVVLT----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~-----------~~~~~d--~~~~~----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+........           ......  +....    .........+.+++.+|++.||.+|||+.|++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         227 RIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            2211110000           000000  00000    0000112347899999999999999999999965

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=3.6e-35  Score=301.98  Aligned_cols=246  Identities=23%  Similarity=0.358  Sum_probs=192.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||.||+|.. .++.||+|.++...  ..+.+.+|+.++++++||||+++++++...         ..
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~---------~~   73 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHN---------GL   73 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC---------Cc
Confidence            4588889999999999999985 57789999986432  346788999999999999999999988642         36


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++.... ...+++..+..++.|++.|+.|||+   .+++||||||+||+++.++.+||+|||+++.
T Consensus        74 ~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~al~~lH~---~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~  149 (254)
T cd05083          74 YIVMELMSKGNLVNFLRTRG-RALVSVIQLLQFSLDVAEGMEYLES---KKLVHRDLAARNILVSEDGVAKVSDFGLARV  149 (254)
T ss_pred             EEEEECCCCCCHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCcEEECCCcccee
Confidence            89999999999999987542 3458899999999999999999998   8999999999999999999999999999865


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .......               ......|.+||.+....++.++|||||||++|||++ |+.|+............... 
T Consensus       150 ~~~~~~~---------------~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-  213 (254)
T cd05083         150 GSMGVDN---------------SKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKG-  213 (254)
T ss_pred             ccccCCC---------------CCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCC-
Confidence            3221100               011234677888777889999999999999999998 88888655433322222111 


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                        ..   .++  ...+    +..+.+++.+||+.+|++||++.+++..|+
T Consensus       214 --~~---~~~--~~~~----~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  252 (254)
T cd05083         214 --YR---MEP--PEGC----PADVYVLMTSCWETEPKKRPSFHKLREKLE  252 (254)
T ss_pred             --CC---CCC--CCcC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHc
Confidence              00   111  1122    334789999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=6.9e-35  Score=300.13  Aligned_cols=250  Identities=19%  Similarity=0.318  Sum_probs=197.1

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|+..+.||+|+||.||.++ ..+++.+|+|.+...  +....+.+.+|++++++++|+||+++++++.+.        .
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--------~   72 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDD--------N   72 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecC--------C
Confidence            47888999999999999998 566899999998643  334456788999999999999999999999763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++.... ...+++..+..++.|+++||+|||+   .+++||||||+||+++.++.+||+|||++
T Consensus        73 ~~~~~~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~ni~~~~~~~~kl~d~~~~  148 (256)
T cd08221          73 TLLIEMEYANGGTLYDKIVRQK-GQLFEEEMVLWYLFQIVSAVSYIHK---AGILHRDIKTLNIFLTKAGLIKLGDFGIS  148 (256)
T ss_pred             eEEEEEEecCCCcHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChHhEEEeCCCCEEECcCcce
Confidence            7899999999999999987532 3468999999999999999999998   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~  676 (747)
                      +.........            ....++..|.+||......++.++|||||||++|||++|..|+....... ...+.. 
T Consensus       149 ~~~~~~~~~~------------~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~-  215 (256)
T cd08221         149 KILGSEYSMA------------ETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQ-  215 (256)
T ss_pred             EEcccccccc------------cccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHc-
Confidence            7653322100            01234556788888877788999999999999999999998886543322 222211 


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                         ...    .+     .+......+.+++.+||..+|.+||++.|+++++
T Consensus       216 ---~~~----~~-----~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         216 ---GNY----TP-----VVSVYSSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             ---CCC----CC-----CccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence               100    00     0112233488899999999999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.5e-35  Score=320.08  Aligned_cols=191  Identities=16%  Similarity=0.243  Sum_probs=158.4

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ...+|.+.+.||+|+||.||+|+. .+++.||+|.....      ....|+.++++++|||||++++++...        
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~--------  129 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSG--------  129 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeC--------
Confidence            345799999999999999999995 45789999975421      235699999999999999999998863        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+. |+|.+++...  ...++|..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       130 ~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~  203 (357)
T PHA03209        130 AITCMVLPHYS-SDLYTYLTKR--SRPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGA  203 (357)
T ss_pred             CeeEEEEEccC-CcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEecCcc
Confidence            37899999995 5888888653  3468999999999999999999999   7899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCC
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                      ++........             ....++..|++||.+....++.++|||||||++|||+++..+
T Consensus       204 a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~  255 (357)
T PHA03209        204 AQFPVVAPAF-------------LGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPST  255 (357)
T ss_pred             ccccccCccc-------------ccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCc
Confidence            8643211110             112456678999999888999999999999999999997443

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=1.9e-35  Score=320.05  Aligned_cols=262  Identities=18%  Similarity=0.252  Sum_probs=193.5

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|+..+.||+|+||.||+++. .+++.||||+++...   ......+.+|+.++.+++||||+++++++...       
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~-------   73 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDK-------   73 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-------
Confidence            4688899999999999999985 568999999997432   23446778899999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~~L~~lH~---~givHrDLkp~NIli~~~~~vkL~DfG  146 (360)
T cd05627          74 -RNLYLIMEFLPGGDMMTLLMKK---DTLSEEATQFYIAETVLAIDAIHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFG  146 (360)
T ss_pred             -CEEEEEEeCCCCccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEeecc
Confidence             4789999999999999998753   458899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhccc---CCCC--------------------CcccccceeeecCCcceeeeeeccCCCcCCceeehhHHH
Q 044236          596 ISIIMEEHEKLEAK---GEGP--------------------KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL  652 (747)
Q Consensus       596 la~~~~~~~~~~~~---~~~~--------------------~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl  652 (747)
                      +++...........   ...+                    .........+++..|+|||++....++.++|||||||++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil  226 (360)
T cd05627         147 LCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIM  226 (360)
T ss_pred             CCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceecccccee
Confidence            98754321110000   0000                    000001123578889999999988999999999999999


Q ss_pred             HHHhhCCCCCCCChhhhH-HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC---HHHHHHH
Q 044236          653 LESLVGPIVTGKGEAFLL-NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS---FEDVLWN  726 (747)
Q Consensus       653 ~Elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~evl~~  726 (747)
                      |||+||+.||........ ..+...   ..... +.+.  ...+.    .+.+++.+++ .||.+|++   +.|++.+
T Consensus       227 yel~tG~~Pf~~~~~~~~~~~i~~~---~~~~~-~p~~--~~~s~----~~~~li~~l~-~~p~~R~~~~~~~ei~~h  293 (360)
T cd05627         227 YEMLIGYPPFCSETPQETYRKVMNW---KETLV-FPPE--VPISE----KAKDLILRFC-TDSENRIGSNGVEEIKSH  293 (360)
T ss_pred             eecccCCCCCCCCCHHHHHHHHHcC---CCcee-cCCC--CCCCH----HHHHHHHHhc-cChhhcCCCCCHHHHhcC
Confidence            999999999975443322 222111   00000 1110  11223    3666777655 49999985   6777653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1e-35  Score=332.88  Aligned_cols=265  Identities=16%  Similarity=0.210  Sum_probs=191.7

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCC------CCcceeeeee
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH------PHLVSLLGHC  505 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H------~nIv~l~g~~  505 (747)
                      +++...+++|++.+.||+|+||+||+|+. ..++.||||+++... ...+.+..|++++++++|      .+|+++++++
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            34445678899999999999999999984 568899999997432 223456678888777755      4588888887


Q ss_pred             eccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC
Q 044236          506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE  585 (747)
Q Consensus       506 ~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  585 (747)
                      ...       ....++|||++ +++|.+++.+.   ..+++..+..|+.||+.||+|||+.  .+||||||||+|||++.
T Consensus       201 ~~~-------~~~~~iv~~~~-g~~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~  267 (467)
T PTZ00284        201 QNE-------TGHMCIVMPKY-GPCLLDWIMKH---GPFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMET  267 (467)
T ss_pred             EcC-------CceEEEEEecc-CCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEec
Confidence            642       24789999998 67888888653   4589999999999999999999972  48999999999999987


Q ss_pred             CC----------------cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehh
Q 044236          586 HR----------------IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFG  649 (747)
Q Consensus       586 ~~----------------~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfG  649 (747)
                      ++                .+||+|||.+.......               ...+++..|+|||++....|+.++||||||
T Consensus       268 ~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~---------------~~~~gt~~Y~APE~~~~~~~~~~~DiwSlG  332 (467)
T PTZ00284        268 SDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSR---------------TAIVSTRHYRSPEVVLGLGWMYSTDMWSMG  332 (467)
T ss_pred             CCcccccccccccCCCCceEEECCCCccccCcccc---------------ccccCCccccCcHHhhcCCCCcHHHHHHHH
Confidence            65                49999999875322110               113567789999999988999999999999


Q ss_pred             HHHHHHhhCCCCCCCChh-hhHHHHHhccCc-----------C----------Ccccccccccc----CCC---CHHHHH
Q 044236          650 FILLESLVGPIVTGKGEA-FLLNEMASFGSQ-----------D----------GRRRIVDPVVL----TTC---SQESLS  700 (747)
Q Consensus       650 vvl~Elltg~~p~~~~~~-~~~~~~~~~~~~-----------~----------~~~~~~d~~~~----~~~---~~~~~~  700 (747)
                      |++|||++|+.||..... +.+..+......           .          ......++...    ...   ......
T Consensus       333 vil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (467)
T PTZ00284        333 CIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDD  412 (467)
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchH
Confidence            999999999999975432 222211111000           0          00000000000    000   001134


Q ss_pred             HHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          701 IVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       701 ~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+.+|+.+||+.||++|||+.|++++
T Consensus       413 ~~~dli~~mL~~dP~~R~ta~e~L~H  438 (467)
T PTZ00284        413 LLCDLIYGLLHYDRQKRLNARQMTTH  438 (467)
T ss_pred             HHHHHHHHhCCcChhhCCCHHHHhcC
Confidence            57799999999999999999999864

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=7.3e-35  Score=303.73  Aligned_cols=248  Identities=20%  Similarity=0.302  Sum_probs=196.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ..|+..+.||+|+||.||+|.. .+++.||||.+.... ......+.+|+.++++++||||+++++++...        .
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~   75 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKG--------T   75 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC--------C
Confidence            3467788899999999999985 468999999987433 34456788999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++..    ..+++.....++.|++.||+|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        76 ~~~lv~e~~~~~~L~~~i~~----~~l~~~~~~~~~~~l~~~l~~lh~---~~ivH~dl~p~Nil~~~~~~~~l~dfg~~  148 (277)
T cd06640          76 KLWIIMEYLGGGSALDLLRA----GPFDEFQIATMLKEILKGLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVA  148 (277)
T ss_pred             EEEEEEecCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCccCcCCChhhEEEcCCCCEEEcccccc
Confidence            79999999999999998864    358888999999999999999998   88999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      ..........            ....++..|.+||.+....++.++|||||||++|||+||+.|+.............. 
T Consensus       149 ~~~~~~~~~~------------~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~-  215 (277)
T cd06640         149 GQLTDTQIKR------------NTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPK-  215 (277)
T ss_pred             eeccCCcccc------------ccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhc-
Confidence            6553221100            001234457788888778889999999999999999999999865433221111100 


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                                 .............+.+++.+||+.+|++||++.+++..
T Consensus       216 -----------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         216 -----------NNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             -----------CCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence                       00112233445568899999999999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=8.2e-35  Score=301.59  Aligned_cols=252  Identities=21%  Similarity=0.323  Sum_probs=193.5

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch---------hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK---------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      |.+...||+|+||.||+|.. .+++.+|+|.+.....         ...+.+.+|++++++++||||+++++++...   
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---   78 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDA---   78 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeC---
Confidence            66778899999999999984 5688999998864321         1235688899999999999999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                           ...++||||+++++|.+++...   ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||
T Consensus        79 -----~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lH~---~~ivH~di~p~nil~~~~~~~~l  147 (267)
T cd06628          79 -----DHLNIFLEYVPGGSVAALLNNY---GAFEETLVRNFVRQILKGLNYLHN---RGIIHRDIKGANILVDNKGGIKI  147 (267)
T ss_pred             -----CccEEEEEecCCCCHHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHh---cCcccccCCHHHEEEcCCCCEEe
Confidence                 3789999999999999999753   458899999999999999999998   78999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      +|||+++............      .......++..|++||.+....++.++|||||||++|||++|+.||......  .
T Consensus       148 ~dfg~~~~~~~~~~~~~~~------~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~  219 (267)
T cd06628         148 SDFGISKKLEANSLSTKTN------GARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQL--Q  219 (267)
T ss_pred             cccCCCcccccccccCCcc------ccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHH--H
Confidence            9999997664321111000      0001123456788899888888899999999999999999999998754321  1


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .+.....      ...+....    .....+.+++.+||+.||.+||++.||++
T Consensus       220 ~~~~~~~------~~~~~~~~----~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         220 AIFKIGE------NASPEIPS----NISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             HHHHHhc------cCCCcCCc----ccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            1111110      11111212    22344889999999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.7e-35  Score=309.91  Aligned_cols=261  Identities=19%  Similarity=0.270  Sum_probs=190.1

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+|+. .+++.||||+++...  ......+.+|+.++++++||||+++++++...        .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~   72 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQE--------S   72 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeC--------C
Confidence            477889999999999999995 468999999986432  22346788899999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||++ ++|.+++........+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        73 ~~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~  148 (285)
T cd07861          73 RLYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLA  148 (285)
T ss_pred             eEEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEEcCCCcEEECcccce
Confidence            7899999997 6888887654334568999999999999999999999   88999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      +..........            ...++..|++||.+.. ..++.++|||||||++|||+||+.|+..... ........
T Consensus       149 ~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~  216 (285)
T cd07861         149 RAFGIPVRVYT------------HEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFR  216 (285)
T ss_pred             eecCCCccccc------------CCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence            65432111000            0122446788887654 4578899999999999999999988864332 11111111


Q ss_pred             -ccCcC-----Ccc------ccccc---cccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 -FGSQD-----GRR------RIVDP---VVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 -~~~~~-----~~~------~~~d~---~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                       .....     ...      ...+.   ............++.+++.+||+.||.+|||+.+|+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         217 ILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence             00000     000      00000   0000001112345789999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=7.8e-35  Score=304.36  Aligned_cols=265  Identities=20%  Similarity=0.309  Sum_probs=198.9

Q ss_pred             CHHHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeecc
Q 044236          431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIES  508 (747)
Q Consensus       431 ~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~  508 (747)
                      ++.++..+.+.|++.+.||+|+||.||+|+. .+++.+|+|.+.... .....+..|+.++.++ +||||+++++++...
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            4556666778899999999999999999995 568999999886433 3345688899999998 699999999998753


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                      ..  .......++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.
T Consensus        86 ~~--~~~~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dl~~~nili~~~~~  159 (282)
T cd06636          86 SP--PGHDDQLWLVMEFCGAGSVTDLVKNTK-GNALKEDWIAYICREILRGLAHLHA---HKVIHRDIKGQNVLLTENAE  159 (282)
T ss_pred             cc--cCCCCEEEEEEEeCCCCcHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCC
Confidence            21  112457899999999999999886532 3458888899999999999999999   78999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCC
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTG  663 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~  663 (747)
                      +||+|||+++........            .....++..|.+||.+.     ...++.++|||||||++|||++|+.|+.
T Consensus       160 ~~l~dfg~~~~~~~~~~~------------~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~  227 (282)
T cd06636         160 VKLVDFGVSAQLDRTVGR------------RNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLC  227 (282)
T ss_pred             EEEeeCcchhhhhccccC------------CCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCcc
Confidence            999999998654321110            01123455678888764     3457889999999999999999999986


Q ss_pred             CChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......  ........      ..+...   .......+.+++.+||..||.+|||+.|+++
T Consensus       228 ~~~~~~--~~~~~~~~------~~~~~~---~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         228 DMHPMR--ALFLIPRN------PPPKLK---SKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             ccCHHh--hhhhHhhC------CCCCCc---ccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            433211  11110000      001110   1122335889999999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=4.8e-35  Score=303.66  Aligned_cols=250  Identities=21%  Similarity=0.347  Sum_probs=190.2

Q ss_pred             ccccCCCCeeEEEEEeCC-------CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          446 SFMGEGSRGKLYKGRLEN-------GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~-------g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +.||+|+||.||+|+..+       ++.+|||.+.... ......+.+|+++++.++||||++++++|...        .
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~   72 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLN--------E   72 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCC--------C
Confidence            368999999999998532       2679999876432 23456788999999999999999999998763        3


Q ss_pred             eEEEEEeccCCCCcccccccCC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-----c
Q 044236          518 KVFLVYEYIPNGSYRAHLSENC----PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-----I  588 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-----~  588 (747)
                      ..++||||+++|+|.++++...    ....++|..++.++.|++.||+|||+   .+++|+||||+||+++.++     .
T Consensus        73 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~~~  149 (269)
T cd05044          73 PQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADRV  149 (269)
T ss_pred             CeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHh---CCcccCCCChheEEEecCCCCCCcc
Confidence            6899999999999999986431    22358899999999999999999998   7899999999999999877     8


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEA  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~  667 (747)
                      +|++|||+++...........+          ....+..|++||.+....++.++|||||||++|||+| |..|+.....
T Consensus       150 ~~l~dfg~~~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~  219 (269)
T cd05044         150 VKIGDFGLARDIYKSDYYRKEG----------EGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN  219 (269)
T ss_pred             eEECCcccccccccccccccCc----------ccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH
Confidence            9999999987553322111100          0112346788898888889999999999999999998 8888864433


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ........   ....     .    ..+...+..+.+++.+||..+|.+||++.+|++.|+
T Consensus       220 ~~~~~~~~---~~~~-----~----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~  268 (269)
T cd05044         220 QEVLQHVT---AGGR-----L----QKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ  268 (269)
T ss_pred             HHHHHHHh---cCCc-----c----CCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            22221111   1100     0    011223345889999999999999999999999886

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=8.3e-35  Score=299.56  Aligned_cols=249  Identities=18%  Similarity=0.289  Sum_probs=195.5

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+++ ..+|+.||+|++...  ......++.+|+.++++++||||+++++++...        +
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~   72 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEEN--------G   72 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCC--------C
Confidence            47888999999999999998 457899999998743  233456789999999999999999999988663        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.+++.... ...+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~l~~~nil~~~~~~~~l~d~~~~  148 (256)
T cd08218          73 NLYIVMDYCEGGDLYKKINAQR-GVLFPEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIA  148 (256)
T ss_pred             eEEEEEecCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEeeccce
Confidence            7899999999999999886532 2357899999999999999999998   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~~~  676 (747)
                      ...........            ...++..|.+||......++.++|||||||++|||++|+.|+...+.... ..+.. 
T Consensus       149 ~~~~~~~~~~~------------~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~-  215 (256)
T cd08218         149 RVLNSTVELAR------------TCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIR-  215 (256)
T ss_pred             eecCcchhhhh------------hccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhc-
Confidence            65433211100            01234567888888888889999999999999999999998865443221 11111 


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .   ..     +..    +......+.+++.+||+.+|++||++.||++.
T Consensus       216 ~---~~-----~~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         216 G---SY-----PPV----SSHYSYDLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             C---CC-----CCC----cccCCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            0   00     111    12233448899999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=4.2e-35  Score=307.83  Aligned_cols=247  Identities=19%  Similarity=0.291  Sum_probs=192.0

Q ss_pred             CccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          443 DSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      .....||+|+||.||++.. .++..||||.+........+.+.+|+.++++++|+||+++++.+...        +..++
T Consensus        25 ~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~--------~~~~l   96 (292)
T cd06658          25 DSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVG--------DELWV   96 (292)
T ss_pred             hhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecC--------CeEEE
Confidence            3346699999999999984 56899999998765555567788999999999999999999988763        47899


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      ||||+++++|.+++..    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++....
T Consensus        97 v~e~~~~~~L~~~~~~----~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (292)
T cd06658          97 VMEFLEGGALTDIVTH----TRMNEEQIATVCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVS  169 (292)
T ss_pred             EEeCCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEccCcchhhcc
Confidence            9999999999998753    348899999999999999999999   789999999999999999999999999986443


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCC
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG  681 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~  681 (747)
                      ......            ....++..|++||......++.++|||||||++|||++|+.|+...............    
T Consensus       170 ~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~----  233 (292)
T cd06658         170 KEVPKR------------KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDN----  233 (292)
T ss_pred             cccccC------------ceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhc----
Confidence            211100            0123456788899888888999999999999999999999998654332211111100    


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                          ..+....  .......+.+++.+||..||.+|||+.|+++.
T Consensus       234 ----~~~~~~~--~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         234 ----LPPRVKD--SHKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             ----CCCcccc--ccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence                0111100  11123347889999999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.1e-34  Score=300.22  Aligned_cols=254  Identities=19%  Similarity=0.260  Sum_probs=193.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|++.+.||+|+||.||+|+. .+|..||||.+....     ....+.+.+|+.++++++||||+++++++.+..    
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----   77 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPM----   77 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCC----
Confidence            4688899999999999999985 568999999886321     223467888999999999999999999876532    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ...+++||||+++|+|.+++...   ..+++.....++.|++.||+|||+   .+|+|+||||+||+++.++.+||+|
T Consensus        78 --~~~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~D  149 (265)
T cd06652          78 --ERTLSIFMEHMPGGSIKDQLKSY---GALTENVTRKYTRQILEGVSYLHS---NMIVHRDIKGANILRDSVGNVKLGD  149 (265)
T ss_pred             --CceEEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEecCCCCEEECc
Confidence              24688999999999999998653   347888899999999999999999   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++..........         +.....++..|++||.+....++.++|||||||++|||++|+.|+.......  ..
T Consensus       150 fg~~~~~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~--~~  218 (265)
T cd06652         150 FGASKRLQTICLSGT---------GMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMA--AI  218 (265)
T ss_pred             Ccccccccccccccc---------ccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHH--HH
Confidence            999875432111000         0111234567889998888888999999999999999999999986432211  11


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......     ..+    ..+......+.+++.+|+. +|++||+++||++.
T Consensus       219 ~~~~~~~-----~~~----~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         219 FKIATQP-----TNP----VLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             HHHhcCC-----CCC----CCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence            1111111     011    1233444557888899985 99999999999853

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=4.7e-35  Score=309.10  Aligned_cols=261  Identities=18%  Similarity=0.200  Sum_probs=191.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|.+.+.||+|+||.||+|+. .+++.||+|.++... ......+.+|+.++++++||||+++++++...        .
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~--------~   77 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTE--------K   77 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecC--------C
Confidence            5688899999999999999985 468899999987433 22345677899999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||++ ++|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~~qi~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  151 (301)
T cd07873          78 SLTLVFEYLD-KDLKQYLDDC--GNSINMHNVKLFLFQLLRGLNYCHR---RKVLHRDLKPQNLLINERGELKLADFGLA  151 (301)
T ss_pred             eEEEEEeccc-cCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHHHEEECCCCcEEECcCcch
Confidence            7899999997 5898888653  3458899999999999999999999   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~~  675 (747)
                      +..........            ...++..|++||.+.. ..++.++|||||||++|||+||+.||...+.. ....+..
T Consensus       152 ~~~~~~~~~~~------------~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~  219 (301)
T cd07873         152 RAKSIPTKTYS------------NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFR  219 (301)
T ss_pred             hccCCCCCccc------------ccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            65322111000            0122456778887654 34788999999999999999999988754332 2211111


Q ss_pred             ccCcC---Cccccc---------cccccCC----CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQD---GRRRIV---------DPVVLTT----CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~---~~~~~~---------d~~~~~~----~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....   ......         .+.....    ........+.+++.+|++.||.+|||+.|+++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         220 ILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             HcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            11000   000000         0111011    111234457899999999999999999999863

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.3e-34  Score=306.16  Aligned_cols=266  Identities=20%  Similarity=0.203  Sum_probs=196.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|+..+.||+|+||.||+++. ..++.||+|.+....   ......+.+|+++++.++||||+++++++...       
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-------   73 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETK-------   73 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecC-------
Confidence            3688899999999999999985 458899999987543   23345778999999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        74 -~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~NIll~~~~~~~l~dfg  146 (305)
T cd05609          74 -RHLCMVMEYVEGGDCATLLKNI---GALPVDMARMYFAETVLALEYLHN---YGIVHRDLKPDNLLITSMGHIKLTDFG  146 (305)
T ss_pred             -CEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHEEECCCCCEEEeeCC
Confidence             4789999999999999999753   458999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccC---CCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          596 ISIIMEEHEKLEAKG---EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       596 la~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      +++............   ......+......++..|++||.+....++.++|||||||++|||++|..|+.......+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~  226 (305)
T cd05609         147 LSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFG  226 (305)
T ss_pred             CccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            986422111100000   00000000011234556889998888889999999999999999999998886543322211


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      .....      ....+....    ..+..+.+++.+||+.+|++||++.++.+.|+.
T Consensus       227 ~~~~~------~~~~~~~~~----~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         227 QVISD------DIEWPEGDE----ALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             HHHhc------ccCCCCccc----cCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence            11100      001111111    123347899999999999999997666665553

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=1.8e-34  Score=299.97  Aligned_cols=262  Identities=18%  Similarity=0.270  Sum_probs=193.2

Q ss_pred             CCccccccCCCCeeEEEEEeC----CCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      |.+.+.||+|+||.||+|.+.    +++.||||.+...  .....+++.+|++++++++||||+++++++......  ..
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~--~~   78 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAK--GR   78 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCC--Cc
Confidence            566788999999999999842    3689999998743  233456788999999999999999999988753211  11


Q ss_pred             CceEEEEEeccCCCCcccccccC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSEN---CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                      ....++++||+++|+|.+++...   .....+++...+.++.|++.||+|||+   .+|+||||||+||+++.++.+||+
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~nili~~~~~~kl~  155 (273)
T cd05074          79 LPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS---KNFIHRDLAARNCMLNENMTVCVA  155 (273)
T ss_pred             ccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccchhhEEEcCCCCEEEC
Confidence            12457899999999998876432   112357889999999999999999998   789999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~  671 (747)
                      |||+++............   .       ......+++||......++.++|||||||++|||++ |+.|+...+.....
T Consensus       156 dfg~~~~~~~~~~~~~~~---~-------~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~  225 (273)
T cd05074         156 DFGLSKKIYSGDYYRQGC---A-------SKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIY  225 (273)
T ss_pred             cccccccccCCcceecCC---C-------ccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHH
Confidence            999997653322111100   0       011234567777777778999999999999999999 78888654432221


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ......  ..      .....    .....+.+++.+||+.+|++||++.|+++.|+.+
T Consensus       226 ~~~~~~--~~------~~~~~----~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         226 NYLIKG--NR------LKQPP----DCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             HHHHcC--Cc------CCCCC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            111111  00      00011    2233589999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=2e-34  Score=305.14  Aligned_cols=246  Identities=24%  Similarity=0.322  Sum_probs=189.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ..|+..+.||+|+||.||+|+. .+++.||+|.+....   ....+++.+|++++++++||||++++++|...       
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~-------   87 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLRE-------   87 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeC-------
Confidence            4578889999999999999985 468999999986432   23345788999999999999999999999863       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++||||++ |++.+++...  ...+++..+..++.|++.||.|||+   .+|+||||+|+||+++.++.+||+|||
T Consensus        88 -~~~~lv~e~~~-g~l~~~~~~~--~~~l~~~~~~~~~~ql~~~L~~LH~---~~i~H~dl~p~nIl~~~~~~~kL~dfg  160 (307)
T cd06607          88 -HTAWLVMEYCL-GSASDILEVH--KKPLQEVEIAAICHGALQGLAYLHS---HERIHRDIKAGNILLTEPGTVKLADFG  160 (307)
T ss_pred             -CeEEEEHHhhC-CCHHHHHHHc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEECCCCCEEEeecC
Confidence             36899999997 5777766533  3458999999999999999999998   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      +++.......                ..+...|++||.+.   ...++.++|||||||++|||+||+.|+...+......
T Consensus       161 ~~~~~~~~~~----------------~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~  224 (307)
T cd06607         161 SASLVSPANS----------------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALY  224 (307)
T ss_pred             cceecCCCCC----------------ccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHH
Confidence            9865432110                12334577888763   4568889999999999999999998886543222111


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....  ..      .+..   ........+.+++.+||+.+|++||++.+|+.+
T Consensus       225 ~~~~--~~------~~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         225 HIAQ--ND------SPTL---SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             HHhc--CC------CCCC---CchhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            1110  00      0111   112234558999999999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=6.9e-35  Score=305.34  Aligned_cols=260  Identities=22%  Similarity=0.232  Sum_probs=191.4

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|+..+.||+|+||.||+|+.. +|+.||+|++....  ....+.+.+|++++++++||||+++++++...        
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--------   72 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRK--------   72 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeC--------
Confidence            36888899999999999999954 68999999986432  22335678999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||++++.|..++..   ...++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        73 ~~~~~v~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~ql~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~  146 (286)
T cd07847          73 RKLHLVFEYCDHTVLNELEKN---PRGVPEHLIKKIIWQTLQAVNFCHK---HNCIHRDVKPENILITKQGQIKLCDFGF  146 (286)
T ss_pred             CEEEEEEeccCccHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCChhhEEEcCCCcEEECcccc
Confidence            478999999999888877654   2358999999999999999999999   8899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~  674 (747)
                      +...........            ...+...|.+||.+.. ..++.++|||||||++|||++|+.||..... +....+.
T Consensus       147 ~~~~~~~~~~~~------------~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~  214 (286)
T cd07847         147 ARILTGPGDDYT------------DYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIR  214 (286)
T ss_pred             ceecCCCccccc------------CcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Confidence            976543221000            0123345677887654 4578899999999999999999999864432 2111111


Q ss_pred             hccCc------------CCc--cccccccccC---CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQ------------DGR--RRIVDPVVLT---TCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~------------~~~--~~~~d~~~~~---~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .....            ...  ....++....   ...+.....+.+++.+||+.+|++||++.|++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         215 KTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             HHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            10000            000  0000110000   000122345889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=2e-34  Score=299.06  Aligned_cols=254  Identities=20%  Similarity=0.327  Sum_probs=193.8

Q ss_pred             CCCccccccCCCCeeEEEEEeCC--CcEEEEEEeecc----------chhcHHHHHHHHHHHhc-CCCCCcceeeeeeec
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLEN--GTYVAIRSLTFL----------KKYSIQNLKVRLDFLSK-LQHPHLVSLLGHCIE  507 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~--g~~vAvK~l~~~----------~~~~~~~~~~E~~~l~~-l~H~nIv~l~g~~~~  507 (747)
                      +|++.+.||+|+||.||+|....  ++.+|+|.+...          ......++.+|+.++.+ ++||||++++++|..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            47788899999999999999644  789999988632          12234567788888875 799999999999876


Q ss_pred             cCCCCCCCCceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC
Q 044236          508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH  586 (747)
Q Consensus       508 ~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~  586 (747)
                      .        ...++||||+++++|.+++... .....+++..++.++.|++.||.|||+.  .+++||||||+||+++.+
T Consensus        81 ~--------~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~~nil~~~~  150 (269)
T cd08528          81 N--------DRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGED  150 (269)
T ss_pred             C--------CeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCHHHEEECCC
Confidence            3        4789999999999999887532 1234688999999999999999999963  578999999999999999


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE  666 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~  666 (747)
                      +.+||+|||++.........             ....++..|.+||......++.++|||||||++|||++|+.|+....
T Consensus       151 ~~~~l~dfg~~~~~~~~~~~-------------~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~  217 (269)
T cd08528         151 DKVTITDFGLAKQKQPESKL-------------TSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN  217 (269)
T ss_pred             CcEEEecccceeeccccccc-------------ccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC
Confidence            99999999999764432210             01223456788888888888999999999999999999999986544


Q ss_pred             hhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      .........  . ...    .+.....+    ...+.+++.+||+.||++||++.|+..+++
T Consensus       218 ~~~~~~~~~--~-~~~----~~~~~~~~----~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         218 MLSLATKIV--E-AVY----EPLPEGMY----SEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             HHHHHHHHh--h-ccC----CcCCcccC----CHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            332221111  0 000    11101112    234889999999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.7e-35  Score=322.51  Aligned_cols=258  Identities=15%  Similarity=0.153  Sum_probs=189.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ...|.+.+.||+|+||.||+|+. ..++.||||...      ...+.+|+++|++++|+|||++++++...        .
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~--------~  233 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVG--------G  233 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEEC--------C
Confidence            44689999999999999999995 458899999643      23456899999999999999999998763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+. |+|..++...  ...++|..++.|+.|+++||.|||+   .+||||||||+|||++.++.+||+|||++
T Consensus       234 ~~~lv~e~~~-~~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDLKP~NILl~~~~~vkL~DFGla  307 (461)
T PHA03211        234 LTCLVLPKYR-SDLYTYLGAR--LRPLGLAQVTAVARQLLSAIDYIHG---EGIIHRDIKTENVLVNGPEDICLGDFGAA  307 (461)
T ss_pred             EEEEEEEccC-CCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECcCCHHHEEECCCCCEEEcccCCc
Confidence            7899999995 6888887653  3469999999999999999999999   88999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCC-CCCCh-------hhh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV-TGKGE-------AFL  669 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p-~~~~~-------~~~  669 (747)
                      +..........          .....++..|++||++....++.++|||||||++|||++|..+ |....       ...
T Consensus       308 ~~~~~~~~~~~----------~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~  377 (461)
T PHA03211        308 CFARGSWSTPF----------HYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQ  377 (461)
T ss_pred             eeccccccccc----------ccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHH
Confidence            76532211100          0113567789999999888899999999999999999998543 22110       111


Q ss_pred             HHHHHhccCcC--Cccc----------------cccccccCCCCH---HHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQD--GRRR----------------IVDPVVLTTCSQ---ESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~--~~~~----------------~~d~~~~~~~~~---~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +..+.......  ....                ...+........   .....+.+|+.+||+.||.+|||+.|+++.
T Consensus       378 l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        378 ILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             HHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence            21221111000  0000                000000000000   122357889999999999999999999874

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1.5e-34  Score=307.69  Aligned_cols=198  Identities=19%  Similarity=0.249  Sum_probs=155.7

Q ss_pred             ccccCCCCeeEEEEEeC---CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEE
Q 044236          446 SFMGEGSRGKLYKGRLE---NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      ..||+|+||.||+|+..   ++..||+|.+....  ....+.+|++++++++||||+++++++....      ....++|
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------~~~~~lv   78 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHS------DRKVWLL   78 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccC------CCeEEEE
Confidence            57999999999999854   35789999886432  2346788999999999999999999986532      3478999


Q ss_pred             EeccCCCCcccccccC------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee----cCCCcEEEe
Q 044236          523 YEYIPNGSYRAHLSEN------CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL----DEHRIAKLS  592 (747)
Q Consensus       523 ~Ey~~~gsL~~~l~~~------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl~  592 (747)
                      |||+++ +|.+++...      .....+++..+..++.|++.||.|||+   .+|+||||||+|||+    +.++.+||+
T Consensus        79 ~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~kl~  154 (317)
T cd07867          79 FDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIA  154 (317)
T ss_pred             EeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEccCCCCCCcEEEe
Confidence            999975 777766421      112358899999999999999999999   889999999999999    567899999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      |||+++..........         ......++..|+|||.+.. ..++.++|||||||++|||+||++||..
T Consensus       155 DfG~a~~~~~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         155 DMGFARLFNSPLKPLA---------DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             eccceeccCCCccccc---------ccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            9999976543221100         0111245667889998865 4588999999999999999999998864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=7.2e-35  Score=318.70  Aligned_cols=259  Identities=18%  Similarity=0.204  Sum_probs=191.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC---CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE---NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ..+|.+.+.||+|+||.||+|...   .+..||||.+...     ....+|++++++++|||||++++++...       
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~-------  158 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWK-------  158 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeC-------
Confidence            356999999999999999999743   3678999987632     2346799999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+. ++|.+++..   ...++|..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       159 -~~~~lv~e~~~-~~l~~~l~~---~~~l~~~~~~~i~~ql~~aL~~LH~---~givHrDlkp~Nill~~~~~~~l~DfG  230 (392)
T PHA03207        159 -STVCMVMPKYK-CDLFTYVDR---SGPLPLEQAITIQRRLLEALAYLHG---RGIIHRDVKTENIFLDEPENAVLGDFG  230 (392)
T ss_pred             -CEEEEEehhcC-CCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEccCc
Confidence             47899999996 588888843   3468999999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh----hhHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA----FLLN  671 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~----~~~~  671 (747)
                      +++..........          .....++..|++||++....++.++|||||||++|||++|+.|+.....    ..+.
T Consensus       231 ~a~~~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~  300 (392)
T PHA03207        231 AACKLDAHPDTPQ----------CYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLR  300 (392)
T ss_pred             cccccCccccccc----------ccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHH
Confidence            9975543221100          0113466788999999888999999999999999999999888753321    1122


Q ss_pred             HHHhccCcCCc-----------------ccccccccc-CC-C-CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          672 EMASFGSQDGR-----------------RRIVDPVVL-TT-C-SQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       672 ~~~~~~~~~~~-----------------~~~~d~~~~-~~-~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .+.........                 .....+... +. . .......+.+++.+|+..||.+|||+.|++.+=
T Consensus       301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p  376 (392)
T PHA03207        301 SIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLP  376 (392)
T ss_pred             HHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhCc
Confidence            21111000000                 000000000 00 0 001123477889999999999999999999763

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=313.94  Aligned_cols=244  Identities=18%  Similarity=0.294  Sum_probs=195.8

Q ss_pred             cccccCCCCeeEEEEE-eCCCcEEEEEEeec----cchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          445 LSFMGEGSRGKLYKGR-LENGTYVAIRSLTF----LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~----~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ..+||+|+|=+||||. -.+|..||.-.++.    ......+.|..|+++|+.|+|||||++|.++.+..      ...+
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~------n~~i  118 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTD------NKTI  118 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCC------Ccee
Confidence            3569999999999998 45688888644432    23445688999999999999999999999988743      3578


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCcEEEecccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRIAKLSDYGISI  598 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~  598 (747)
                      -+|+|.|..|+|+.|..+.   +.++....+.+++||++||.|||+.. |+|||||||.+||+|+. .|.+||+|.|||+
T Consensus       119 n~iTEL~TSGtLr~Y~kk~---~~vn~kaik~W~RQILkGL~yLHs~~-PPIIHRDLKCDNIFinG~~G~VKIGDLGLAt  194 (632)
T KOG0584|consen  119 NFITELFTSGTLREYRKKH---RRVNIKAIKSWCRQILKGLVYLHSQD-PPIIHRDLKCDNIFVNGNLGEVKIGDLGLAT  194 (632)
T ss_pred             eeeeecccCCcHHHHHHHh---ccCCHHHHHHHHHHHHHHhhhhhcCC-CCccccccccceEEEcCCcCceeecchhHHH
Confidence            8999999999999999874   34788889999999999999999876 69999999999999974 6899999999998


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCC--ChhhhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK--GEAFLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~--~~~~~~~~~~~~  676 (747)
                      .+.......              ..||+.+||||+.. ..|++.+||||||+.++||+|+..||..  ....+..++.+-
T Consensus       195 l~r~s~aks--------------vIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SG  259 (632)
T KOG0584|consen  195 LLRKSHAKS--------------VIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSG  259 (632)
T ss_pred             Hhhccccce--------------eccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcC
Confidence            876443211              35788899999876 7899999999999999999999999973  222333333332


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........+-||            ++.+++.+|+.. .++|||+.|++.+
T Consensus       260 iKP~sl~kV~dP------------evr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  260 IKPAALSKVKDP------------EVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             CCHHHhhccCCH------------HHHHHHHHHhcC-chhccCHHHHhhC
Confidence            222233333333            388999999999 9999999999864

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=2.3e-34  Score=296.06  Aligned_cols=249  Identities=20%  Similarity=0.318  Sum_probs=194.0

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|+..+.||+|+||.||++.. .+++.+|||.+...  .....+.+.+|++++++++||||+++++.+..        .+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~--------~~   72 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE--------DK   72 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEec--------CC
Confidence            477889999999999999984 56899999998743  23345678899999999999999999998765        34


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-CcEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGl  596 (747)
                      ..++||||+++++|.+++.... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.+ +.+||+|||+
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~~l~d~~~  148 (256)
T cd08220          73 ALMIVMEYAPGGTLAEYIQKRC-NSLLDEDTILHFFVQILLALHHVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGI  148 (256)
T ss_pred             EEEEEEecCCCCCHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccCCC
Confidence            7899999999999999997532 3458999999999999999999999   799999999999999854 5689999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ++.........             ...++..|++||.+....++.++|||||||++|||++|+.|+...+..........
T Consensus       149 ~~~~~~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~  215 (256)
T cd08220         149 SKILSSKSKAY-------------TVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMS  215 (256)
T ss_pred             ceecCCCcccc-------------ccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHh
Confidence            87653321100             01244568888988888889999999999999999999998875443222111111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..   .     +.+    +......+.+++.+||+.+|++|||+.|++.+
T Consensus       216 ~~---~-----~~~----~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         216 GT---F-----API----SDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             cC---C-----CCC----CCCcCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            00   0     011    11223348899999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=9.4e-35  Score=305.93  Aligned_cols=245  Identities=18%  Similarity=0.243  Sum_probs=191.2

Q ss_pred             cccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          445 LSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ...||+|+||.||+|.. .+++.||||.+........+.+.+|+.+++.++||||+++++++...        +..++||
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~--------~~~~iv~   97 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVG--------EELWVLM   97 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeC--------CeEEEEE
Confidence            34699999999999984 56899999999765545566788999999999999999999988763        4789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++++|..++..    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.....
T Consensus        98 e~~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~  170 (297)
T cd06659          98 EFLQGGALTDIVSQ----TRLNEEQIATVCESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD  170 (297)
T ss_pred             ecCCCCCHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHeEEccCCcEEEeechhHhhcccc
Confidence            99999999987753    358899999999999999999998   78999999999999999999999999998644321


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      ...            .....++..|++||.+....++.++|||||||++|||++|+.|+...................  
T Consensus       171 ~~~------------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~--  236 (297)
T cd06659         171 VPK------------RKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPK--  236 (297)
T ss_pred             ccc------------ccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCC--
Confidence            110            011234567888998888889999999999999999999999886443222111111000000  


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                          ...    .......+.+++.+||+.+|.+||++.++++.
T Consensus       237 ----~~~----~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         237 ----LKN----AHKISPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             ----ccc----cCCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence                000    11122347889999999999999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=2.3e-34  Score=298.02  Aligned_cols=258  Identities=22%  Similarity=0.352  Sum_probs=198.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||.|+||.||+|.. .++..+|+|++.... ....+.+.+|+++++.++|+||+++++.+...        .
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~   72 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVG--------D   72 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeC--------C
Confidence            4688899999999999999984 568899999986433 23567889999999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.++++...+...+++.....++.|++.||+|||+   .+|+||||||+||++++++.+||+|||++
T Consensus        73 ~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~---~~i~h~~l~p~ni~~~~~~~~~l~df~~~  149 (267)
T cd06610          73 ELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS---NGQIHRDIKAGNILLGEDGSVKIADFGVS  149 (267)
T ss_pred             EEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcccchH
Confidence            789999999999999999764333568999999999999999999998   88999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~  675 (747)
                      ...........        .......++..|++||.+... .++.++|||||||++|||++|+.|+....... ......
T Consensus       150 ~~~~~~~~~~~--------~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~  221 (267)
T cd06610         150 ASLADGGDRTR--------KVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQ  221 (267)
T ss_pred             HHhccCccccc--------cccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhc
Confidence            66543221100        001112345567888877666 78899999999999999999999987543221 111111


Q ss_pred             ccCcCCccccccccccCCC-CHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTC-SQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                         ..      .+.+.... .......+.+++.+||+.||++||++.|+++
T Consensus       222 ---~~------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         222 ---ND------PPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             ---CC------CCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence               00      01111100 1123445889999999999999999999986

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.2e-34  Score=299.32  Aligned_cols=255  Identities=21%  Similarity=0.349  Sum_probs=191.2

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch----------hcHHHHHHHHHHHhcCCCCCcceeeeeeeccC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK----------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESG  509 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~----------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~  509 (747)
                      +|...+.||+|+||.||+|.. .+|+.||||.++....          ...+.+.+|+.++++++||||+++++++... 
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-   80 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTE-   80 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccC-
Confidence            366778999999999999984 5689999998863211          1134678899999999999999999988763 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcE
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIA  589 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~  589 (747)
                             +..++||||+++|+|.++++..   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+
T Consensus        81 -------~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~~~nil~~~~~~~  147 (272)
T cd06629          81 -------EYLSIFLEYVPGGSIGSCLRTY---GRFEEQLVRFFTEQVLEGLAYLHS---KGILHRDLKADNLLVDADGIC  147 (272)
T ss_pred             -------CceEEEEecCCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHhh---CCeeecCCChhhEEEcCCCeE
Confidence                   4789999999999999998764   468999999999999999999999   789999999999999999999


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC--CCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR--TKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      |++|||+++..........          .....++..|.+||......  ++.++|||||||++||+++|..|+...+.
T Consensus       148 ~l~d~~~~~~~~~~~~~~~----------~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~  217 (272)
T cd06629         148 KISDFGISKKSDDIYDNDQ----------NMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEA  217 (272)
T ss_pred             EEeeccccccccccccccc----------cccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcch
Confidence            9999999865432111000          00122345677888776544  78999999999999999999999864332


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .  .......... ....+++..    .......+.+++.+||+.+|.+|||+.+|++.
T Consensus       218 ~--~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         218 I--AAMFKLGNKR-SAPPIPPDV----SMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             H--HHHHHhhccc-cCCcCCccc----cccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            2  1111111111 111111111    12233458889999999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=5.3e-35  Score=305.93  Aligned_cols=259  Identities=18%  Similarity=0.185  Sum_probs=187.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|+..+.||+|+||.||+|+. .+|+.||+|+++...  ......+.+|++++++++||||+++++++.+.        .
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~--------~   72 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSD--------K   72 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccC--------C
Confidence            477888999999999999995 568999999987432  22235677899999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++|+||++ ++|.+++...  ...+++..+..++.||++||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        73 ~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~  146 (284)
T cd07839          73 KLTLVFEYCD-QDLKKYFDSC--NGDIDPEIVKSFMFQLLKGLAFCHS---HNVLHRDLKPQNLLINKNGELKLADFGLA  146 (284)
T ss_pred             ceEEEEecCC-CCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEcCCCcEEECccchh
Confidence            7899999997 4788777643  3458999999999999999999999   88999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCCh--hhhHHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGE--AFLLNEMA  674 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~--~~~~~~~~  674 (747)
                      +..........            ...++..|++||.+... .++.++|||||||++|||+||..|+....  ...+..+.
T Consensus       147 ~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~  214 (284)
T cd07839         147 RAFGIPVRCYS------------AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIF  214 (284)
T ss_pred             hccCCCCCCcC------------CCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHH
Confidence            75432111000            01224467888876554 47889999999999999999977753222  11111111


Q ss_pred             hccCcC------Ccccccccc----cc-----CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQD------GRRRIVDPV----VL-----TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~------~~~~~~d~~----~~-----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......      ......+..    ..     ....+.....+.+++.+||+.||.+|||+.|++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         215 RLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             HHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            110000      000000000    00     0011123456889999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.5e-34  Score=296.09  Aligned_cols=247  Identities=22%  Similarity=0.357  Sum_probs=191.5

Q ss_pred             CCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc-----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK-----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      +|+..+.||+|+||+||+|... +++.||+|.+....     ....+.+.+|++++++++|+||+++++++...      
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~------   74 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREE------   74 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecC------
Confidence            3667788999999999999964 78999999986433     23456788999999999999999999988763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++++|.+++...   ..+++..+..++.|++.||+|||+   .+|+|+||||+||+++.++.+||+||
T Consensus        75 --~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~~~ni~~~~~~~~kl~d~  146 (258)
T cd06632          75 --DNLYIFLELVPGGSLAKLLKKY---GSFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKGANILVDTNGVVKLADF  146 (258)
T ss_pred             --CeEEEEEEecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccC
Confidence              4789999999999999998753   358899999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC-CCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR-TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      |++..........             ...++..|++||.+.... ++.++|||||||++|||++|+.|+.......  ..
T Consensus       147 ~~~~~~~~~~~~~-------------~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~--~~  211 (258)
T cd06632         147 GMAKQVVEFSFAK-------------SFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVA--AV  211 (258)
T ss_pred             ccceecccccccc-------------ccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHH--HH
Confidence            9987653322100             012334566777766555 8899999999999999999999987544211  11


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .........     +.    .+......+.+++.+||+.+|.+||++.+++.
T Consensus       212 ~~~~~~~~~-----~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         212 FKIGRSKEL-----PP----IPDHLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             HHHHhcccC-----CC----cCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence            111110111     11    12223344788999999999999999999985

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=1.2e-34  Score=304.62  Aligned_cols=250  Identities=18%  Similarity=0.314  Sum_probs=195.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ++|.+.+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.++++++||||++++++|...        +.
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~--------~~   90 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVG--------DE   90 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeC--------Cc
Confidence            6788899999999999999984 56889999998755445557788999999999999999999998763        37


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++.+    ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++.
T Consensus        91 ~~lv~e~~~~~~L~~~~~~----~~l~~~~~~~i~~~l~~al~~LH~---~gi~H~dL~p~Nili~~~~~~kL~dfg~~~  163 (293)
T cd06647          91 LWVVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (293)
T ss_pred             EEEEEecCCCCcHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHh---CCEeeccCCHHHEEEcCCCCEEEccCccee
Confidence            8999999999999999864    247899999999999999999999   889999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .........            ....++..|++||.+....++.++|||||||++||+++|+.||.......  .......
T Consensus       164 ~~~~~~~~~------------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~--~~~~~~~  229 (293)
T cd06647         164 QITPEQSKR------------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR--ALYLIAT  229 (293)
T ss_pred             ccccccccc------------ccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhh--heeehhc
Confidence            543221110            01123456788888877888999999999999999999999987543211  1111000


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .. .     +..  ..+......+.+++.+||+.+|.+||++.+++.+
T Consensus       230 ~~-~-----~~~--~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         230 NG-T-----PEL--QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             CC-C-----CCC--CCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            00 0     000  0112233458889999999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=7.4e-35  Score=305.14  Aligned_cols=260  Identities=19%  Similarity=0.284  Sum_probs=190.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|+..+.||+|+||.||+|..+ +++.||+|++.....  ...+.+.+|+++++.++||||+++++++...        
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------   72 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRK--------   72 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccC--------
Confidence            36888899999999999999964 589999998764322  2345678899999999999999999998753        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++++|..+...   ...++|..++.++.|+++||+|||+   .+|+||||+|+||+++.++.+||+|||+
T Consensus        73 ~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~h~~l~p~ni~~~~~~~~~l~dfg~  146 (286)
T cd07846          73 KRLYLVFEFVDHTVLDDLEKY---PNGLDESRVRKYLFQILRGIEFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGF  146 (286)
T ss_pred             CeEEEEEecCCccHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCcEEEEeeee
Confidence            478999999999998887654   2348999999999999999999999   7899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~  674 (747)
                      ++.........            ....+...|++||.... ..++.++|||||||++|||++|++|+..... +......
T Consensus       147 ~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~  214 (286)
T cd07846         147 ARTLAAPGEVY------------TDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHII  214 (286)
T ss_pred             eeeccCCcccc------------CcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHH
Confidence            86543321100            00123445777887654 4577899999999999999999888764332 1111111


Q ss_pred             hccCc--CCc----------cccccccccC-----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQ--DGR----------RRIVDPVVLT-----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~--~~~----------~~~~d~~~~~-----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .....  ...          ..+..+....     ...+.....+.+++.+||+.+|++||++.++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         215 KCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             HHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            10000  000          0000010000     001223455889999999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.4e-34  Score=301.48  Aligned_cols=261  Identities=20%  Similarity=0.221  Sum_probs=195.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|...+.||.|+||.||+|.. .+++.+|+|.+.... ......+.+|++++++++||||++++++|....      ..
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~   74 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDES------SS   74 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccC------CC
Confidence            3678889999999999999995 568999999987432 234567899999999999999999999986532      34


Q ss_pred             eEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      .+++||||+++++|.+++.... ....+++.....++.|++.||+|||+   .+++|+||+|+||+++.++.+||+|||+
T Consensus        75 ~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~  151 (287)
T cd06621          75 SIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGV  151 (287)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecCCeEEEeeccc
Confidence            6899999999999998875321 23458889999999999999999999   8899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh--hhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA--FLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~--~~~~~~~  674 (747)
                      +.........              ...+...|++||.+....++.++|||||||++|||++|+.|+.....  ....+..
T Consensus       152 ~~~~~~~~~~--------------~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  217 (287)
T cd06621         152 SGELVNSLAG--------------TFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELL  217 (287)
T ss_pred             cccccccccc--------------cccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHH
Confidence            8654321110              01234467788888888899999999999999999999999875421  0001111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ............+..   .........+.+++.+||..+|.+|||+.||++.
T Consensus       218 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~  266 (287)
T cd06621         218 SYIVNMPNPELKDEP---GNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEH  266 (287)
T ss_pred             HHHhcCCchhhccCC---CCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhC
Confidence            110000000110000   0001234558899999999999999999999874

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=3.6e-34  Score=298.55  Aligned_cols=247  Identities=21%  Similarity=0.335  Sum_probs=193.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      -|+..+.||+|+||.||+|.. .+++.||||.+.... ......+.+|+.++++++||||+++++++...        ..
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--------~~   76 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD--------TK   76 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeC--------Ce
Confidence            366778899999999999984 568999999886432 23446788999999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++..    ..+++.....++.|++.|+.|||+   .+++|+||||+||+++.++.++|+|||+++
T Consensus        77 ~~lv~e~~~~~~l~~~i~~----~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~  149 (277)
T cd06641          77 LWIIMEYLGGGSALDLLEP----GPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAG  149 (277)
T ss_pred             EEEEEEeCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHcc---CCeecCCCCHHhEEECCCCCEEEeecccce
Confidence            8999999999999998864    358899999999999999999999   899999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .........            ....++..|++||.+....++.++|||||||++|||++|..|+..............  
T Consensus       150 ~~~~~~~~~------------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~--  215 (277)
T cd06641         150 QLTDTQIKR------------NTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPK--  215 (277)
T ss_pred             ecccchhhh------------ccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhc--
Confidence            553321100            011234467788888777889999999999999999999999865433222111110  


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                       ..     .+.+..    .....+.+++.+||+.+|.+||++.+++++
T Consensus       216 -~~-----~~~~~~----~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         216 -NN-----PPTLEG----NYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             -CC-----CCCCCc----ccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence             00     111112    223347889999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=2.3e-34  Score=300.88  Aligned_cols=251  Identities=18%  Similarity=0.283  Sum_probs=185.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHH-HhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDF-LSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~-l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||+++... ......+..|+.. ++.++||||+++++++...        
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~--------   72 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFRE--------   72 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecC--------
Confidence            4688899999999999999995 569999999987532 2233455566665 5667899999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ...++||||++ |+|.+++... .....+++..+..++.|++.||+|||+.  .+++||||||+||+++.++.+||+|||
T Consensus        73 ~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg  149 (283)
T cd06617          73 GDVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFG  149 (283)
T ss_pred             CcEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecc
Confidence            36899999996 6888777542 2235689999999999999999999982  289999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec----cCCCcCCceeehhHHHHHHhhCCCCCCCChh--hh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI----QRTKLEDDVYNFGFILLESLVGPIVTGKGEA--FL  669 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~--~~  669 (747)
                      +++........             ....++..|.+||.+..    ..++.++|||||||++|||++|+.|+.....  ..
T Consensus       150 ~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~  216 (283)
T cd06617         150 ISGYLVDSVAK-------------TIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQ  216 (283)
T ss_pred             ccccccccccc-------------ccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHH
Confidence            98754321110             00123445778887653    4568899999999999999999999864221  11


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +.....    .     ..+.+..   ...+..+.+++.+||..+|++||++.+++..
T Consensus       217 ~~~~~~----~-----~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  261 (283)
T cd06617         217 LKQVVE----E-----PSPQLPA---EKFSPEFQDFVNKCLKKNYKERPNYPELLQH  261 (283)
T ss_pred             HHHHHh----c-----CCCCCCc---cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            111111    0     0011111   1123348899999999999999999999863

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=3.1e-34  Score=297.33  Aligned_cols=254  Identities=18%  Similarity=0.298  Sum_probs=194.9

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      +|+..+.||+|+||.||+|. ..+++.||+|.+....      ....+.+.+|++++++++|+||+++++++.+.     
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----   75 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCED-----   75 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccC-----
Confidence            47788999999999999998 4678999999987432      12346788999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-cEEEe
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLS  592 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~  592 (747)
                         +..++||||+++++|.+++.+.   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++ .+||+
T Consensus        76 ---~~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~ql~~al~~LH~---~~i~H~~i~~~nil~~~~~~~~~l~  146 (268)
T cd06630          76 ---SHFNLFVEWMAGGSVSHLLSKY---GAFKEAVIINYTEQLLRGLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIA  146 (268)
T ss_pred             ---CeEEEEEeccCCCcHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEc
Confidence               4789999999999999998753   458899999999999999999999   7999999999999998775 69999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~  671 (747)
                      |||+++...........   ..     ....++..|++||.+....++.++||||+||++|||++|..|+...... ...
T Consensus       147 dfg~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~  218 (268)
T cd06630         147 DFGAAARLAAKGTGAGE---FQ-----GQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLA  218 (268)
T ss_pred             ccccccccccccccCCc---cc-----cccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHH
Confidence            99998765432111000   00     0123455788889887788899999999999999999999988643321 111


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .+.......     ..    ...+......+.+++.+|+..+|++||++.|+++
T Consensus       219 ~~~~~~~~~-----~~----~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         219 LIFKIASAT-----TA----PSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             HHHHHhccC-----CC----CCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            111110000     01    1223344456889999999999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=4.5e-34  Score=294.16  Aligned_cols=251  Identities=25%  Similarity=0.374  Sum_probs=193.2

Q ss_pred             CCccccccCCCCeeEEEEEeCC-----CcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRLEN-----GTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~~-----g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      |++.+.||+|+||.||+|+...     +..||+|+++..... ..+.+..|+++++.++|+||+++++++...       
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-------   73 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEE-------   73 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCC-------
Confidence            3567889999999999998543     388999999754432 567889999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...+++|||+++++|.+++..... ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||
T Consensus        74 -~~~~~i~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lh~---~~~~h~dl~~~nil~~~~~~~~l~dfg  148 (258)
T smart00219       74 -EPLMIVMEYMEGGDLLDYLRKNRP-KELSLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFG  148 (258)
T ss_pred             -CeeEEEEeccCCCCHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhc---CCeeecccccceEEEccCCeEEEcccC
Confidence             378999999999999999875321 128999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~  674 (747)
                      +++............           ...+..|++||......++.++||||+||++|||++ |..|+............
T Consensus       149 ~~~~~~~~~~~~~~~-----------~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~  217 (258)
T smart00219      149 LSRDLYDDDYYKKKG-----------GKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYL  217 (258)
T ss_pred             Cceeccccccccccc-----------CCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence            997654332111100           012345678887777789999999999999999998 68887654332222211


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ...   ..     +....    .....+.+++.+|+..+|++|||+.|+++.|
T Consensus       218 ~~~---~~-----~~~~~----~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      218 KKG---YR-----LPKPE----NCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             hcC---CC-----CCCCC----cCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            111   10     00111    1234488899999999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.9e-35  Score=303.51  Aligned_cols=251  Identities=18%  Similarity=0.248  Sum_probs=191.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeec--cchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTF--LKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~--~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ..|+++++||+||.++||++...+.+.+|+|++..  .+.+....|.+|+..|.+|+ |.+||+||+|-...        
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d--------  432 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTD--------  432 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccC--------
Confidence            35888999999999999999988888999998764  34567789999999999995 99999999997763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ..+||||||-+- ||.++|++.. .....| .++.|..|++.|+.++|.   .+|||.||||.|.|+- .|.+||+|||+
T Consensus       433 ~~lYmvmE~Gd~-DL~kiL~k~~-~~~~~~-~lk~ywkqML~aV~~IH~---~gIVHSDLKPANFLlV-kG~LKLIDFGI  505 (677)
T KOG0596|consen  433 GYLYMVMECGDI-DLNKILKKKK-SIDPDW-FLKFYWKQMLLAVKTIHQ---HGIVHSDLKPANFLLV-KGRLKLIDFGI  505 (677)
T ss_pred             ceEEEEeecccc-cHHHHHHhcc-CCCchH-HHHHHHHHHHHHHHHHHH---hceeecCCCcccEEEE-eeeEEeeeech
Confidence            489999998754 9999998752 222335 678899999999999999   8999999999999984 57899999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-----------CCCcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-----------RTKLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----------~~s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      |..+..+.+.-..          ..-+|+.-||+||.+...           +.+.++||||+|||||+|+.|+.||+.-
T Consensus       506 A~aI~~DTTsI~k----------dsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~  575 (677)
T KOG0596|consen  506 ANAIQPDTTSIVK----------DSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQI  575 (677)
T ss_pred             hcccCccccceee----------ccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHH
Confidence            9887665443221          113567778888876432           2567999999999999999999999742


Q ss_pred             hhhhHHHHHhccCcCCccccccccccCCCCHHH-HHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQES-LSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .. ....+.         .+.||...-+++... ..++.++|+.||+.||++|||+.|+++
T Consensus       576 ~n-~~aKl~---------aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  576 IN-QIAKLH---------AITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             HH-HHHHHH---------hhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence            21 122222         223332211121110 112889999999999999999999985

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.3e-34  Score=301.12  Aligned_cols=259  Identities=18%  Similarity=0.227  Sum_probs=189.1

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|+..+.||+|+||.||+|+. .+|+.||||+++...  ......+.+|++++++++||||+++++++...        .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~   72 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE--------N   72 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccC--------C
Confidence            478889999999999999985 568999999886432  22335788999999999999999999998753        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+. ++|.+++... ....+++..+..++.|+++||+|||+   .+++||||||+||+++.++.+||+|||++
T Consensus        73 ~~~~v~e~~~-~~l~~~~~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~---~~i~H~~l~p~nill~~~~~~~l~dfg~~  147 (284)
T cd07860          73 KLYLVFEFLH-QDLKKFMDAS-PLSGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLA  147 (284)
T ss_pred             cEEEEeeccc-cCHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEeeccch
Confidence            7899999996 6888887643 23468999999999999999999998   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC-CCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR-TKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      +..........            ...++..|.+||...... ++.++|||||||++|||+||+.|+..... ........
T Consensus       148 ~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~  215 (284)
T cd07860         148 RAFGVPVRTYT------------HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR  215 (284)
T ss_pred             hhcccCccccc------------cccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence            65432211100            012244678888776544 58899999999999999999988864332 22211111


Q ss_pred             ccCcCC----------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDG----------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~----------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......                ......... ....+.....+.+++.+||+.||++|||+.|++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         216 TLGTPDEVVWPGVTSLPDYKPSFPKWARQDF-SKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             HhCCCChhhhhhhhHHHHHHhhcccccccCH-HHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence            110000                000000000 0001112334788999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.2e-34  Score=290.12  Aligned_cols=261  Identities=21%  Similarity=0.235  Sum_probs=199.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC-CcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|+.++.||.|.-|+||+++..+ +..+|+|++....   .........|-+||+.++||.+++||+.+..        
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet--------  148 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFET--------  148 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeec--------
Confidence            346667889999999999999654 6899999998543   3445667789999999999999999999876        


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....|+|||||+||+|..+.++. +...++...+..++.+|.-||+|||-   .|||.|||||+||||.++|++-|+||-
T Consensus       149 ~~~~cl~meyCpGGdL~~LrqkQ-p~~~fse~~aRFYaAEvl~ALEYLHm---lGivYRDLKPENILvredGHIMLsDFD  224 (459)
T KOG0610|consen  149 DKYSCLVMEYCPGGDLHSLRQKQ-PGKRFSESAARFYAAEVLLALEYLHM---LGIVYRDLKPENILVREDGHIMLSDFD  224 (459)
T ss_pred             cceeEEEEecCCCccHHHHHhhC-CCCccchhhHHHHHHHHHHHHHHHHh---hceeeccCCcceeEEecCCcEEeeecc
Confidence            34899999999999999888754 45679999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcc-----------------------c---CCC------------------CCcccccceeeecCCccee
Q 044236          596 ISIIMEEHEKLEA-----------------------K---GEG------------------PKARYGFLFICRTSAENVV  631 (747)
Q Consensus       596 la~~~~~~~~~~~-----------------------~---~~~------------------~~~~~~~~~~~~~~~~~~~  631 (747)
                      |+.......+...                       .   ...                  .........+.||-.|.||
T Consensus       225 LS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAP  304 (459)
T KOG0610|consen  225 LSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAP  304 (459)
T ss_pred             ccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccc
Confidence            9854321100000                       0   000                  0000112235788899999


Q ss_pred             eeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHcc
Q 044236          632 IVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCI  710 (747)
Q Consensus       632 e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl  710 (747)
                      |++.+..-+.++|+|+|||++|||+.|..||..... ..+..+...          ++.. ++ .++.+..+.+|+.+.|
T Consensus       305 EvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~----------~l~F-p~-~~~vs~~akDLIr~LL  372 (459)
T KOG0610|consen  305 EVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQ----------PLKF-PE-EPEVSSAAKDLIRKLL  372 (459)
T ss_pred             eeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcC----------CCcC-CC-CCcchhHHHHHHHHHh
Confidence            999999999999999999999999999999975442 223222211          0111 11 1245566899999999


Q ss_pred             CCCCCCCCC----HHHHH
Q 044236          711 CPEPSSRPS----FEDVL  724 (747)
Q Consensus       711 ~~dP~~RPs----~~evl  724 (747)
                      ..||.+|--    +.||-
T Consensus       373 vKdP~kRlg~~rGA~eIK  390 (459)
T KOG0610|consen  373 VKDPSKRLGSKRGAAEIK  390 (459)
T ss_pred             ccChhhhhccccchHHhh
Confidence            999999987    66664

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=8e-34  Score=293.50  Aligned_cols=254  Identities=19%  Similarity=0.354  Sum_probs=194.2

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|+..+.||+|+||.||+|.. .+++.||+|.++....  ...+.+.+|++++++++|+||+++++++...        +
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--------~   72 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHR--------E   72 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecC--------C
Confidence            477889999999999999985 4689999999875433  3567889999999999999999999987653        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++|+||+++++|.+++...   ..+++..+..++.|+++||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~kl~d~g~~  146 (264)
T cd06626          73 KVYIFMEYCSGGTLEELLEHG---RILDEHVIRVYTLQLLEGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCA  146 (264)
T ss_pred             EEEEEEecCCCCcHHHHHhhc---CCCChHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEcccccc
Confidence            789999999999999998753   347889999999999999999999   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC---CCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR---TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      ............        ......+...|.+||.+....   ++.++|||||||++||+++|..||...+....... 
T Consensus       147 ~~~~~~~~~~~~--------~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~-  217 (264)
T cd06626         147 VKLKNNTTTMGE--------EVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMF-  217 (264)
T ss_pred             cccCCCCCcccc--------cccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHH-
Confidence            765432211100        000123445678888887665   78999999999999999999999864421111111 


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .... ..     .+.+...  ......+.+++.+||+.+|.+|||+.|++.
T Consensus       218 ~~~~-~~-----~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         218 HVGA-GH-----KPPIPDS--LQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             HHhc-CC-----CCCCCcc--cccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            1110 00     1111111  112344788999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-34  Score=326.33  Aligned_cols=258  Identities=21%  Similarity=0.356  Sum_probs=199.3

Q ss_pred             hCCCccccccCCCCeeEEEEEeC----C----CcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE----N----GTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESG  509 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~----~----g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~  509 (747)
                      ++.++.+.+|+|.||.|++|...    .    ...||||.++.. ...+.+.+..|+++|+.+ +|+|||.++|+|... 
T Consensus       296 ~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~-  374 (609)
T KOG0200|consen  296 ENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQD-  374 (609)
T ss_pred             hhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccC-
Confidence            34455568999999999999742    1    457999998743 335668899999999998 599999999999873 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCC-------C----C--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENC-------P----E--NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------~----~--~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                             ...++|+||++.|+|.++++.++       .    .  ..++..+.+.++.|||.||+||++   .++|||||
T Consensus       375 -------~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~---~~~vHRDL  444 (609)
T KOG0200|consen  375 -------GPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLAS---VPCVHRDL  444 (609)
T ss_pred             -------CceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhh---CCccchhh
Confidence                   37899999999999999998754       0    0  238889999999999999999999   78999999


Q ss_pred             CCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHh
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ell  656 (747)
                      .++|||+..+..+||+|||+||.......+......  ++   +    ...|||||.+....|+.|+|||||||+|||++
T Consensus       445 AaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~--~~---L----P~kWmApEsl~~~~ft~kSDVWSfGI~L~Eif  515 (609)
T KOG0200|consen  445 AARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSA--GT---L----PVKWMAPESLFDRVFTSKSDVWSFGILLWEIF  515 (609)
T ss_pred             hhhhEEecCCCEEEEccccceeccCCCCceEecCCC--Cc---c----ceeecCHHHhccCcccccchhhHHHHHHHHHh
Confidence            999999999999999999999865544333221110  00   0    11378889898899999999999999999999


Q ss_pred             h-CCCCCCCCh--hhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          657 V-GPIVTGKGE--AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       657 t-g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      | |..|+..-.  .+... ...   ...+         .+-|..+..++.++|+.||+.+|++||++.|+++.++..
T Consensus       516 sLG~~PYp~~~~~~~l~~-~l~---~G~r---------~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~  579 (609)
T KOG0200|consen  516 TLGGTPYPGIPPTEELLE-FLK---EGNR---------MEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKH  579 (609)
T ss_pred             hCCCCCCCCCCcHHHHHH-HHh---cCCC---------CCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence            9 477776422  22221 111   1111         112333445589999999999999999999999999874

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=306.78  Aligned_cols=250  Identities=21%  Similarity=0.282  Sum_probs=201.2

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ....|.+...||+|.|++|..|+ ..++..||||.++...  ....+.+.+|+++|..++|||||+++.+....      
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~------  127 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETE------  127 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeec------
Confidence            45678999999999999999998 4569999999997532  33445689999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ..+|+||||+.+|.+++++.++   +.+...+...++.|+.+|++|||+   +.|||||||++|||||.+.++||+||
T Consensus       128 --~~lylV~eya~~ge~~~yl~~~---gr~~e~~ar~~F~q~vsaveYcH~---k~ivHrdLk~eNilL~~~mnikIaDf  199 (596)
T KOG0586|consen  128 --ATLYLVMEYASGGELFDYLVKH---GRMKEKEARAKFRQIVSAVEYCHS---KNIVHRDLKAENILLDENMNIKIADF  199 (596)
T ss_pred             --ceeEEEEEeccCchhHHHHHhc---ccchhhhhhhhhHHHHHHHHHHhh---cceeccccchhhcccccccceeeecc
Confidence              4899999999999999999875   335568888999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      |++..........             .+|+.++|.|||++.+..| ++++|+||+||++|-|+.|..||+......+..-
T Consensus       200 gfS~~~~~~~~lq-------------t~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~r  266 (596)
T KOG0586|consen  200 GFSTFFDYGLMLQ-------------TFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPR  266 (596)
T ss_pred             ccceeeccccccc-------------ccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccch
Confidence            9997765333221             2578889999999988877 5899999999999999999999986553332211


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .-           ...+.  .+.-...++.+++.+.+..+|.+|+++++|.+.-
T Consensus       267 vl-----------~gk~r--Ip~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~  307 (596)
T KOG0586|consen  267 VL-----------RGKYR--IPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDR  307 (596)
T ss_pred             he-----------eeeec--ccceeechhHHHHHHhhccCccccCCHHHhhhhc
Confidence            10           00000  0111122367888899999999999999998743

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.2e-34  Score=296.63  Aligned_cols=259  Identities=22%  Similarity=0.321  Sum_probs=196.3

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++++|++.+.||+|+||.||+|.. .+++.+|+|++..... ..+.+.+|+++++++ +|+||+++++++......  ..
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~--~~   80 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP--GN   80 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCC--Cc
Confidence            568899999999999999999995 4688999999875433 346789999999999 699999999999764310  12


Q ss_pred             CceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      ....++||||+++++|.++++... ....+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.+||+||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~~l~p~ni~~~~~~~~~l~d~  157 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE---NKVIHRDIKGQNILLTKNAEVKLVDF  157 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEEccCCeEEECCC
Confidence            457899999999999999886431 13468999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----cCCCcCCceeehhHHHHHHhhCCCCCCCChh-h
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-F  668 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~  668 (747)
                      |++...........            ...++..|++||.+..     ..++.++|||||||++|||++|..|+..... .
T Consensus       158 ~~~~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~  225 (275)
T cd06608         158 GVSAQLDSTLGRRN------------TFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMR  225 (275)
T ss_pred             ccceecccchhhhc------------CccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHH
Confidence            99865432211100            1124456777876643     3467899999999999999999999864322 1


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....+..   . ..     +..  ..+......+.+++.+||..||.+|||+.|+++
T Consensus       226 ~~~~~~~---~-~~-----~~~--~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         226 ALFKIPR---N-PP-----PTL--KSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             HHHHhhc---c-CC-----CCC--CchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            1111111   0 00     111  112223455889999999999999999999985

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=4.3e-34  Score=300.22  Aligned_cols=262  Identities=18%  Similarity=0.172  Sum_probs=188.6

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++++|.+.+.||+|+||.||+|.. .+|+.||+|.+.... ......+.+|++++++++|+||+++++++...       
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~-------   75 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTK-------   75 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecC-------
Confidence            357899999999999999999984 568899999987433 22234677899999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+. +++.+++...  ...+.+..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        76 -~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg  148 (291)
T cd07870          76 -ETLTFVFEYMH-TDLAQYMIQH--PGGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDLKPQNLLISYLGELKLADFG  148 (291)
T ss_pred             -CeEEEEEeccc-CCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEEcCCCcEEEeccc
Confidence             47899999996 6777766543  2357888889999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh--hhHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA--FLLNE  672 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~--~~~~~  672 (747)
                      +++..........            ...++..|++||.+.. ..++.++|||||||++|||++|+.||.....  ..+..
T Consensus       149 ~~~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~  216 (291)
T cd07870         149 LARAKSIPSQTYS------------SEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEK  216 (291)
T ss_pred             cccccCCCCCCCC------------CccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHH
Confidence            9865322111000            0123456788888765 3578899999999999999999999864332  11111


Q ss_pred             HHhccCcC-------------Ccccccc---ccccCCCC--HHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          673 MASFGSQD-------------GRRRIVD---PVVLTTCS--QESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       673 ~~~~~~~~-------------~~~~~~d---~~~~~~~~--~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ........             .......   +.......  ......+.+++.+|++.||++|||+.|++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         217 IWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             HHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence            11100000             0000000   00000000  011345788999999999999999999875

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=6.8e-34  Score=297.90  Aligned_cols=254  Identities=19%  Similarity=0.327  Sum_probs=199.2

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++.|+..+.||+|+||.||+|... +++.||+|+++.... ..+.+.+|++++++++|+||+++++++...        
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------   87 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVG--------   87 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEEC--------
Confidence            4567888899999999999999965 688999999975443 456788999999999999999999998773        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++++|.+++....  ..+++..+..++.|++.||+|||+   .+|+|+||||+||+++.++.+||+|||+
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~lH~---~gi~H~dl~p~ni~i~~~~~~~l~d~~~  162 (286)
T cd06614          88 DELWVVMEYMDGGSLTDIITQNF--VRMNEPQIAYVCREVLQGLEYLHS---QNVIHRDIKSDNILLSKDGSVKLADFGF  162 (286)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCChhhEEEcCCCCEEECccch
Confidence            47899999999999999998642  369999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      +..........            ....++..|++||.+....++.++|||||||++|||++|+.|+..............
T Consensus       163 ~~~~~~~~~~~------------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~  230 (286)
T cd06614         163 AAQLTKEKSKR------------NSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITT  230 (286)
T ss_pred             hhhhccchhhh------------ccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence            85443221100            011234567788888778889999999999999999999999875443322111111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                        . ......+       +......+.+++.+||+.+|.+||++.+|+.+-
T Consensus       231 --~-~~~~~~~-------~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~  271 (286)
T cd06614         231 --K-GIPPLKN-------PEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHP  271 (286)
T ss_pred             --c-CCCCCcc-------hhhCCHHHHHHHHHHhccChhhCcCHHHHhhCh
Confidence              0 0001001       111234588999999999999999999998644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=3.4e-34  Score=302.03  Aligned_cols=260  Identities=17%  Similarity=0.237  Sum_probs=190.6

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchh-----cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKY-----SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      +|+..+.||+|+||.||+|.. .+|+.||||+++.....     ....+..|++++++++|+||+++++++...      
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~------   74 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHK------   74 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecC------
Confidence            477788999999999999995 46899999999754322     234567899999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..++||||+ +|+|.+++....  ..+++..+..++.||++||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        75 --~~~~lv~e~~-~~~L~~~i~~~~--~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nill~~~~~~~l~df  146 (298)
T cd07841          75 --SNINLVFEFM-ETDLEKVIKDKS--IVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADF  146 (298)
T ss_pred             --CEEEEEEccc-CCCHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCChhhEEEcCCCCEEEccc
Confidence              4789999999 899999997542  368999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNE  672 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~  672 (747)
                      |+++..........            ...++..|.+||.+.. ..++.++|||||||++|||++|.+|+..... .....
T Consensus       147 g~~~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~  214 (298)
T cd07841         147 GLARSFGSPNRKMT------------HQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGK  214 (298)
T ss_pred             eeeeeccCCCcccc------------ccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHH
Confidence            99876543211000            0112335677776643 4578899999999999999999777654322 22222


Q ss_pred             HHhccCcC---------Ccccccccccc-----CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQD---------GRRRIVDPVVL-----TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~---------~~~~~~d~~~~-----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........         ...........     ..........+.+++.+||+.+|++|||+.|++.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         215 IFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             HHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            11111000         00000000000     01112234568899999999999999999999974

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=7.1e-34  Score=297.54  Aligned_cols=248  Identities=18%  Similarity=0.285  Sum_probs=192.6

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      |...+.||+|++|.||++.. .+++.+|+|+++.......+.+.+|+.+++.++||||+++++++...        +..+
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~--------~~~~   92 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVG--------DELW   92 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcC--------CeEE
Confidence            44457899999999999984 57899999998755555556788999999999999999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +|+||+++++|.+++..    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||.+...
T Consensus        93 ~v~e~~~~~~L~~~~~~----~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~  165 (285)
T cd06648          93 VVMEFLEGGALTDIVTH----TRMNEEQIATVCLAVLKALSFLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQV  165 (285)
T ss_pred             EEEeccCCCCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChhhEEEcCCCcEEEcccccchhh
Confidence            99999999999998865    348899999999999999999999   78999999999999999999999999987644


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      .......            ....++..|++||......++.++|||||||++|||++|+.|+................  
T Consensus       166 ~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~--  231 (285)
T cd06648         166 SKEVPRR------------KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNL--  231 (285)
T ss_pred             ccCCccc------------ccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcC--
Confidence            3211100            01124456788888877789999999999999999999999886543322111111110  


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                            .+...  ........+.+++.+||+.+|++||++.++++.
T Consensus       232 ------~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  269 (285)
T cd06648         232 ------PPKLK--NLHKVSPRLRSFLDRMLVRDPAQRATAAELLNH  269 (285)
T ss_pred             ------CCCCc--ccccCCHHHHHHHHHHcccChhhCcCHHHHccC
Confidence                  01100  011123458999999999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=6.3e-34  Score=298.75  Aligned_cols=244  Identities=20%  Similarity=0.287  Sum_probs=193.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+++. .+++.||+|++....   ......+.+|++++++++||||+++++++...       
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-------   73 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDD-------   73 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcC-------
Confidence            3688889999999999999985 468999999987432   23346788999999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        74 -~~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qil~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~dfg  146 (290)
T cd05580          74 -SNLYLVMEYVPGGELFSHLRKS---GRFPEPVARFYAAQVVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFG  146 (290)
T ss_pred             -CeEEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEeeCC
Confidence             4789999999999999998753   468999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++.......               ...++..|++||.+.....+.++||||||+++|||++|+.|+...+.........
T Consensus       147 ~~~~~~~~~~---------------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~  211 (290)
T cd05580         147 FAKRVKGRTY---------------TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKIL  211 (290)
T ss_pred             CccccCCCCC---------------CCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence            9876533210               1234456788888877788899999999999999999999987554322211111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      .   .      ...+....    ...+.+++.+||+.||.+||     +++|+++
T Consensus       212 ~---~------~~~~~~~~----~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~  253 (290)
T cd05580         212 E---G------KVRFPSFF----SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKN  253 (290)
T ss_pred             c---C------CccCCccC----CHHHHHHHHHHccCCHHHccCcccCCHHHHHc
Confidence            0   0      01111122    34478899999999999999     7777764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=6e-34  Score=299.13  Aligned_cols=260  Identities=18%  Similarity=0.220  Sum_probs=188.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|+..+.||+|+||.||+|+. .+++.||||.+..... .....+.+|++++++++|+||+++++++...        .
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~   76 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTK--------K   76 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecC--------C
Confidence            5788899999999999999995 4689999999874322 2234567899999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++ +|.+++...  ...+++.....++.|+++||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        77 ~~~lv~e~~~~-~L~~~~~~~--~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~  150 (291)
T cd07844          77 TLTLVFEYLDT-DLKQYMDDC--GGGLSMHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKPQNLLISERGELKLADFGLA  150 (291)
T ss_pred             eEEEEEecCCC-CHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCHHHEEEcCCCCEEECccccc
Confidence            78999999985 999888654  2368899999999999999999999   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCCh--hhhHHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGE--AFLLNEMA  674 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~--~~~~~~~~  674 (747)
                      +.........     ..       ..++..|.+||.+.. ..++.++|||||||++|||++|+.||....  ...+..+.
T Consensus       151 ~~~~~~~~~~-----~~-------~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~  218 (291)
T cd07844         151 RAKSVPSKTY-----SN-------EVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIF  218 (291)
T ss_pred             cccCCCCccc-----cc-------cccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHH
Confidence            6432111000     00       012345677887654 457889999999999999999998886443  11121111


Q ss_pred             hccCcC---Cccc-------------ccc-ccccCCCC-HHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQD---GRRR-------------IVD-PVVLTTCS-QESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~---~~~~-------------~~d-~~~~~~~~-~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......   ....             ... ..+....+ ......+.+++.+|++.+|++|||+.|++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         219 RVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             HhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence            111000   0000             000 00000000 001145788999999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.1e-34  Score=295.86  Aligned_cols=248  Identities=19%  Similarity=0.371  Sum_probs=191.5

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCC---CCCcceeeeeeeccCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQ---HPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~---H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .|+..+.||+|+||.||+|.. .+++.||||.++.. ......++.+|++++++++   ||||++++++|...       
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~-------   74 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKG-------   74 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeC-------
Confidence            467788999999999999994 67899999998643 2334567889999999987   99999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++++|.++++.    ..+++.....++.|++.||.|||+   .+|+||||+|+||+++.++.++|+|||
T Consensus        75 -~~~~lv~e~~~~~~L~~~~~~----~~l~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~p~ni~i~~~~~~~l~dfg  146 (277)
T cd06917          75 -PRLWIIMEYAEGGSVRTLMKA----GPIAEKYISVIIREVLVALKYIHK---VGVIHRDIKAANILVTNTGNVKLCDFG  146 (277)
T ss_pred             -CEEEEEEecCCCCcHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHHEEEcCCCCEEEccCC
Confidence             478999999999999998864    268999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      ++...........            ...++..|.+||.+.. ..++.++|||||||++|||++|..|+.......  ...
T Consensus       147 ~~~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~--~~~  212 (277)
T cd06917         147 VAALLNQNSSKRS------------TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFR--AMM  212 (277)
T ss_pred             ceeecCCCccccc------------cccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhh--hhh
Confidence            9876543221100            1123445778887654 346889999999999999999999997543221  111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ... ..     ..+.+...   .....+.+++.+||+.||++||++.|++++
T Consensus       213 ~~~-~~-----~~~~~~~~---~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         213 LIP-KS-----KPPRLEDN---GYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             ccc-cC-----CCCCCCcc---cCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            100 00     11111111   123458899999999999999999999874

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=5.9e-34  Score=299.48  Aligned_cols=263  Identities=20%  Similarity=0.253  Sum_probs=192.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|+..+.||+|+||.||+|+.. +++.+|+|.++....  .....+.+|++++++++||||+++++++....      
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~------   77 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSN------   77 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecC------
Confidence            357888899999999999999964 689999999974332  22345678999999999999999999987632      


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+++ +|.+++...  ...+++.....++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        78 ~~~~~lv~e~~~~-~L~~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~~l~d~g  151 (293)
T cd07843          78 LDKIYMVMEYVEH-DLKSLMETM--KQPFLQSEVKCLMLQLLSGVAHLHD---NWILHRDLKTSNLLLNNRGILKICDFG  151 (293)
T ss_pred             CCcEEEEehhcCc-CHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCcEEEeecC
Confidence            2579999999974 898888653  2358999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~  673 (747)
                      +++.........            ....++..|++||.+... .++.++|||||||++|||++|..|+...... ....+
T Consensus       152 ~~~~~~~~~~~~------------~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~  219 (293)
T cd07843         152 LAREYGSPLKPY------------TQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKI  219 (293)
T ss_pred             ceeeccCCcccc------------ccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence            987654321100            001234567888877544 4688999999999999999998888643321 11111


Q ss_pred             HhccCc-----------------CCccccccccccCCCCHH-HHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQ-----------------DGRRRIVDPVVLTTCSQE-SLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~-----------------~~~~~~~d~~~~~~~~~~-~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......                 ..........+...++.. ....+.+++.+||+.+|++|||+.|++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         220 FKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             HHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence            110000                 000000000111112221 2455889999999999999999999985

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=5.9e-34  Score=293.25  Aligned_cols=250  Identities=19%  Similarity=0.316  Sum_probs=192.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|...+.||+|+||.||+|.. .+|..||+|.+....  ....+.+.+|++++++++|+||+++++++...        .
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~--------~   72 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQEN--------G   72 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccC--------C
Confidence            477889999999999999995 468899999987432  23445778999999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-cEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGl  596 (747)
                      ..++||||+++++|.+++.... ...++|..+..++.|+++||.|||+   .+++|+||||+||+++.++ .+||+|||.
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~~~l~d~~~  148 (257)
T cd08225          73 RLFIVMEYCDGGDLMKRINRQR-GVLFSEDQILSWFVQISLGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGI  148 (257)
T ss_pred             eEEEEEecCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEcCCCCeEEeccccc
Confidence            7899999999999999886532 3358999999999999999999998   7899999999999999875 579999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      +...........            ...++..|.+||......++.++|||||||++|||++|..|+........  ....
T Consensus       149 ~~~~~~~~~~~~------------~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~--~~~~  214 (257)
T cd08225         149 ARQLNDSMELAY------------TCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQL--VLKI  214 (257)
T ss_pred             chhccCCccccc------------ccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHH--HHHH
Confidence            866543211100            01234567888888777889999999999999999999999864432211  1111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      . ....    .+ .    .......+.+++.+||..+|++|||+.|+++.
T Consensus       215 ~-~~~~----~~-~----~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         215 C-QGYF----AP-I----SPNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             h-cccC----CC-C----CCCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            1 1110    11 1    11222348899999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=6.7e-35  Score=300.80  Aligned_cols=252  Identities=25%  Similarity=0.361  Sum_probs=190.6

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcH--HHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSI--QNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~--~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |+..+.||+|+||.||+++. .+++.+|+|.+........  ....+|+.++++++||||+++++++...        ..
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--------~~   72 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDD--------NY   72 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEES--------SE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccc--------cc
Confidence            45678999999999999995 4577999999986543322  2345699999999999999999999873        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++++|.+++..   ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.++|+|||.+.
T Consensus        73 ~~~v~~~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~  146 (260)
T PF00069_consen   73 LYIVMEYCPGGSLQDYLQK---NKPLSEEEILKIAYQILEALAYLHS---KGIVHRDIKPENILLDENGEVKLIDFGSSV  146 (260)
T ss_dssp             EEEEEEEETTEBHHHHHHH---HSSBBHHHHHHHHHHHHHHHHHHHH---TTEEESSBSGGGEEESTTSEEEESSGTTTE
T ss_pred             ccccccccccccccccccc---ccccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            8999999999999999973   3458999999999999999999999   899999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      .........            ....++..|.+||... ...++.++||||+|+++|||++|..|+...............
T Consensus       147 ~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~  214 (260)
T PF00069_consen  147 KLSENNENF------------NPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKI  214 (260)
T ss_dssp             ESTSTTSEB------------SSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHH
T ss_pred             ccccccccc------------ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhc
Confidence            531111100            0112345678888877 778899999999999999999999998865211111111100


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ...   .. ....  .........+.+++.+||+.||++||++.++++
T Consensus       215 ~~~---~~-~~~~--~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  215 LKR---PL-PSSS--QQSREKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             HHT---HH-HHHT--TSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             ccc---cc-cccc--cccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000   00 0000  000011255899999999999999999999985

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=5.6e-34  Score=293.75  Aligned_cols=247  Identities=21%  Similarity=0.276  Sum_probs=194.0

Q ss_pred             CCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      +|++.+.||.|+||.||+|+.. +++.||+|.+....   ....+.+.+|++++++++||||+++++++..        .
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--------~   72 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQD--------E   72 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcC--------C
Confidence            4788899999999999999954 68999999997432   2345788999999999999999999988865        3


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++++|.+++...   ..+++.....++.|+++||.|||+   .+++|+||||+||+++.++.++|+|||+
T Consensus        73 ~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~l~d~~~  146 (258)
T cd05578          73 ENMYLVVDLLLGGDLRYHLSQK---VKFSEEQVKFWICEIVLALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNI  146 (258)
T ss_pred             CeEEEEEeCCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEEcCCCCEEEeeccc
Confidence            4799999999999999998753   468899999999999999999998   7899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      +..........             ...+...|.+||.+....++.++||||||+++|||++|..|+.........++...
T Consensus       147 ~~~~~~~~~~~-------------~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~  213 (258)
T cd05578         147 ATKVTPDTLTT-------------STSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAK  213 (258)
T ss_pred             ccccCCCcccc-------------ccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHH
Confidence            86543221100             01234467788888888889999999999999999999999875543222222221


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH--HHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF--EDVL  724 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~--~evl  724 (747)
                      ... .     .+.    .+......+.+++.+||+.||.+||++  +|++
T Consensus       214 ~~~-~-----~~~----~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         214 QET-A-----DVL----YPATWSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             hcc-c-----ccc----CcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence            111 0     011    122233558899999999999999999  6654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=8.2e-34  Score=297.19  Aligned_cols=261  Identities=20%  Similarity=0.263  Sum_probs=194.2

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+|+. .+|+.||||++....  ......+.+|+.++++++||||+++++++...        .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--------~   72 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHG--------S   72 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecC--------C
Confidence            477889999999999999995 568999999987543  23346788999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+ +++|.+++...  ...+++..+..++.|+++||+|||+   .+|+|+||||+||+++.++.++|+|||++
T Consensus        73 ~~~~v~e~~-~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~~~~~~~~~l~dfg~~  146 (286)
T cd07832          73 GFVLVMEYM-PSDLSEVLRDE--ERPLPEAQVKSYMRMLLKGVAYMHA---NGIMHRDLKPANLLISADGVLKIADFGLA  146 (286)
T ss_pred             eeEEEeccc-CCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCHHHEEEcCCCcEEEeeeeec
Confidence            789999999 99999998654  3568999999999999999999999   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~~  675 (747)
                      +........           .+....++..|++||.+... .++.++||||+||++|||+||.+|+.... .........
T Consensus       147 ~~~~~~~~~-----------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~  215 (286)
T cd07832         147 RLFSEEEPR-----------LYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFR  215 (286)
T ss_pred             ccccCCCCC-----------ccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHH
Confidence            765432110           00012345567888877544 46889999999999999999977775432 222222211


Q ss_pred             ccCcCCc------------ccccccc----ccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQDGR------------RRIVDPV----VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~~~------------~~~~d~~----~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......            ..+..+.    ......++....+.+++.+|++.+|.+|||+++++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         216 TLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             HcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            1110000            0000000    0000111234568999999999999999999999864

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=1.5e-33  Score=299.71  Aligned_cols=245  Identities=24%  Similarity=0.337  Sum_probs=188.2

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      |+..+.||+|+||.||+|+. .+++.||+|++....   ......+.+|++++++++|||+++++++|...        .
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--------~   98 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLRE--------H   98 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC--------C
Confidence            66678899999999999994 568999999987432   22345788899999999999999999998763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||++ |++.+++...  ...++|..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        99 ~~~lv~e~~~-g~l~~~~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~---~~i~H~dL~p~Nil~~~~~~~kl~dfg~~  172 (317)
T cd06635          99 TAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSA  172 (317)
T ss_pred             eEEEEEeCCC-CCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcccEEECCCCCEEEecCCCc
Confidence            7899999997 5777776543  3458999999999999999999999   88999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEM  673 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~  673 (747)
                      ........                ..++..|.+||.+.   ...++.++|||||||++|||++|+.|+...... ....+
T Consensus       173 ~~~~~~~~----------------~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~  236 (317)
T cd06635         173 SIASPANS----------------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI  236 (317)
T ss_pred             cccCCccc----------------ccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHH
Confidence            64332110                12334577788763   456889999999999999999999887643321 12211


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      .....         +..   ........+.+++.+||+.+|.+||++.+|++.+.
T Consensus       237 ~~~~~---------~~~---~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~  279 (317)
T cd06635         237 AQNES---------PTL---QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMF  279 (317)
T ss_pred             HhccC---------CCC---CCccccHHHHHHHHHHccCCcccCcCHHHHHhChh
Confidence            11100         000   01123345889999999999999999999998654

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=8.4e-34  Score=293.60  Aligned_cols=252  Identities=19%  Similarity=0.299  Sum_probs=195.5

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|+..+.||+|+||.||++... +++.||+|.+.... ....+.+.+|++++++++||||+++++++...        .
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--------~   72 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNN--------G   72 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecC--------C
Confidence            35777889999999999999954 68999999987542 34456788999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.+++...  ...+++.....++.|++.||+|||+.  .+++||||||+||+++.++.+||+|||.+
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~--~~i~H~dl~~~ni~~~~~~~~~l~d~g~~  148 (265)
T cd06605          73 DISICMEYMDGGSLDKILKEV--QGRIPERILGKIAVAVLKGLTYLHEK--HKIIHRDVKPSNILVNSRGQIKLCDFGVS  148 (265)
T ss_pred             EEEEEEEecCCCcHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHHHcCC--CCeecCCCCHHHEEECCCCCEEEeecccc
Confidence            799999999999999998754  25688899999999999999999983  47899999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh---hhhHHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE---AFLLNEMA  674 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~---~~~~~~~~  674 (747)
                      ..........              ..++..|++||.+....++.++|||||||++|||++|+.|+....   ......+.
T Consensus       149 ~~~~~~~~~~--------------~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~  214 (265)
T cd06605         149 GQLVNSLAKT--------------FVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQ  214 (265)
T ss_pred             hhhHHHHhhc--------------ccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHH
Confidence            6543221110              223456778888888889999999999999999999998886432   11111111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......      .+.....   .....+.+++.+||..+|++|||+.|++.+
T Consensus       215 ~~~~~~------~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         215 YIVNEP------PPRLPSG---KFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             HHhcCC------CCCCChh---hcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            111110      0111111   134458899999999999999999999854

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=7.2e-34  Score=297.92  Aligned_cols=261  Identities=18%  Similarity=0.236  Sum_probs=193.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++.+.||+|+||.||+|.. .+++.||||+++..  .....+.+.+|++++++++|+||+++++++...        
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------   72 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRK--------   72 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEEC--------
Confidence            3688899999999999999985 46889999988643  233346788999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      +..++||||++++.+..+...   ...+++..+..++.||+.||+|||+   .+++||||||+||+++.++.+||+|||+
T Consensus        73 ~~~~iv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~ni~~~~~~~~kl~d~g~  146 (288)
T cd07833          73 GRLYLVFEYVERTLLELLEAS---PGGLPPDAVRSYIWQLLQAIAYCHS---HNIIHRDIKPENILVSESGVLKLCDFGF  146 (288)
T ss_pred             CEEEEEEecCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEEeeec
Confidence            478999999998777665543   3458999999999999999999999   7899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~  674 (747)
                      ++..........           ....+...|++||.+... .++.++|||||||++|||++|+.|+..... +.+....
T Consensus       147 ~~~~~~~~~~~~-----------~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~  215 (288)
T cd07833         147 ARALRARPASPL-----------TDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQ  215 (288)
T ss_pred             ccccCCCccccc-----------cCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            876543221000           011234567888988777 789999999999999999999988864322 2111111


Q ss_pred             hccC------------cCCcc--cccccc----ccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGS------------QDGRR--RIVDPV----VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~------------~~~~~--~~~d~~----~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....            .....  +..+..    ....++.....++.+++.+||..+|++|||++++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         216 KCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             HHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            1000            00000  000000    000112223566899999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=5.4e-34  Score=298.99  Aligned_cols=254  Identities=20%  Similarity=0.286  Sum_probs=187.5

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|...+.||+|+||.||+++. .+++.||||.+.... ......+.+|+.++.++. |+||+++++++...        .
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~--------~   76 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFRE--------G   76 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecC--------C
Confidence            455667899999999999984 568999999987432 234567889999999996 99999999988763        3


Q ss_pred             eEEEEEeccCCCCccccc---ccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          518 KVFLVYEYIPNGSYRAHL---SENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l---~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      ..+++|||+.. ++.++.   ... ....+++.....++.|++.||+|||+.  .+|+||||||+||+++.++.+||+||
T Consensus        77 ~~~~~~e~~~~-~l~~l~~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~df  152 (288)
T cd06616          77 DCWICMELMDI-SLDKFYKYVYEV-LKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDF  152 (288)
T ss_pred             cEEEEEecccC-CHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeec
Confidence            67999999864 554432   211 134689999999999999999999973  47999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc---CCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ---RTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      |+++.........             ...++..|.+||.+...   .++.++|||||||++|||++|+.||..... ...
T Consensus       153 g~~~~~~~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~  218 (288)
T cd06616         153 GISGQLVDSIAKT-------------RDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS-VFD  218 (288)
T ss_pred             chhHHhccCCccc-------------cccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch-HHH
Confidence            9986543211100             01234567888887665   688999999999999999999999865431 111


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+.......      .+.+...........+.+++.+||+.+|++|||+.+|++.
T Consensus       219 ~~~~~~~~~------~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         219 QLTQVVKGD------PPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             HHhhhcCCC------CCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            221111110      1111111112334458899999999999999999999874

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-33  Score=301.04  Aligned_cols=262  Identities=21%  Similarity=0.273  Sum_probs=196.1

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch---hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK---YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|+..+.||+|+||.||+|.. .+++.||+|.+.....   ...+.+..|+++++.++||||+++++++...       
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-------   73 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTE-------   73 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecC-------
Confidence            3688889999999999999995 4589999999875332   2456788999999999999999999988763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++++|.+++... ....+++..+..++.|++.||+|||+   .+++||||||+||+++.++.++|+|||
T Consensus        74 -~~~~lv~e~~~~~~L~~~~~~~-~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg  148 (316)
T cd05574          74 -TYLCLVMDYCPGGELFRLLQRQ-PGKCLSEEVARFYAAEVLLALEYLHL---LGIVYRDLKPENILLHESGHIMLSDFD  148 (316)
T ss_pred             -CEEEEEEEecCCCCHHHHHHhC-CCCccCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChHHeEEcCCCCEEEeecc
Confidence             4789999999999999998743 23568999999999999999999998   889999999999999999999999999


Q ss_pred             ccccccccchhcccC--CC---------------CCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC
Q 044236          596 ISIIMEEHEKLEAKG--EG---------------PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG  658 (747)
Q Consensus       596 la~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg  658 (747)
                      ++.............  ..               ...........++..|++||.+....++.++|||||||++|||++|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g  228 (316)
T cd05574         149 LSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYG  228 (316)
T ss_pred             hhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhC
Confidence            986543221110000  00               0000001112345678899998888899999999999999999999


Q ss_pred             CCCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC----HHHHHH
Q 044236          659 PIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS----FEDVLW  725 (747)
Q Consensus       659 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs----~~evl~  725 (747)
                      +.|+...+... ...+.   ...       .....  .......+.+++.+||+.||++|||    +.|++.
T Consensus       229 ~~pf~~~~~~~~~~~~~---~~~-------~~~~~--~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         229 TTPFKGSNRDETFSNIL---KKE-------VTFPG--SPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             CCCCCCCchHHHHHHHh---cCC-------ccCCC--ccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence            99986543221 11111   000       00000  1113445899999999999999999    666665

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-34  Score=276.35  Aligned_cols=248  Identities=21%  Similarity=0.329  Sum_probs=187.8

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .+.+..||.|..|.|++++. .+|..+|||.+... .+.+.+.+...+.++.+- ..|.||+.+|||...        ..
T Consensus        94 l~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n--------~d  165 (391)
T KOG0983|consen   94 LENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITN--------TD  165 (391)
T ss_pred             hhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeC--------ch
Confidence            34456799999999999994 56999999999754 344556666677766554 479999999999873        36


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      +++.||.|.. -+.++++.-  .+++++...-++...+.+||.||.+.  .+|||||+||+|||+|+.|++|+||||++-
T Consensus       166 V~IcMelMs~-C~ekLlkri--k~piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGIsG  240 (391)
T KOG0983|consen  166 VFICMELMST-CAEKLLKRI--KGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGISG  240 (391)
T ss_pred             HHHHHHHHHH-HHHHHHHHh--cCCchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeecccccc
Confidence            8899999854 555555532  45688887888999999999999985  579999999999999999999999999996


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeec---cCCCcCCceeehhHHHHHHhhCCCCCCCChh--hhHHHH
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI---QRTKLEDDVYNFGFILLESLVGPIVTGKGEA--FLLNEM  673 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~--~~~~~~  673 (747)
                      .+.++.....             .+|.++|||||.+.-   ..|+.++|||||||.++||+||+.||...+.  +.+..+
T Consensus       241 rlvdSkAhtr-------------sAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkv  307 (391)
T KOG0983|consen  241 RLVDSKAHTR-------------SAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKV  307 (391)
T ss_pred             eeeccccccc-------------ccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHH
Confidence            6655443322             245678999998864   4689999999999999999999999976332  223322


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..   .+      .|.++..  ...+..+.+++..|+..|+.+||...+++++
T Consensus       308 ln---~e------PP~L~~~--~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  308 LN---EE------PPLLPGH--MGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             Hh---cC------CCCCCcc--cCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence            22   11      0111111  1134458899999999999999999999863

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.9e-33  Score=290.67  Aligned_cols=253  Identities=19%  Similarity=0.294  Sum_probs=197.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++.+.+++|+||+++++++...        .
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~   72 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKE--------G   72 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccC--------C
Confidence            36888999999999999999954 599999999875433 4457889999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.+++...   ..+++..+..++.|+++|++|||+.  .+++||||+|+||+++.++.++|+|||++
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lh~~--~~~~H~~l~~~ni~~~~~~~~~l~df~~~  147 (264)
T cd06623          73 EISIVLEYMDGGSLADLLKKV---GKIPEPVLAYIARQILKGLDYLHTK--RHIIHRDIKPSNLLINSKGEVKIADFGIS  147 (264)
T ss_pred             eEEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHhcc--CCCccCCCCHHHEEECCCCCEEEccCccc
Confidence            789999999999999999753   4689999999999999999999973  47899999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~  676 (747)
                      +.........            ....+...|.+||......++.++||||||+++|||+||+.|+..... .........
T Consensus       148 ~~~~~~~~~~------------~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~  215 (264)
T cd06623         148 KVLENTLDQC------------NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAI  215 (264)
T ss_pred             eecccCCCcc------------cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHH
Confidence            7654322110            012345567888988888889999999999999999999999865431 111111111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .. .     ..+.....   ..+..+.+++.+||..+|++||++.|++++
T Consensus       216 ~~-~-----~~~~~~~~---~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         216 CD-G-----PPPSLPAE---EFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             hc-C-----CCCCCCcc---cCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            10 0     01111111   023458899999999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=8.5e-34  Score=296.80  Aligned_cols=261  Identities=18%  Similarity=0.233  Sum_probs=191.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +|+..+.||+|+||.||+|+. .+|+.||||+++... ......+.+|++++++++||||+++++++...        +.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~~   72 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTE--------NK   72 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeC--------Cc
Confidence            578889999999999999995 468999999987543 22345677899999999999999999999873        36


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++ +|.+++........+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+|++|||+++
T Consensus        73 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~  148 (284)
T cd07836          73 LMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLAR  148 (284)
T ss_pred             EEEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCcEEEeecchhh
Confidence            8999999985 888888654334568999999999999999999998   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~  676 (747)
                      ..........            ...++..|++||.+.. ..++.++|||||||++|||++|+.|+..... +........
T Consensus       149 ~~~~~~~~~~------------~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~  216 (284)
T cd07836         149 AFGIPVNTFS------------NEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRI  216 (284)
T ss_pred             hhcCCccccc------------cccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Confidence            5432111000            0122345777887654 3568899999999999999999988865432 222211111


Q ss_pred             cCcC---Ccc-----cccccccc-------CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          677 GSQD---GRR-----RIVDPVVL-------TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       677 ~~~~---~~~-----~~~d~~~~-------~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....   ...     ........       ....+.....+.+++.+|++.||.+||++.|+++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         217 MGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            1000   000     00000000       0011123455789999999999999999999975

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=2.2e-33  Score=297.53  Aligned_cols=273  Identities=14%  Similarity=0.216  Sum_probs=193.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||.+....  ......+.+|++++++++||||++++++|...+......
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            45789999999999999999985 568999999986432  222345678999999999999999999987644222223


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+.+ +|.+++...  ...+++.+...++.|++.||+|||+   .+++||||||+||+++.++.+||+|||
T Consensus        91 ~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg  164 (310)
T cd07865          91 KGSFYLVFEFCEH-DLAGLLSNK--NVKFTLSEIKKVMKMLLNGLYYIHR---NKILHRDMKAANILITKDGILKLADFG  164 (310)
T ss_pred             CceEEEEEcCCCc-CHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCCCcEEECcCC
Confidence            4567999999965 788777643  3358999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~  673 (747)
                      ++...........     ..   .....++..|++||.+... .++.++|||||||++|||+||..|+....... ...+
T Consensus       165 ~~~~~~~~~~~~~-----~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~  236 (310)
T cd07865         165 LARAFSLSKNSKP-----NR---YTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLI  236 (310)
T ss_pred             CcccccCCcccCC-----CC---ccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9976543221100     00   0011234567889876554 47889999999999999999998886543221 1111


Q ss_pred             HhccCc---CCccc-----cccc-cccCCC---------CHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQ---DGRRR-----IVDP-VVLTTC---------SQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~---~~~~~-----~~d~-~~~~~~---------~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......   +....     ..+. ......         +......+.+++.+||..||++|||+.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         237 SQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             HHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence            111100   00000     0000 000000         0011234678999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-34  Score=305.81  Aligned_cols=268  Identities=18%  Similarity=0.252  Sum_probs=194.0

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+ ..+|+.||||++... .......+.+|+.++++++||||+++++++....   ....
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~---~~~~   80 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPS---FESF   80 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeeccc---cccc
Confidence            4689999999999999999998 457899999998642 2334466788999999999999999999876532   1123


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++ +|.+++..    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        81 ~~~~lv~e~~~~-~l~~~~~~----~~l~~~~~~~i~~ql~~aL~~LH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~  152 (336)
T cd07849          81 NDVYIVQELMET-DLYKLIKT----QHLSNDHIQYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGL  152 (336)
T ss_pred             ceEEEEehhccc-CHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEECcccc
Confidence            468999999975 88777753    358999999999999999999999   7899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      ++..........         ......++..|+|||.+.. ..++.++|||||||++|||++|+.||...+.. ....+.
T Consensus       153 ~~~~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~  223 (336)
T cd07849         153 ARIADPEHDHTG---------FLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLIL  223 (336)
T ss_pred             eeeccccccccC---------CcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            875432211100         0011234566888997543 46889999999999999999999988654321 111111


Q ss_pred             hccCcCCc---ccccc-------------cccc-CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGR---RRIVD-------------PVVL-TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~---~~~~d-------------~~~~-~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........   ..+.+             +... ....+.....+.+++.+||+.+|++|||+.|++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         224 GVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             HHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            11110000   00000             0000 00001224458899999999999999999999976

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=1.3e-33  Score=302.55  Aligned_cols=276  Identities=14%  Similarity=0.187  Sum_probs=198.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++....  ......+.+|+.++++++||||+++++++....    ..
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~   79 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPG----AD   79 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccC----CC
Confidence            36788999999999999999984 569999999987432  234466778999999999999999999876532    12


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+. |+|.+++..   ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        80 ~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg  152 (334)
T cd07855          80 FKDVYVVMDLME-SDLHHIIHS---DQPLTEEHIRYFLYQLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIGDFG  152 (334)
T ss_pred             CceEEEEEehhh-hhHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEecccc
Confidence            357899999996 689888864   2348999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~  673 (747)
                      +++..........       .+ .....++..|.+||.+.. ..++.++|||||||++|||++|+.||...+.. .+..+
T Consensus       153 ~~~~~~~~~~~~~-------~~-~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~  224 (334)
T cd07855         153 MARGLSSSPTEHK-------YF-MTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLI  224 (334)
T ss_pred             cceeecccCcCCC-------cc-cccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHH
Confidence            9876533211100       00 001234456778887654 45889999999999999999999998654321 11111


Q ss_pred             HhccCcC-----------Cccccc---ccc--c-cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          674 ASFGSQD-----------GRRRIV---DPV--V-LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       674 ~~~~~~~-----------~~~~~~---d~~--~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .......           ......   ...  . .....+.....+.+++.+||+.+|.+||++.+++..--.....
T Consensus       225 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~  301 (334)
T cd07855         225 LSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYH  301 (334)
T ss_pred             HHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhcc
Confidence            1110000           000000   000  0 0001122345689999999999999999999999865544333

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.2e-33  Score=299.61  Aligned_cols=265  Identities=18%  Similarity=0.216  Sum_probs=193.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|+++....  .....+.+|++++++++|+||+++++++....      
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~------   79 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKH------   79 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCC------
Confidence            46799999999999999999995 5699999999874322  22234568999999999999999999987532      


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      .+..++||||+++ +|.+++...  ...+++..+..++.|+++||+|||+   .+++||||||+||+++.++.+||+|||
T Consensus        80 ~~~~~lv~e~~~~-~l~~~l~~~--~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~kL~dfg  153 (309)
T cd07845          80 LDSIFLVMEYCEQ-DLASLLDNM--PTPFSESQVKCLMLQLLRGLQYLHE---NFIIHRDLKVSNLLLTDKGCLKIADFG  153 (309)
T ss_pred             CCeEEEEEecCCC-CHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccc
Confidence            2468999999975 888887653  3468999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      +++..........            ....+..|.+||.+.. ..++.++|||||||++|||++|..|+..... ..+..+
T Consensus       154 ~~~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~  221 (309)
T cd07845         154 LARTYGLPAKPMT------------PKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLI  221 (309)
T ss_pred             eeeecCCccCCCC------------cccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9976543211000            0112345778887754 4578999999999999999999988865432 222222


Q ss_pred             HhccCcCCcc------------cc-ccccccCC---CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          674 ASFGSQDGRR------------RI-VDPVVLTT---CSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       674 ~~~~~~~~~~------------~~-~d~~~~~~---~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ..........            .. ........   ........+.+++.+|++.||++|||+.|++++-
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h~  291 (309)
T cd07845         222 IQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALESS  291 (309)
T ss_pred             HHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcCh
Confidence            2211100000            00 00000000   0011244578899999999999999999998653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-34  Score=306.59  Aligned_cols=204  Identities=25%  Similarity=0.328  Sum_probs=168.7

Q ss_pred             CccccccCCCCeeEEEEE-eCCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          443 DSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      ...+.||+|+||.||+|+ ..+|+.||||.++.. .....+...+|+++|++++|+|||++++.-.... . ........
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~-~-~~~~~~~v   93 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKF-L-GLVTRLPV   93 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccc-c-Ccccccce
Confidence            345679999999999999 678999999999753 3445567789999999999999999998643311 0 01145779


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec--CCC--cEEEecccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD--EHR--IAKLSDYGI  596 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld--~~~--~~kl~DFGl  596 (747)
                      +|||||++|||+..++...+...|+..+.+.+..+++.||.|||+   .+|+||||||.||++.  .+|  .-||+|||.
T Consensus        94 lvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrE---n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~  170 (732)
T KOG4250|consen   94 LVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRE---NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGA  170 (732)
T ss_pred             EEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHH---cCceeccCCCCcEEEeecCCCceEEeeecccc
Confidence            999999999999999876556679999999999999999999998   8999999999999994  334  469999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      ||-+++.....             .+.||..|.+||+... ..|+..+|.|||||++||++||..||-.
T Consensus       171 Arel~d~s~~~-------------S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p  226 (732)
T KOG4250|consen  171 ARELDDNSLFT-------------SLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIP  226 (732)
T ss_pred             cccCCCCCeee-------------eecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCc
Confidence            99887655321             2467778889998884 7899999999999999999999998864

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=1.8e-33  Score=293.39  Aligned_cols=242  Identities=18%  Similarity=0.202  Sum_probs=179.7

Q ss_pred             cccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHH---hcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          447 FMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFL---SKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l---~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .||+|+||.||++.. .+++.+|||.+....   ......+.+|..++   ...+||||+.+++++...        +..
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~   72 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTP--------DKL   72 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecC--------CeE
Confidence            489999999999985 568999999886432   11223344454433   345799999999988763        378


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++...   ..++|.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||++..
T Consensus        73 ~lv~e~~~~~~L~~~i~~~---~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~  146 (279)
T cd05633          73 CFILDLMNGGDLHYHLSQH---GVFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACD  146 (279)
T ss_pred             EEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcCCCCCCHHHEEECCCCCEEEccCCccee
Confidence            9999999999999988753   458999999999999999999999   7899999999999999999999999999864


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ......              ....++..|++||... ...++.++|||||||++|||++|..||................
T Consensus       147 ~~~~~~--------------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~  212 (279)
T cd05633         147 FSKKKP--------------HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL  212 (279)
T ss_pred             ccccCc--------------cCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhh
Confidence            332111              0113456788888775 3457899999999999999999999986432221111111100


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWN  726 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  726 (747)
                            ..+..+    ++.....+.+++.+||..||++||     +++|++++
T Consensus       213 ------~~~~~~----~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         213 ------TVNVEL----PDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             ------cCCcCC----ccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence                  011111    222334588999999999999999     59988875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=1.5e-33  Score=294.50  Aligned_cols=259  Identities=16%  Similarity=0.196  Sum_probs=187.5

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |++.+.||+|+||.||+|+. .+++.||+|+++... ........+|+.++.++. |+||+++++++.+..      ...
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~------~~~   74 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRK------TGR   74 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCC------CCc
Confidence            56778899999999999984 568999999987432 222334457899999885 999999999987631      247


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||++ |++.+++...  ...++|..+..++.|++.||+|||+   .+|+||||||+||+++. +.+||+|||+++
T Consensus        75 ~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~  147 (282)
T cd07831          75 LALVFELMD-MNLYELIKGR--KRPLPEKRVKSYMYQLLKSLDHMHR---NGIFHRDIKPENILIKD-DILKLADFGSCR  147 (282)
T ss_pred             EEEEEecCC-ccHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEcC-CCeEEEeccccc
Confidence            899999997 5888877653  2468999999999999999999999   78999999999999999 999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~  676 (747)
                      .........             ...++..|++||.+. ...++.++|||||||++|||++|..|+...+. +.+......
T Consensus       148 ~~~~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~  214 (282)
T cd07831         148 GIYSKPPYT-------------EYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDV  214 (282)
T ss_pred             ccccCCCcC-------------CCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHH
Confidence            653221110             012345677888654 34578899999999999999999988865432 222222111


Q ss_pred             cCcC-----------Ccccccccccc----CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQD-----------GRRRIVDPVVL----TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~-----------~~~~~~d~~~~----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....           .......+...    .......+..+.+++.+||+.+|++||++.++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         215 LGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             cCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhC
Confidence            1000           00000000000    00012335668999999999999999999999863

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=9.2e-34  Score=298.31  Aligned_cols=267  Identities=18%  Similarity=0.209  Sum_probs=190.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+++.||||+++...  ......+.+|+.++++++ ||||+++++++.....   ..
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~---~~   77 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEK---NG   77 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCC---CC
Confidence            4688899999999999999995 568999999886432  223457788999999995 6999999998876321   11


Q ss_pred             CceEEEEEeccCCCCcccccccCCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~  592 (747)
                      ....++||||+++ +|.+++.....  ...+++..+..++.||+.||.|||+   .+|+||||||+||+++. ++.+||+
T Consensus        78 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~~~nil~~~~~~~~kl~  153 (295)
T cd07837          78 KPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK---HGVMHRDLKPQNLLVDKQKGLLKIA  153 (295)
T ss_pred             CceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEecCCCeEEEe
Confidence            2347999999985 88888764321  3468999999999999999999999   89999999999999998 8999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLL  670 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~  670 (747)
                      |||+++.........            ....+...|.+||.+.. ..++.++|||||||++|||++|..|+..... ...
T Consensus       154 dfg~~~~~~~~~~~~------------~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~  221 (295)
T cd07837         154 DLGLGRAFSIPVKSY------------THEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQL  221 (295)
T ss_pred             ecccceecCCCcccc------------CCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Confidence            999986542211000            00122345778887644 4578999999999999999999888864322 222


Q ss_pred             HHHHhccCcCCccc------cc--------cccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          671 NEMASFGSQDGRRR------IV--------DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       671 ~~~~~~~~~~~~~~------~~--------d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ..+...........      ..        .+.......+.....+.+++.+||+.||.+||++.|++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         222 LHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             HHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            22211110000000      00        000000011223455889999999999999999999975

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-34  Score=322.28  Aligned_cols=272  Identities=18%  Similarity=0.313  Sum_probs=191.3

Q ss_pred             HHHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC---
Q 044236          436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS---  510 (747)
Q Consensus       436 ~~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~---  510 (747)
                      .+...+|+.++.||+||||.|||++ .-||+.+|||+|... .......+.+|+..+++|+|||||++|..+.+...   
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            4677889999999999999999999 447999999999754 33445678899999999999999999987654220   


Q ss_pred             -------------------------------------------------C------------------------------
Q 044236          511 -------------------------------------------------Q------------------------------  511 (747)
Q Consensus       511 -------------------------------------------------~------------------------------  511 (747)
                                                                       .                              
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                             0                              


Q ss_pred             ---------------------CCC--------CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 044236          512 ---------------------DDS--------NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF  562 (747)
Q Consensus       512 ---------------------~~~--------~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~y  562 (747)
                                           .+.        ....+||=||||+.-.++++++.+....  .-....+++.+|++||+|
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~--~~d~~wrLFreIlEGLaY  712 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS--QRDEAWRLFREILEGLAY  712 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch--hhHHHHHHHHHHHHHHHH
Confidence                                 000        0134688899999988888887542111  234567899999999999


Q ss_pred             hhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccc----ccchhcc--cCCCCCcccccceeeecCCcceeeeeec
Q 044236          563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME----EHEKLEA--KGEGPKARYGFLFICRTSAENVVIVVDI  636 (747)
Q Consensus       563 LH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~  636 (747)
                      +|+   .+||||||||.||++|.+..+||+|||+|+...    .......  ...............||+.|+|||++..
T Consensus       713 IH~---~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~  789 (1351)
T KOG1035|consen  713 IHD---QGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSD  789 (1351)
T ss_pred             HHh---CceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcc
Confidence            999   889999999999999999999999999997632    1111100  0000011111223578889999999976


Q ss_pred             cC---CCcCCceeehhHHHHHHhhCCCCCCCC--hhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccC
Q 044236          637 QR---TKLEDDVYNFGFILLESLVGPIVTGKG--EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC  711 (747)
Q Consensus       637 ~~---~s~k~DVwSfGvvl~Elltg~~p~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~  711 (747)
                      ..   |+.|+|+||+|||++||+.   ||+..  ....+....    ....   ..+   .++.......-.+++..+++
T Consensus       790 ~~~~~Yn~KiDmYSLGIVlFEM~y---PF~TsMERa~iL~~LR----~g~i---P~~---~~f~~~~~~~e~slI~~Ll~  856 (1351)
T KOG1035|consen  790 TSSNKYNSKIDMYSLGIVLFEMLY---PFGTSMERASILTNLR----KGSI---PEP---ADFFDPEHPEEASLIRWLLS  856 (1351)
T ss_pred             cccccccchhhhHHHHHHHHHHhc---cCCchHHHHHHHHhcc----cCCC---CCC---cccccccchHHHHHHHHHhc
Confidence            54   9999999999999999985   45422  111222111    1111   111   11112222224678889999


Q ss_pred             CCCCCCCCHHHHHH
Q 044236          712 PEPSSRPSFEDVLW  725 (747)
Q Consensus       712 ~dP~~RPs~~evl~  725 (747)
                      .||.+|||+.|++.
T Consensus       857 hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  857 HDPSKRPTATELLN  870 (1351)
T ss_pred             CCCccCCCHHHHhh
Confidence            99999999999974

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=2.4e-33  Score=302.82  Aligned_cols=265  Identities=18%  Similarity=0.196  Sum_probs=194.4

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|+..+.||+|+||.||+|+ ..+|+.||||++...  .......+.+|+.++++++||||+++++++.....  ..
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~   91 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKS--LE   91 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCC--cc
Confidence            34779999999999999999998 457999999998632  23334567789999999999999999998865321  11


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++||||+.+ +|.+.+..     .+++.....++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        92 ~~~~~~lv~e~~~~-~l~~~~~~-----~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nil~~~~~~~kL~Df  162 (353)
T cd07850          92 EFQDVYLVMELMDA-NLCQVIQM-----DLDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF  162 (353)
T ss_pred             ccCcEEEEEeccCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccC
Confidence            22467999999964 88877753     27888999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      |+++........             ....++..|++||.+....++.++|||||||++|||++|+.||...+. .....+
T Consensus       163 g~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~  229 (353)
T cd07850         163 GLARTAGTSFMM-------------TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKI  229 (353)
T ss_pred             ccceeCCCCCCC-------------CCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence            999754322110             001234568889988888899999999999999999999988864432 111111


Q ss_pred             HhccCcC-------------------C------cccccccc----ccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHH
Q 044236          674 ASFGSQD-------------------G------RRRIVDPV----VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL  724 (747)
Q Consensus       674 ~~~~~~~-------------------~------~~~~~d~~----~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  724 (747)
                      .......                   .      ........    .....+......+.+++.+||+.||++|||+.|++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL  309 (353)
T cd07850         230 IEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDAL  309 (353)
T ss_pred             HHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHh
Confidence            1100000                   0      00000000    00011123355688999999999999999999999


Q ss_pred             HH
Q 044236          725 WN  726 (747)
Q Consensus       725 ~~  726 (747)
                      ..
T Consensus       310 ~~  311 (353)
T cd07850         310 QH  311 (353)
T ss_pred             cC
Confidence            64

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-33  Score=294.25  Aligned_cols=258  Identities=18%  Similarity=0.212  Sum_probs=189.6

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |++.+.||+|++|.||+|.. .+|+.||||++....  ......+.+|++++++++||||+++++++...        ..
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~--------~~   72 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSE--------NK   72 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccC--------Ce
Confidence            56778999999999999985 579999999987433  22335678899999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||++ ++|.+++.... ...+++..+..++.|+++||+|||+   .+++||||+|+||+++.++.+||+|||+++
T Consensus        73 ~~iv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~L~~lH~---~~~~H~dl~p~nil~~~~~~~~l~df~~~~  147 (283)
T cd07835          73 LYLVFEFLD-LDLKKYMDSSP-LTGLDPPLIKSYLYQLLQGIAYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLAR  147 (283)
T ss_pred             EEEEEeccC-cCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCcEEEeeccccc
Confidence            899999995 68999886532 2468999999999999999999999   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~  676 (747)
                      ..........            ...++..|++||.+... .++.++|||||||++|||++|+.||...+. .....+...
T Consensus       148 ~~~~~~~~~~------------~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~  215 (283)
T cd07835         148 AFGVPVRTYT------------HEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRT  215 (283)
T ss_pred             ccCCCccccC------------ccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            5432111000            01124467888877554 578899999999999999999988864432 111111111


Q ss_pred             cCcCC----------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          677 GSQDG----------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       677 ~~~~~----------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .....                ......+ ............+.+++.+||+.+|.+|||+.|++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         216 LGTPDEDVWPGVTSLPDYKPTFPKWARQ-DLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             hCCCChHHhhhhhhchhhhhhccccccc-chhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            00000                0000000 001111222345889999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=2.1e-33  Score=294.89  Aligned_cols=245  Identities=17%  Similarity=0.264  Sum_probs=189.9

Q ss_pred             cccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          445 LSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ...||+|+||.||++.. .+++.||||++..........+.+|+.++++++|+||+++++++...        +..++||
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--------~~~~lv~   96 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG--------DELWVVM   96 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeC--------CEEEEEE
Confidence            35699999999999985 57899999998755545566788999999999999999999998763        4789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++++|.+++..    ..+++.....++.|++.||+|||+   .+++||||||+||+++.++.++|+|||++......
T Consensus        97 e~~~~~~L~~~~~~----~~~~~~~~~~~~~ql~~~l~~lH~---~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~  169 (292)
T cd06657          97 EFLEGGALTDIVTH----TRMNEEQIAAVCLAVLKALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  169 (292)
T ss_pred             ecCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEcccccceecccc
Confidence            99999999988753    347899999999999999999999   78999999999999999999999999998644321


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      ....            ....++..|++||......++.++|||||||++|||++|..|+..................   
T Consensus       170 ~~~~------------~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~---  234 (292)
T cd06657         170 VPRR------------KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP---  234 (292)
T ss_pred             cccc------------cccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCc---
Confidence            1100            0122445678888887778899999999999999999999998654332221111111100   


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                           ....  .......+.+++.+||+.+|.+||++.+++..
T Consensus       235 -----~~~~--~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         235 -----KLKN--LHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             -----ccCC--cccCCHHHHHHHHHHHhCCcccCcCHHHHhcC
Confidence                 0000  01122347889999999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=3e-33  Score=300.17  Aligned_cols=268  Identities=21%  Similarity=0.276  Sum_probs=194.0

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ..++|++.+.||+|+||.||+|.. .+|+.+|||++...  .......+.+|+.+++++ +||||++++++|...+    
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~----   80 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAEN----   80 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCC----
Confidence            356788889999999999999995 46889999988532  223345677899999999 9999999999886532    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....++||||++ ++|..++...    .++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        81 --~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~---~~i~H~dl~p~nill~~~~~~kl~d  150 (337)
T cd07852          81 --DKDIYLVFEYME-TDLHAVIRAN----ILEDVHKRYIMYQLLKALKYIHS---GNVIHRDLKPSNILLNSDCRVKLAD  150 (337)
T ss_pred             --CceEEEEecccc-cCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEee
Confidence              346899999997 5998888642    68899999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLN  671 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~  671 (747)
                      ||+++..........       ........++..|++||.+.. ..++.++|||||||++|||+||+.|+..... ....
T Consensus       151 ~g~~~~~~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~  223 (337)
T cd07852         151 FGLARSLSELEENPE-------NPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLE  223 (337)
T ss_pred             ccchhcccccccccc-------CcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Confidence            999976543221100       000111235667889997754 4578899999999999999999988864322 1111


Q ss_pred             HHHhccCcCC-----------cccccc----cc--ccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDG-----------RRRIVD----PV--VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~-----------~~~~~d----~~--~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+........           ...+.+    ..  ............+.+++.+||+.+|++|||+.++++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         224 KIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             HHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            1111100000           000000    00  0000011134458899999999999999999999975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.7e-33  Score=287.92  Aligned_cols=253  Identities=20%  Similarity=0.258  Sum_probs=193.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-----chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-----KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|.+.+.||+|+||.||+|+. .+++.||+|.+...     .......+.+|++++++++|+||+++++++....    
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~----   77 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPE----   77 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCC----
Confidence            4688899999999999999984 56899999987532     1234467889999999999999999999886532    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....++||||+++++|.+++...   ..+++.....++.|++.||.|||+   .+++||||||+||+++.++.++|+|
T Consensus        78 --~~~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~d  149 (264)
T cd06653          78 --EKKLSIFVEYMPGGSIKDQLKAY---GALTENVTRRYTRQILQGVSYLHS---NMIVHRDIKGANILRDSAGNVKLGD  149 (264)
T ss_pred             --CCEEEEEEEeCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECc
Confidence              34688999999999999988753   348889999999999999999998   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++.........         .......++..|++||.+....++.++|||||||++|||++|+.||......  ..+
T Consensus       150 fg~~~~~~~~~~~~---------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~  218 (264)
T cd06653         150 FGASKRIQTICMSG---------TGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAM--AAI  218 (264)
T ss_pred             cccccccccccccC---------ccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHH--HHH
Confidence            99987543211000         0001123456688999888888899999999999999999999998754321  111


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ........     .+    ..+......+.+++.+||. +|.+||+..+++.
T Consensus       219 ~~~~~~~~-----~~----~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         219 FKIATQPT-----KP----MLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             HHHHcCCC-----CC----CCCcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            11111110     11    1223334458899999999 5799999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=2.3e-33  Score=292.46  Aligned_cols=243  Identities=17%  Similarity=0.192  Sum_probs=184.4

Q ss_pred             ccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       448 iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ||+|+||+||+|. ..+|+.||+|.+....   ....+.+..|++++++++||||+++++++...        +..++||
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~~~~lv~   72 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETK--------DDLCLVM   72 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecC--------CeEEEEE
Confidence            6999999999998 4568999999986432   22345667899999999999999999988763        4789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++++|.+++.... ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++.....
T Consensus        73 e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~  148 (277)
T cd05577          73 TLMNGGDLKYHIYNVG-EPGFPEARAIFYAAQIICGLEHLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG  148 (277)
T ss_pred             ecCCCCcHHHHHHHcC-cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccCcchhhhccC
Confidence            9999999999887542 2368999999999999999999999   78999999999999999999999999998654321


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHHhccCcCCc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMASFGSQDGR  682 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~~~~~~~~~  682 (747)
                      ....             ...+...|.+||.+....++.++|||||||++|||++|+.||....... ...+......   
T Consensus       149 ~~~~-------------~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~---  212 (277)
T cd05577         149 KKIK-------------GRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLE---  212 (277)
T ss_pred             Cccc-------------cccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhcccc---
Confidence            1100             0123346778888877788999999999999999999999986543211 1111111000   


Q ss_pred             cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       683 ~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                         .....    +......+.+++.+||+.+|.+||     ++.+++.
T Consensus       213 ---~~~~~----~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         213 ---MAVEY----PDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             ---ccccC----CccCCHHHHHHHHHHccCChhHccCCCcccHHHHHh
Confidence               01111    122234488999999999999999     5555654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-33  Score=300.36  Aligned_cols=266  Identities=19%  Similarity=0.224  Sum_probs=189.7

Q ss_pred             CCCccccccCCCCeeEEEEEe-C--CCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-E--NGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~--~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .|++.+.||+|+||.||+|+. .  +++.||+|.+....   ....+.+.+|++++++++||||+++++++....     
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   75 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHA-----   75 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCC-----
Confidence            377888999999999999995 3  58999999998532   333466788999999999999999999997642     


Q ss_pred             CCceEEEEEeccCCCCcccccccCC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC----CCc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENC--PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE----HRI  588 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~----~~~  588 (747)
                       ....++||||+++ ++.+++....  ....++...+..++.|++.||+|||+   .+|+||||||+||+++.    ++.
T Consensus        76 -~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~h~dlkp~Nil~~~~~~~~~~  150 (316)
T cd07842          76 -DKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS---NWVLHRDLKPANILVMGEGPERGV  150 (316)
T ss_pred             -CceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEEcCCCCccce
Confidence             3579999999975 6766664321  12368889999999999999999999   88999999999999999    999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      +||+|||+++...........         .....++..|++||.+.. ..++.++|||||||++|||++|+.|+.....
T Consensus       151 ~kl~Dfg~~~~~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~  221 (316)
T cd07842         151 VKIGDLGLARLFNAPLKPLAD---------LDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREA  221 (316)
T ss_pred             EEECCCccccccCCCcccccc---------cCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcc
Confidence            999999999765432211000         001234456788887655 4578999999999999999999988864322


Q ss_pred             hh----------HHHHHhccCcC------------Cccc----cccccccCC-----CCH--HHHHHHHHHHhHccCCCC
Q 044236          668 FL----------LNEMASFGSQD------------GRRR----IVDPVVLTT-----CSQ--ESLSIVVSITNKCICPEP  714 (747)
Q Consensus       668 ~~----------~~~~~~~~~~~------------~~~~----~~d~~~~~~-----~~~--~~~~~~~~l~~~Cl~~dP  714 (747)
                      ..          +..+.......            ....    .........     ...  .....+.+++.+|++.||
T Consensus       222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P  301 (316)
T cd07842         222 KIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDP  301 (316)
T ss_pred             cccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCc
Confidence            11          11111000000            0000    000000000     000  223458899999999999


Q ss_pred             CCCCCHHHHHH
Q 044236          715 SSRPSFEDVLW  725 (747)
Q Consensus       715 ~~RPs~~evl~  725 (747)
                      ++|||+.|++.
T Consensus       302 ~~Rps~~eil~  312 (316)
T cd07842         302 TKRITAEEALE  312 (316)
T ss_pred             ccCcCHHHHhc
Confidence            99999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=4e-33  Score=288.12  Aligned_cols=242  Identities=17%  Similarity=0.266  Sum_probs=187.5

Q ss_pred             ccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          448 MGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       448 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ||.|+||.||+|+. .+++.||+|++....   ....+.+.+|+.++++++||||+++++++...        ...++||
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~~~lv~   72 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDK--------KYIYMLM   72 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcC--------CccEEEE
Confidence            69999999999995 458999999987432   23346789999999999999999999988763        4789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++|+|.+++.+.   ..+++..+..++.|++.||+|||+   .+++|+||||+||+++.++.+||+|||+++.....
T Consensus        73 e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lH~---~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~  146 (262)
T cd05572          73 EYCLGGELWTILRDR---GLFDEYTARFYIACVVLAFEYLHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG  146 (262)
T ss_pred             ecCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcc
Confidence            999999999999753   348899999999999999999999   88999999999999999999999999998765432


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      ...             ....+...|++||.+....++.++|||||||++|||++|..|+.....+....+........  
T Consensus       147 ~~~-------------~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--  211 (262)
T cd05572         147 QKT-------------WTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNG--  211 (262)
T ss_pred             ccc-------------ccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCC--
Confidence            110             01123456788888877888999999999999999999999987554222111111110000  


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLW  725 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~  725 (747)
                         .+    ..+......+.+++.+||+.+|++||+     +.|+++
T Consensus       212 ---~~----~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         212 ---KL----EFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             ---CC----CCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence               01    112222445899999999999999999     666654

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=4.1e-33  Score=297.87  Aligned_cols=265  Identities=15%  Similarity=0.190  Sum_probs=189.1

Q ss_pred             ccccCC--CCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEG--SRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G--~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      ..||+|  +||+||+++. .+|+.||||.+....  ....+.+.+|+.+++.++||||++++++|...        ...+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~--------~~~~   75 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTG--------SWLW   75 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecC--------CceE
Confidence            346666  9999999985 579999999987432  23346788999999999999999999999763        3789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+.+|++.+++.... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+|++|||.+...
T Consensus        76 ~v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~  151 (328)
T cd08226          76 VISPFMAYGSANSLLKTYF-PEGMSEALIGNILFGALRGLNYLHQ---NGYIHRNIKASHILISGDGLVSLSGLSHLYSL  151 (328)
T ss_pred             EEEecccCCCHHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEeCCCcEEEechHHHhhh
Confidence            9999999999999887542 2358899999999999999999998   78999999999999999999999999865332


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-H-HHHHhc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-L-NEMASF  676 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~-~~~~~~  676 (747)
                      ......... ....    ........+|++||.+..  ..++.++|||||||++|||++|+.|+....... . ......
T Consensus       152 ~~~~~~~~~-~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~  226 (328)
T cd08226         152 VRNGQKAKV-VYDF----PQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGP  226 (328)
T ss_pred             hccCccccc-cccc----cccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCC
Confidence            211110000 0000    001123346888998865  347899999999999999999999987543211 1 111000


Q ss_pred             cCcCC--------------------------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHH
Q 044236          677 GSQDG--------------------------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL  724 (747)
Q Consensus       677 ~~~~~--------------------------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  724 (747)
                      .....                                ...+.+.......+......+.+++.+||+.||++|||+.|++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l  306 (328)
T cd08226         227 PYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLL  306 (328)
T ss_pred             CCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHh
Confidence            00000                                0000011111112234556789999999999999999999998


Q ss_pred             HHH
Q 044236          725 WNL  727 (747)
Q Consensus       725 ~~L  727 (747)
                      +.-
T Consensus       307 ~~~  309 (328)
T cd08226         307 SHA  309 (328)
T ss_pred             hCH
Confidence            654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=3.3e-33  Score=295.16  Aligned_cols=271  Identities=17%  Similarity=0.241  Sum_probs=193.9

Q ss_pred             HHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC-C-
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS-Q-  511 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~-~-  511 (747)
                      ...++|++.+.||+|+||.||+|.. .+|+.||||+++...  ......+.+|++++++++||||+++++++..... . 
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            3567899999999999999999995 468999999997432  2333567789999999999999999999875320 0 


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                      ........++||||+++ ++.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~kl  157 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESG--LVHFSEDHIKSFMKQLLEGLNYCHK---KNFLHRDIKCSNILLNNKGQIKL  157 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCcEEe
Confidence            00112378999999986 676666543  3468999999999999999999999   79999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-h
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-L  669 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~  669 (747)
                      +|||+++..........           ........|++||.+.. ..++.++|||||||++|||++|+.|+...+.. .
T Consensus       158 ~dfg~~~~~~~~~~~~~-----------~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~  226 (302)
T cd07864         158 ADFGLARLYNSEESRPY-----------TNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQ  226 (302)
T ss_pred             CcccccccccCCccccc-----------ccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHH
Confidence            99999876543221000           00122346778886654 35788999999999999999999998754322 1


Q ss_pred             HHHHHhccCcCC---ccccc--------cc------cccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          670 LNEMASFGSQDG---RRRIV--------DP------VVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       670 ~~~~~~~~~~~~---~~~~~--------d~------~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      +..+........   ...+.        ++      ..... ....+..+.+++.+||+.+|.+||++.+++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         227 LELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREE-FSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             HHHHHHHhCCCChhhcccccccccccccccccccccchhhh-cCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            222221111100   00000        00      00000 1112445889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=3.1e-33  Score=296.56  Aligned_cols=280  Identities=18%  Similarity=0.261  Sum_probs=195.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.+|||++....  ......+.+|++++++++||||+++++++..........
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            57899999999999999999995 468999999986432  222346778999999999999999999876533111122


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ...+++||||+.+ ++...+...  ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~--~~~~~~~~~~~i~~~l~~al~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg  160 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENP--SVKLTESQIKCYMLQLLEGINYLHE---NHILHRDIKAANILIDNQGILKIADFG  160 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECcCc
Confidence            3468999999975 677666543  3468999999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~  673 (747)
                      +++............ .......+....++..|.+||.+.. ..++.++|||||||++|||++|++|+...... ....+
T Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~  239 (311)
T cd07866         161 LARPYDGPPPNPKGG-GGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLI  239 (311)
T ss_pred             cchhccCCCcccccC-CcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            997654322111100 0000011122344567889997654 45789999999999999999999988643322 12221


Q ss_pred             HhccCcCC---------ccccccccccCCCC-------HHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDG---------RRRIVDPVVLTTCS-------QESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~---------~~~~~d~~~~~~~~-------~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ........         .....+.......+       ......+.+++.+|++.||++|||+.|++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         240 FKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             HHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            11111000         00000000000000       112245889999999999999999999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=3.4e-33  Score=289.42  Aligned_cols=247  Identities=15%  Similarity=0.144  Sum_probs=185.7

Q ss_pred             HHHHHHhhCCCccccc--cCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeecc
Q 044236          433 EELKEATNNFDSLSFM--GEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIES  508 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~i--G~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~  508 (747)
                      .+.....++|++.+.+  |+|+||.||+++. .++..+|+|.+.......     .|+.....+ +||||+++++++...
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~-----~e~~~~~~~~~h~~iv~~~~~~~~~   81 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA-----IEPMVHQLMKDNPNFIKLYYSVTTL   81 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch-----hhHHHHHHhhcCCCEEEEEEEEecC
Confidence            3444556677777776  9999999999984 568899999986432111     122222222 799999999998763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-  587 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-  587 (747)
                              +..++||||+++|+|.+++...   ..++|..+..++.|+++||.|||+   .+++||||||+||+++.++ 
T Consensus        82 --------~~~~iv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~  147 (267)
T PHA03390         82 --------KGHVLIMDYIKDGDLFDLLKKE---GKLSEAEVKKIIRQLVEALNDLHK---HNIIHNDIKLENVLYDRAKD  147 (267)
T ss_pred             --------CeeEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEeCCCC
Confidence                    3789999999999999999753   368999999999999999999999   7899999999999999988 


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      .++|+|||+++.......                ..++..|++||.+....++.++|||||||++|||++|+.|+.....
T Consensus       148 ~~~l~dfg~~~~~~~~~~----------------~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~  211 (267)
T PHA03390        148 RIYLCDYGLCKIIGTPSC----------------YDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDED  211 (267)
T ss_pred             eEEEecCccceecCCCcc----------------CCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCc
Confidence            999999999865432111                1234567889988888899999999999999999999999874332


Q ss_pred             hhH--HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-HHHHHH
Q 044236          668 FLL--NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-FEDVLW  725 (747)
Q Consensus       668 ~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~evl~  725 (747)
                      ...  ..+....  ..     ...    ........+.+++.+||+.+|.+||+ ++|+++
T Consensus       212 ~~~~~~~~~~~~--~~-----~~~----~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        212 EELDLESLLKRQ--QK-----KLP----FIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             chhhHHHHHHhh--cc-----cCC----cccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence            211  1111111  00     001    11123345889999999999999996 688874

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-33  Score=292.71  Aligned_cols=261  Identities=19%  Similarity=0.310  Sum_probs=191.5

Q ss_pred             CCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |++.+.||+|+||.||+|+.. +++.+|+|++....  ......+.+|++++++++|||++++++++...+      ...
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~------~~~   74 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKG------KGS   74 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCC------CCc
Confidence            567789999999999999954 58999999998542  334467889999999999999999999987631      247


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++ +|.+++...  ...+++..+..++.|+++||+|||+   .+++|+||||+||++++++.+||+|||+++
T Consensus        75 ~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~i~~~i~~al~~LH~---~~~~h~dl~p~nil~~~~~~~~l~d~g~~~  148 (287)
T cd07840          75 IYMVFEYMDH-DLTGLLDSP--EVKFTESQIKCYMKQLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLAR  148 (287)
T ss_pred             EEEEeccccc-cHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEEcCCCCEEEcccccee
Confidence            8999999975 888887653  2468999999999999999999999   789999999999999999999999999987


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~~~  676 (747)
                      ..........           .....+..|++||.+.. ..++.++|||||||++|||+||+.|+...... .+..+...
T Consensus       149 ~~~~~~~~~~-----------~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~  217 (287)
T cd07840         149 PYTKRNSADY-----------TNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFEL  217 (287)
T ss_pred             eccCCCcccc-----------cccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            6543221000           00122346788886654 45789999999999999999999888754422 22222111


Q ss_pred             cCcC---C---cccc-----c------cccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          677 GSQD---G---RRRI-----V------DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       677 ~~~~---~---~~~~-----~------d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....   .   ...+     .      ...+...........+.+++.+||..+|.+||++.+++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         218 CGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            1000   0   0000     0      000000001112456889999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=8e-33  Score=283.44  Aligned_cols=249  Identities=22%  Similarity=0.345  Sum_probs=196.5

Q ss_pred             CCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      +|...+.||+|+||.||++... +++.+++|++........+.+.+|++++++++|+||+++++++...        ...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~~~   72 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKK--------DEL   72 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecC--------CeE
Confidence            4777889999999999999964 6899999999765544567889999999999999999999988763        478


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++++||+++++|.+++...  ...+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.+||+|||.+..
T Consensus        73 ~l~~e~~~~~~L~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~  147 (253)
T cd05122          73 WIVMEFCSGGSLKDLLKST--NQTLTESQIAYVCKELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQ  147 (253)
T ss_pred             EEEEecCCCCcHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhhc---CCEecCCCCHHHEEEccCCeEEEeecccccc
Confidence            9999999999999988753  2468999999999999999999999   8899999999999999999999999999865


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      ......             .....+...|.+||.+....++.++||||||+++|||++|+.|+...+..........   
T Consensus       148 ~~~~~~-------------~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~---  211 (253)
T cd05122         148 LSDTKA-------------RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIAT---  211 (253)
T ss_pred             cccccc-------------ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHh---
Confidence            543221             0012344567888888777889999999999999999999999875532221111111   


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ........       .......+.+++.+||+.||++|||+.|+++
T Consensus       212 ~~~~~~~~-------~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         212 NGPPGLRN-------PEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             cCCCCcCc-------ccccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            11111111       1111344889999999999999999999975

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3e-33  Score=300.59  Aligned_cols=267  Identities=17%  Similarity=0.223  Sum_probs=191.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|...+.||+|+||.||+|+. .+|+.||||++...  .......+.+|++++++++||||+++++++......  ..
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~--~~   91 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSG--DE   91 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccC--CC
Confidence            37899999999999999999984 57899999998642  122335678899999999999999999998653211  11


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++|+||+.. +|..+..     ..+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        92 ~~~~~lv~e~~~~-~l~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dlkp~NIll~~~~~~kL~dfg  162 (342)
T cd07879          92 FQDFYLVMPYMQT-DLQKIMG-----HPLSEDKVQYLVYQMLCGLKYIHS---AGIIHRDLKPGNLAVNEDCELKILDFG  162 (342)
T ss_pred             CceEEEEeccccc-CHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCC
Confidence            2457999999964 6766542     248899999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      +++.......               ...++..|++||.+.. ..++.++|||||||++|||++|+.||...+. ..+..+
T Consensus       163 ~~~~~~~~~~---------------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~  227 (342)
T cd07879         163 LARHADAEMT---------------GYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQI  227 (342)
T ss_pred             CCcCCCCCCC---------------CceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9865321100               1123456788887755 4688999999999999999999999875432 222211


Q ss_pred             HhccCcCC-----------cccccc--cccc-CC---CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH--HHHHH
Q 044236          674 ASFGSQDG-----------RRRIVD--PVVL-TT---CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN--LQYAA  731 (747)
Q Consensus       674 ~~~~~~~~-----------~~~~~d--~~~~-~~---~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~  731 (747)
                      ........           .....+  +... ..   ..+.....+.+++.+||+.||++||++.|++..  ++...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~  304 (342)
T cd07879         228 LKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFR  304 (342)
T ss_pred             HHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcc
Confidence            11100000           000000  0000 00   001123447899999999999999999999965  55443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-34  Score=276.90  Aligned_cols=256  Identities=18%  Similarity=0.250  Sum_probs=196.9

Q ss_pred             HhhCCCc-cccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDS-LSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~-~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .+++|.+ .++||-|-.|+|-.+. ..+|+.+|+|++..     ....++|+++.-.. .|||||.++++|...-    .
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D-----s~KARrEVeLHw~~s~h~~iV~IidVyeNs~----~  129 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD-----SPKARREVELHWMASGHPHIVSIIDVYENSY----Q  129 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc-----CHHHHhHhhhhhhhcCCCceEEeehhhhhhc----c
Confidence            4677765 3679999999999998 46799999998863     23456788876554 6999999999987532    2


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec---CCCcEEE
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD---EHRIAKL  591 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl  591 (747)
                      +...+.+|||.|+||.|+..+++++ ...+++.++-.|+.||+.|+.|||+   ..|.||||||+|+|..   .+..+|+
T Consensus       130 ~rkcLLiVmE~meGGeLfsriq~~g-~~afTErea~eI~~qI~~Av~~lH~---~nIAHRDlKpENLLyt~t~~na~lKL  205 (400)
T KOG0604|consen  130 GRKCLLIVMECMEGGELFSRIQDRG-DQAFTEREASEIMKQIGLAVRYLHS---MNIAHRDLKPENLLYTTTSPNAPLKL  205 (400)
T ss_pred             CceeeEeeeecccchHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHh---cchhhccCChhheeeecCCCCcceEe
Confidence            3568899999999999999998753 5679999999999999999999999   8899999999999996   4567999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-  670 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-  670 (747)
                      +|||+|+.-.....             ....|.+++|.|||++...+|+..+|+||+||++|-|+.|-+||.......+ 
T Consensus       206 tDfGFAK~t~~~~~-------------L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~ais  272 (400)
T KOG0604|consen  206 TDFGFAKETQEPGD-------------LMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS  272 (400)
T ss_pred             cccccccccCCCcc-------------ccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCC
Confidence            99999976443221             1235778899999999999999999999999999999999888754321110 


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .-|.+... .+.-++.+|     .....++...++++..+..+|++|-|+.|++.
T Consensus       273 pgMk~rI~-~gqy~FP~p-----EWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  273 PGMKRRIR-TGQYEFPEP-----EWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             hhHHhHhh-ccCccCCCh-----hHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence            01111000 011122222     23455667888999999999999999999975

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-33  Score=286.79  Aligned_cols=243  Identities=18%  Similarity=0.189  Sum_probs=181.0

Q ss_pred             ccccCCCCeeEEEEEe-CCCcEEEEEEeeccch---hcHHHHHHHHHHH-hcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK---YSIQNLKVRLDFL-SKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~E~~~l-~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|.. .+|+.||||.+.....   .....+..|..++ ...+|+||+++++++...        +..+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--------~~~~   73 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSK--------DYLY   73 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcC--------CeEE
Confidence            5689999999999985 5689999999864321   2223445555544 455899999999998763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||+++|+|.++++..   ..+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.+||+|||+++..
T Consensus        74 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  147 (260)
T cd05611          74 LVMEYLNGGDCASLIKTL---GGLPEDWAKQYIAEVVLGVEDLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNG  147 (260)
T ss_pred             EEEeccCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEeecccceec
Confidence            999999999999998753   358889999999999999999999   78999999999999999999999999998653


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD  680 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~  680 (747)
                      ....                ...+...|++||.+....++.++|||||||++|||+||..|+..................
T Consensus       148 ~~~~----------------~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~  211 (260)
T cd05611         148 LENK----------------KFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRIN  211 (260)
T ss_pred             cccc----------------cCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccC
Confidence            2210                012334577888877777899999999999999999999998754433221111110000


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                           ..+....    .....+.+++.+||+.+|++||++.++.+.|
T Consensus       212 -----~~~~~~~----~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l  249 (260)
T cd05611         212 -----WPEEVKE----FCSPEAVDLINRLLCMDPAKRLGANGYQEIK  249 (260)
T ss_pred             -----CCCcccc----cCCHHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence                 0111111    2234489999999999999999776554443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.3e-33  Score=300.98  Aligned_cols=265  Identities=16%  Similarity=0.230  Sum_probs=193.1

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|.+.+.||+|+||.||+|+ ..+++.||||.++..  .......+.+|+.+++.++|+||+++++++....   ...
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~---~~~   80 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPH---REA   80 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheeccc---ccc
Confidence            3568899999999999999998 457899999998742  2233456778999999999999999999886532   111


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+. ++|.+++...   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||
T Consensus        81 ~~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg  153 (337)
T cd07858          81 FNDVYIVYELMD-TDLHQIIRSS---QTLSDDHCQYFLYQLLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKICDFG  153 (337)
T ss_pred             cCcEEEEEeCCC-CCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECcCc
Confidence            235899999996 6888888653   458999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~  673 (747)
                      +++..........            ...++..|++||.+.. ..++.++|||||||++|||++|+.||...+... ...+
T Consensus       154 ~~~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~  221 (337)
T cd07858         154 LARTTSEKGDFMT------------EYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLI  221 (337)
T ss_pred             cccccCCCccccc------------ccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHH
Confidence            9975532211000            0123456788887654 468899999999999999999999886443211 1111


Q ss_pred             HhccCc-----------CCcc-------ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQ-----------DGRR-------RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~-----------~~~~-------~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......           ....       ...++.. ....+.....+.+++.+||+.+|++|||+.|+++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h  291 (337)
T cd07858         222 TELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSF-ARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAH  291 (337)
T ss_pred             HHHhCCCChHHhhhcCchhhhHHHHhcCcccccCH-HHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcC
Confidence            110000           0000       0000000 00112234558899999999999999999999977

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=7e-33  Score=293.35  Aligned_cols=246  Identities=25%  Similarity=0.328  Sum_probs=187.3

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .|+..+.||+|+||.||+|+. .+++.||+|.+...   .....+++.+|+++++.++|+|++++++++...        
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------   87 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE--------   87 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcC--------
Confidence            366678899999999999994 56889999998642   223345678899999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+. |++.+++...  ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+
T Consensus        88 ~~~~lv~e~~~-~~l~~~~~~~--~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~  161 (308)
T cd06634          88 HTAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGS  161 (308)
T ss_pred             CeeEEEEEccC-CCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHhEEECCCCcEEECCccc
Confidence            37899999996 5887776543  3458899999999999999999998   7899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNE  672 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~  672 (747)
                      +........                ..++..|.+||.+.   ...++.++|||||||++|||++|..|+....... ...
T Consensus       162 ~~~~~~~~~----------------~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~  225 (308)
T cd06634         162 ASIMAPANX----------------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH  225 (308)
T ss_pred             ceeecCccc----------------ccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHH
Confidence            865432110                12334577788753   3467889999999999999999998876433221 111


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      +...   . .     +..   ........+.+++.+||+.+|++||++.+++....
T Consensus       226 ~~~~---~-~-----~~~---~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~  269 (308)
T cd06634         226 IAQN---E-S-----PAL---QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF  269 (308)
T ss_pred             Hhhc---C-C-----CCc---CcccccHHHHHHHHHHhhCCcccCCCHHHHhhCcc
Confidence            1110   0 0     100   01123344889999999999999999999987544

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-32  Score=283.29  Aligned_cols=247  Identities=22%  Similarity=0.378  Sum_probs=194.1

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+|+. .+++.||+|.+.....  ...+.+.+|++++++++|||++++++++...        .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~   72 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETS--------D   72 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeC--------C
Confidence            477789999999999999985 4688999999975443  4557889999999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~  146 (254)
T cd06627          73 SLYIILEYAENGSLRQIIKKF---GPFPESLVAVYVYQVLQGLAYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVA  146 (254)
T ss_pred             EEEEEEecCCCCcHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEECCCCCEEEeccccc
Confidence            789999999999999998753   468999999999999999999998   78999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      .........            .....+...|.+||......++.++||||+|+++|||++|..|+.........+  ...
T Consensus       147 ~~~~~~~~~------------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~--~~~  212 (254)
T cd06627         147 TKLNDVSKD------------DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALF--RIV  212 (254)
T ss_pred             eecCCCccc------------ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHH--HHh
Confidence            765432211            001223446778887777778899999999999999999999886543221111  111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      . ..     .+..    +......+.+++.+||..+|++|||+.|++.
T Consensus       213 ~-~~-----~~~~----~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         213 Q-DD-----HPPL----PEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             c-cC-----CCCC----CCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            0 00     0111    1122344889999999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-35  Score=328.26  Aligned_cols=255  Identities=19%  Similarity=0.318  Sum_probs=198.5

Q ss_pred             HHHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       436 ~~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ...+-+++....||.|.||.||-|. .++|+..|+|.++...  ......+.+|+.++..++|||+|++||+-.+.    
T Consensus      1231 snV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHR---- 1306 (1509)
T KOG4645|consen 1231 SNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHR---- 1306 (1509)
T ss_pred             ccceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecH----
Confidence            3344567778899999999999998 7889999999887432  33456788999999999999999999987763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                          ...+|.||||++|+|.+.+..   .+..++.....+..|++.|++|||+   .+||||||||.||+||.+|.+|.+
T Consensus      1307 ----ekv~IFMEyC~~GsLa~ll~~---gri~dE~vt~vyt~qll~gla~LH~---~gIVHRDIK~aNI~Ld~~g~iK~~ 1376 (1509)
T KOG4645|consen 1307 ----EKVYIFMEYCEGGSLASLLEH---GRIEDEMVTRVYTKQLLEGLAYLHE---HGIVHRDIKPANILLDFNGLIKYG 1376 (1509)
T ss_pred             ----HHHHHHHHHhccCcHHHHHHh---cchhhhhHHHHHHHHHHHHHHHHHh---cCceecCCCccceeeecCCcEEee
Confidence                478999999999999999875   3346666677788999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC---CCcCCceeehhHHHHHHhhCCCCCCCChhh-
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR---TKLEDDVYNFGFILLESLVGPIVTGKGEAF-  668 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-  668 (747)
                      |||.|+.+........      +.  .-.+.||+.|||||++.+..   -..+.||||+|||+.||+||+.||..-+.+ 
T Consensus      1377 DFGsa~ki~~~~~~~~------~e--l~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~ 1448 (1509)
T KOG4645|consen 1377 DFGSAVKIKNNAQTMP------GE--LQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEW 1448 (1509)
T ss_pred             cccceeEecCchhcCC------HH--HHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchh
Confidence            9999977654421110      00  11256889999999986543   345789999999999999999999754322 


Q ss_pred             -hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          669 -LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       669 -~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                       ++..+..    ..     .|    .+|+..+.+-.+++.+|+..||++|-++.|+++
T Consensus      1449 aIMy~V~~----gh-----~P----q~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1449 AIMYHVAA----GH-----KP----QIPERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             HHHhHHhc----cC-----CC----CCchhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence             1111111    11     12    234456666899999999999999988776664

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-35  Score=277.44  Aligned_cols=259  Identities=20%  Similarity=0.286  Sum_probs=190.8

Q ss_pred             cccCHHHHHHHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc-hhcHHHHHHHHHHHhc-CCCCCcceeeee
Q 044236          428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSK-LQHPHLVSLLGH  504 (747)
Q Consensus       428 ~~~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~-l~H~nIv~l~g~  504 (747)
                      ..|+.++|+.       +..||.|.||.|+|-. .+.|+..|||+++... ..+++++..|.+...+ =+-||||++||+
T Consensus        59 ~~F~~~~Lqd-------lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa  131 (361)
T KOG1006|consen   59 HTFTSDNLQD-------LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGA  131 (361)
T ss_pred             cccccchHHH-------HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhh
Confidence            3565555544       5679999999999998 4679999999998543 3566788888876554 468999999999


Q ss_pred             eeccCCCCCCCCceEEEEEeccCCCCccccccc--CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCcee
Q 044236          505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNIL  582 (747)
Q Consensus       505 ~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~--~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NIL  582 (747)
                      +...+        ..||.||.|.- |++.+...  .-....+++...-+|....+.||.||...  ..|||||+||+|||
T Consensus       132 ~F~EG--------dcWiCMELMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNIL  200 (361)
T KOG1006|consen  132 LFSEG--------DCWICMELMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNIL  200 (361)
T ss_pred             hhcCC--------ceeeeHHHHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheE
Confidence            98754        68999999965 77655431  01123477777778888889999999875  67999999999999


Q ss_pred             ecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc--CCCcCCceeehhHHHHHHhhCCC
Q 044236          583 LDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ--RTKLEDDVYNFGFILLESLVGPI  660 (747)
Q Consensus       583 ld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~s~k~DVwSfGvvl~Elltg~~  660 (747)
                      +|..|.+|+||||++-.+.++...+.             -+|..+|+|||.+...  .|+.+|||||+|++|||++||+.
T Consensus       201 ldr~G~vKLCDFGIcGqLv~SiAkT~-------------daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~f  267 (361)
T KOG1006|consen  201 LDRHGDVKLCDFGICGQLVDSIAKTV-------------DAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNF  267 (361)
T ss_pred             EecCCCEeeecccchHhHHHHHHhhh-------------ccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCC
Confidence            99999999999999865544332211             1345688999987643  48999999999999999999999


Q ss_pred             CCCCChhhhHHHHHhccCcCCcccccccccc-CCC-CHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVL-TTC-SQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      |+.+-+. .+.++......       ||.+. .+. .-+....+..++..|+..|-..||...++.+
T Consensus       268 Pyr~w~s-vfeql~~Vv~g-------dpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  268 PYRKWDS-VFEQLCQVVIG-------DPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             CcchHHH-HHHHHHHHHcC-------CCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence            9975443 22333222211       12111 110 1123445889999999999999999999875

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=4.3e-33  Score=292.89  Aligned_cols=265  Identities=11%  Similarity=0.085  Sum_probs=180.0

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC----CcEEEEEEeeccchhcH-----------HHHHHHHHHHhcCCCCCcceeeee
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN----GTYVAIRSLTFLKKYSI-----------QNLKVRLDFLSKLQHPHLVSLLGH  504 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~~~~~~~-----------~~~~~E~~~l~~l~H~nIv~l~g~  504 (747)
                      +.|++.+.||+|+||.||+|+..+    +..+|+|..........           .....+...+..+.|+||++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            568899999999999999998543    45666765432221110           112233445667799999999997


Q ss_pred             eeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec
Q 044236          505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD  584 (747)
Q Consensus       505 ~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  584 (747)
                      +....    ......++++|++.. ++.+.+...   ...++.....++.|+++||+|||+   .+|+||||||+|||++
T Consensus        92 ~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~iiHrDiKp~Nill~  160 (294)
T PHA02882         92 GSFKR----CRMYYRFILLEKLVE-NTKEIFKRI---KCKNKKLIKNIMKDMLTTLEYIHE---HGISHGDIKPENIMVD  160 (294)
T ss_pred             eeEec----CCceEEEEEEehhcc-CHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEc
Confidence            65422    112245788888744 555555432   235788889999999999999999   8899999999999999


Q ss_pred             CCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          585 EHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       585 ~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      .++.+||+|||+|+..............     ......++..|++||......++.++|||||||++|||++|+.||..
T Consensus       161 ~~~~~~l~DFGla~~~~~~~~~~~~~~~-----~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~  235 (294)
T PHA02882        161 GNNRGYIIDYGIASHFIIHGKHIEYSKE-----QKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKG  235 (294)
T ss_pred             CCCcEEEEEcCCceeeccCCcccccccc-----cccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCc
Confidence            9999999999999765432211100000     00112466788899998888899999999999999999999999975


Q ss_pred             Chh-hhHHHHHhccCcCCccccccccc-cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          665 GEA-FLLNEMASFGSQDGRRRIVDPVV-LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       665 ~~~-~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ... .........   +...++..+.. ...+    ...+.+++..||..+|++||++.++.+.+
T Consensus       236 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        236 FGHNGNLIHAAKC---DFIKRLHEGKIKIKNA----NKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             cccchHHHHHhHH---HHHHHhhhhhhccCCC----CHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            421 111100000   00000000100 1122    34488999999999999999999999875

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=7.1e-33  Score=284.94  Aligned_cols=249  Identities=19%  Similarity=0.283  Sum_probs=196.1

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+++ ..+++.+|+|.+...  .......+.+|++++++++|+||+++++++...        .
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~   72 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDG--------N   72 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccC--------C
Confidence            47788999999999999998 457889999998743  233456778899999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ..++||||+++++|.+++.+.. ....+++..+..++.|++.||+|||+   .+++||||+|+||+++.++.+|++|||+
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~---~~i~h~~l~~~ni~~~~~~~~kl~d~g~  149 (256)
T cd08530          73 KLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGI  149 (256)
T ss_pred             EEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEEecCCcEEEeeccc
Confidence            7899999999999999886521 23568999999999999999999999   8899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ++........ .             ..+...|.+||.+....++.++|+||||+++|||++|+.|+...+..........
T Consensus       150 ~~~~~~~~~~-~-------------~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~  215 (256)
T cd08530         150 SKVLKKNMAK-T-------------QIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQR  215 (256)
T ss_pred             hhhhccCCcc-c-------------ccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhc
Confidence            9765432110 0             1123456778888778889999999999999999999999976554332222111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                         ...         ...+......+.+++.+|++.+|++||++.|+++.
T Consensus       216 ---~~~---------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         216 ---GKY---------PPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             ---CCC---------CCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence               100         11122344558999999999999999999999853

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=9.9e-33  Score=287.77  Aligned_cols=242  Identities=17%  Similarity=0.187  Sum_probs=180.1

Q ss_pred             cccCCCCeeEEEEEe-CCCcEEEEEEeeccch---hcHHHHHHHH---HHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          447 FMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK---YSIQNLKVRL---DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~E~---~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .||+|+||.||+|+. .+++.||+|.+.....   .....+..|.   ..++...||||+++++++...        +..
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~   72 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP--------DKL   72 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecC--------CEE
Confidence            489999999999984 5689999999864321   1112233343   344556899999999888763        478


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|..++..   ...++|..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        73 ~~v~e~~~g~~L~~~l~~---~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~nili~~~~~~kl~dfg~~~~  146 (278)
T cd05606          73 SFILDLMNGGDLHYHLSQ---HGVFSEAEMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACD  146 (278)
T ss_pred             EEEEecCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCCCCHHHEEECCCCCEEEccCcCccc
Confidence            999999999999988864   3469999999999999999999999   7899999999999999999999999999864


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .......              ...++..|++||.+... .++.++|||||||++|||++|+.||............... 
T Consensus       147 ~~~~~~~--------------~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~-  211 (278)
T cd05606         147 FSKKKPH--------------ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMT-  211 (278)
T ss_pred             cCccCCc--------------CcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHh-
Confidence            4321110              11345678889987644 5889999999999999999999998754221111111100 


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWN  726 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  726 (747)
                           ...++.+...+    +..+.+++.+|+..+|.+||     ++.+++++
T Consensus       212 -----~~~~~~~~~~~----s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         212 -----LTMAVELPDSF----SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             -----hccCCCCCCcC----CHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence                 00111222222    34588999999999999999     99999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=8.1e-33  Score=291.28  Aligned_cols=252  Identities=21%  Similarity=0.325  Sum_probs=186.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCC-CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+... ++.||||.++... ......+..|+.++.+.. ||||++++++|...       
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~-------   86 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITD-------   86 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecC-------
Confidence            3568889999999999999999754 8999999997532 233456677887777765 99999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++ ++.+++...  ...+++..+..++.|+++||+|||+.  .+|+||||+|+||+++.++.+||+|||
T Consensus        87 -~~~~~v~e~~~~-~l~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg  160 (296)
T cd06618          87 -SDVFICMELMST-CLDKLLKRI--QGPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFG  160 (296)
T ss_pred             -CeEEEEeeccCc-CHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccc
Confidence             378999999854 777665542  24689999999999999999999973  479999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC----CCcCCceeehhHHHHHHhhCCCCCCCChhh--h
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR----TKLEDDVYNFGFILLESLVGPIVTGKGEAF--L  669 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----~s~k~DVwSfGvvl~Elltg~~p~~~~~~~--~  669 (747)
                      ++..........             ...+...|++||.+....    ++.++|||||||++|||++|+.|+......  .
T Consensus       161 ~~~~~~~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~  227 (296)
T cd06618         161 ISGRLVDSKAKT-------------RSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEV  227 (296)
T ss_pred             cchhccCCCccc-------------CCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHH
Confidence            986543211110             011234567788775443    788999999999999999999998643221  1


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      +..+..   .. ......   ...+    ...+.+++.+||+.||.+||++.+++++-
T Consensus       228 ~~~~~~---~~-~~~~~~---~~~~----~~~l~~li~~~l~~~p~~Rp~~~~il~~~  274 (296)
T cd06618         228 LTKILQ---EE-PPSLPP---NEGF----SPDFCSFVDLCLTKDHRKRPKYRELLQHP  274 (296)
T ss_pred             HHHHhc---CC-CCCCCC---CCCC----CHHHHHHHHHHccCChhhCCCHHHHhcCh
Confidence            111111   10 000000   0112    33488999999999999999999998654

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=4.4e-33  Score=292.99  Aligned_cols=262  Identities=17%  Similarity=0.219  Sum_probs=187.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||+|.+.....  .....+.+|++++++++||||+++++++...        
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------   73 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE--------   73 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecC--------
Confidence            5688899999999999999985 4689999999864322  2335678899999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCcEEEeccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRIAKLSDYG  595 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFG  595 (747)
                      ...++||||++ ++|.+++... ....+++.....++.||+.||+|||+   .+|+||||||+||+++. ++.+||+|||
T Consensus        74 ~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dl~p~nill~~~~~~~kl~dfg  148 (294)
T PLN00009         74 KRLYLVFEYLD-LDLKKHMDSS-PDFAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFG  148 (294)
T ss_pred             CeEEEEEeccc-ccHHHHHHhC-CCCCcCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCcceEEEECCCCEEEEcccc
Confidence            47899999996 5787777543 22346788888999999999999999   78999999999999985 5679999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      +++..........            ...++..|++||.+.. ..++.++|||||||++|||+||+.|+..... .....+
T Consensus       149 ~~~~~~~~~~~~~------------~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~  216 (294)
T PLN00009        149 LARAFGIPVRTFT------------HEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKI  216 (294)
T ss_pred             cccccCCCccccc------------cCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9865432111000            0123446778887654 3578899999999999999999988864322 222221


Q ss_pred             HhccCcCC--c-c---ccc-----cccccC----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDG--R-R---RIV-----DPVVLT----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~--~-~---~~~-----d~~~~~----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........  . .   ...     -+....    ...+.....+.+++.+|++.+|++||++.++++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        217 FRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             HHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11100000  0 0   000     000000    0111223447899999999999999999999863

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=9.8e-33  Score=293.25  Aligned_cols=264  Identities=19%  Similarity=0.180  Sum_probs=186.0

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      +.+|.|+++.||+++. +++.||||+++..  .....+.+.+|++++++++||||+++++++...        ...+++|
T Consensus         8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~--------~~~~~~~   78 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVD--------SELYVVS   78 (314)
T ss_pred             HhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecC--------CeEEEEE
Confidence            3345555555555554 6899999998753  344567899999999999999999999988763        3789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++|+|.+++.... ...+++.....++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||.+......
T Consensus        79 e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~LH~---~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~  154 (314)
T cd08216          79 PLMAYGSCEDLLKTHF-PEGLPELAIAFILKDVLNALDYIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKH  154 (314)
T ss_pred             eccCCCCHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCcceEEEecCCceEEecCccceeeccc
Confidence            9999999999987542 2358888899999999999999999   78999999999999999999999999998654322


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChhhh--HHHHHhccC-
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL--LNEMASFGS-  678 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~--~~~~~~~~~-  678 (747)
                      ........    . ......++..|++||.+..  ..++.++|||||||++|||++|+.||.......  ......... 
T Consensus       155 ~~~~~~~~----~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~  229 (314)
T cd08216         155 GKRQRVVH----D-FPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPC  229 (314)
T ss_pred             cccccccc----c-ccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCcc
Confidence            11100000    0 0011233456788888765  358899999999999999999999987543211  111110000 


Q ss_pred             ---cC-------Cccc----cccccc----cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          679 ---QD-------GRRR----IVDPVV----LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       679 ---~~-------~~~~----~~d~~~----~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                         ..       ....    ..++..    ...........+.+++.+||+.||++|||+.|++++-
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p  296 (314)
T cd08216         230 LLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHS  296 (314)
T ss_pred             ccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCc
Confidence               00       0000    000000    0111223345688999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.2e-32  Score=283.36  Aligned_cols=254  Identities=21%  Similarity=0.317  Sum_probs=197.7

Q ss_pred             CCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|+..+.||+|++|.||+|... +++.|++|++....  ....+.+.+|++++++++||||+++++.+....      ..
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~------~~   74 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEE------KN   74 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCC------CC
Confidence            4777889999999999999964 78999999987543  245678899999999999999999999987631      24


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.+++...   ..++|..+..++.|++.||+|||+   .+++|+||+|+||+++.++.+||+|||.+
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~---~~~~h~dl~p~ni~i~~~~~~~l~d~~~~  148 (260)
T cd06606          75 TLNIFLEYVSGGSLSSLLKKF---GKLPEPVIRKYTRQILEGLAYLHS---NGIVHRDIKGANILVDSDGVVKLADFGCA  148 (260)
T ss_pred             eEEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEcccccE
Confidence            789999999999999998753   268999999999999999999999   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhcc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~  677 (747)
                      ...........          .....+...|.+||......++.++||||||+++|||++|..|+...+. .........
T Consensus       149 ~~~~~~~~~~~----------~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~~~~~  217 (260)
T cd06606         149 KRLGDIETGEG----------TGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN-PMAALYKIG  217 (260)
T ss_pred             Eeccccccccc----------ccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc-hHHHHHhcc
Confidence            76543321100          0011234467788888777799999999999999999999999876541 111111111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....     +    ..+......+.+++.+|++.+|.+||++.|++..
T Consensus       218 ~~~~~-----~----~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~  257 (260)
T cd06606         218 SSGEP-----P----EIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQH  257 (260)
T ss_pred             ccCCC-----c----CCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhC
Confidence            10111     1    1122224458899999999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=1.3e-32  Score=282.95  Aligned_cols=250  Identities=19%  Similarity=0.305  Sum_probs=196.8

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||++.. .+++.||+|++....  ....+.+.+|++++++++|||++++++.+...        .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~--------~   72 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEK--------G   72 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecC--------C
Confidence            477889999999999999995 468999999987543  24556788999999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ..++||||+++++|.+++.... ....+++..+..++.+++.||+|||+   .+++|+||+|+||+++.++.+||+|||.
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~~H~dl~~~nil~~~~~~~~l~d~~~  149 (258)
T cd08215          73 KLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGI  149 (258)
T ss_pred             EEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHHeEEcCCCcEEECCccc
Confidence            7899999999999999987532 13568999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      +..........            ....+...|.+||......++.++||||+|+++|||++|..|+...+...+......
T Consensus       150 ~~~~~~~~~~~------------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~  217 (258)
T cd08215         150 SKVLSSTVDLA------------KTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILK  217 (258)
T ss_pred             eeecccCccee------------cceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhc
Confidence            86543321000            012345567888888788899999999999999999999999875543322221111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                         ...     +.+..    .....+.+++.+||..+|++|||+.|++.
T Consensus       218 ---~~~-----~~~~~----~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         218 ---GQY-----PPIPS----QYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             ---CCC-----CCCCC----CCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence               000     11111    22334889999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=8.1e-33  Score=285.88  Aligned_cols=251  Identities=21%  Similarity=0.256  Sum_probs=188.3

Q ss_pred             ccCCCCeeEEEEEeC-CCcEEEEEEeeccch---hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          448 MGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK---YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       448 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ||+|+||.||+++.. +|+.+|+|.+.....   ...+.+.+|++++++++||||+++++.+..        ....++||
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~--------~~~~~lv~   72 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG--------KKNLYLVM   72 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheec--------CcEEEEEE
Confidence            689999999999965 599999999874332   345678899999999999999999988765        34789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++++|.+++...   ..+++..+..++.|+++||+|||+   .+++||||+|+||+++.++.+||+|||++......
T Consensus        73 e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~  146 (265)
T cd05579          73 EYLPGGDLASLLENV---GSLDEDVARIYIAEIVLALEYLHS---NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVR  146 (265)
T ss_pred             ecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---cCeecCCCCHHHeEEcCCCCEEEEecccchhcccC
Confidence            999999999998753   368999999999999999999998   88999999999999999999999999998654322


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      .....    ...........+...|.+||......++.++||||||+++||+++|..|+.................    
T Consensus       147 ~~~~~----~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~----  218 (265)
T cd05579         147 RQINL----NDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKI----  218 (265)
T ss_pred             ccccc----ccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCc----
Confidence            11000    0000011112344567888888777788999999999999999999999875543322221111000    


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                         ..  ...+  .....+.+++.+||+.+|++|||+.++.+.|
T Consensus       219 ---~~--~~~~--~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l  255 (265)
T cd05579         219 ---EW--PEDV--EVSDEAIDLISKLLVPDPEKRLGAKSIEEIK  255 (265)
T ss_pred             ---CC--Cccc--cCCHHHHHHHHHHhcCCHhhcCCCccHHHHh
Confidence               00  0111  0134588999999999999999995555444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=7.6e-33  Score=297.77  Aligned_cols=273  Identities=15%  Similarity=0.205  Sum_probs=197.5

Q ss_pred             cCHHHHHHHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeee
Q 044236          430 FYLEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI  506 (747)
Q Consensus       430 ~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~  506 (747)
                      ....++...+++|.+.+.||+|+||.||+|. ..+|+.||||+++..  .....+.+.+|++++++++||||+++++++.
T Consensus         7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~   86 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT   86 (345)
T ss_pred             hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence            3456677788999999999999999999998 467999999998742  2223456788999999999999999999886


Q ss_pred             ccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC
Q 044236          507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH  586 (747)
Q Consensus       507 ~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~  586 (747)
                      ....  .......++++|++ +++|.+++..    ..+++..+..++.|+++||+|||+   .+|+||||||+||+++.+
T Consensus        87 ~~~~--~~~~~~~~lv~~~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~  156 (345)
T cd07877          87 PARS--LEEFNDVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNED  156 (345)
T ss_pred             eccc--ccccccEEEEehhc-ccCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEcCC
Confidence            4321  11124578888887 7799887753    348999999999999999999999   889999999999999999


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      +.+||+|||+++.......               ...++..|++||.+.. ..++.++|||||||++|||++|+.|+...
T Consensus       157 ~~~kl~dfg~~~~~~~~~~---------------~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~  221 (345)
T cd07877         157 CELKILDFGLARHTDDEMT---------------GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  221 (345)
T ss_pred             CCEEEeccccccccccccc---------------ccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999865432110               0123445778887654 46788999999999999999999888643


Q ss_pred             hhh-hHHHHHhccCcC--Cc-ccccc----------cccc----CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          666 EAF-LLNEMASFGSQD--GR-RRIVD----------PVVL----TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       666 ~~~-~~~~~~~~~~~~--~~-~~~~d----------~~~~----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      +.. ....+.......  .. ..+.+          +...    ..........+.+++.+|++.||.+||++.+++.+=
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~  301 (345)
T cd07877         222 DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHA  301 (345)
T ss_pred             CHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcCh
Confidence            321 111111111000  00 00000          0000    000011234578999999999999999999998754

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3e-33  Score=314.08  Aligned_cols=265  Identities=16%  Similarity=0.143  Sum_probs=181.3

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeCC--CcEEEEEEee-----------------ccchhcHHHHHHHHHHHhcCCCCCc
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLEN--GTYVAIRSLT-----------------FLKKYSIQNLKVRLDFLSKLQHPHL  498 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~~--g~~vAvK~l~-----------------~~~~~~~~~~~~E~~~l~~l~H~nI  498 (747)
                      ..++|++.+.||+|+||+||+|..+.  +..+++|.+.                 .........+.+|+.+|++++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            45789999999999999999987432  2223322110                 0111234567899999999999999


Q ss_pred             ceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       499 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                      |++++++...        +..++|+|++. ++|..++.....  ...........|+.|++.||.|||+   .+||||||
T Consensus       226 v~l~~~~~~~--------~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~---~gIiHrDL  293 (501)
T PHA03210        226 LKIEEILRSE--------ANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD---KKLIHRDI  293 (501)
T ss_pred             CcEeEEEEEC--------CeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh---CCeecCCC
Confidence            9999998763        36899999985 477776643210  1123345677899999999999999   89999999


Q ss_pred             CCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHh
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ell  656 (747)
                      ||+|||++.++.+||+|||+++..........           ....++..|++||++....++.++|||||||++|||+
T Consensus       294 KP~NILl~~~~~vkL~DFGla~~~~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell  362 (501)
T PHA03210        294 KLENIFLNCDGKIVLGDFGTAMPFEKEREAFD-----------YGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDML  362 (501)
T ss_pred             CHHHEEECCCCCEEEEeCCCceecCccccccc-----------ccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999976543221100           0134567889999999889999999999999999999


Q ss_pred             hCCC-CCCCCh---hhhHHHHHhccCcCCcccccccc-----------c---cCCCCH-----HHHHHHHHHHhHccCCC
Q 044236          657 VGPI-VTGKGE---AFLLNEMASFGSQDGRRRIVDPV-----------V---LTTCSQ-----ESLSIVVSITNKCICPE  713 (747)
Q Consensus       657 tg~~-p~~~~~---~~~~~~~~~~~~~~~~~~~~d~~-----------~---~~~~~~-----~~~~~~~~l~~~Cl~~d  713 (747)
                      +|.. |+....   ...+.++....... ..+..++.           +   ....+.     .....+.+++.+|++.|
T Consensus       363 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~D  441 (501)
T PHA03210        363 SHDFCPIGDGGGKPGKQLLKIIDSLSVC-DEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFD  441 (501)
T ss_pred             HCCCCCccCCCCCHHHHHHHHHHhcccC-hhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccC
Confidence            9864 443222   12222221111000 00000000           0   000000     11223667889999999


Q ss_pred             CCCCCCHHHHHHH
Q 044236          714 PSSRPSFEDVLWN  726 (747)
Q Consensus       714 P~~RPs~~evl~~  726 (747)
                      |.+|||+.|++.+
T Consensus       442 P~~Rpsa~elL~h  454 (501)
T PHA03210        442 WHLRPGAAELLAL  454 (501)
T ss_pred             cccCcCHHHHhhC
Confidence            9999999999864

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-32  Score=288.15  Aligned_cols=259  Identities=17%  Similarity=0.253  Sum_probs=188.5

Q ss_pred             CCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccch-hcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |++.+.||+|+||.||+|+.. +++.||||++..... .......+|+..+++++ ||||+++++++...        ..
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~--------~~   72 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFREN--------DE   72 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcC--------Cc
Confidence            567788999999999999964 588999999864322 22234557999999999 99999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+ +|+|.+++.... ...++|..+..++.|++.||.|||+   .+++|+||||+||+++.++.+||+|||+++
T Consensus        73 ~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~  147 (283)
T cd07830          73 LYFVFEYM-EGNLYQLMKDRK-GKPFSESVIRSIIYQILQGLAHIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAR  147 (283)
T ss_pred             EEEEEecC-CCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCCEEEeecccce
Confidence            89999999 889998887542 2468999999999999999999999   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~~~  676 (747)
                      .........             ...++..|++||.+. ...++.++||||||+++|||++|+.|+.... ......+...
T Consensus       148 ~~~~~~~~~-------------~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~  214 (283)
T cd07830         148 EIRSRPPYT-------------DYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSV  214 (283)
T ss_pred             eccCCCCcC-------------CCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHh
Confidence            543221110             012344677888764 3457899999999999999999988875432 2222222111


Q ss_pred             cCcCC-------------cccccc---ccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDG-------------RRRIVD---PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~-------------~~~~~d---~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....             ....+.   +.......+.....+.+++.+||+.+|++|||+.|++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         215 LGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             cCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            11000             000000   000000011113568899999999999999999999753

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=5.9e-33  Score=296.30  Aligned_cols=262  Identities=21%  Similarity=0.284  Sum_probs=191.5

Q ss_pred             HHHHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          435 LKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       435 l~~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      +...+++|++.+.||+|+||.||+|+ ..+++.||||++...  .....+.+.+|++++++++||||++++++|...   
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~---   81 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISP---   81 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecC---
Confidence            34567889999999999999999998 457999999988532  223346788899999999999999999988653   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                          ....++||||+ +++|.++++.    ..+++.....++.|+++||+|||+   .+|+||||||+||+++.++.+||
T Consensus        82 ----~~~~~lv~e~~-~~~L~~~~~~----~~~~~~~~~~~~~ql~~aL~~LH~---~~iiH~dl~p~Nili~~~~~~~l  149 (328)
T cd07856          82 ----LEDIYFVTELL-GTDLHRLLTS----RPLEKQFIQYFLYQILRGLKYVHS---AGVVHRDLKPSNILINENCDLKI  149 (328)
T ss_pred             ----CCcEEEEeehh-ccCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEeECCCCCEEe
Confidence                23689999999 5688888763    347888888999999999999999   88999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-  669 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-  669 (747)
                      +|||+++.......               ...+...|.+||.+.. ..++.++|||||||++|||+||+.|+....... 
T Consensus       150 ~dfg~~~~~~~~~~---------------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~  214 (328)
T cd07856         150 CDFGLARIQDPQMT---------------GYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQ  214 (328)
T ss_pred             CccccccccCCCcC---------------CCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            99999864322110               0122345778887655 568899999999999999999998886443211 


Q ss_pred             HHHHHhccCc-----------CCcccccc------ccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQ-----------DGRRRIVD------PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~-----------~~~~~~~d------~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...+......           ....+...      +.......+.....+.+++.+||+.+|++|||+.+++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         215 FSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             HHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            1111100000           00000000      000000001123458899999999999999999999865

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=2.4e-32  Score=289.87  Aligned_cols=243  Identities=23%  Similarity=0.309  Sum_probs=186.1

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      |...+.||+|+||.||+|+. .+|+.||+|++....   ....+.+.+|++++++++|||++++++++...        .
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~   94 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKE--------H   94 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeC--------C
Confidence            55567799999999999985 568999999987432   23345678899999999999999999998773        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+. |++.+++...  ...++|..+..++.|++.|+.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        95 ~~~lv~e~~~-~~l~~~l~~~--~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dl~p~nili~~~~~~kL~dfg~~  168 (313)
T cd06633          95 TAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSA  168 (313)
T ss_pred             EEEEEEecCC-CCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChhhEEECCCCCEEEeecCCC
Confidence            7899999996 5777777543  3468999999999999999999998   78999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      .......                ...++..|++||.+.   ...++.++|||||||++|||++|..|+...+. ......
T Consensus       169 ~~~~~~~----------------~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~  232 (313)
T cd06633         169 SKSSPAN----------------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI  232 (313)
T ss_pred             cccCCCC----------------CccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence            5322110                012345677888763   45688899999999999999999988865432 222222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...   . .     +...   .......+.+++.+||+.+|.+||++.+++..
T Consensus       233 ~~~---~-~-----~~~~---~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         233 AQN---D-S-----PTLQ---SNEWTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             Hhc---C-C-----CCCC---ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            111   0 0     1000   11122347889999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=6.4e-33  Score=289.89  Aligned_cols=258  Identities=18%  Similarity=0.241  Sum_probs=191.5

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |+..+.||+|++|.||+|.. .+++.+|+|+++....  .....+.+|++++++++|+||+++++++...        ..
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--------~~   72 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHK--------GD   72 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccC--------CC
Confidence            56678899999999999985 5789999999874332  2346788899999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++ ++.+++...  ...+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.+||+|||.+.
T Consensus        73 ~~~v~e~~~~-~l~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~df~~~~  146 (283)
T cd05118          73 LYLVFEFMDT-DLYKLIKDR--QRGLPESLIKSYLYQLLQGLAFCHS---HGILHRDLKPENLLINTEGVLKLADFGLAR  146 (283)
T ss_pred             EEEEEeccCC-CHHHHHHhh--cccCCHHHHHHHHHHHHHHHHHHHH---CCeeecCcCHHHEEECCCCcEEEeeeeeeE
Confidence            8999999975 888887653  2468999999999999999999999   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~  676 (747)
                      ..........            ...+...+.+||.+... .++.++|||||||++|||+||+.||...+. +........
T Consensus       147 ~~~~~~~~~~------------~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~  214 (283)
T cd05118         147 SFGSPVRPYT------------HYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRT  214 (283)
T ss_pred             ecCCCccccc------------CccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            6543221000            01233457778877666 688999999999999999999988865432 111111111


Q ss_pred             cCcC---Ccccccc-------------ccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          677 GSQD---GRRRIVD-------------PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       677 ~~~~---~~~~~~d-------------~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....   ......+             ........+.....+.+++.+||+.||.+||++.+++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         215 LGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             cCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            0000   0000000             00001112234566899999999999999999999985

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-32  Score=286.22  Aligned_cols=263  Identities=21%  Similarity=0.237  Sum_probs=189.8

Q ss_pred             CCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccch--hcHHHHHHHHHHHhcC---CCCCcceeeeeeeccCCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKL---QHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l---~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      |++.+.||+|+||.||+|+.+ +++.||||+++....  .....+.+|+.+++++   +||||+++++++...+   ...
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~---~~~   77 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPR---TDR   77 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeecc---CCC
Confidence            567789999999999999965 489999999974322  2234566788777655   6999999999998643   112


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....+++|||+.+ +|.+++.... ...++|..+..++.|+++||.|||+   .+++|+||||+||+++.++.+||+|||
T Consensus        78 ~~~~~l~~e~~~~-~l~~~l~~~~-~~~l~~~~~~~~~~~i~~al~~LH~---~~i~h~~l~~~nili~~~~~~~l~dfg  152 (287)
T cd07838          78 ELKLTLVFEHVDQ-DLATYLSKCP-KPGLPPETIKDLMRQLLRGVDFLHS---HRIVHRDLKPQNILVTSDGQVKIADFG  152 (287)
T ss_pred             CceeEEEehhccc-CHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhEEEccCCCEEEeccC
Confidence            2358999999974 8888876532 2358999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~  674 (747)
                      +++.........             ...++..|.+||.+....++.++|||||||++|||++|..|+.... .+....+.
T Consensus       153 ~~~~~~~~~~~~-------------~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~  219 (287)
T cd07838         153 LARIYSFEMALT-------------SVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIF  219 (287)
T ss_pred             cceeccCCcccc-------------cccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHH
Confidence            986653221110             0123456778888888889999999999999999999988876433 22222222


Q ss_pred             hccCcCCcc----------ccccccc---cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRR----------RIVDPVV---LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~----------~~~d~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .........          .......   .....++....+.+++.+||+.||++||++.|++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         220 DVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             HHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence            111100000          0000000   01112234456789999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-32  Score=294.92  Aligned_cols=268  Identities=17%  Similarity=0.227  Sum_probs=197.5

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|++.+.||+|+||.||+|+. .+++.||||++....  ....+.+.+|+++++.++||||+++++++.....   ....
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~---~~~~   77 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSP---EDFN   77 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCc---cccc
Confidence            477889999999999999995 458999999987533  3445678899999999999999999999876321   1234


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++ +|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus        78 ~~~lv~e~~~~-~l~~~l~~~---~~l~~~~~~~i~~~l~~~l~~LH~---~gi~H~dlkp~nili~~~~~~~L~dfg~~  150 (330)
T cd07834          78 DVYIVTELMET-DLHKVIKSP---QPLTDDHIQYFLYQILRGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLA  150 (330)
T ss_pred             ceEEEecchhh-hHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcccCce
Confidence            68999999984 898888653   369999999999999999999999   78999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~~  675 (747)
                      ............         .....++..|.+||.+... .++.++|||||||++|||++|+.||...... ....+..
T Consensus       151 ~~~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~  221 (330)
T cd07834         151 RGVDPDEDEKGF---------LTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVE  221 (330)
T ss_pred             Eeeccccccccc---------ccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHH
Confidence            765433210000         0011235568889988877 7899999999999999999999998654422 2222211


Q ss_pred             ccCcCC-----------cccccc---ccc---cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          676 FGSQDG-----------RRRIVD---PVV---LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       676 ~~~~~~-----------~~~~~d---~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ......           ....+.   ...   ...........+.+++.+||+.+|++||++.+++.+-
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  290 (330)
T cd07834         222 VLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHP  290 (330)
T ss_pred             hcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCc
Confidence            111000           000000   000   0000112344588999999999999999999999763

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-34  Score=270.78  Aligned_cols=271  Identities=15%  Similarity=0.251  Sum_probs=195.9

Q ss_pred             CCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |....+||+|.||+||+|+ .++|+.||+|++-..  +..-.....+|+.+|..++|+|++.++..|........+....
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            4456789999999999999 456888999876432  3333455678999999999999999999998766555555667


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      +++||++|+. ||.-+|...  ...++..++.+++.++..||.|+|+   ..|+|||+|++|+||+.++.+||+|||++|
T Consensus        99 ~ylVf~~ceh-DLaGlLsn~--~vr~sls~Ikk~Mk~Lm~GL~~iHr---~kilHRDmKaaNvLIt~dgilklADFGlar  172 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSNR--KVRFSLSEIKKVMKGLMNGLYYIHR---NKILHRDMKAANVLITKDGILKLADFGLAR  172 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcCc--cccccHHHHHHHHHHHHHHHHHHHH---hhHHhhcccHhhEEEcCCceEEeecccccc
Confidence            9999999988 898888754  4568889999999999999999999   789999999999999999999999999998


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCCC-CChhhhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVTG-KGEAFLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~~-~~~~~~~~~~~~~  676 (747)
                      ...........     .   |.--.-+..|.+||.+. .+.|+++.|||.-|||+.||.||.+-+. ..+..++..+...
T Consensus       173 ~fs~~~n~~kp-----r---ytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~L  244 (376)
T KOG0669|consen  173 AFSTSKNVVKP-----R---YTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQL  244 (376)
T ss_pred             ceecccccCCC-----C---cccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHH
Confidence            76543322111     1   11112244566777664 4569999999999999999999966554 4444444433322


Q ss_pred             cCcC----C--c-----cccc--cccccCC-C--------CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          677 GSQD----G--R-----RRIV--DPVVLTT-C--------SQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       677 ~~~~----~--~-----~~~~--d~~~~~~-~--------~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ....    +  .     .+.+  +| +... +        +-.-.....+|+.+.+..||.+|+++.+++.+-
T Consensus       245 cGs~tkevWP~~d~lpL~~sie~eP-l~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~  316 (376)
T KOG0669|consen  245 CGSITKEVWPNVDNLPLYQSIELEP-LPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHD  316 (376)
T ss_pred             hccCCcccCCCcccchHHHhccCCC-CCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchh
Confidence            2110    0  0     0000  11 1000 0        000122578899999999999999999997543

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.5e-32  Score=288.43  Aligned_cols=250  Identities=23%  Similarity=0.306  Sum_probs=187.0

Q ss_pred             CCCccccccCCCCeeEEEEEe----CCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~  511 (747)
                      +|++.+.||+|+||.||+++.    .+|+.||+|+++...    ....+.+.+|+.+++++ +|+||+++++++...   
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~---   77 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTD---   77 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecC---
Confidence            477889999999999999985    368999999987432    22345678899999999 599999999887652   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                           ...++||||+++|+|.+++...   ..+++.....++.|+++||.|||+   .+++||||||+|||++.++.+||
T Consensus        78 -----~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl  146 (290)
T cd05613          78 -----TKLHLILDYINGGELFTHLSQR---ERFKEQEVQIYSGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVL  146 (290)
T ss_pred             -----CeEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEECCCCCEEE
Confidence                 4789999999999999998753   358888899999999999999999   88999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChh-h
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-F  668 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~  668 (747)
                      +|||+++..........           ....++..|++||....  ..++.++|||||||++|||++|..|+..... .
T Consensus       147 ~dfg~~~~~~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~  215 (290)
T cd05613         147 TDFGLSKEFHEDEVERA-----------YSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKN  215 (290)
T ss_pred             eeCccceeccccccccc-----------ccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccc
Confidence            99999875433211100           01234456788887754  3467899999999999999999999863211 1


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      ....+......      ..+..    +......+.+++.+||+.||++||     ++.+++.
T Consensus       216 ~~~~~~~~~~~------~~~~~----~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         216 SQAEISRRILK------SEPPY----PQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             cHHHHHHHhhc------cCCCC----CccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence            11111111000      01111    122234478999999999999997     6677665

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-33  Score=271.48  Aligned_cols=248  Identities=22%  Similarity=0.267  Sum_probs=197.8

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|+.++++|+|.||+|..++ ..+|+.+|+|+++..   .+.+......|-++|+..+||.+..|...|..       
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt-------  239 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQT-------  239 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhcc-------
Confidence            4678889999999999999998 567999999999753   23445566789999999999999988755544       


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       .+.+|.||||+.||.|+-+|.+   ...++......+...|+.||.|||+   .+||.||+|.+|.|+|.+|++||+||
T Consensus       240 -~drlCFVMeyanGGeLf~HLsr---er~FsE~RtRFYGaEIvsAL~YLHs---~~ivYRDlKLENLlLDkDGHIKitDF  312 (516)
T KOG0690|consen  240 -QDRLCFVMEYANGGELFFHLSR---ERVFSEDRTRFYGAEIVSALGYLHS---RNIVYRDLKLENLLLDKDGHIKITDF  312 (516)
T ss_pred             -CceEEEEEEEccCceEeeehhh---hhcccchhhhhhhHHHHHHhhhhhh---CCeeeeechhhhheeccCCceEeeec
Confidence             4589999999999999999876   3568888888999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.--....            ..-.+||++.|.|||++....|...+|+|..|||+|||+.|+.||...+.+.+.+.+
T Consensus       313 GLCKE~I~~g~------------t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLI  380 (516)
T KOG0690|consen  313 GLCKEEIKYGD------------TTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELI  380 (516)
T ss_pred             ccchhcccccc------------eeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHH
Confidence            99964221111            011368999999999999999999999999999999999999999876665554433


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      ...         |-..+...+++    ...|+...+..||.+|-     .+.||.+
T Consensus       381 l~e---------d~kFPr~ls~e----AktLLsGLL~kdP~kRLGgGpdDakEi~~  423 (516)
T KOG0690|consen  381 LME---------DLKFPRTLSPE----AKTLLSGLLKKDPKKRLGGGPDDAKEIMR  423 (516)
T ss_pred             Hhh---------hccCCccCCHH----HHHHHHHHhhcChHhhcCCCchhHHHHHh
Confidence            221         11122223344    56677778888999994     4666654

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=1.1e-32  Score=289.12  Aligned_cols=254  Identities=20%  Similarity=0.248  Sum_probs=189.2

Q ss_pred             CCCccccccCCCCeeEEEEEe----CCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~  511 (747)
                      +|++.+.||+|+||.||+++.    .+++.||||.++...    ....+.+.+|++++.++ +||||+++++++..    
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~----   76 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQT----   76 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeec----
Confidence            477788999999999999974    357889999987432    22345678899999999 59999999988765    


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                          ....++||||+++|+|.+++...   ..+++.....++.|+++||.|||+   .+++||||||+||+++.++.++|
T Consensus        77 ----~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~---~~~~H~dl~p~nil~~~~~~~~l  146 (288)
T cd05583          77 ----DTKLHLILDYVNGGELFTHLYQR---EHFTESEVRVYIAEIVLALDHLHQ---LGIIYRDIKLENILLDSEGHVVL  146 (288)
T ss_pred             ----CCEEEEEEecCCCCcHHHHHhhc---CCcCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEE
Confidence                24789999999999999988652   458899999999999999999998   88999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC--CCcCCceeehhHHHHHHhhCCCCCCCChh-h
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR--TKLEDDVYNFGFILLESLVGPIVTGKGEA-F  668 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~  668 (747)
                      +|||+++..........           ....+...|++||......  .+.++||||||+++|||++|..|+..... .
T Consensus       147 ~dfg~~~~~~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  215 (288)
T cd05583         147 TDFGLSKEFLAEEEERA-----------YSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQN  215 (288)
T ss_pred             EECcccccccccccccc-----------ccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccc
Confidence            99999865432211100           0122345677788766554  67899999999999999999998853221 1


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      ...++......      ..+.....+    ...+.+++.+||+.+|++|||+.++...|..
T Consensus       216 ~~~~~~~~~~~------~~~~~~~~~----~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~  266 (288)
T cd05583         216 SQSEISRRILK------SKPPFPKTM----SAEARDFIQKLLEKDPKKRLGANGADEIKNH  266 (288)
T ss_pred             hHHHHHHHHHc------cCCCCCccc----CHHHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence            11111111000      011111222    2347889999999999999998888766653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-32  Score=246.11  Aligned_cols=260  Identities=18%  Similarity=0.202  Sum_probs=185.9

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +|+..++||+|.||+||||+ +++++.||+|+++..+  +.......+|+.+++.++|+|||+++++...        .+
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhs--------dk   74 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS--------DK   74 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhcc--------Cc
Confidence            46667889999999999999 6779999999987543  3334667899999999999999999997654        35


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      .+.+|+|||.. +|.++....  .+.++.......+.|+.+||.|+|+   ..+.|||+||.|.||+.+|+.|++|||++
T Consensus        75 kltlvfe~cdq-dlkkyfdsl--ng~~d~~~~rsfmlqllrgl~fchs---hnvlhrdlkpqnllin~ngelkladfgla  148 (292)
T KOG0662|consen   75 KLTLVFEFCDQ-DLKKYFDSL--NGDLDPEIVRSFMLQLLRGLGFCHS---HNVLHRDLKPQNLLINRNGELKLADFGLA  148 (292)
T ss_pred             eeEEeHHHhhH-HHHHHHHhc--CCcCCHHHHHHHHHHHHhhhhhhhh---hhhhhccCCcceEEeccCCcEEecccchh
Confidence            78999999966 888887654  4468888999999999999999999   78899999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhh-CCCCCCCCh-hhhHHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLV-GPIVTGKGE-AFLLNEMA  674 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~-~~~~~~~~  674 (747)
                      +-..-...          .|..+  .-+..|.+|.++-+ .-|+...|+||-|||+.|+.. |++-|...+ .+++..+.
T Consensus       149 rafgipvr----------cysae--vvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif  216 (292)
T KOG0662|consen  149 RAFGIPVR----------CYSAE--VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIF  216 (292)
T ss_pred             hhcCCceE----------eeece--eeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHH
Confidence            75432111          11111  11233455555544 458899999999999999986 555454433 34444433


Q ss_pred             hccCcC------CccccccccccCCCC---------HHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQD------GRRRIVDPVVLTTCS---------QESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~------~~~~~~d~~~~~~~~---------~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......      .+..+.|-...+.++         +.....-++++...+.-+|.+|.++++.++.
T Consensus       217 ~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqh  283 (292)
T KOG0662|consen  217 RLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQH  283 (292)
T ss_pred             HHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcC
Confidence            322111      122222211111111         2223334567777777799999999987753

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=2.3e-33  Score=271.71  Aligned_cols=269  Identities=20%  Similarity=0.220  Sum_probs=191.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC---C--CcEEEEEEeeccchh--cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE---N--GTYVAIRSLTFLKKY--SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~---~--g~~vAvK~l~~~~~~--~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      ...|+.+..||+|.||.||||+..   +  ...+|||+++..+..  -....-+|+.+++.++|||||.|..++...   
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~---   99 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSH---   99 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhcc---
Confidence            345888999999999999999632   2  237899999855332  234567899999999999999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC---
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENC--PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH---  586 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---  586 (747)
                          ...+++++||.+. ||.+.|+.++  ....++-.....|..||+.|+.|||+   .=|+||||||.|||+..+   
T Consensus       100 ----d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~---NWvlHRDLKPaNIlvmgdgpe  171 (438)
T KOG0666|consen  100 ----DKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHS---NWVLHRDLKPANILVMGDGPE  171 (438)
T ss_pred             ----CceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhh---hheeeccCCcceEEEeccCCc
Confidence                3579999999988 8998886442  23468888999999999999999999   556999999999999877   


Q ss_pred             -CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          587 -RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       587 -~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                       |.+||+|||++|.....-.......         ...-+..|.|||++.+. .||.+.||||.|||+.||+|-++-|..
T Consensus       172 rG~VKIaDlGlaR~~~~plkpl~s~d---------~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g  242 (438)
T KOG0666|consen  172 RGRVKIADLGLARLFNNPLKPLASLD---------PVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKG  242 (438)
T ss_pred             cCeeEeecccHHHHhhccccccccCC---------ceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccc
Confidence             8999999999998765433211110         12234457788877654 599999999999999999998655542


Q ss_pred             Ch-------h---hhHHHHHhccCcCCcccccc----cc-----------ccCCCC--------HHHHHHHHHHHhHccC
Q 044236          665 GE-------A---FLLNEMASFGSQDGRRRIVD----PV-----------VLTTCS--------QESLSIVVSITNKCIC  711 (747)
Q Consensus       665 ~~-------~---~~~~~~~~~~~~~~~~~~~d----~~-----------~~~~~~--------~~~~~~~~~l~~~Cl~  711 (747)
                      .+       .   +++..+......+...+..+    |.           ....++        ..-....++|+.++++
T Consensus       243 ~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~  322 (438)
T KOG0666|consen  243 REEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLT  322 (438)
T ss_pred             hhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhc
Confidence            22       1   22233222222111111111    00           000000        0012237789999999


Q ss_pred             CCCCCCCCHHHHHHHH
Q 044236          712 PEPSSRPSFEDVLWNL  727 (747)
Q Consensus       712 ~dP~~RPs~~evl~~L  727 (747)
                      .||.+|.|+.++++.-
T Consensus       323 yDP~kRIta~qAleh~  338 (438)
T KOG0666|consen  323 YDPIKRITAEQALEHP  338 (438)
T ss_pred             cCchhhccHHHHhccc
Confidence            9999999999998754

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=2.1e-32  Score=293.45  Aligned_cols=272  Identities=17%  Similarity=0.196  Sum_probs=190.1

Q ss_pred             hCCCc-cccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhc--------------HHHHHHHHHHHhcCCCCCcceeee
Q 044236          440 NNFDS-LSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYS--------------IQNLKVRLDFLSKLQHPHLVSLLG  503 (747)
Q Consensus       440 ~~f~~-~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~--------------~~~~~~E~~~l~~l~H~nIv~l~g  503 (747)
                      ++|.. .+.||+|+||.||+|+. .+++.||||+++......              ...+.+|++++++++||||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            44543 46799999999999984 568999999986432211              124678999999999999999999


Q ss_pred             eeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee
Q 044236          504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL  583 (747)
Q Consensus       504 ~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  583 (747)
                      ++...        +..++||||++ |+|.+++..   ...+++.....++.|++.||+|||+   .+|+||||||+||++
T Consensus        88 ~~~~~--------~~~~lv~e~~~-~~l~~~l~~---~~~~~~~~~~~~~~ql~~aL~~LH~---~~i~H~dl~~~nill  152 (335)
T PTZ00024         88 VYVEG--------DFINLVMDIMA-SDLKKVVDR---KIRLTESQVKCILLQILNGLNVLHK---WYFMHRDLSPANIFI  152 (335)
T ss_pred             EEecC--------CcEEEEEeccc-cCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHeEE
Confidence            98763        47899999997 689988864   3458899999999999999999998   889999999999999


Q ss_pred             cCCCcEEEecccccccccccchhcccC--CCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCC
Q 044236          584 DEHRIAKLSDYGISIIMEEHEKLEAKG--EGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPI  660 (747)
Q Consensus       584 d~~~~~kl~DFGla~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~  660 (747)
                      +.++.+||+|||+++............  .............++..|.+||.+.+. .++.++|||||||++|||++|+.
T Consensus       153 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~  232 (335)
T PTZ00024        153 NSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKP  232 (335)
T ss_pred             CCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            999999999999987654211110000  000000011112235568888877653 46889999999999999999999


Q ss_pred             CCCCChh-hhHHHHHhccCcCCcccc-----------cccccc---CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          661 VTGKGEA-FLLNEMASFGSQDGRRRI-----------VDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       661 p~~~~~~-~~~~~~~~~~~~~~~~~~-----------~d~~~~---~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      |+...+. ..+..+............           ..+...   ..........+.+++.+||+.+|++|||+.|++.
T Consensus       233 p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        233 LFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence            8865432 222222221111000000           000000   0001122445889999999999999999999986


Q ss_pred             H
Q 044236          726 N  726 (747)
Q Consensus       726 ~  726 (747)
                      .
T Consensus       313 ~  313 (335)
T PTZ00024        313 H  313 (335)
T ss_pred             C
Confidence            4

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-33  Score=276.77  Aligned_cols=268  Identities=20%  Similarity=0.301  Sum_probs=208.9

Q ss_pred             HHHHHHHhhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeee
Q 044236          432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGH  504 (747)
Q Consensus       432 ~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~  504 (747)
                      ..++.....+++...++-+|.||.||+|.|.      +.+.|-||.++.. +......+..|.-++..+.|||+....|+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            3455556667888888999999999999653      2345667776532 34455678889989999999999999999


Q ss_pred             eeccCCCCCCCCceEEEEEeccCCCCcccccccC-----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCC
Q 044236          505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN-----CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN  579 (747)
Q Consensus       505 ~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~-----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~  579 (747)
                      +++.       ....+++|.|+.-|+|..+|...     ...+.++-.+...++.|++.|++|||.   .+|||.||.++
T Consensus       356 ~ie~-------~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~---~~ViHkDiAaR  425 (563)
T KOG1024|consen  356 SIED-------YATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHN---HGVIHKDIAAR  425 (563)
T ss_pred             Eeec-------cCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHh---cCcccchhhhh
Confidence            9874       34779999999999999999732     223456777788899999999999999   89999999999


Q ss_pred             ceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-C
Q 044236          580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-G  658 (747)
Q Consensus       580 NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g  658 (747)
                      |++||+..++||+|-.++|.+-.........    ...      +...||++|.+....|+..+|||||||+||||+| |
T Consensus       426 NCvIdd~LqVkltDsaLSRDLFP~DYhcLGD----nEn------RPvkWMslEal~n~~yssasDvWsfGVllWELmtlg  495 (563)
T KOG1024|consen  426 NCVIDDQLQVKLTDSALSRDLFPGDYHCLGD----NEN------RPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLG  495 (563)
T ss_pred             cceehhheeEEeccchhccccCcccccccCC----CCC------CcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcC
Confidence            9999999999999999998765443322111    111      1235788888999999999999999999999998 6


Q ss_pred             CCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       659 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      +.|+.+-+++.+..+...+..     +..|   -.||+    ++..+|..||+.+|++||+++|++..|..+-
T Consensus       496 ~~PyaeIDPfEm~~ylkdGyR-----laQP---~NCPD----eLf~vMacCWallpeeRPsf~Qlv~cLseF~  556 (563)
T KOG1024|consen  496 KLPYAEIDPFEMEHYLKDGYR-----LAQP---FNCPD----ELFTVMACCWALLPEERPSFSQLVICLSEFH  556 (563)
T ss_pred             CCCccccCHHHHHHHHhccce-----ecCC---CCCcH----HHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence            999988777766655443221     1111   23444    4899999999999999999999999998763

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=2.1e-32  Score=282.40  Aligned_cols=250  Identities=20%  Similarity=0.264  Sum_probs=186.4

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-----chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-----KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      +|.+.+.||+|+||.||+++. ..+..+++|.++..     .......+.+|+.++++++||||+++++++.+.      
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~------   74 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLER------   74 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcC------
Confidence            477888999999999999985 33555666665431     222344677899999999999999999988763      


Q ss_pred             CCceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ...++||||+++++|.+++... .....+++..++.++.|+++||.|||+   .+++|+||||+||+++. +.+||+|
T Consensus        75 --~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~~l~~~nili~~-~~~~l~d  148 (260)
T cd08222          75 --DAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ---RRILHRDLKAKNIFLKN-NLLKIGD  148 (260)
T ss_pred             --CceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH---cCccccCCChhheEeec-CCEeecc
Confidence              3689999999999999888642 123568999999999999999999999   89999999999999975 5699999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++..........            ...++..|.+||......++.++||||||+++|||++|..|+........  .
T Consensus       149 ~g~~~~~~~~~~~~~------------~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~--~  214 (260)
T cd08222         149 FGVSRLLMGSCDLAT------------TFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSV--V  214 (260)
T ss_pred             cCceeecCCCccccc------------CCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHH--H
Confidence            999866532211100            01234456778877777788999999999999999999988864332211  1


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..... .     ..+.    .+......+.+++.+||..+|++||++.|+++.
T Consensus       215 ~~~~~-~-----~~~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  257 (260)
T cd08222         215 LRIVE-G-----PTPS----LPETYSRQLNSIMQSMLNKDPSLRPSAAEILRN  257 (260)
T ss_pred             HHHHc-C-----CCCC----CcchhcHHHHHHHHHHhcCChhhCcCHHHHhhC
Confidence            11110 0     0111    122334458899999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3e-33  Score=283.63  Aligned_cols=245  Identities=19%  Similarity=0.242  Sum_probs=193.5

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .+.|..-++||+|+||.||-++ ..+|+++|.|++...   ++.......+|-.+|.+++.+.||.+-.+|..       
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeT-------  256 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFET-------  256 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecC-------
Confidence            3557888999999999999998 467999999988632   23344566789999999999999999766655       


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       .+.+++||..|.||||.-+|.+.++ ..++......++.+|+.||++||.   ..||.||+||+|||+|++|+++|+|.
T Consensus       257 -kd~LClVLtlMNGGDLkfHiyn~g~-~gF~e~ra~FYAAEi~cGLehlH~---~~iVYRDLKPeNILLDd~GhvRISDL  331 (591)
T KOG0986|consen  257 -KDALCLVLTLMNGGDLKFHIYNHGN-PGFDEQRARFYAAEIICGLEHLHR---RRIVYRDLKPENILLDDHGHVRISDL  331 (591)
T ss_pred             -CCceEEEEEeecCCceeEEeeccCC-CCCchHHHHHHHHHHHhhHHHHHh---cceeeccCChhheeeccCCCeEeecc
Confidence             3589999999999999999876543 569999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH-HH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN-EM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~-~~  673 (747)
                      |+|..+........             -.||..|||||++..+.|+...|+||+||++|||+.|+.||.......-. ++
T Consensus       332 GLAvei~~g~~~~~-------------rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEv  398 (591)
T KOG0986|consen  332 GLAVEIPEGKPIRG-------------RVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEV  398 (591)
T ss_pred             ceEEecCCCCcccc-------------ccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHH
Confidence            99976655433221             14577899999999999999999999999999999999999643221111 11


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP  718 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  718 (747)
                      .+..       .-|+   .++++..++++.++....++.||++|-
T Consensus       399 drr~-------~~~~---~ey~~kFS~eakslc~~LL~Kdp~~RL  433 (591)
T KOG0986|consen  399 DRRT-------LEDP---EEYSDKFSEEAKSLCEGLLTKDPEKRL  433 (591)
T ss_pred             HHHH-------hcch---hhcccccCHHHHHHHHHHHccCHHHhc
Confidence            1111       1111   233444455577777888899999985

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.98  E-value=2.4e-32  Score=293.59  Aligned_cols=270  Identities=17%  Similarity=0.225  Sum_probs=190.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC------
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD------  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~------  512 (747)
                      .+|.+.+.||+|+||.||+|.. .+|+.||+|++...+....+.+.+|++++++++||||+++++++...+...      
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5788899999999999999984 568999999997665555677889999999999999999998876532100      


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec-CCCcEEE
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD-EHRIAKL  591 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl  591 (747)
                      .......++||||++ ++|.+++..    ..+++.....++.|++.||.|||+   .+|+||||||+||+++ .++.+|+
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH~---~givH~dikp~Nili~~~~~~~kl  156 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLEQ----GPLSEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFINTEDLVLKI  156 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCceEEE
Confidence            001235799999997 588887753    358899999999999999999998   7899999999999997 4567899


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hh
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FL  669 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~  669 (747)
                      +|||+++..........  ..       ....++..|.+||.+.. ..++.++|||||||++|||++|+.||..... ..
T Consensus       157 ~dfg~~~~~~~~~~~~~--~~-------~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~  227 (342)
T cd07854         157 GDFGLARIVDPHYSHKG--YL-------SEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQ  227 (342)
T ss_pred             CCcccceecCCcccccc--cc-------ccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            99999976532211100  00       00123456778886543 5578899999999999999999998864332 11


Q ss_pred             HHHHHhccCcC---Cccc--------cc----cccc-cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQD---GRRR--------IV----DPVV-LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~---~~~~--------~~----d~~~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...........   ....        ..    .+.. .....+.....+.+++.+||+.||++|||+.|++..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         228 MQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             HHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCC
Confidence            11111100000   0000        00    0000 000011223457899999999999999999999853

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.98  E-value=2.7e-32  Score=285.02  Aligned_cols=258  Identities=19%  Similarity=0.255  Sum_probs=190.1

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |+..+.||+|+||.||+|+. .+++.||+|.+....  ....+.+..|++++++++|+||+++++++...        ..
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--------~~   72 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTE--------RK   72 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcC--------Cc
Confidence            45677899999999999995 459999999987542  33346778899999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||++ ++|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||+|+||+++.++.+||+|||+++
T Consensus        73 ~~~v~e~~~-~~l~~~i~~~--~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~  146 (282)
T cd07829          73 LYLVFEYCD-MDLKKYLDKR--PGPLSPNLIKSIMYQLLRGLAYCHS---HRILHRDLKPQNILINRDGVLKLADFGLAR  146 (282)
T ss_pred             eEEEecCcC-cCHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChheEEEcCCCCEEEecCCccc
Confidence            899999998 5899998753  2468999999999999999999999   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~  676 (747)
                      ..........            .......+++||.+... .++.++|||||||++||+++|+.|+..... ..+..+...
T Consensus       147 ~~~~~~~~~~------------~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~  214 (282)
T cd07829         147 AFGIPLRTYT------------HEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQI  214 (282)
T ss_pred             ccCCCccccC------------ccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Confidence            5432211000            01123456788877655 788999999999999999999888865432 122222111


Q ss_pred             cCcCC------------ccccc---cccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          677 GSQDG------------RRRIV---DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       677 ~~~~~------------~~~~~---d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .....            .....   .........+.....+.+++.+||..+|++||++.+++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         215 LGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             hCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            10000            00000   000000001112456899999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.98  E-value=2.6e-32  Score=284.75  Aligned_cols=258  Identities=20%  Similarity=0.315  Sum_probs=195.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|...+.||+|+||.||+|+. .+|+.||+|++...   .....+.+.+|.+++++++ ||||+++++++...      
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~------   74 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDE------   74 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCC------
Confidence            3688889999999999999985 47999999998642   2233467888999999998 99999999988663      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++++||
T Consensus        75 --~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~ql~~~l~~Lh~---~~~~H~dl~~~ni~i~~~~~~~l~df  146 (280)
T cd05581          75 --ENLYFVLEYAPNGELLQYIRKY---GSLDEKCTRFYAAEILLALEYLHS---KGIIHRDLKPENILLDKDMHIKITDF  146 (280)
T ss_pred             --ceEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEecCC
Confidence              4789999999999999999763   369999999999999999999998   78999999999999999999999999


Q ss_pred             cccccccccchhcccC--------CCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh
Q 044236          595 GISIIMEEHEKLEAKG--------EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE  666 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~  666 (747)
                      |++.............        .............+...|.+||......++.++||||||++++|+++|..|+....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  226 (280)
T cd05581         147 GTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN  226 (280)
T ss_pred             ccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc
Confidence            9987554322110000        00000011112234556788888877788999999999999999999999987544


Q ss_pred             hhhH-HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH----HHHHH
Q 044236          667 AFLL-NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF----EDVLW  725 (747)
Q Consensus       667 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~----~evl~  725 (747)
                      .... ..+...          .    ...+......+.+++.+||+.+|.+||++    .++++
T Consensus       227 ~~~~~~~~~~~----------~----~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         227 EYLTFQKILKL----------E----YSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             HHHHHHHHHhc----------C----CCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            2221 111100          0    01122223448899999999999999999    77664

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.98  E-value=2e-32  Score=294.22  Aligned_cols=263  Identities=16%  Similarity=0.224  Sum_probs=191.2

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|++.+.||+|+||.||+|. ..+|+.||||++...  .......+.+|++++++++||||+++++++......  .
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~--~   90 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSL--D   90 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccc--c
Confidence            45679999999999999999998 567999999998532  222345678999999999999999999988653211  1


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++||||+ +++|.+++..    ..+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~----~~l~~~~~~~i~~qi~~al~~LH~---~gi~H~dlkp~Nill~~~~~~kl~df  162 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKH----EKLSEDRIQFLVYQMLKGLKYIHA---AGIIHRDLKPGNLAVNEDCELKILDF  162 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeec
Confidence            123579999999 6789888753    358999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNE  672 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~  672 (747)
                      |+++.......               ...++..|++||.+.. ..++.++|||||||++||+++|+.|+...... ....
T Consensus       163 g~~~~~~~~~~---------------~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~  227 (343)
T cd07880         163 GLARQTDSEMT---------------GYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLME  227 (343)
T ss_pred             ccccccccCcc---------------ccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence            99865432110               0123445778887654 45788999999999999999999998754321 1111


Q ss_pred             HHhccCcCC------------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDG------------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~------------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........                  ......+.+ ....+.....+.+++.+|++.||.+|||+.+++..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~  298 (343)
T cd07880         228 IMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDF-RSLLPNANPLAVNVLEKMLVLDAESRITAAEALAH  298 (343)
T ss_pred             HHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchH-HHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            111100000                  000000000 00111223347899999999999999999999853

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.98  E-value=4.2e-32  Score=290.63  Aligned_cols=267  Identities=19%  Similarity=0.221  Sum_probs=189.5

Q ss_pred             CCCccccccCCCCeeEEEEEe-CC--CcEEEEEEeecc--chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-EN--GTYVAIRSLTFL--KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~--g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      +|.+.+.||+|+||.||+++. ..  +..||||++...  .....+.+.+|+++++++ +||||+++++++....    .
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~----~   76 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFP----G   76 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeecc----c
Confidence            477788999999999999995 34  789999998642  222346678899999999 5999999998765421    1


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++++||+. ++|.+++..   ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus        77 ~~~~~~~~~e~~~-~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~---~givH~dlkp~Nili~~~~~~kl~Df  149 (332)
T cd07857          77 NFNELYLYEELME-ADLHQIIRS---GQPLTDAHFQSFIYQILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICDF  149 (332)
T ss_pred             cCCcEEEEEeccc-CCHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHeEEcCCCCEEeCcC
Confidence            1346789999986 589888864   3458999999999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNE  672 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~  672 (747)
                      |+++...........  .      .....++..|++||.... ..++.++|||||||++|||++|+.|+...+. .....
T Consensus       150 g~a~~~~~~~~~~~~--~------~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~  221 (332)
T cd07857         150 GLARGFSENPGENAG--F------MTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQ  221 (332)
T ss_pred             CCceecccccccccc--c------ccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHH
Confidence            999765432211000  0      001234567888997654 4688999999999999999999988865432 11111


Q ss_pred             HHhccCcC---Ccccc--------------ccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQD---GRRRI--------------VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~---~~~~~--------------~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +.......   ....+              ..........+.....+.+++.+|++.||.+|||+.|++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         222 ILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             HHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            11110000   00000              00000000111123458899999999999999999999853

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.98  E-value=1.5e-32  Score=266.81  Aligned_cols=266  Identities=17%  Similarity=0.221  Sum_probs=202.1

Q ss_pred             CHHHHHHHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeecc
Q 044236          431 YLEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIES  508 (747)
Q Consensus       431 ~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~  508 (747)
                      +++++.+.|+     +.||+|+|+.|--++ ..+|..+|||++..........+.+|++++... .|+||++|+.+|.+.
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd  148 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDD  148 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhccc
Confidence            4677777775     679999999999998 789999999999877666778889999999887 599999999999873


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC--
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH--  586 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~--  586 (747)
                              ..+|||||-|.||+|..+|+++   ..+++.++.+++.+||.||.|||.   ++|.|||+||+|||-...  
T Consensus       149 --------~~FYLVfEKm~GGplLshI~~~---~~F~E~EAs~vvkdia~aLdFlH~---kgIAHRDlKPENiLC~~pn~  214 (463)
T KOG0607|consen  149 --------TRFYLVFEKMRGGPLLSHIQKR---KHFNEREASRVVKDIASALDFLHT---KGIAHRDLKPENILCESPNK  214 (463)
T ss_pred             --------ceEEEEEecccCchHHHHHHHh---hhccHHHHHHHHHHHHHHHHHHhh---cCcccccCCccceeecCCCC
Confidence                    4899999999999999999874   458999999999999999999999   899999999999999644  


Q ss_pred             -CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCC
Q 044236          587 -RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPI  660 (747)
Q Consensus       587 -~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~  660 (747)
                       .-+||+||-+..-+......     .+..+.....++|.+.+||||+..     ...|+.++|.||+|||+|-|+.|.+
T Consensus       215 vsPvKiCDfDLgSg~k~~~~~-----spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYp  289 (463)
T KOG0607|consen  215 VSPVKICDFDLGSGIKLNNDC-----SPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYP  289 (463)
T ss_pred             cCceeeeccccccccccCCCC-----CCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCC
Confidence             35899999987443221111     123333445578889999999774     3468999999999999999999988


Q ss_pred             CCCCChhh-----------hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          661 VTGKGEAF-----------LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       661 p~~~~~~~-----------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ||...-..           .-+...-...+++--+.+|..     ....+.+..+++...+..||.+|-++.+++.
T Consensus       290 PFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkd-----WahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  290 PFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKD-----WAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             CccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhh-----hHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence            88632111           000000000112222233322     2334555777888888899999999988876

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2e-32  Score=294.28  Aligned_cols=263  Identities=16%  Similarity=0.237  Sum_probs=191.2

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|++.+.||+|+||.||+|+. .+++.||||++...  .....+.+.+|+.++++++||||+++++++...+.  ..
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~   90 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASS--LE   90 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccc--cc
Confidence            457899999999999999999995 46889999998642  22334567789999999999999999987765321  01


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++|+||+ +++|.+++..    ..+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        91 ~~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nill~~~~~~kL~df  162 (343)
T cd07851          91 DFQDVYLVTHLM-GADLNNIVKC----QKLSDDHIQFLVYQILRGLKYIHS---AGIIHRDLKPSNIAVNEDCELKILDF  162 (343)
T ss_pred             ccccEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEccc
Confidence            123589999999 5699888864    358999999999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNE  672 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~  672 (747)
                      |++........               ...++..|++||.... ..++.++|||||||++||++||+.||...... .+..
T Consensus       163 g~~~~~~~~~~---------------~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~  227 (343)
T cd07851         163 GLARHTDDEMT---------------GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKR  227 (343)
T ss_pred             ccccccccccc---------------CCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Confidence            99865432110               0122345677887644 36788999999999999999999888644322 1222


Q ss_pred             HHhccCcCC------------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDG------------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~------------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +........                  ......+... .........+.+++.+||+.+|++|||+.||+..
T Consensus       228 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         228 IMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFK-EVFSGANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             HHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHH-HHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence            111110000                  0000000000 0001124568899999999999999999999863

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-32  Score=277.67  Aligned_cols=261  Identities=19%  Similarity=0.253  Sum_probs=191.2

Q ss_pred             CCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc-------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK-------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~-------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      +|-.+++||+|||++||||. +...+.||||+-...+       ..-.+...+|..|.+.|.||.||++|+|+.-.    
T Consensus       464 RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslD----  539 (775)
T KOG1151|consen  464 RYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLD----  539 (775)
T ss_pred             HHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeec----
Confidence            45567889999999999998 6678999999865322       12235567899999999999999999999753    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec---CCCcE
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD---EHRIA  589 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~  589 (747)
                         .+.+|-|+|||+|.||+-||+.+   ..+++.++..|+.||+.||.||.+.. ++|||-||||.|||+-   ..|.+
T Consensus       540 ---tdsFCTVLEYceGNDLDFYLKQh---klmSEKEARSIiMQiVnAL~YLNEik-pPIIHYDLKPgNILLv~GtacGeI  612 (775)
T KOG1151|consen  540 ---TDSFCTVLEYCEGNDLDFYLKQH---KLMSEKEARSIIMQIVNALKYLNEIK-PPIIHYDLKPGNILLVNGTACGEI  612 (775)
T ss_pred             ---cccceeeeeecCCCchhHHHHhh---hhhhHHHHHHHHHHHHHHHHHHhccC-CCeeeeccCCccEEEecCccccee
Confidence               35789999999999999999864   46899999999999999999999754 6899999999999994   46889


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec----cCCCcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI----QRTKLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      ||+|||++++|++.......+.....     ..+|+..|.+||.+.-    .+.+.|+||||.|||+|.++.|+.||+..
T Consensus       613 KITDFGLSKIMdddSy~~vdGmeLTS-----QgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhn  687 (775)
T KOG1151|consen  613 KITDFGLSKIMDDDSYNSVDGMELTS-----QGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHN  687 (775)
T ss_pred             EeeecchhhhccCCccCcccceeeec-----ccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCc
Confidence            99999999999765432221110000     0123344455554432    35789999999999999999999999864


Q ss_pred             hh--hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          666 EA--FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       666 ~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..  +++.+    ..--...++--|.     -+....+..+++.+|+++.-++|....++...
T Consensus       688 qsQQdILqe----NTIlkAtEVqFP~-----KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~d  741 (775)
T KOG1151|consen  688 QSQQDILQE----NTILKATEVQFPP-----KPVVSSEAKAFIRRCLAYRKEDRIDVQQLACD  741 (775)
T ss_pred             hhHHHHHhh----hchhcceeccCCC-----CCccCHHHHHHHHHHHHhhhhhhhhHHHHccC
Confidence            32  22221    1111111111111     11223347789999999999999998887653

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.97  E-value=1.3e-31  Score=309.98  Aligned_cols=147  Identities=25%  Similarity=0.409  Sum_probs=128.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.||||+++...   ......+.+|+.+++.++||||+++++++...      
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~------   76 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSA------   76 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEEC------
Confidence            35788999999999999999995 468999999987432   23346788999999999999999999888653      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...   ..+++..++.|+.||+.||.|||+   .+||||||||+|||++.++.+||+||
T Consensus        77 --~~~~lVmEy~~g~~L~~li~~~---~~l~~~~~~~i~~qil~aL~yLH~---~gIiHrDLKP~NILl~~~g~vkL~DF  148 (669)
T cd05610          77 --NNVYLVMEYLIGGDVKSLLHIY---GYFDEEMAVKYISEVALALDYLHR---HGIIHRDLKPDNMLISNEGHIKLTDF  148 (669)
T ss_pred             --CEEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCccHHHEEEcCCCCEEEEeC
Confidence              4799999999999999998753   358889999999999999999999   78999999999999999999999999


Q ss_pred             ccccc
Q 044236          595 GISII  599 (747)
Q Consensus       595 Gla~~  599 (747)
                      |+++.
T Consensus       149 Gls~~  153 (669)
T cd05610         149 GLSKV  153 (669)
T ss_pred             CCCcc
Confidence            99863

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.1e-31  Score=271.80  Aligned_cols=236  Identities=23%  Similarity=0.274  Sum_probs=183.9

Q ss_pred             ccCCCCeeEEEEEeC-CCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          448 MGEGSRGKLYKGRLE-NGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       448 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ||+|+||.||++... +++.+|+|.+....   ......+..|++++++++||||+++++.+..        ....++||
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--------~~~~~~v~   72 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQT--------EEKLYLVL   72 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeec--------CCeeEEEE
Confidence            699999999999954 58999999987532   2245678899999999999999999988865        34789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  603 (747)
                      ||+++++|.+++...   ..+++.....++.|++.|+.|||+   .+++|+||||+||+++.++.++|+|||++......
T Consensus        73 e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lh~---~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~  146 (250)
T cd05123          73 EYAPGGELFSHLSKE---GRFSEERARFYAAEIVLALEYLHS---LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSE  146 (250)
T ss_pred             ecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcceEEEcCCCcEEEeecCcceecccC
Confidence            999999999998753   358999999999999999999999   88999999999999999999999999998654332


Q ss_pred             chhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      ....            ....+...|.+||.......+.++|+||||+++||+++|+.|+...+..........   .   
T Consensus       147 ~~~~------------~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~---~---  208 (250)
T cd05123         147 GSRT------------NTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILK---D---  208 (250)
T ss_pred             CCcc------------cCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhc---C---
Confidence            1100            011234457778887777788999999999999999999999975543221111110   0   


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED  722 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~e  722 (747)
                         ...    .+......+.+++.+||..||++||++.+
T Consensus       209 ---~~~----~~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         209 ---PLR----FPEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             ---CCC----CCCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence               011    11122344789999999999999999943

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-31  Score=291.99  Aligned_cols=266  Identities=21%  Similarity=0.342  Sum_probs=209.5

Q ss_pred             cCHHHHHHHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeec
Q 044236          430 FYLEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIE  507 (747)
Q Consensus       430 ~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~  507 (747)
                      ..++.+...++-|.+.+.||.|.+|.||+++ .++|+.+|||++..... ..+++..|.++++.. .|||++.+||++..
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-~deEiE~eynil~~~~~hpnv~~fyg~~~k   87 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-EEEEIELEYNMLKKYSHHPNVATFYGAFIK   87 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-ccHHHHHHHHHHHhccCCCCcceEEEEEEE
Confidence            3444555567778999999999999999999 67899999999875443 336677889999888 59999999999987


Q ss_pred             cCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       508 ~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                      .+   ...++++|||||||.+|+..+++++.. ...+.|..+..|++.+++|+.+||.   ..++|||||-.|||++.++
T Consensus        88 ~~---~~~~DqLWLVMEfC~gGSVTDLVKn~~-g~rl~E~~IaYI~re~lrgl~HLH~---nkviHRDikG~NiLLT~e~  160 (953)
T KOG0587|consen   88 KD---PGNGDQLWLVMEFCGGGSVTDLVKNTK-GNRLKEEWIAYILREILRGLAHLHN---NKVIHRDIKGQNVLLTENA  160 (953)
T ss_pred             ec---CCCCCeEEEEeeccCCccHHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHhh---cceeeecccCceEEEeccC
Confidence            54   356789999999999999999988654 5679999999999999999999999   7889999999999999999


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-----CCCcCCceeehhHHHHHHhhCCCCC
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-----RTKLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----~~s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                      .+|+.|||++..+........            ...|++.|||||++...     .|+..+|+||+|++..||.-|.+|.
T Consensus       161 ~VKLvDFGvSaQldsT~grRn------------T~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl  228 (953)
T KOG0587|consen  161 EVKLVDFGVSAQLDSTVGRRN------------TFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPL  228 (953)
T ss_pred             cEEEeeeeeeeeeeccccccc------------CcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCc
Confidence            999999999866542111100            13567789999998753     3678999999999999999998887


Q ss_pred             CCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      -+....  ..+..+      .+-..|.+  .-+..+.+++-+++..|+..|-.+||++.++++
T Consensus       229 ~DmHPm--raLF~I------pRNPPPkL--krp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  229 CDMHPM--RALFLI------PRNPPPKL--KRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             cCcchh--hhhccC------CCCCCccc--cchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence            542211  111111      11111222  235678888999999999999999999999875

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-32  Score=272.35  Aligned_cols=239  Identities=21%  Similarity=0.256  Sum_probs=189.3

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .+|..+.+||+|+||+|.+|..+ +.+.+|||+++..   +..+.+....|-++|.-- +-|.++++..+|..       
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQT-------  421 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQT-------  421 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhh-------
Confidence            46888999999999999999854 4788999999743   233445556677777665 57899999887765       


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       .+.+|.||||+.+|+|.-++++-   +.+.+..+..+|.+||-||-|||+   ++||.||||..||++|.+|++||+||
T Consensus       422 -mDRLyFVMEyvnGGDLMyhiQQ~---GkFKEp~AvFYAaEiaigLFFLh~---kgIiYRDLKLDNvmLd~eGHiKi~DF  494 (683)
T KOG0696|consen  422 -MDRLYFVMEYVNGGDLMYHIQQV---GKFKEPVAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADF  494 (683)
T ss_pred             -hhheeeEEEEecCchhhhHHHHh---cccCCchhhhhhHHHHHHhhhhhc---CCeeeeeccccceEeccCCceEeeec
Confidence             45899999999999999998863   457778889999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.---...            ....+|+++.|.|||++.++.|+..+|+|||||+||||+.|++||+..+.+.+...+
T Consensus       495 GmcKEni~~~~------------TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI  562 (683)
T KOG0696|consen  495 GMCKENIFDGV------------TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAI  562 (683)
T ss_pred             ccccccccCCc------------ceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence            99863211111            112378999999999999999999999999999999999999999877665543322


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCC
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR  717 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R  717 (747)
                      .-.           .  -.+|...+.+..++.+..+...|.+|
T Consensus       563 ~eh-----------n--vsyPKslSkEAv~ickg~ltK~P~kR  592 (683)
T KOG0696|consen  563 MEH-----------N--VSYPKSLSKEAVAICKGLLTKHPGKR  592 (683)
T ss_pred             HHc-----------c--CcCcccccHHHHHHHHHHhhcCCccc
Confidence            110           0  12334444556777778888899988

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.97  E-value=5.6e-31  Score=289.43  Aligned_cols=270  Identities=15%  Similarity=0.201  Sum_probs=177.0

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-----------------CCCcEEEEEEeeccchhcHHH--------------HHHH
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-----------------ENGTYVAIRSLTFLKKYSIQN--------------LKVR  486 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-----------------~~g~~vAvK~l~~~~~~~~~~--------------~~~E  486 (747)
                      ..++|++.++||+|+||.||+|..                 ..++.||||+++.......++              ...|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467899999999999999999963                 235689999987543322222              3446


Q ss_pred             HHHHhcCCCCCc-----ceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCC---------------------C
Q 044236          487 LDFLSKLQHPHL-----VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC---------------------P  540 (747)
Q Consensus       487 ~~~l~~l~H~nI-----v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------------------~  540 (747)
                      +.++.+++|.++     +++++||..............+|||||+++|+|.++++...                     .
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            777778876654     77888886532111122346899999999999999886421                     1


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccc
Q 044236          541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL  620 (747)
Q Consensus       541 ~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~  620 (747)
                      ...++|..+..++.|+++||.|||+   .+|+||||||+|||++.++.+||+|||+++.+.......       ..++  
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~---~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~-------~~~g--  370 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHR---IGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFN-------PLYG--  370 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccC-------cccc--
Confidence            1235678889999999999999999   789999999999999999999999999996543221110       0001  


Q ss_pred             eeeecCCcceeeeeeccC--------------------C--CcCCceeehhHHHHHHhhCCC-CCCCChhhhHHHHHhcc
Q 044236          621 FICRTSAENVVIVVDIQR--------------------T--KLEDDVYNFGFILLESLVGPI-VTGKGEAFLLNEMASFG  677 (747)
Q Consensus       621 ~~~~~~~~~~~e~~~~~~--------------------~--s~k~DVwSfGvvl~Elltg~~-p~~~~~~~~~~~~~~~~  677 (747)
                        ..++.|++||.+....                    |  ..+.||||+||++|||++|.. |+....... .+.....
T Consensus       371 --~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~-~~~~~~~  447 (507)
T PLN03224        371 --MLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFN-TELRQYD  447 (507)
T ss_pred             --CCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhh-hHHhhcc
Confidence              1134566676654221                    1  235799999999999999964 553211110 0000000


Q ss_pred             Cc-----CCccccccccccCCCCHHHHHHHHHHHhHccCCCC---CCCCCHHHHHHH
Q 044236          678 SQ-----DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEP---SSRPSFEDVLWN  726 (747)
Q Consensus       678 ~~-----~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP---~~RPs~~evl~~  726 (747)
                      ..     .......+-...    ........+++.+++..+|   .+|+|+.|++.+
T Consensus       448 ~~~~~~r~~~~~~~~~~~~----d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        448 NDLNRWRMYKGQKYDFSLL----DRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             chHHHHHhhcccCCCcccc----cccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            00     000000111111    1223447888888888765   789999999864

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-31  Score=267.70  Aligned_cols=259  Identities=20%  Similarity=0.240  Sum_probs=195.1

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-C-C----CcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-H-P----HLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H-~----nIv~l~g~~~~~~~~  511 (747)
                      +++|.+...+|+|.||+|-++. .+.+..||||+++...+. .+..+-|+++++++. + |    -+|.+.+||..    
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kY-reAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdy----  162 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKY-REAALIEIEVLQKINESDPNGKFRCVQMRDWFDY----  162 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHH-hhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhc----
Confidence            6789999999999999999998 455899999999865544 345567999999993 2 2    36788777765    


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC------
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE------  585 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~------  585 (747)
                          .++.|||+|.| |-|+++++..+ ...+++...+..++.|++++++|||+   .+++|-||||+|||+-.      
T Consensus       163 ----rghiCivfell-G~S~~dFlk~N-~y~~fpi~~ir~m~~QL~~sv~fLh~---~kl~HTDLKPENILfvss~~~~~  233 (415)
T KOG0671|consen  163 ----RGHICIVFELL-GLSTFDFLKEN-NYIPFPIDHIRHMGYQLLESVAFLHD---LKLTHTDLKPENILFVSSEYFKT  233 (415)
T ss_pred             ----cCceEEEEecc-ChhHHHHhccC-CccccchHHHHHHHHHHHHHHHHHHh---cceeecCCChheEEEeccceEEE
Confidence                35899999998 55999999864 35578888999999999999999999   89999999999999932      


Q ss_pred             --------------CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHH
Q 044236          586 --------------HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI  651 (747)
Q Consensus       586 --------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvv  651 (747)
                                    +..+||.|||.|+...+...               .+..|.-|.|||++.+..++.++||||+|||
T Consensus       234 ~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs---------------~iVsTRHYRAPEViLgLGwS~pCDvWSiGCI  298 (415)
T KOG0671|consen  234 YNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHS---------------TIVSTRHYRAPEVILGLGWSQPCDVWSIGCI  298 (415)
T ss_pred             eccCCccceeccCCCcceEEEecCCcceeccCcc---------------eeeeccccCCchheeccCcCCccCceeeeeE
Confidence                          23579999999976544331               2456778999999999999999999999999


Q ss_pred             HHHHhhCCCCCC-CChhhhHHHHHhccCcCC----------------c------------ccccccccc----CCCCHHH
Q 044236          652 LLESLVGPIVTG-KGEAFLLNEMASFGSQDG----------------R------------RRIVDPVVL----TTCSQES  698 (747)
Q Consensus       652 l~Elltg~~p~~-~~~~~~~~~~~~~~~~~~----------------~------------~~~~d~~~~----~~~~~~~  698 (747)
                      |+|+.||..-|. .++.+.+..|.+...+..                .            ..+.++.-+    ......+
T Consensus       299 L~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e  378 (415)
T KOG0671|consen  299 LVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLE  378 (415)
T ss_pred             EEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHH
Confidence            999999965444 344444433333221100                0            001111000    0112345


Q ss_pred             HHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          699 LSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       699 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..++.+|+.+++..||.+|+|+.|++.+
T Consensus       379 ~~~LfDLl~~mL~fDP~~RiTl~EAL~H  406 (415)
T KOG0671|consen  379 HVQLFDLLRRMLEFDPARRITLREALSH  406 (415)
T ss_pred             HhHHHHHHHHHHccCccccccHHHHhcC
Confidence            5679999999999999999999999864

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.97  E-value=2.6e-31  Score=270.14  Aligned_cols=220  Identities=18%  Similarity=0.121  Sum_probs=169.2

Q ss_pred             CCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCC
Q 044236          451 GSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG  529 (747)
Q Consensus       451 G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~g  529 (747)
                      |.||.||+++ ..+++.+|+|++....     .+.+|...+....||||+++++++...        ...++||||+++|
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~lv~e~~~~~   70 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSE--------DSVFLVLQHAEGG   70 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecC--------CeEEEEEecCCCC
Confidence            8999999998 4678999999987432     233455555566799999999988763        4789999999999


Q ss_pred             CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhccc
Q 044236          530 SYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK  609 (747)
Q Consensus       530 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~  609 (747)
                      +|.+++...   ..+++.....++.|++.||.|||+   .+|+||||||+||+++.++.++++|||.+.........   
T Consensus        71 ~L~~~l~~~---~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~---  141 (237)
T cd05576          71 KLWSHISKF---LNIPEECVKRWAAEMVVALDALHR---EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDG---  141 (237)
T ss_pred             CHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCCCEEEecccchhcccccccc---
Confidence            999988653   358999999999999999999999   89999999999999999999999999987554321100   


Q ss_pred             CCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCcccccccc
Q 044236          610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPV  689 (747)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  689 (747)
                                  ..+...|++||......++.++||||+||++|||++|+.|+....... .        .    .... 
T Consensus       142 ------------~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~-~--------~----~~~~-  195 (237)
T cd05576         142 ------------EAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI-N--------T----HTTL-  195 (237)
T ss_pred             ------------CCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc-c--------c----cccc-
Confidence                        112345788888877788999999999999999999987764321110 0        0    0000 


Q ss_pred             ccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH
Q 044236          690 VLTTCSQESLSIVVSITNKCICPEPSSRPSFE  721 (747)
Q Consensus       690 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  721 (747)
                         ..+......+.+++.+|++.||++||++.
T Consensus       196 ---~~~~~~~~~~~~li~~~l~~dp~~R~~~~  224 (237)
T cd05576         196 ---NIPEWVSEEARSLLQQLLQFNPTERLGAG  224 (237)
T ss_pred             ---CCcccCCHHHHHHHHHHccCCHHHhcCCC
Confidence               11122234478899999999999999973

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-31  Score=285.10  Aligned_cols=240  Identities=18%  Similarity=0.190  Sum_probs=189.3

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++.|.....+|.|+|+.|-++. ..+++..|||++....    .+..+|+.++... +||||+++.+.|.+        .
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~--------~  388 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYED--------G  388 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecC--------C
Confidence            5667777889999999999998 5678899999997542    2334577666655 69999999999876        3


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee-cCCCcEEEeccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL-DEHRIAKLSDYG  595 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl-d~~~~~kl~DFG  595 (747)
                      .+.++|||++.+|-+.+.+...   .... ..+..|+.+|+.|+.|||+   .+||||||||+|||+ +..++++|+|||
T Consensus       389 ~~~~~v~e~l~g~ell~ri~~~---~~~~-~e~~~w~~~lv~Av~~LH~---~gvvhRDLkp~NIL~~~~~g~lrltyFG  461 (612)
T KOG0603|consen  389 KEIYLVMELLDGGELLRRIRSK---PEFC-SEASQWAAELVSAVDYLHE---QGVVHRDLKPGNILLDGSAGHLRLTYFG  461 (612)
T ss_pred             ceeeeeehhccccHHHHHHHhc---chhH-HHHHHHHHHHHHHHHHHHh---cCeeecCCChhheeecCCCCcEEEEEec
Confidence            4899999999999888777643   1122 6677899999999999999   899999999999999 589999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      .++..+..               ....|.+..|.|||++....|++++|||||||+||||++|+.|+...+.. . ++..
T Consensus       462 ~a~~~~~~---------------~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~-ei~~  524 (612)
T KOG0603|consen  462 FWSELERS---------------CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-I-EIHT  524 (612)
T ss_pred             hhhhCchh---------------hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-H-HHHH
Confidence            99766543               11235677899999999999999999999999999999999998755433 1 1111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....            ..++...+....+|+.+|++.||.+||+|.++...
T Consensus       525 ~i~~------------~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  525 RIQM------------PKFSECVSDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             hhcC------------CccccccCHHHHHHHHHhccCChhhCcChhhhccC
Confidence            1111            11223444558899999999999999999999754

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1e-31  Score=299.43  Aligned_cols=257  Identities=21%  Similarity=0.254  Sum_probs=196.6

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeec---cchhcHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF---LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIES  508 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~---~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~  508 (747)
                      .+++-..++|.++++||+|+||.|..++. .+++++|.|++..   .+..+...|+.|-.+|..-..+-||.+..+|.+ 
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD-  146 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD-  146 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC-
Confidence            45566678999999999999999999995 5689999999975   456677889999999999999999999887766 


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                             .+++|+|||||+||||-.++.+..   .++...+..|+..|+-||.-+|+   .|+|||||||+|||||..|+
T Consensus       147 -------~~~LYlVMdY~pGGDlltLlSk~~---~~pE~~ArFY~aEiVlAldslH~---mgyVHRDiKPDNvLld~~GH  213 (1317)
T KOG0612|consen  147 -------ERYLYLVMDYMPGGDLLTLLSKFD---RLPEDWARFYTAEIVLALDSLHS---MGYVHRDIKPDNVLLDKSGH  213 (1317)
T ss_pred             -------ccceEEEEecccCchHHHHHhhcC---CChHHHHHHHHHHHHHHHHHHHh---ccceeccCCcceeEecccCc
Confidence                   458999999999999999998752   68888899999999999999999   89999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee----c-cCCCcCCceeehhHHHHHHhhCCCCCC
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD----I-QRTKLEDDVYNFGFILLESLVGPIVTG  663 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~-~~~s~k~DVwSfGvvl~Elltg~~p~~  663 (747)
                      +||+|||-+-.+.........           ...||+.|.+||++.    + +.|+..+|+||+||++|||+.|..||.
T Consensus       214 ikLADFGsClkm~~dG~V~s~-----------~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFY  282 (1317)
T KOG0612|consen  214 IKLADFGSCLKMDADGTVRSS-----------VAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFY  282 (1317)
T ss_pred             EeeccchhHHhcCCCCcEEec-----------cccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcch
Confidence            999999988666533322211           135678888898884    2 678999999999999999999988876


Q ss_pred             CCh-hhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC---HHHHHH
Q 044236          664 KGE-AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS---FEDVLW  725 (747)
Q Consensus       664 ~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~evl~  725 (747)
                      ... ......+...   ...-.+++.   .+.+++    ..+|+.+.+. +|+.|-.   ++++-.
T Consensus       283 adslveTY~KIm~h---k~~l~FP~~---~~VSee----akdLI~~ll~-~~e~RLgrngiedik~  337 (1317)
T KOG0612|consen  283 ADSLVETYGKIMNH---KESLSFPDE---TDVSEE----AKDLIEALLC-DREVRLGRNGIEDIKN  337 (1317)
T ss_pred             HHHHHHHHHHHhch---hhhcCCCcc---cccCHH----HHHHHHHHhc-ChhhhcccccHHHHHh
Confidence            322 2222222221   111111111   113344    5555554332 6777766   777754

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=274.39  Aligned_cols=244  Identities=21%  Similarity=0.283  Sum_probs=190.9

Q ss_pred             cccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          445 LSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      .++||+|.||+||-|+ .++|+.||||++.+..  ......+++|+.||++++||.||.+...|...        +.+++
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~--------ervFV  640 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETP--------ERVFV  640 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCC--------ceEEE
Confidence            4789999999999998 5789999999997542  23346789999999999999999999888763        48999


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC---CcEEEecccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH---RIAKLSDYGISI  598 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~DFGla~  598 (747)
                      |||-+ +||..+.|-.. ..+.|+......++.||+.||.|||.   ++|+|+||||+|||+...   -.+||||||.||
T Consensus       641 VMEKl-~GDMLEMILSs-EkgRL~er~TkFlvtQIL~ALr~LH~---knIvHCDLKPENVLLas~~~FPQvKlCDFGfAR  715 (888)
T KOG4236|consen  641 VMEKL-HGDMLEMILSS-EKGRLPERITKFLVTQILVALRYLHF---KNIVHCDLKPENVLLASASPFPQVKLCDFGFAR  715 (888)
T ss_pred             Eehhh-cchHHHHHHHh-hcccchHHHHHHHHHHHHHHHHHhhh---cceeeccCCchheeeccCCCCCceeecccccee
Confidence            99999 55776665432 24568988889999999999999999   899999999999999643   379999999999


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ++.+..-...             ..|+++|.|||++....|...-|+||.|||+|--++|..||..++ ++-+++...  
T Consensus       716 iIgEksFRrs-------------VVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdE-dIndQIQNA--  779 (888)
T KOG4236|consen  716 IIGEKSFRRS-------------VVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDE-DINDQIQNA--  779 (888)
T ss_pred             ecchhhhhhh-------------hcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCcc-chhHHhhcc--
Confidence            8865433221             457889999999999999999999999999999999999997543 222222110  


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                          .-+..|.-+.    +......+++...++..=.+|.|..+.+.
T Consensus       780 ----aFMyPp~PW~----eis~~AidlIn~LLqVkm~kRysvdk~ls  818 (888)
T KOG4236|consen  780 ----AFMYPPNPWS----EISPEAIDLINNLLQVKMRKRYSVDKSLS  818 (888)
T ss_pred             ----ccccCCCchh----hcCHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence                1112222223    33444778888888888899999887653

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.97  E-value=3.8e-31  Score=242.49  Aligned_cols=203  Identities=18%  Similarity=0.289  Sum_probs=161.8

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeec-cchhcHHHHHHHHHHH-hcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTF-LKKYSIQNLKVRLDFL-SKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~-~~~~~~~~~~~E~~~l-~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++......||+|+||.|-+-+ ..+|+..|||++.. ...+..+...+|+.+. +....|.+|++||.....+      
T Consensus        45 ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~reg------  118 (282)
T KOG0984|consen   45 ADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREG------  118 (282)
T ss_pred             hhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccc------
Confidence            3444556779999999999888 46799999999974 2345566777888865 4557999999999887744      


Q ss_pred             CceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ..++.||.|.- ||+.+.++- ..+..+++...-+|+..|.+||.|||+.  ..+||||+||+||||+.+|++|+|||
T Consensus       119 --dvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDF  193 (282)
T KOG0984|consen  119 --DVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKICDF  193 (282)
T ss_pred             --cEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEEccc
Confidence              78999999965 887765431 1245688888889999999999999996  67999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeec----cCCCcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI----QRTKLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      |++-.+.++...+..             .|..+|+|||.+..    ..|+.|+||||+|+.+.||++++.|++..
T Consensus       194 GIsG~L~dSiAkt~d-------------aGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  194 GISGYLVDSIAKTMD-------------AGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESW  255 (282)
T ss_pred             ccceeehhhhHHHHh-------------cCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccccc
Confidence            999776654332211             23457888887653    36899999999999999999999998743

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.97  E-value=1.8e-30  Score=293.01  Aligned_cols=269  Identities=14%  Similarity=0.087  Sum_probs=164.7

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CC----CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-EN----GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~----g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ..++|+..+.||+|+||.||+|+. .+    +..||||++......  +.+..|  .+....+.+++.++..+.....  
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~--e~~~~e--~l~~~~~~~~~~~~~~~~~~~~--  203 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAV--EIWMNE--RVRRACPNSCADFVYGFLEPVS--  203 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchh--HHHHHH--HHHhhchhhHHHHHHhhhcccc--
Confidence            467899999999999999999995 45    789999987632211  111111  1222333444444333222110  


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCC-----------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPE-----------------NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~-----------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                      .......++||||+++|+|.++++.....                 .......+..++.|++.||+|||+   .+|+|||
T Consensus       204 ~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~---~gIiHRD  280 (566)
T PLN03225        204 SKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS---TGIVHRD  280 (566)
T ss_pred             cccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH---CCEEeCc
Confidence            11245789999999999999988643110                 001123355789999999999999   8999999


Q ss_pred             CCCCceeecC-CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec------------------
Q 044236          576 LTTNNILLDE-HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI------------------  636 (747)
Q Consensus       576 lk~~NILld~-~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------------------  636 (747)
                      |||+|||++. ++.+||+|||+|+.+........           ....+++.|++||.+..                  
T Consensus       281 LKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~-----------~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp  349 (566)
T PLN03225        281 VKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIP-----------KEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSP  349 (566)
T ss_pred             CCHHHEEEeCCCCcEEEEeCCCccccccccccCC-----------cccccCCCccChHHhhccCCCCCCccccccccccc
Confidence            9999999985 68999999999975532211100           01233445666664321                  


Q ss_pred             ----cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcC-CccccccccccCC------CCHHHHHHHHHH
Q 044236          637 ----QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD-GRRRIVDPVVLTT------CSQESLSIVVSI  705 (747)
Q Consensus       637 ----~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~------~~~~~~~~~~~l  705 (747)
                          ..++.++|||||||++|||+++..+.+.........+....... ......++....+      ..........+|
T Consensus       350 ~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dL  429 (566)
T PLN03225        350 VLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWEL  429 (566)
T ss_pred             hhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHH
Confidence                23456789999999999999987765432111111111100000 0000011110000      000011234589


Q ss_pred             HhHccCCCCCCCCCHHHHHHH
Q 044236          706 TNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       706 ~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +.+|++.||++|||+.|++++
T Consensus       430 i~~mL~~dP~kR~ta~e~L~H  450 (566)
T PLN03225        430 LKSMMRFKGRQRISAKAALAH  450 (566)
T ss_pred             HHHHccCCcccCCCHHHHhCC
Confidence            999999999999999999874

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.3e-30  Score=240.64  Aligned_cols=258  Identities=16%  Similarity=0.261  Sum_probs=189.6

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.+|+|.|++||.|. ..+.+.++||+++..+   .+.+.+|+.+|..|+ |||||++++...++.      .
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk---kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~------S  107 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK---KKKIKREIKILQNLRGGPNIIKLLDIVKDPE------S  107 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH---HHHHHHHHHHHHhccCCCCeeehhhhhcCcc------c
Confidence            4678889999999999999998 6778899999998544   356789999999997 999999999988755      3


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-CcEEEeccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIAKLSDYG  595 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFG  595 (747)
                      ....||+||+.+-+...+..      .|+...+..++.++++||.|+|+   .||+|||+||.|++||.. -.+++.|+|
T Consensus       108 ktpaLiFE~v~n~Dfk~ly~------tl~d~dIryY~~elLkALdyCHS---~GImHRDVKPhNvmIdh~~rkLrlIDWG  178 (338)
T KOG0668|consen  108 KTPSLIFEYVNNTDFKQLYP------TLTDYDIRYYIYELLKALDYCHS---MGIMHRDVKPHNVMIDHELRKLRLIDWG  178 (338)
T ss_pred             cCchhHhhhhccccHHHHhh------hhchhhHHHHHHHHHHHHhHHHh---cCcccccCCcceeeechhhceeeeeecc
Confidence            46789999999988877653      37778889999999999999999   999999999999999964 579999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeee-eccCCCcCCceeehhHHHHHHhhCCCCCC--CChhhhHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVV-DIQRTKLEDDVYNFGFILLESLVGPIVTG--KGEAFLLNE  672 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~s~k~DVwSfGvvl~Elltg~~p~~--~~~~~~~~~  672 (747)
                      +|.............             ....+--||++ +...|+..-|+|||||++.+|+..+.||-  .+..+++-.
T Consensus       179 LAEFYHp~~eYnVRV-------------ASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVk  245 (338)
T KOG0668|consen  179 LAEFYHPGKEYNVRV-------------ASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVK  245 (338)
T ss_pred             hHhhcCCCceeeeee-------------ehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHH
Confidence            997665433322111             11122334444 46678889999999999999999977664  334444444


Q ss_pred             HHhccCcCCc-------cccccccccC----------------CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          673 MASFGSQDGR-------RRIVDPVVLT----------------TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       673 ~~~~~~~~~~-------~~~~d~~~~~----------------~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ++.....+..       ..-+||....                +-..-...++.+++.+.+..|..+|||+.|++..-
T Consensus       246 IakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~Hp  323 (338)
T KOG0668|consen  246 IAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHP  323 (338)
T ss_pred             HHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcCc
Confidence            4332221100       0012221100                00001234588999999999999999999998653

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.96  E-value=3.7e-29  Score=254.49  Aligned_cols=237  Identities=24%  Similarity=0.284  Sum_probs=184.1

Q ss_pred             CCeeEEEEEeC-CCcEEEEEEeeccchhc-HHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCC
Q 044236          452 SRGKLYKGRLE-NGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG  529 (747)
Q Consensus       452 ~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~g  529 (747)
                      +||.||+|+.. +|+.+|+|++....... .+.+.+|++.+++++|+||+++++++...        ...+++|||++++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--------~~~~l~~e~~~~~   72 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDE--------DKLYLVMEYCDGG   72 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeC--------CEEEEEEeCCCCC
Confidence            58999999965 58999999997654433 67899999999999999999999998763        3789999999999


Q ss_pred             CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhccc
Q 044236          530 SYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK  609 (747)
Q Consensus       530 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~  609 (747)
                      +|.+++...   ..+++..+..++.++++++.|||+   .+++|+||+|+||+++.++.++++|||.+..........  
T Consensus        73 ~L~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~--  144 (244)
T smart00220       73 DLFDLLKKR---GRLSEDEARFYARQILSALEYLHS---NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLT--  144 (244)
T ss_pred             CHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHH---cCeecCCcCHHHeEECCCCcEEEccccceeeeccccccc--
Confidence            999998753   238899999999999999999999   789999999999999999999999999987654322110  


Q ss_pred             CCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCC-ChhhhHHHHHhccCcCCccccccc
Q 044236          610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK-GEAFLLNEMASFGSQDGRRRIVDP  688 (747)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~-~~~~~~~~~~~~~~~~~~~~~~d~  688 (747)
                                 ...+...|.+||......++.++||||||+++||+++|..|+.. .+..............       .
T Consensus       145 -----------~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~-------~  206 (244)
T smart00220      145 -----------TFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPP-------F  206 (244)
T ss_pred             -----------cccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCC-------C
Confidence                       01223456778877777889999999999999999999988865 3322222221111000       0


Q ss_pred             cccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          689 VVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       689 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .   .........+.+++.+||..+|++||++.++++
T Consensus       207 ~---~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      207 P---PPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             c---cccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence            0   000002345888999999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=6.4e-30  Score=268.10  Aligned_cols=209  Identities=19%  Similarity=0.273  Sum_probs=169.3

Q ss_pred             CCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      |..++.||-|+||+|.+++ .++...+|.|.++..+   ......++.|-.||..-+.+-||+||..|.+.        +
T Consensus       631 Fvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDk--------d  702 (1034)
T KOG0608|consen  631 FVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDK--------D  702 (1034)
T ss_pred             eEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccC--------C
Confidence            6778899999999999997 6668889999987543   44556788999999999999999999877663        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      .+|+||||++|||+..+|-+   .+.+.+..+..++.++..|+++.|.   .++|||||||+|||||.+|++||+||||+
T Consensus       703 nLYFVMdYIPGGDmMSLLIr---mgIFeE~LARFYIAEltcAiesVHk---mGFIHRDiKPDNILIDrdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  703 NLYFVMDYIPGGDMMSLLIR---MGIFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLC  776 (1034)
T ss_pred             ceEEEEeccCCccHHHHHHH---hccCHHHHHHHHHHHHHHHHHHHHh---ccceecccCccceEEccCCceeeeecccc
Confidence            89999999999999998865   3457778888899999999999999   99999999999999999999999999998


Q ss_pred             ccc---cccchhc------ccCCCCCcc---------------------cccceeeecCCcceeeeeeccCCCcCCceee
Q 044236          598 IIM---EEHEKLE------AKGEGPKAR---------------------YGFLFICRTSAENVVIVVDIQRTKLEDDVYN  647 (747)
Q Consensus       598 ~~~---~~~~~~~------~~~~~~~~~---------------------~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwS  647 (747)
                      .-.   .+...+.      .....+...                     .-.....|+..|.|||++....|+..+|+||
T Consensus       777 TGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws  856 (1034)
T KOG0608|consen  777 TGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWS  856 (1034)
T ss_pred             ccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhH
Confidence            422   1111000      000000000                     1122457889999999999999999999999


Q ss_pred             hhHHHHHHhhCCCCCCC
Q 044236          648 FGFILLESLVGPIVTGK  664 (747)
Q Consensus       648 fGvvl~Elltg~~p~~~  664 (747)
                      .|||||||+.|+.||-.
T Consensus       857 ~gvil~em~~g~~pf~~  873 (1034)
T KOG0608|consen  857 VGVILYEMLVGQPPFLA  873 (1034)
T ss_pred             hhHHHHHHhhCCCCccC
Confidence            99999999999999864

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=8.2e-31  Score=268.84  Aligned_cols=250  Identities=16%  Similarity=0.214  Sum_probs=199.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCC-cEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENG-TYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g-~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..+++.+..||-|+||.|-+++.... ..+|+|.++..   +....+.+..|-.+|...+.|.||++|-.|.+.      
T Consensus       419 l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~------  492 (732)
T KOG0614|consen  419 LSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDS------  492 (732)
T ss_pred             hhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccc------
Confidence            34566677899999999999986543 34788888643   344556788999999999999999999988773      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ..+|+.||-|-||.+...+++   ++.++..+...++..+.+|++|||+   .+||.|||||+|+++|.+|-+||-||
T Consensus       493 --kyvYmLmEaClGGElWTiLrd---Rg~Fdd~tarF~~acv~EAfeYLH~---k~iIYRDLKPENllLd~~Gy~KLVDF  564 (732)
T KOG0614|consen  493 --KYVYMLMEACLGGELWTILRD---RGSFDDYTARFYVACVLEAFEYLHR---KGIIYRDLKPENLLLDNRGYLKLVDF  564 (732)
T ss_pred             --hhhhhhHHhhcCchhhhhhhh---cCCcccchhhhhHHHHHHHHHHHHh---cCceeccCChhheeeccCCceEEeeh
Confidence              489999999999999999987   4568888999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+|+.+.....+             ..+||++.|.|||++....-+.++|.||+|+++|||+||.+||...+.......+
T Consensus       565 GFAKki~~g~KT-------------wTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~I  631 (732)
T KOG0614|consen  565 GFAKKIGSGRKT-------------WTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLI  631 (732)
T ss_pred             hhHHHhccCCce-------------eeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHH
Confidence            999887654432             1378999999999999999999999999999999999999999876654322222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  726 (747)
                      -.+..     +      -.+|........+++++....+|.+|--     +.||-++
T Consensus       632 LkGid-----~------i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH  677 (732)
T KOG0614|consen  632 LKGID-----K------IEFPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKH  677 (732)
T ss_pred             Hhhhh-----h------hhcccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhh
Confidence            11110     1      1123333444778888888899999964     5555543

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-29  Score=273.88  Aligned_cols=247  Identities=21%  Similarity=0.287  Sum_probs=180.7

Q ss_pred             CCccccccCCCCee-EEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceE
Q 044236          442 FDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       442 f~~~~~iG~G~~g~-Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      |...+++|.|+.|. ||+|.++ |+.||||++-.   ....-..+|+..|+.- +|||||++|+.-.+        ....
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~---e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d--------~qF~  578 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLE---EFFDFAQREIQLLQESDEHPNVIRYYCSEQD--------RQFL  578 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC-CceehHHHHhh---HhHHHHHHHHHHHHhccCCCceEEEEeeccC--------CceE
Confidence            44456789999885 7999985 78999998852   2233457899999887 59999999864333        4589


Q ss_pred             EEEEeccCCCCcccccccCCCCCC-CCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---C--CcEEEec
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---H--RIAKLSD  593 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~-l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~--~~~kl~D  593 (747)
                      ||+.|.|.- +|.+++........ ..-.....+..|++.||++||+   .+||||||||.||||+.   +  ..++|+|
T Consensus       579 YIalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs---l~iVHRDLkPQNILI~~~~~~~~~ra~iSD  654 (903)
T KOG1027|consen  579 YIALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS---LKIVHRDLKPQNILISVPSADGTLRAKISD  654 (903)
T ss_pred             EEEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh---cccccccCCCceEEEEccCCCcceeEEecc
Confidence            999999966 99999976311111 1113346788999999999999   78999999999999975   3  5799999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~  672 (747)
                      ||+++.+...........+         ..|+..|.|||.+...+-+.++||+|+|||+|..++| .+||++.-..+.+-
T Consensus       655 fglsKkl~~~~sS~~r~s~---------~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NI  725 (903)
T KOG1027|consen  655 FGLSKKLAGGKSSFSRLSG---------GSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANI  725 (903)
T ss_pred             cccccccCCCcchhhcccC---------CCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhh
Confidence            9999988765443322111         2456678899999988888999999999999999998 99998643322211


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ..    .......+.+      ..++  +..+|+.++++.+|..||++.+|+.
T Consensus       726 l~----~~~~L~~L~~------~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  726 LT----GNYTLVHLEP------LPDC--EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             hc----Cccceeeecc------CchH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence            10    0000000111      1111  5789999999999999999999973

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.8e-30  Score=243.14  Aligned_cols=264  Identities=17%  Similarity=0.251  Sum_probs=187.5

Q ss_pred             CccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          443 DSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      +..+.||-|+||.||.+. -++|+.||.|++...  .-...+.+.+|+.+|.-++|.|++..++.-.-..   ..--.++
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph---~dfFqEi  132 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPAN---PSFFQEL  132 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCC---chHHHHH
Confidence            345779999999999998 467999999998642  3345578899999999999999999887643211   0112367


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      |+|+|.|.. ||.+.|..   ...++-..++-...||.+||.|||+   .+|.||||||.|.|++.+...||||||++|.
T Consensus       133 YV~TELmQS-DLHKIIVS---PQ~Ls~DHvKVFlYQILRGLKYLHs---A~ILHRDIKPGNLLVNSNCvLKICDFGLARv  205 (449)
T KOG0664|consen  133 YVLTELMQS-DLHKIIVS---PQALTPDHVKVFVYQILRGLKYLHT---ANILHRDIKPGNLLVNSNCILKICDFGLART  205 (449)
T ss_pred             HHHHHHHHh-hhhheecc---CCCCCcchhhhhHHHHHhhhHHHhh---cchhhccCCCccEEeccCceEEecccccccc
Confidence            899999966 99998865   3567777778888999999999999   8899999999999999999999999999988


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCC-ChhhhHHHHHhcc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGK-GEAFLLNEMASFG  677 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~-~~~~~~~~~~~~~  677 (747)
                      .+..+.....-.           .-+.+|.|||++.+. .|+...||||.|||+.|++-++.-|.. +...+++.+....
T Consensus       206 ee~d~~~hMTqE-----------VVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLL  274 (449)
T KOG0664|consen  206 WDQRDRLNMTHE-----------VVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLL  274 (449)
T ss_pred             cchhhhhhhHHH-----------HHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHh
Confidence            765443221100           123467888888654 599999999999999999988776653 3333333322221


Q ss_pred             CcCCc---------------ccccc-ccccC----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          678 SQDGR---------------RRIVD-PVVLT----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       678 ~~~~~---------------~~~~d-~~~~~----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ..+..               +.-.. |....    ..+.....+.+.+....+..||++|.+..+.+..+
T Consensus       275 GTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~  344 (449)
T KOG0664|consen  275 GTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHR  344 (449)
T ss_pred             CCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccc
Confidence            11110               00001 11100    01112223356677788999999999998887644

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7e-29  Score=242.37  Aligned_cols=199  Identities=21%  Similarity=0.304  Sum_probs=166.5

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|..+++||+|+|++|..++ .++.+.+|+|+++..   +..+..-++.|-.+..+- +||.+|.+..+|...     
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqte-----  323 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTE-----  323 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhccc-----
Confidence            4679999999999999999999 467899999998742   233444456676666655 699999999877653     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ..++.|.||+++|+|.-++++   ...|++..+..+...|+.||.|||+   .+||.||||..|||+|.+|++|++|
T Consensus       324 ---srlffvieyv~ggdlmfhmqr---qrklpeeharfys~ei~lal~flh~---rgiiyrdlkldnvlldaeghikltd  394 (593)
T KOG0695|consen  324 ---SRLFFVIEYVNGGDLMFHMQR---QRKLPEEHARFYSAEICLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTD  394 (593)
T ss_pred             ---ceEEEEEEEecCcceeeehhh---hhcCcHHHhhhhhHHHHHHHHHHhh---cCeeeeeccccceEEccCCceeecc
Confidence               479999999999999888775   4568998899999999999999999   9999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCC
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTG  663 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~  663 (747)
                      +|+++.--....       +     ...+|+++.|.|||++.+..|...+|+|++||+++||+.|+.||+
T Consensus       395 ygmcke~l~~gd-------~-----tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfd  452 (593)
T KOG0695|consen  395 YGMCKEGLGPGD-------T-----TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFD  452 (593)
T ss_pred             cchhhcCCCCCc-------c-----cccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcc
Confidence            999864211110       0     112689999999999999999999999999999999999999997

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-28  Score=239.59  Aligned_cols=262  Identities=18%  Similarity=0.216  Sum_probs=189.9

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeec--cchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTF--LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~--~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .+|..+..+|.|.- .|-.+. .-.++.||+|++..  ......+...+|...+..+.|+|||+++.++.-...  ....
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~--l~~~   93 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKT--LEEF   93 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCcccc--HHHH
Confidence            45666788888887 555554 33488999998753  234455677899999999999999999999875321  1223


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...|+|||||.. +|...++.     .++..+...|..|++.|+.|||+   .+|+||||||+||++..+..+||.|||+
T Consensus        94 ~e~y~v~e~m~~-nl~~vi~~-----elDH~tis~i~yq~~~~ik~lhs---~~IihRdLkPsnivv~~~~~lKi~dfg~  164 (369)
T KOG0665|consen   94 QEVYLVMELMDA-NLCQVILM-----ELDHETISYILYQMLCGIKHLHS---AGIIHRDLKPSNIVVNSDCTLKILDFGL  164 (369)
T ss_pred             HhHHHHHHhhhh-HHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHh---cceeecccCcccceecchhheeeccchh
Confidence            578999999965 89888863     37788889999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCC-ChhhhHHHHHh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK-GEAFLLNEMAS  675 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~-~~~~~~~~~~~  675 (747)
                      |+.....             +....+.-+..|.|||++.+..|.+.+||||.||++.||++|..-|.+ ...++..++..
T Consensus       165 ar~e~~~-------------~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~  231 (369)
T KOG0665|consen  165 ARTEDTD-------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIE  231 (369)
T ss_pred             hcccCcc-------------cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHH
Confidence            9653322             011113446678999999998899999999999999999999765542 22222222222


Q ss_pred             ccCcCC--------------------------ccccccccccC--CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQDG--------------------------RRRIVDPVVLT--TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~~--------------------------~~~~~d~~~~~--~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......                          -+.+.|...+.  +.+......+.+++.+++..+|++|.++++++++
T Consensus       232 ~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  232 QLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             HhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence            111100                          01111111111  1122345568899999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=2.8e-27  Score=288.96  Aligned_cols=226  Identities=30%  Similarity=0.447  Sum_probs=147.1

Q ss_pred             CcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCccccc
Q 044236           84 DSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWD  163 (747)
Q Consensus        84 ~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~  163 (747)
                      +.+|..++.+.+|+.|+|++|.+.+.+|+.+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|..|.
T Consensus       346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~  425 (968)
T PLN00113        346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT  425 (968)
T ss_pred             CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence            33444444444444444444444444444444444444444444444444555555555555555555555555555555


Q ss_pred             CCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC---CCCcceee
Q 044236          164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM---PKGLVTVL  240 (747)
Q Consensus       164 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~  240 (747)
                      .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|......+|+.|++++|++++.+|..   .++|+.|+
T Consensus       426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  505 (968)
T PLN00113        426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK  505 (968)
T ss_pred             cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEE
Confidence            555555556665655555555555566666666666666666665545566777777777777766643   35678888


Q ss_pred             cCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCC
Q 044236          241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       241 ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      |++|.+++.+|..|..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|+++|.+|..+..++.|+
T Consensus       506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  574 (968)
T PLN00113        506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV  574 (968)
T ss_pred             CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence            888888888888888888888888888888888888888888899999999999888888776665554

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.95  E-value=2.7e-28  Score=258.42  Aligned_cols=253  Identities=18%  Similarity=0.252  Sum_probs=194.8

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|..+..+|.|.||.|||++ ...++.+|||+++..-.....-.+.|+-+++.-+|||||.++|-|...        .
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~--------d   85 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRR--------D   85 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhh--------c
Confidence            3678889999999999999999 567999999999976666677788899999999999999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..+++||||.+|+|.+..+.   -++++..+...+++...+|++|||+   .+=+|||||-.|||+.+.|.+|++|||.+
T Consensus        86 klwicMEycgggslQdiy~~---TgplselqiayvcRetl~gl~ylhs---~gk~hRdiKGanilltd~gDvklaDfgvs  159 (829)
T KOG0576|consen   86 KLWICMEYCGGGSLQDIYHV---TGPLSELQIAYVCRETLQGLKYLHS---QGKIHRDIKGANILLTDEGDVKLADFGVS  159 (829)
T ss_pred             CcEEEEEecCCCcccceeee---cccchhHHHHHHHhhhhccchhhhc---CCcccccccccceeecccCceeecccCch
Confidence            78999999999999998775   4568888889999999999999999   66699999999999999999999999997


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      ..+......            ...+.|+++|||||+..   .+.|..++|||+.|+...|+.--.+|.-+-.......+.
T Consensus       160 aqitati~K------------rksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~Lm  227 (829)
T KOG0576|consen  160 AQITATIAK------------RKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLM  227 (829)
T ss_pred             hhhhhhhhh------------hhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHh
Confidence            433211100            01245678889998764   456899999999999999987665554322222211121


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....       ++|.-.. -.......+-++++.|+..+|++||+++..+.
T Consensus       228 TkS~-------~qpp~lk-Dk~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  228 TKSG-------FQPPTLK-DKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             hccC-------CCCCccc-CCccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence            1111       1111111 12234455889999999999999999987764

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.3e-27  Score=240.14  Aligned_cols=137  Identities=20%  Similarity=0.288  Sum_probs=115.7

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-----C---CCcceeeeeeeccC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-----H---PHLVSLLGHCIESG  509 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-----H---~nIv~l~g~~~~~~  509 (747)
                      ..+|.+.++||-|.|++||+|. ..+.+.||+|+.+..+. -.+....||++|++++     |   ..||+|+++|...+
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqh-YtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQH-YTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhH-HHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            3678899999999999999998 67789999999885433 2355677999999884     3   37999999998876


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD  584 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  584 (747)
                          .++.++|+|+|++ |-+|..+|... ..+.++...+++|+.||+.||.|||..  .+|||-||||+|||+.
T Consensus       156 ----pNG~HVCMVfEvL-GdnLLklI~~s-~YrGlpl~~VK~I~~qvL~GLdYLH~e--cgIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  156 ----PNGQHVCMVFEVL-GDNLLKLIKYS-NYRGLPLSCVKEICRQVLTGLDYLHRE--CGIIHTDLKPENVLLC  222 (590)
T ss_pred             ----CCCcEEEEEehhh-hhHHHHHHHHh-CCCCCcHHHHHHHHHHHHHHHHHHHHh--cCccccCCCcceeeee
Confidence                4567999999999 55898888764 345689999999999999999999997  4899999999999994

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.94  E-value=3.2e-26  Score=227.14  Aligned_cols=210  Identities=31%  Similarity=0.484  Sum_probs=172.7

Q ss_pred             ccCCCCeeEEEEEeC-CCcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEec
Q 044236          448 MGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEY  525 (747)
Q Consensus       448 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey  525 (747)
                      ||+|.+|.||+++.. +++.+++|++...... ..+.+.+|++.++.++|++|+++++++...        ...+++|||
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--------~~~~~~~e~   72 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDE--------NHLYLVMEY   72 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecC--------CeEEEEEec
Confidence            689999999999964 4899999998754332 346789999999999999999999998763        378999999


Q ss_pred             cCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCcEEEecccccccccccc
Q 044236          526 IPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRIAKLSDYGISIIMEEHE  604 (747)
Q Consensus       526 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~~~~  604 (747)
                      +++++|.+++...  ...+++..+..++.++++++.|||+   .+++|+||+|.||+++. ++.++|+|||.+.......
T Consensus        73 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh~---~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~  147 (215)
T cd00180          73 CEGGSLKDLLKEN--EGKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDK  147 (215)
T ss_pred             CCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCc
Confidence            9999999998753  1358899999999999999999999   79999999999999999 8999999999986554322


Q ss_pred             hhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCcc
Q 044236          605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR  683 (747)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~  683 (747)
                      ...            ........|.+||..... .++.+.|+|++|++++|+                            
T Consensus       148 ~~~------------~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l----------------------------  187 (215)
T cd00180         148 SLL------------KTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL----------------------------  187 (215)
T ss_pred             chh------------hcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH----------------------------
Confidence            100            001223455666766665 778899999999999997                            


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       684 ~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                                      ..+.+++..|++.+|++||++.++++.
T Consensus       188 ----------------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 ----------------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             ----------------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                            237888999999999999999999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.94  E-value=3.5e-27  Score=242.93  Aligned_cols=260  Identities=19%  Similarity=0.235  Sum_probs=193.8

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC------CCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ------HPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~------H~nIv~l~g~~~~~~~~~  512 (747)
                      ..|.+....|+|-|+.|.+|. ...|+.||||+|...... .+.=..|+++|++|.      --++++|+-.|..     
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M-~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~h-----  505 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVM-HKTGLKELEILKKLNDADPEDKFHCLRLFRHFKH-----  505 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHH-hhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhh-----
Confidence            568888889999999999998 455889999999854432 233467999999994      3478999888876     


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-CcEEE
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIAKL  591 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl  591 (747)
                         .+++|||+|-+.- +|.++|.+.+....|....+..++.|+.-||..|..   .+|+|.||||.|||+++. ..+||
T Consensus       506 ---knHLClVFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~---c~vlHaDIKPDNiLVNE~k~iLKL  578 (752)
T KOG0670|consen  506 ---KNHLCLVFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK---CGVLHADIKPDNILVNESKNILKL  578 (752)
T ss_pred             ---cceeEEEehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh---cCeeecccCccceEeccCcceeee
Confidence               4699999998854 899999887666678889999999999999999998   789999999999999865 57899


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-H
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-L  670 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~  670 (747)
                      ||||.|-...+.+.+           +|   .-...|.|||++.+..|+...|+||.||.||||+||+..|.+..... +
T Consensus       579 CDfGSA~~~~eneit-----------PY---LVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~ML  644 (752)
T KOG0670|consen  579 CDFGSASFASENEIT-----------PY---LVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQML  644 (752)
T ss_pred             ccCcccccccccccc-----------HH---HHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHH
Confidence            999998665543321           11   11346889999999999999999999999999999988776433222 2


Q ss_pred             HHHHhcc-Cc--------------------------CC--------cccccccc------cc-----CCCCHHHHHHHHH
Q 044236          671 NEMASFG-SQ--------------------------DG--------RRRIVDPV------VL-----TTCSQESLSIVVS  704 (747)
Q Consensus       671 ~~~~~~~-~~--------------------------~~--------~~~~~d~~------~~-----~~~~~~~~~~~~~  704 (747)
                      ..+.... ..                          +.        ....+.|.      +.     ++.......++.+
T Consensus       645 rl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rd  724 (752)
T KOG0670|consen  645 RLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRD  724 (752)
T ss_pred             HHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHH
Confidence            1111100 00                          00        00111110      00     1112345677899


Q ss_pred             HHhHccCCCCCCCCCHHHHHHH
Q 044236          705 ITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       705 l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      |+..|+..||++|.|..+++++
T Consensus       725 LLdkml~LdP~KRit~nqAL~H  746 (752)
T KOG0670|consen  725 LLDKMLILDPEKRITVNQALKH  746 (752)
T ss_pred             HHHHHhccChhhcCCHHHHhcC
Confidence            9999999999999999988753

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=9.4e-27  Score=222.02  Aligned_cols=251  Identities=16%  Similarity=0.254  Sum_probs=175.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .+.|.+.+.+|+|.||.+-+++. ...+.+++|.+... ....++|.+|...=-.| .|.|||.-|++..+.       .
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt-------~   94 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVREFHYSFFLSPHQHIIDTYEVAFQT-------S   94 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHHhccceeeccchhhhHHHHHHhhc-------C
Confidence            35688889999999999999995 45788999988632 34568899998765556 489999988776553       3


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee-c-CCCcEEEecc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL-D-EHRIAKLSDY  594 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl-d-~~~~~kl~DF  594 (747)
                      +.++.++||+|.|||..-+..    ..+.+....+++.|++.|+.|||+   ..+||||||.+|||| + +..++|+|||
T Consensus        95 d~YvF~qE~aP~gdL~snv~~----~GigE~~~K~v~~ql~SAi~fMHs---knlVHRdlK~eNiLif~~df~rvKlcDF  167 (378)
T KOG1345|consen   95 DAYVFVQEFAPRGDLRSNVEA----AGIGEANTKKVFAQLLSAIEFMHS---KNLVHRDLKAENILIFDADFYRVKLCDF  167 (378)
T ss_pred             ceEEEeeccCccchhhhhcCc----ccccHHHHHHHHHHHHHHHHHhhc---cchhhcccccceEEEecCCccEEEeeec
Confidence            578999999999999987754    347788889999999999999999   889999999999999 3 3458999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeee---cc--CCCcCCceeehhHHHHHHhhCCCCCCCChh--
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQ--RTKLEDDVYNFGFILLESLVGPIVTGKGEA--  667 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~--~~s~k~DVwSfGvvl~Elltg~~p~~~~~~--  667 (747)
                      |+++....--..               ...+..|.+||+..   .+  ...+.+|||.||+|+|.++||++||.....  
T Consensus       168 G~t~k~g~tV~~---------------~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d  232 (378)
T KOG1345|consen  168 GLTRKVGTTVKY---------------LEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMD  232 (378)
T ss_pred             ccccccCceehh---------------hhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccC
Confidence            998654321110               01112233333222   22  346788999999999999999999984322  


Q ss_pred             -hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          668 -FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       668 -~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                       ....++.....  ....  -|..-..+++.    ++++.++-+..+|++|-...++-++-
T Consensus       233 ~~Y~~~~~w~~r--k~~~--~P~~F~~fs~~----a~r~Fkk~lt~~~~drcki~~~kk~r  285 (378)
T KOG1345|consen  233 KPYWEWEQWLKR--KNPA--LPKKFNPFSEK----ALRLFKKSLTPRFKDRCKIWTAKKMR  285 (378)
T ss_pred             chHHHHHHHhcc--cCcc--CchhhcccCHH----HHHHHHHhcCCcccccchhHHHHHHH
Confidence             12222211111  1111  11111223333    66777888999999996555555443

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.93  E-value=5e-27  Score=244.84  Aligned_cols=197  Identities=17%  Similarity=0.247  Sum_probs=162.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--------hhcHHHHHHHHHHHhcCC---CCCcceeeeeee
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--------KYSIQNLKVRLDFLSKLQ---HPHLVSLLGHCI  506 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--------~~~~~~~~~E~~~l~~l~---H~nIv~l~g~~~  506 (747)
                      ..+|..++.+|+|+||.|+.|.. ++...|+||.+.+..        ....-.+..||+||..++   |+||++++++|.
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFE  639 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFE  639 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheee
Confidence            34688899999999999999985 456789999886422        111223456999999997   999999999998


Q ss_pred             ccCCCCCCCCceEEEEEecc-CCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC
Q 044236          507 ESGSQDDSNTNKVFLVYEYI-PNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE  585 (747)
Q Consensus       507 ~~~~~~~~~~~~~~lv~Ey~-~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  585 (747)
                      +.        +.+||+||-- ++-||+++|.-   ...+++.+...|+.||+.|+++||+   .+|||||||-+||.+|.
T Consensus       640 dd--------d~yyl~te~hg~gIDLFd~IE~---kp~m~E~eAk~IFkQV~agi~hlh~---~~ivhrdikdenvivd~  705 (772)
T KOG1152|consen  640 DD--------DYYYLETEVHGEGIDLFDFIEF---KPRMDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENVIVDS  705 (772)
T ss_pred             cC--------CeeEEEecCCCCCcchhhhhhc---cCccchHHHHHHHHHHHhccccccc---cCceecccccccEEEec
Confidence            74        4899999974 45589999975   3469999999999999999999999   89999999999999999


Q ss_pred             CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCC
Q 044236          586 HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTG  663 (747)
Q Consensus       586 ~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~  663 (747)
                      +|-+||.|||.|......              ++-.+.|+..|.|||++.+.+| ...-|||++||+||.++....||.
T Consensus       706 ~g~~klidfgsaa~~ksg--------------pfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  706 NGFVKLIDFGSAAYTKSG--------------PFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             CCeEEEeeccchhhhcCC--------------CcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            999999999988543211              1223678889999999998887 466899999999999988877763

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.93  E-value=2.8e-25  Score=223.37  Aligned_cols=199  Identities=26%  Similarity=0.354  Sum_probs=162.8

Q ss_pred             CCccccccCCCCeeEEEEEeCC-CcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          442 FDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~~-g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      |...+.||+|++|.||+|.... ++.+|+|.+...... ..+.+.+|++.+++++|+|++++++++...        ...
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~--------~~~   72 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDP--------EPL   72 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecC--------Cce
Confidence            4567889999999999999654 899999999754433 567889999999999999999999988763        478


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++++||+++++|.+++....  ..+++.....++.+++.++.|||.   .+++|+|++|+||+++.++.++|+|||.+..
T Consensus        73 ~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~  147 (225)
T smart00221       73 YLVMEYCEGGDLFDYLRKKG--GKLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPENILLGMDGLVKLADFGLARF  147 (225)
T ss_pred             EEEEeccCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeeCceeeE
Confidence            99999999999999987532  117899999999999999999999   7899999999999999999999999999876


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeee-eccCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVV-DIQRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      .........           ....+...+++||.. ....++.++|||+||++++||++|+.||..
T Consensus       148 ~~~~~~~~~-----------~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      148 IHRDLAALL-----------KTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             ecCcccccc-----------cceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            543320000           001233456677766 566778899999999999999999999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.93  E-value=5.4e-26  Score=230.80  Aligned_cols=272  Identities=21%  Similarity=0.292  Sum_probs=191.7

Q ss_pred             HHHHhhCCCccccccCCCCeeEEEEEe-C---CCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccC
Q 044236          435 LKEATNNFDSLSFMGEGSRGKLYKGRL-E---NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESG  509 (747)
Q Consensus       435 l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~---~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~  509 (747)
                      +....+.|..+++||+|.|+.||++.. .   ..+.||+|.+.....  ...+.+|+++|..+. |.||+++.+++..  
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~--p~ri~~El~~L~~~gG~~ni~~~~~~~rn--  106 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS--PSRILNELEMLYRLGGSDNIIKLNGCFRN--  106 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC--chHHHHHHHHHHHhccchhhhcchhhhcc--
Confidence            444566788999999999999999983 3   478999999875433  356889999999995 9999999998766  


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCc
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRI  588 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~  588 (747)
                            .++..+|+||++.-+..+++..      ++..+...+++.+..||.|+|+   .+||||||||+|+|.+. .+.
T Consensus       107 ------nd~v~ivlp~~~H~~f~~l~~~------l~~~~i~~Yl~~ll~Al~~~h~---~GIvHRDiKpsNFL~n~~t~r  171 (418)
T KOG1167|consen  107 ------NDQVAIVLPYFEHDRFRDLYRS------LSLAEIRWYLRNLLKALAHLHK---NGIVHRDIKPSNFLYNRRTQR  171 (418)
T ss_pred             ------CCeeEEEecccCccCHHHHHhc------CCHHHHHHHHHHHHHHhhhhhc---cCccccCCCccccccccccCC
Confidence                  3489999999999888888764      6788899999999999999999   89999999999999984 467


Q ss_pred             EEEecccccccccccch---hcc---------cC--------CCCCcccccc------------eeeecCCcceeeeee-
Q 044236          589 AKLSDYGISIIMEEHEK---LEA---------KG--------EGPKARYGFL------------FICRTSAENVVIVVD-  635 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~---~~~---------~~--------~~~~~~~~~~------------~~~~~~~~~~~e~~~-  635 (747)
                      -.|.|||+|...+....   ...         .+        .......++.            ..+|++.+.|||++. 
T Consensus       172 g~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k  251 (418)
T KOG1167|consen  172 GVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFR  251 (418)
T ss_pred             ceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhh
Confidence            78999999963221110   000         00        0000011111            135677788899875 


Q ss_pred             ccCCCcCCceeehhHHHHHHhhCCCCCCCChh--hhHHHHHh---------ccCcCCc---cc---------------cc
Q 044236          636 IQRTKLEDDVYNFGFILLESLVGPIVTGKGEA--FLLNEMAS---------FGSQDGR---RR---------------IV  686 (747)
Q Consensus       636 ~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~--~~~~~~~~---------~~~~~~~---~~---------------~~  686 (747)
                      ...-+.++||||.|||++-+++++.||-....  +.+.++..         .....+.   .+               -+
T Consensus       252 ~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~  331 (418)
T KOG1167|consen  252 CPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETL  331 (418)
T ss_pred             ccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhcc
Confidence            44568899999999999999999888764322  22222111         0000000   00               01


Q ss_pred             c-cc---------ccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          687 D-PV---------VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       687 d-~~---------~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      + ..         ......+.....+++++.+|+..||.+|.|++|.++
T Consensus       332 ~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALk  380 (418)
T KOG1167|consen  332 HIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALK  380 (418)
T ss_pred             ChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhc
Confidence            0 00         000111222346899999999999999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=1.6e-25  Score=265.91  Aligned_cols=214  Identities=18%  Similarity=0.202  Sum_probs=141.4

Q ss_pred             cCCC-CCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044236          492 KLQH-PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG  570 (747)
Q Consensus       492 ~l~H-~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  570 (747)
                      .++| +||++++++|..... +......++.+|||+ .++|.++|+..  ...+++.+++.++.||++||+|||+   .+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~-~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~---~g  100 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNL-DGLDDDSIVRALECE-DVSLRQWLDNP--DRSVDAFECFHVFRQIVEIVNAAHS---QG  100 (793)
T ss_pred             hhhHHHHHHHhhcccCCccc-cccccchhhhhhccC-CccHHHHHhcc--cccccHHHHHHHHHHHHHHHHHHHh---CC
Confidence            4556 689999998744321 111234678889988 55999999753  4569999999999999999999999   89


Q ss_pred             cccCCCCCCceeecCCC-------------------cEEEecccccccccccchh---cc-cCCCCCcccccceeeecCC
Q 044236          571 SFSNRLTTNNILLDEHR-------------------IAKLSDYGISIIMEEHEKL---EA-KGEGPKARYGFLFICRTSA  627 (747)
Q Consensus       571 ivHrDlk~~NILld~~~-------------------~~kl~DFGla~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~  627 (747)
                      |+||||||+||||+..+                   .+|++|||+++........   .. ...............++..
T Consensus       101 IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  180 (793)
T PLN00181        101 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSW  180 (793)
T ss_pred             eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcc
Confidence            99999999999996544                   4555566655432210000   00 0000000000111346778


Q ss_pred             cceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHh
Q 044236          628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITN  707 (747)
Q Consensus       628 ~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~  707 (747)
                      |+|||++....|+.++|||||||+||||++|..|+.... .....+...        ..++....     ......+++.
T Consensus       181 Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~-----~~~~~~~~~~  246 (793)
T PLN00181        181 YTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS-RTMSSLRHR--------VLPPQILL-----NWPKEASFCL  246 (793)
T ss_pred             eEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH-HHHHHHHHh--------hcChhhhh-----cCHHHHHHHH
Confidence            999999988899999999999999999999987764221 111111110        11111111     1223567788


Q ss_pred             HccCCCCCCCCCHHHHHHH
Q 044236          708 KCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       708 ~Cl~~dP~~RPs~~evl~~  726 (747)
                      +||+.+|.+||+|.||+++
T Consensus       247 ~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        247 WLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             HhCCCChhhCcChHHHhhc
Confidence            9999999999999999863

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-25  Score=213.76  Aligned_cols=246  Identities=18%  Similarity=0.302  Sum_probs=181.7

Q ss_pred             CccccccCCCCeeEEEEEeCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          443 DSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      ....+|.+...|+.|+|+|+.+ -+++|++...  .....++|..|.-.|+-+.||||+.++|.|..+        ..+.
T Consensus       193 nl~tkl~e~hsgelwrgrwqgn-divakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsp--------pnlv  263 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRWQGN-DIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSP--------PNLV  263 (448)
T ss_pred             hhhhhhccCCCcccccccccCc-chhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCC--------CCce
Confidence            3445688999999999999754 4556766533  233447899999999999999999999999763        4789


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccC-CCCCCceeecCCCcEEEe--ccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSN-RLTTNNILLDEHRIAKLS--DYGIS  597 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHr-Dlk~~NILld~~~~~kl~--DFGla  597 (747)
                      ++..||+.|+|+..+++. ....++..+..+.+.++|+|++|||+.  .+++-| -|.+..|++|++.++||+  |--++
T Consensus       264 ~isq~mp~gslynvlhe~-t~vvvd~sqav~faldiargmaflhsl--ep~ipr~~lns~hvmidedltarismad~kfs  340 (448)
T KOG0195|consen  264 IISQYMPFGSLYNVLHEQ-TSVVVDHSQAVRFALDIARGMAFLHSL--EPMIPRFYLNSKHVMIDEDLTARISMADTKFS  340 (448)
T ss_pred             EeeeeccchHHHHHHhcC-ccEEEecchHHHHHHHHHhhHHHHhhc--chhhhhhhcccceEEecchhhhheecccceee
Confidence            999999999999999874 234577888999999999999999986  355555 499999999999999875  22221


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC---CcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT---KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      .        ...           .-.+.+++++||.+....-   -..+|+|||.|++||+.|+..||.+-.......  
T Consensus       341 f--------qe~-----------gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgm--  399 (448)
T KOG0195|consen  341 F--------QEV-----------GRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGM--  399 (448)
T ss_pred             e--------ecc-----------ccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhh--
Confidence            0        000           0123457778887765543   357899999999999999999987543221110  


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                               .+.-..++..+|+..+..+.+++.-|+++||.+||.+..|+-.|+.+
T Consensus       400 ---------kialeglrv~ippgis~hm~klm~icmnedpgkrpkfdmivpilekm  446 (448)
T KOG0195|consen  400 ---------KIALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKM  446 (448)
T ss_pred             ---------hhhhccccccCCCCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHh
Confidence                     01111122233445555689999999999999999999999999865

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.89  E-value=3e-23  Score=200.51  Aligned_cols=167  Identities=18%  Similarity=0.146  Sum_probs=123.5

Q ss_pred             CCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcc
Q 044236          529 GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA  608 (747)
Q Consensus       529 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~  608 (747)
                      |+|.++++.+  ...++|.++..++.|+++||+|||+   .+      ||+|||++.++.+|+  ||+++.......   
T Consensus         1 GsL~~~l~~~--~~~l~~~~~~~i~~qi~~~L~~lH~---~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~~---   64 (176)
T smart00750        1 VSLADILEVR--GRPLNEEEIWAVCLQCLRALRELHR---QA------KSGNILLTWDGLLKL--DGSVAFKTPEQS---   64 (176)
T ss_pred             CcHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHh---cC------CcccEeEcCccceee--ccceEeeccccC---
Confidence            6888888753  3469999999999999999999998   33      999999999999999  999876532110   


Q ss_pred             cCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh--hhHHHHHhccCcCCccccc
Q 044236          609 KGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA--FLLNEMASFGSQDGRRRIV  686 (747)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~  686 (747)
                                    .++..|+|||++....++.++|||||||++|||+||+.|+.....  .....+.......      
T Consensus        65 --------------~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~------  124 (176)
T smart00750       65 --------------RVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPAD------  124 (176)
T ss_pred             --------------CCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccC------
Confidence                          245678999999999999999999999999999999999864321  1111111110000      


Q ss_pred             cccccCCCCHHHHH--HHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          687 DPVVLTTCSQESLS--IVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       687 d~~~~~~~~~~~~~--~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ++.. .........  .+.+++.+||+.+|++||++.|+++++.....
T Consensus       125 ~~~~-~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~  171 (176)
T smart00750      125 DPRD-RSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALFA  171 (176)
T ss_pred             Cccc-cccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Confidence            0000 001122222  58999999999999999999999999876643

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.88  E-value=1.1e-22  Score=214.80  Aligned_cols=140  Identities=18%  Similarity=0.181  Sum_probs=113.0

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC--CCcEEEEEEeecc-----chhcHHHHHHHHHHHhcCCCCCcce-eeeeeeccC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFL-----KKYSIQNLKVRLDFLSKLQHPHLVS-LLGHCIESG  509 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~--~g~~vAvK~l~~~-----~~~~~~~~~~E~~~l~~l~H~nIv~-l~g~~~~~~  509 (747)
                      ..++|...+.||+|+||+||+|+..  +++.||||++...     +....+.+.+|+++|++++|+|||+ ++++     
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~-----   90 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT-----   90 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc-----
Confidence            4567999999999999999999853  5788899987532     1223567899999999999999995 4432     


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC-CCCceeecCCCc
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL-TTNNILLDEHRI  588 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl-k~~NILld~~~~  588 (747)
                             ...++||||+++++|... ..   ..      ...++.|+++||.|||+   .+|+|||| ||+|||++.++.
T Consensus        91 -------~~~~LVmE~~~G~~L~~~-~~---~~------~~~~~~~i~~aL~~lH~---~gIiHrDL~KP~NILv~~~~~  150 (365)
T PRK09188         91 -------GKDGLVRGWTEGVPLHLA-RP---HG------DPAWFRSAHRALRDLHR---AGITHNDLAKPQNWLMGPDGE  150 (365)
T ss_pred             -------CCcEEEEEccCCCCHHHh-Cc---cc------hHHHHHHHHHHHHHHHH---CCCeeCCCCCcceEEEcCCCC
Confidence                   146999999999999732 11   11      14678899999999999   89999999 999999999999


Q ss_pred             EEEecccccccccc
Q 044236          589 AKLSDYGISIIMEE  602 (747)
Q Consensus       589 ~kl~DFGla~~~~~  602 (747)
                      +||+|||+|+....
T Consensus       151 ikLiDFGlA~~~~~  164 (365)
T PRK09188        151 AAVIDFQLASVFRR  164 (365)
T ss_pred             EEEEECccceeccc
Confidence            99999999987643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=5.7e-23  Score=214.85  Aligned_cols=227  Identities=22%  Similarity=0.221  Sum_probs=162.1

Q ss_pred             CCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCC
Q 044236           75 QTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFF  154 (747)
Q Consensus        75 ~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~  154 (747)
                      ++||.|....--.+++..-.+++.|+|++|.|+..--..|.+|.+|.+|.|+.|+++...+..|.+|++|+.|+|..|++
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            45554433222223445555666666666666655556666666677777777776666666666677777777776666


Q ss_pred             CCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCCC--
Q 044236          155 DDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPL--  231 (747)
Q Consensus       155 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~--  231 (747)
                      .-.---.|.+|++|+.|.|..|.++..-...|..|.+++.|+|..|+++..-. .+.+|+.|+.|+||.|.|...-+.  
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence            54434556666677777777777666666677777777888888888775444 367788888888888887654443  


Q ss_pred             -CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcC
Q 044236          232 -MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKD  301 (747)
Q Consensus       232 -~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~  301 (747)
                       ...+|.+|+|++|+|+...+..|..|.+|+.|+|+.|.++.+-...|..+++|+.|||++|.+++.|-+.
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence             2467889999999999888888888889999999999988888888888999999999999998887653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=3.7e-22  Score=208.85  Aligned_cols=227  Identities=21%  Similarity=0.215  Sum_probs=143.7

Q ss_pred             CCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccc
Q 044236           83 IDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWW  162 (747)
Q Consensus        83 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~  162 (747)
                      +..+|....-..+|+.|+|.+|.|...-.+++..++.|+.||||.|.++...-..|..-.++++|+|++|+++..-.+.|
T Consensus       114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F  193 (873)
T KOG4194|consen  114 LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF  193 (873)
T ss_pred             hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc
Confidence            44555555555567777777777766666667777777777777777765555566666777777777777777767777


Q ss_pred             cCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccC-CCCCCCCCcCCEEEccCCCCC---CCCCCCCCCcce
Q 044236          163 DSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK-LPDMSALTSLHVLDLRENKLD---SGLPLMPKGLVT  238 (747)
Q Consensus       163 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~l~~L~~L~L~~N~l~---~~~~~~~~~L~~  238 (747)
                      .++.+|..|.|+.|+++...+..|.+|++|+.|+|..|++.-. --.|..|++|+.|.|..|.+.   .+.+....++++
T Consensus       194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~  273 (873)
T KOG4194|consen  194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH  273 (873)
T ss_pred             cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence            7777777777777777766667777777777777777776522 112444555555555555432   122222345566


Q ss_pred             eecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCC
Q 044236          239 VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       239 L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      |+|..|+++..-.+++-+|++|+.|+||+|.|..+.++.+..+++|+.|+|++|+++..-|..|.+++.|+
T Consensus       274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            66666666655556666666666666666666666666666666666666666666654455554444443

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.85  E-value=3.3e-21  Score=187.29  Aligned_cols=139  Identities=16%  Similarity=0.153  Sum_probs=107.1

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchh--c-------H-----------------HHHHHHHHHHhcCCCCCc
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKY--S-------I-----------------QNLKVRLDFLSKLQHPHL  498 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~--~-------~-----------------~~~~~E~~~l~~l~H~nI  498 (747)
                      ...||+|+||.||+|...+|+.||||+++.....  .       .                 .....|++.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3679999999999999778999999999743210  0       0                 122349999999988877


Q ss_pred             ceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCcccCCCC
Q 044236          499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL-HSSVISGSFSNRLT  577 (747)
Q Consensus       499 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~ivHrDlk  577 (747)
                      .....+...          ..+|||||++++++......   ...+++.+...++.|++.+|.|+ |+   .+|+|||||
T Consensus        82 ~~p~~~~~~----------~~~iVmE~i~g~~l~~~~~~---~~~~~~~~~~~i~~qi~~~L~~l~H~---~giiHrDlk  145 (190)
T cd05147          82 PCPEPILLK----------SHVLVMEFIGDDGWAAPRLK---DAPLSESKARELYLQVIQIMRILYQD---CRLVHADLS  145 (190)
T ss_pred             CCCcEEEec----------CCEEEEEEeCCCCCcchhhh---cCCCCHHHHHHHHHHHHHHHHHHHHh---CCcccCCCC
Confidence            443332211          23899999998877654322   23588899999999999999999 56   789999999


Q ss_pred             CCceeecCCCcEEEecccccccc
Q 044236          578 TNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       578 ~~NILld~~~~~kl~DFGla~~~  600 (747)
                      |+|||++ ++.++|+|||+|...
T Consensus       146 P~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         146 EYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             HHHEEEE-CCcEEEEEccccccC
Confidence            9999998 478999999999643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.84  E-value=5.7e-21  Score=187.26  Aligned_cols=177  Identities=10%  Similarity=0.119  Sum_probs=130.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcH---HH------HHHHHHHHhcCCCCCcceeeeeeeccC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI---QN------LKVRLDFLSKLQHPHLVSLLGHCIESG  509 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~---~~------~~~E~~~l~~l~H~nIv~l~g~~~~~~  509 (747)
                      .++|...+++|+|+||.||.+.. ++..+|||.+........   ..      +.+|+..+.++.|++|.....++....
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            56799999999999999999766 466899999974322211   22      678999999999999999998866432


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcE
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIA  589 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~  589 (747)
                      ..........+|||||++|.+|.++..       ++.    ....+++.++..+|+   .+++|||+||+||+++.++ +
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~~~-------~~~----~~~~~i~~~l~~lH~---~gi~H~Dikp~Nili~~~g-i  173 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDMPE-------ISE----DVKAKIKASIESLHQ---HGMVSGDPHKGNFIVSKNG-L  173 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHhhh-------ccH----HHHHHHHHHHHHHHH---cCCccCCCChHHEEEeCCC-E
Confidence            110011235799999999999987632       222    345699999999999   8999999999999999988 9


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      +++|||..+..........                        ......|..++|+|||||.+.-.
T Consensus       174 ~liDfg~~~~~~e~~a~d~------------------------~vler~y~~~~di~~lg~~~~~~  215 (232)
T PRK10359        174 RIIDLSGKRCTAQRKAKDR------------------------IDLERHYGIKNEIKDLGYYLLIY  215 (232)
T ss_pred             EEEECCCcccccchhhHHH------------------------HHHHhHhcccccccceeEeehHH
Confidence            9999998765432221110                        11233456789999999988754

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.83  E-value=6.5e-21  Score=204.39  Aligned_cols=217  Identities=22%  Similarity=0.336  Sum_probs=155.3

Q ss_pred             HhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 044236          490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVIS  569 (747)
Q Consensus       490 l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  569 (747)
                      |+.+.|.|+.+++|.+...        ...++|.+||+.|+|.+.+...  ...++|.......+++++||+|+|..   
T Consensus         1 l~~l~h~n~~~f~g~~~~~--------~~~~~i~~~c~rGsl~D~i~~~--~~~~d~~F~~s~~rdi~~Gl~ylh~s---   67 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDG--------PEMIVIWEYCSRGSLLDILSNE--DIKLDYFFILSFIRDISKGLAYLHNS---   67 (484)
T ss_pred             CcccchhhhhhheeeEecC--------CceEEEEeeecCccHHhHHhcc--ccCccHHHHHHHHHHHHHHHHHHhcC---
Confidence            4678999999999999984        4789999999999999999763  55699999999999999999999984   


Q ss_pred             Cc-ccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-------CCCc
Q 044236          570 GS-FSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-------RTKL  641 (747)
Q Consensus       570 ~i-vHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-------~~s~  641 (747)
                      +| .|+.++++|+++|..+.+|++|||+...........   ....       ......|.+||.+...       ..+.
T Consensus        68 ~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~---~~~~-------~~~~~lw~aPellr~~~~~~~~~~~~~  137 (484)
T KOG1023|consen   68 PIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPE---AHHP-------IRKALLWTAPELLRGALSQSLESALTQ  137 (484)
T ss_pred             cceeeeeeccccceeeeeEEEEechhhhccccccccccc---ccch-------hHHHHhccCHHHhcccccccccccccc
Confidence            33 999999999999999999999999986654300000   0000       1112345566666542       2467


Q ss_pred             CCceeehhHHHHHHhhCCCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH
Q 044236          642 EDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF  720 (747)
Q Consensus       642 k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  720 (747)
                      ++||||||++++|+++++.||+..... ...++...... .....+.|.+....  +....+..++.+||.++|.+||++
T Consensus       138 ~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~-~~~~~~rP~i~~~~--e~~~~l~~l~~~cw~e~P~~rPs~  214 (484)
T KOG1023|consen  138 KGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKK-GGSNPFRPSIELLN--ELPPELLLLVARCWEEIPEKRPSI  214 (484)
T ss_pred             cCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHh-cCCCCcCcchhhhh--hcchHHHHHHHHhcccChhhCccH
Confidence            899999999999999999998752211 11122211111 11222233322111  333358889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 044236          721 EDVLWNLQYAAQ  732 (747)
Q Consensus       721 ~evl~~L~~~~~  732 (747)
                      .+|-..++.+-.
T Consensus       215 ~~i~~~~~~~~~  226 (484)
T KOG1023|consen  215 EQIRSKLLTINK  226 (484)
T ss_pred             HHHHhhhhhhcc
Confidence            999887765533

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.83  E-value=9.4e-20  Score=193.36  Aligned_cols=270  Identities=19%  Similarity=0.132  Sum_probs=184.5

Q ss_pred             CCCccccccCCCCeeEEEEEeCC--CcEEEEEEeeccchhcHHHHHHHHHHHhcCCC----CCcceeeeeee-ccCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLEN--GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH----PHLVSLLGHCI-ESGSQDD  513 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~--g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H----~nIv~l~g~~~-~~~~~~~  513 (747)
                      +|.+.+.||+|+||.||+|....  ...+|+|............+..|+.++..+.+    +++..+++... .      
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~------   92 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRST------   92 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCC------
Confidence            78999999999999999999544  35788888765433322367788998888863    57888887663 2      


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-----Cc
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-----RI  588 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-----~~  588 (747)
                        ....++||+.+ +.+|.++..... ...++-.+.+.|+.|++.+|.++|+   .+++||||||.|+++...     ..
T Consensus        93 --~~~~~iVM~l~-G~sL~dl~~~~~-~~~fs~~T~l~ia~q~l~~l~~lH~---~G~iHRDiKp~N~~~g~~~~~~~~~  165 (322)
T KOG1164|consen   93 --EDFNFIVMSLL-GPSLEDLRKRNP-PGRFSRKTVLRIAIQNLNALEDLHS---KGFIHRDIKPENFVVGQSSRSEVRT  165 (322)
T ss_pred             --CceeEEEEecc-CccHHHHHHhCC-CCCcCHhHHHHHHHHHHHHHHHHHh---cCcccCCcCHHHeeecCCCCcccce
Confidence              34679999988 669999765443 4679999999999999999999999   899999999999999754     46


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-  667 (747)
                      +++.|||+++............  .........+.++..|..+........+.+.|+||++-++.|+..|..||..... 
T Consensus       166 ~~llDfGlar~~~~~~~~~~~~--~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~  243 (322)
T KOG1164|consen  166 LYLLDFGLARRFKYVGDSGGNL--RPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMT  243 (322)
T ss_pred             EEEEecCCCccccccCCCCccc--ccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCcccccc
Confidence            8999999997322111100000  0000000112355566666666677788899999999999999999999864332 


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .....+.........    .+  ...+.+.   .+.+++..+-..+...+|....+...++.+....
T Consensus       244 ~~~~~~~~~~~~~~~----~~--~~~~~~~---~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  244 DLKSKFEKDPRKLLT----DR--FGDLKPE---EFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             chHHHHHHHhhhhcc----cc--ccCCChH---HHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            112222211111100    00  1112222   2455555555689999999999999988775543

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.83  E-value=1.6e-19  Score=192.34  Aligned_cols=262  Identities=21%  Similarity=0.272  Sum_probs=190.2

Q ss_pred             CCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchh---cHHHHHHHHHHHhcCCCC-CcceeeeeeeccCCCCCCCCc
Q 044236          442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKY---SIQNLKVRLDFLSKLQHP-HLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~---~~~~~~~E~~~l~~l~H~-nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      |...+.||.|+||.||++...  ..+|+|.+......   ....+.+|+.+++.+.|+ +|+++++++...        .
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--------~   71 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDE--------G   71 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecC--------C
Confidence            566788999999999999976  78899998754332   367899999999999988 799999988542        2


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-cEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGl  596 (747)
                      ..++++||+.++++.+++........+.......+..|++.++.|+|+   .+++|||+||+||+++... .++++|||.
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~---~~~~hrd~kp~nil~~~~~~~~~l~dfg~  148 (384)
T COG0515          72 SLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS---KGIIHRDIKPENILLDRDGRVVKLIDFGL  148 (384)
T ss_pred             EEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeecCCCCeEEEeccCc
Confidence            479999999999999766543111258888999999999999999999   7799999999999999988 799999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec---cCCCcCCceeehhHHHHHHhhCCCCCCCChh----hh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI---QRTKLEDDVYNFGFILLESLVGPIVTGKGEA----FL  669 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~----~~  669 (747)
                      ++............      .......++..+.+||....   ..++...|+||+|++++++++|..|+.....    ..
T Consensus       149 ~~~~~~~~~~~~~~------~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~  222 (384)
T COG0515         149 AKLLPDPGSTSSIP------ALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQ  222 (384)
T ss_pred             ceecCCCCcccccc------ccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHH
Confidence            97443322111000      01123456778889998876   5788899999999999999999888765432    12


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...........    .................+.+++..|+..+|..|.++.+....
T Consensus       223 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         223 TLKIILELPTP----SLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             HHHHHHhcCCc----ccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            22221111111    000000000011223457788899999999999998887764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=1e-19  Score=208.64  Aligned_cols=276  Identities=21%  Similarity=0.354  Sum_probs=189.4

Q ss_pred             ChhHHHHHHHHHhcCCCCCCCCC----CCCCCCCCccccc-----------CCccceEeCCCcEEEEecCCCCCCCCC-C
Q 044236            2 QTSQTQVLLQLRKHLEYPSPLDI----WGNYEGDLCNLTS-----------TAHVSITCQDNSVTGLKIMGDKPVKEN-T   65 (747)
Q Consensus         2 ~~~~~~~l~~~k~~~~~~~~l~~----w~~~~~~~c~~~~-----------~~~~~v~c~~~~v~~l~l~~~~~~~~~-~   65 (747)
                      .++|.+.+++..+.+.+|+.++.    |++. +++|....           .....|.|.+.+||.+...|....... +
T Consensus        61 ~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~~~~~  139 (754)
T PRK15370         61 SPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQASSASG  139 (754)
T ss_pred             CHHHHHHHHHHHHHhcCCchhhccccccCCC-CcccccCCcchhhheeeecCCceEEecCCCcccccccccccccccCCC
Confidence            47899999999999999987676    9876 89998776           566779999999999888774331100 0


Q ss_pred             -----CCCC-------C----------------------CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCC
Q 044236           66 -----AYNG-------H----------------------PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLP  111 (747)
Q Consensus        66 -----~~~~-------~----------------------~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p  111 (747)
                           .+..       .                      ....+.++. ..+.++|..+.  ++|+.|+|++|+|. .+|
T Consensus       140 ~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~-~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP  215 (754)
T PRK15370        140 SKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKI-LGLTTIPACIP--EQITTLILDNNELK-SLP  215 (754)
T ss_pred             CCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCC-CCcCcCCcccc--cCCcEEEecCCCCC-cCC
Confidence                 0000       0                      001122222 23445665553  47888999999886 467


Q ss_pred             hhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCcc
Q 044236          112 DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT  191 (747)
Q Consensus       112 ~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~  191 (747)
                      ..+.  ++|++|+|++|.|+ .+|..+.  .+|+.|+|++|.+. .+|..+.  .+|+.|++++|+|+ .+|..+.  .+
T Consensus       216 ~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~s  284 (754)
T PRK15370        216 ENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EE  284 (754)
T ss_pred             hhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CC
Confidence            6554  58899999998886 4566553  46888888888887 4666654  57888888888888 4676654  47


Q ss_pred             CcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCc
Q 044236          192 LTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLS  271 (747)
Q Consensus       192 L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  271 (747)
                      |+.|++++|+|++..+.+.  .+|+.|++++|+++...+..+.+|+.|++++|.+++ +|..+.  ++|+.|+|++|+|+
T Consensus       285 L~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~  359 (754)
T PRK15370        285 LRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT  359 (754)
T ss_pred             CcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence            8888888888886433332  467778888888775333345678888888888775 565553  57888888888887


Q ss_pred             ccCCcccCCCCccceeecccccCccccCcCC
Q 044236          272 GIPPSVLFSLPNISYLHLASNMLSGTLPKDL  302 (747)
Q Consensus       272 ~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~  302 (747)
                      .+|. .+  .++|+.|+|++|+|+ .+|..+
T Consensus       360 ~LP~-~l--p~~L~~LdLs~N~Lt-~LP~~l  386 (754)
T PRK15370        360 VLPE-TL--PPTITTLDVSRNALT-NLPENL  386 (754)
T ss_pred             cCCh-hh--cCCcCEEECCCCcCC-CCCHhH
Confidence            6543 23  257788888888877 455543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.82  E-value=4.7e-20  Score=180.00  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=109.7

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchh--------------------------cHHHHHHHHHHHhcCCCCCc
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKY--------------------------SIQNLKVRLDFLSKLQHPHL  498 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~--------------------------~~~~~~~E~~~l~~l~H~nI  498 (747)
                      ...||+|+||+||+|+..+|+.||||+++.....                          ....+..|.+.+.+++|++|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4679999999999999778999999998743210                          01224578999999999988


Q ss_pred             ceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccc-cccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCC
Q 044236          499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH-LSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLT  577 (747)
Q Consensus       499 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~-l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk  577 (747)
                      .....+...          ..++||||++++++... +.    ...++......++.|++.++.|+|+.  .+|+|||||
T Consensus        82 ~~p~~~~~~----------~~~lVmE~~~g~~~~~~~l~----~~~~~~~~~~~i~~~l~~~l~~lH~~--~givHrDlk  145 (190)
T cd05145          82 PVPEPILLK----------KNVLVMEFIGDDGSPAPRLK----DVPLEEEEAEELYEQVVEQMRRLYQE--AGLVHGDLS  145 (190)
T ss_pred             CCceEEEec----------CCEEEEEEecCCCchhhhhh----hccCCHHHHHHHHHHHHHHHHHHHHh--CCEecCCCC
Confidence            554443322          23899999998865433 32    23467788899999999999999983  589999999


Q ss_pred             CCceeecCCCcEEEeccccccccc
Q 044236          578 TNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       578 ~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      |+||+++ ++.++|+|||+++.+.
T Consensus       146 P~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145         146 EYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             hhhEEEE-CCCEEEEEcccceecC
Confidence            9999999 8899999999997654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.82  E-value=2.8e-20  Score=175.11  Aligned_cols=262  Identities=14%  Similarity=0.103  Sum_probs=175.1

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCC-CCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH-PHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H-~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .+.|.+++.||+|+||.+|.|. ..+|+.||||.-...  ....+...|..+.+.|+| ..|..+.-|..+        .
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~--a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e--------~   83 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK--AKHPQLLYESKVYRILQGGVGIPHIRHYGTE--------K   83 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeeccc--CCCcchhHHHHHHHHhccCCCCchhhhhccc--------c
Confidence            3579999999999999999998 788999999976532  223456778888888876 455555555444        2


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---CCcEEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---HRIAKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~D  593 (747)
                      ..-.+|||.. +.+|.++..-.  ...++..+.+-++-|++.-++|+|.   .++|||||||+|.|+.-   ...+.++|
T Consensus        84 ~ynvlVMdLL-GPsLEdLfnfC--~R~ftmkTvLMLaDQml~RiEyvH~---r~fiHRDIKPdNFLMGlgrh~~kl~LID  157 (341)
T KOG1163|consen   84 DYNVLVMDLL-GPSLEDLFNFC--SRRFTMKTVLMLADQMLSRIEYVHL---RNFIHRDIKPDNFLMGLGRHCNKLYLID  157 (341)
T ss_pred             ccceeeeecc-CccHHHHHHHH--hhhhhHHhHHHHHHHHHHHHHHHHh---hccccccCCccceeeccccccceEEEEe
Confidence            3568999998 66888877533  3458889999999999999999999   78899999999999963   45689999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH-H
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN-E  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~-~  672 (747)
                      ||+|+...+..+.......     .-.-..+++.|.......+..-+...|+=|.|.+|.....|..||..-....-. +
T Consensus       158 FGLaKky~d~~t~~HIpyr-----e~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QK  232 (341)
T KOG1163|consen  158 FGLAKKYRDIRTRQHIPYR-----EDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQK  232 (341)
T ss_pred             ccchhhhccccccccCccc-----cCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHH
Confidence            9999876554332221110     001123344443332233334466779999999999999999999864332211 1


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ...+. +.+.. ..-..+...+|.|    +...+.-|-..--++-|...-+-+..
T Consensus       233 yEkI~-EkK~s-~~ie~LC~G~P~E----F~myl~Y~R~L~F~E~Pdy~ylrqlF  281 (341)
T KOG1163|consen  233 YEKIS-EKKMS-TPIEVLCKGFPAE----FAMYLNYCRGLGFEEKPDYMYLRQLF  281 (341)
T ss_pred             HHHHH-HhhcC-CCHHHHhCCCcHH----HHHHHHHHhhcCCCCCCcHHHHHHHH
Confidence            11111 11111 1111223344554    66667788777777777755444433

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=5.2e-21  Score=215.37  Aligned_cols=257  Identities=17%  Similarity=0.159  Sum_probs=177.0

Q ss_pred             ccccccCCCCeeEEEEE-eCCCcEEEEEEeec-----cch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          444 SLSFMGEGSRGKLYKGR-LENGTYVAIRSLTF-----LKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~-----~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ....+|.|++|.|+... .......+.|..+.     ... .....+..|..+=..++|||++..+..+.+..       
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~-------  394 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEID-------  394 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcc-------
Confidence            45779999999888776 33444445444321     111 11122566777778899999988887776532       


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                       ...-+||||++ ||+.++...   ..+...++..++.|+..|+.|+|+   .+|.|||+|++|+++..++.+||+|||.
T Consensus       395 -~~~~~mE~~~~-Dlf~~~~~~---~~~~~~e~~c~fKqL~~Gv~y~h~---~GiahrdlK~enll~~~~g~lki~Dfg~  466 (601)
T KOG0590|consen  395 -GILQSMEYCPY-DLFSLVMSN---GKLTPLEADCFFKQLLRGVKYLHS---MGLAHRDLKLENLLVTENGILKIIDFGA  466 (601)
T ss_pred             -cchhhhhcccH-HHHHHHhcc---cccchhhhhHHHHHHHHHHHHHHh---cCceeccCccccEEEecCCceEEeecCc
Confidence             33444999999 999988752   357788889999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCc-CCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL-EDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~-k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +....-......        .-...+++..+|.|||++....|++ ..||||.|||+..|++|+.||.......-.. ..
T Consensus       467 ~~vf~~~~e~~~--------~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~-~~  537 (601)
T KOG0590|consen  467 ASVFRYPWEKNI--------HESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSF-KT  537 (601)
T ss_pred             ceeeccCcchhh--------hhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccch-hh
Confidence            854321111000        0011246778999999999999875 6899999999999999999986432211100 00


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .....+ ..+....  .............++.++++.||.+|.|+.+|+++=
T Consensus       538 ~~~~~~-~~~~~~~--~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~  586 (601)
T KOG0590|consen  538 NNYSDQ-RNIFEGP--NRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDE  586 (601)
T ss_pred             hccccc-cccccCh--HHHHHhchhhHHHHHHHHccCChhheecHHHHhhCh
Confidence            000000 0111100  011123344578899999999999999999998753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=1.8e-21  Score=204.67  Aligned_cols=215  Identities=27%  Similarity=0.354  Sum_probs=134.2

Q ss_pred             CCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCC-CCCCccccCCCCCCEEEcccCCCCCCCccc
Q 044236           83 IDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLF-GAIPSGISRLVRLQTLTMDTNFFDDNVPDW  161 (747)
Q Consensus        83 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~  161 (747)
                      +..+|..++.|.+|+.|++++|++.. +-..++.|+.|+.+++..|++. .-+|..+..|..|+.|||++|++.. .|..
T Consensus        44 L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~  121 (1255)
T KOG0444|consen   44 LEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTN  121 (1255)
T ss_pred             hhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchh
Confidence            45567777777777777777777643 4445666666777777666663 3456666677777777777777654 5666


Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCC--------------
Q 044236          162 WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS--------------  227 (747)
Q Consensus       162 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~--------------  227 (747)
                      +..-+++-.|+||+|+|.....+-|-+|+.|-.||||+|+|...+|.+..|..|++|+|++|.|.-              
T Consensus       122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v  201 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV  201 (1255)
T ss_pred             hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence            666677777777777776322244556677777777777776666666666666777777665421              


Q ss_pred             -----------CCCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeeccccc
Q 044236          228 -----------GLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM  293 (747)
Q Consensus       228 -----------~~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~  293 (747)
                                 .+|..   ..+|..++||.|++. .+|..+.++.+|+.|+||+|+|+.+-.. .....+|++|+|+.|+
T Consensus       202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccch
Confidence                       12221   134556677777776 5677777777777777777777654332 2334455555555555


Q ss_pred             CccccCcCC
Q 044236          294 LSGTLPKDL  302 (747)
Q Consensus       294 l~g~ip~~~  302 (747)
                      ++ .+|..+
T Consensus       280 Lt-~LP~av  287 (1255)
T KOG0444|consen  280 LT-VLPDAV  287 (1255)
T ss_pred             hc-cchHHH
Confidence            55 444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=2.3e-21  Score=203.82  Aligned_cols=223  Identities=27%  Similarity=0.320  Sum_probs=176.5

Q ss_pred             CCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCccc
Q 044236           82 SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDW  161 (747)
Q Consensus        82 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~  161 (747)
                      .-..+|+.+..|..|.+|||++|++ ...|..+.+-+++-.||||+|++..+....|-+|+.|-.|||++|++.. +|+.
T Consensus        91 KnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ  168 (1255)
T KOG0444|consen   91 KNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQ  168 (1255)
T ss_pred             ccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHH
Confidence            3456788899999999999999998 5688888888999999999999865555567889999999999999865 6667


Q ss_pred             ccCCCCCCEEEccCCcCC-------------------------CCCchhhcCCccCcEEecccCccccCCCCCCCCCcCC
Q 044236          162 WDSLSNLTVLSLKSNQLK-------------------------GQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLH  216 (747)
Q Consensus       162 ~~~l~~L~~L~l~~N~l~-------------------------~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~  216 (747)
                      +..|.+|+.|+|++|.+.                         ..+|.++-.|.+|..+|+|.|+|.-.+..+.++++|+
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lr  248 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLR  248 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhh
Confidence            888888888888888643                         2477888888899999999999985544688999999


Q ss_pred             EEEccCCCCCCCCCC--CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCc--ccCCcccCCCCccceeecccc
Q 044236          217 VLDLRENKLDSGLPL--MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLS--GIPPSVLFSLPNISYLHLASN  292 (747)
Q Consensus       217 ~L~L~~N~l~~~~~~--~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~N  292 (747)
                      .|+||+|+|+.--..  ...+|++|+||.|+++ .+|..+..|+.|+.|.+.+|+++  |+| +-++.+.+|+.+..++|
T Consensus       249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP-SGIGKL~~Levf~aanN  326 (1255)
T KOG0444|consen  249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP-SGIGKLIQLEVFHAANN  326 (1255)
T ss_pred             eeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc-cchhhhhhhHHHHhhcc
Confidence            999999998753221  2457899999999998 68999999999999999999875  444 45678888888888877


Q ss_pred             cCccccCcCCCCCCCCC
Q 044236          293 MLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       293 ~l~g~ip~~~~~~~~l~  309 (747)
                      .+. .+|..+..+.+|+
T Consensus       327 ~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  327 KLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             ccc-cCchhhhhhHHHH
Confidence            776 6676665444433

>PRK10345 hypothetical protein; Provisional

Probab=99.78  E-value=8.1e-19  Score=171.96  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             CCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-----CCCCcceeeeeeeccCCCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-----QHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-----~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      +...+.||+|+||.||. ...++.. +||++........+.+.+|+.+++.+     .||||++++|++.+..     +.
T Consensus         4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~-----g~   76 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDC-----GT   76 (210)
T ss_pred             cCCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCC-----CC
Confidence            34467899999999996 3234444 69988755444567899999999999     5799999999987632     11


Q ss_pred             ce-EEEEEec--cCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHH-HHhhcCCCCCcccCCCCCCceeecC----CCc
Q 044236          517 NK-VFLVYEY--IPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV-HFLHSSVISGSFSNRLTTNNILLDE----HRI  588 (747)
Q Consensus       517 ~~-~~lv~Ey--~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL-~yLH~~~~~~ivHrDlk~~NILld~----~~~  588 (747)
                      .. +.+||||  +++|+|.+++.+.    .+++.  ..++.+++.++ +|||+   .+|+||||||+|||++.    ++.
T Consensus        77 g~v~~~I~e~~G~~~~tL~~~l~~~----~~~e~--~~~~~~~L~~l~~yLh~---~~IvhrDlKp~NILl~~~~~~~~~  147 (210)
T PRK10345         77 GYVYDVIADFDGKPSITLTEFAEQC----RYEED--VAQLRQLLKKLKRYLLD---NRIVTMELKPQNILCQRISESEVI  147 (210)
T ss_pred             eEEEEEEecCCCCcchhHHHHHHcc----cccHh--HHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEeccCCCCCc
Confidence            23 4479999  6689999999642    25544  35678888777 99999   88999999999999973    348


Q ss_pred             EEEeccccc
Q 044236          589 AKLSDYGIS  597 (747)
Q Consensus       589 ~kl~DFGla  597 (747)
                      ++|+||+-+
T Consensus       148 ~~LiDg~G~  156 (210)
T PRK10345        148 PVVCDNIGE  156 (210)
T ss_pred             EEEEECCCC
Confidence            999995444

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.76  E-value=6.4e-18  Score=166.45  Aligned_cols=209  Identities=15%  Similarity=0.133  Sum_probs=159.5

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      -+|.+.++||+|+||+.+.|+ +-+++.||||--...+  +..++.-|....+.|. -++|...|.+-.+        +.
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vYYFGqe--------G~   97 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVYYFGQE--------GK   97 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCceeeeccc--------cc
Confidence            368899999999999999998 7789999999654332  2345666777777775 5788776643322        34


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-----CcEEEe
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-----RIAKLS  592 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-----~~~kl~  592 (747)
                      +-.||+|.+ +-||.++..-+  +..++..++..||.|++.-++|+|+   ..+|.|||||+|.||..-     ..+.|.
T Consensus        98 ~NiLVidLL-GPSLEDLFD~C--gR~FSvKTV~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~Ihii  171 (449)
T KOG1165|consen   98 YNILVIDLL-GPSLEDLFDLC--GRRFSVKTVAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHII  171 (449)
T ss_pred             hhhhhhhhh-CcCHHHHHHHh--cCcccHHhHHHHHHHHHHHHHHHHh---cceeecccCccceeecCCCCCCCceEEEE
Confidence            568999998 66888877543  3458999999999999999999999   788999999999999643     468999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL  669 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~  669 (747)
                      |||+|+...+..+.....     +..--...|++.||......++.-+...|.=|+|-+++..+.|..||..-....
T Consensus       172 DFGmAK~YrDp~TkqHIP-----YrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~t  243 (449)
T KOG1165|consen  172 DFGMAKEYRDPKTKQHIP-----YREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADT  243 (449)
T ss_pred             eccchhhhcCccccccCc-----cccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcc
Confidence            999998776544332211     111112457778888777777777888999999999999999999998654443

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=6e-18  Score=162.21  Aligned_cols=194  Identities=14%  Similarity=0.104  Sum_probs=128.6

Q ss_pred             CccccccCCCCeeEEEEEeCCCcEEEEEEeeccchh----cHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCc
Q 044236          443 DSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKY----SIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~----~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .+...|++|+||+||.+.. .+..++.+.+.....-    ....+.+|+++|++|. |++|.+++++.            
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~------------   71 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWD------------   71 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEc------------
Confidence            4567899999999997766 5777887777643321    1225789999999995 58899998862            


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC-CCCceeecCCCcEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL-TTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl-k~~NILld~~~~~kl~DFGl  596 (747)
                      ..+++|||+++.+|.+.+..          ....++.|++++|.|+|+   .+|+|||| ||+|||++.++.++|+|||+
T Consensus        72 ~~~lvmeyI~G~~L~~~~~~----------~~~~~~~qi~~~L~~lH~---~GIvHrDL~kp~NILv~~~g~i~LIDFG~  138 (218)
T PRK12274         72 GRHLDRSYLAGAAMYQRPPR----------GDLAYFRAARRLLQQLHR---CGVAHNDLAKEANWLVQEDGSPAVIDFQL  138 (218)
T ss_pred             CEEEEEeeecCccHHhhhhh----------hhHHHHHHHHHHHHHHHH---CcCccCCCCCcceEEEcCCCCEEEEECCC
Confidence            35899999999888754321          113577899999999999   89999999 79999999999999999999


Q ss_pred             cccccccchh-c-ccCCCCCcccccceeeecCCcceeeeee-ccCCC-cCCceeehhHHHHHHhhCCCCCC
Q 044236          597 SIIMEEHEKL-E-AKGEGPKARYGFLFICRTSAENVVIVVD-IQRTK-LEDDVYNFGFILLESLVGPIVTG  663 (747)
Q Consensus       597 a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s-~k~DVwSfGvvl~Elltg~~p~~  663 (747)
                      |......... . ...........+ .-.+++.+..|+... -...+ ...+.++-|.-+|.++||..|..
T Consensus       139 A~~~~~~~~~~r~L~~rDl~~llk~-~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~  208 (218)
T PRK12274        139 AVRGNPRARWMRLLAREDLRHLLKH-KRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHW  208 (218)
T ss_pred             ceecCCcchHHHHHHHHHHHHHHHH-HHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcc
Confidence            9744322210 0 000000000000 001112222221110 01112 34578899999999999987764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=3.9e-19  Score=198.98  Aligned_cols=247  Identities=19%  Similarity=0.212  Sum_probs=171.8

Q ss_pred             CCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc-hhcHHHHHHHHHH--HhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVRLDF--LSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~~~E~~~--l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++...+.+|++.|=+|.+|+.+.|. |+||++-..+ ....+.|.++++-  ...++|||.+++.-+-..        ..
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t--------~k   94 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVT--------DK   94 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHh--------hH
Confidence            5666788999999999999988887 8899986544 4455556555444  445689999998765433        23


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..|||=+|..+ +|++.+..   +..|...+.+-|+.|+..||.-+|.   .+|+|+|||.+||||..-.-+.|+||.--
T Consensus        95 AAylvRqyvkh-nLyDRlST---RPFL~~iEKkWiaFQLL~al~qcH~---~gVcHGDIKsENILiTSWNW~~LtDFAsF  167 (1431)
T KOG1240|consen   95 AAYLVRQYVKH-NLYDRLST---RPFLVLIEKKWIAFQLLKALSQCHK---LGVCHGDIKSENILITSWNWLYLTDFASF  167 (1431)
T ss_pred             HHHHHHHHHhh-hhhhhhcc---chHHHHHHHHHHHHHHHHHHHHHHH---cCccccccccceEEEeeechhhhhccccc
Confidence            56888899866 89998875   3457778889999999999999999   89999999999999999888999999865


Q ss_pred             ccccccchhcccCCCCCcccccce--eeecCCcceeeeeec-----------cCCCcCCceeehhHHHHHHhh-CCCCCC
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLF--ICRTSAENVVIVVDI-----------QRTKLEDDVYNFGFILLESLV-GPIVTG  663 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~-----------~~~s~k~DVwSfGvvl~Ellt-g~~p~~  663 (747)
                      |...-       ....++.|.|.+  -.+...|.|||.+..           ...+++.||||.|||+.||++ |+++|.
T Consensus       168 KPtYL-------PeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~  240 (1431)
T KOG1240|consen  168 KPTYL-------PEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFT  240 (1431)
T ss_pred             CCccC-------CCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCccc
Confidence            42110       001111122111  111223445554322           125778899999999999998 577775


Q ss_pred             CChhhhHHHHHhccCcCC----ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          664 KGEAFLLNEMASFGSQDG----RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      -   .++..+.+.. ...    .+.+-|+            .+++++..|++.||++|-++++.++.
T Consensus       241 L---SQL~aYr~~~-~~~~e~~Le~Ied~------------~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  241 L---SQLLAYRSGN-ADDPEQLLEKIEDV------------SLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             H---HHHHhHhccC-ccCHHHHHHhCcCc------------cHHHHHHHHHccCchhccCHHHHHHh
Confidence            2   2222222211 111    1111121            37889999999999999999999876

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.74  E-value=4.7e-19  Score=189.62  Aligned_cols=224  Identities=21%  Similarity=0.273  Sum_probs=168.8

Q ss_pred             cccCCCCeeEEEEE----eCCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCceE
Q 044236          447 FMGEGSRGKLYKGR----LENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~----~~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .+|+|.||.|+.++    .+.|+.+|.|.+++...  ........|..++..++ ||.+|++...+..        ....
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt--------~~kl   72 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQT--------DGKL   72 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeecc--------ccch
Confidence            37999999999875    24478888888864321  11124566888888887 9999999866655        3478


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      +++++|..+|++...+.+.   ..++......+...++-|++++|+   .+|+|||+|++||+++.+|++|+.|||+++.
T Consensus        73 ~l~ld~~rgg~lft~l~~~---~~f~~~~~~~~~aelaLald~lh~---l~iiyrd~k~enilld~~Ghi~~tdfglske  146 (612)
T KOG0603|consen   73 YLILDFLRGGDLFTRLSKE---VMFDELDVAFYLAELALALDHLHK---LGIAYRDYKLENVLLLLEGHIKLTDFGLSKE  146 (612)
T ss_pred             hHhhhhcccchhhhccccC---CchHHHHHHHHHHHHHHHHhhcch---hHHHHhcccccceeecccCccccCCchhhhH
Confidence            9999999999999988753   346667777788889999999999   8999999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      .-..+.                .|++..|||||+..  .....+|.|||||+++||+||..||..   +....+...   
T Consensus       147 ~v~~~~----------------~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~---~~~~~Il~~---  202 (612)
T KOG0603|consen  147 AVKEKI----------------ACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG---DTMKRILKA---  202 (612)
T ss_pred             hHhhhh----------------cccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch---HHHHHHhhh---
Confidence            543322                16777899999887  567789999999999999999999875   222222110   


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS  719 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs  719 (747)
                                 ....|.+....+.+++.+....+|..|--
T Consensus       203 -----------~~~~p~~l~~~a~~~~~~l~~r~p~nrLg  231 (612)
T KOG0603|consen  203 -----------ELEMPRELSAEARSLFRQLFKRNPENRLG  231 (612)
T ss_pred             -----------ccCCchhhhHHHHHHHHHHHhhCHHHHhc
Confidence                       01224445555666777777778877753

>smart00090 RIO RIO-like kinase

Probab=99.74  E-value=8.6e-18  Score=168.99  Aligned_cols=141  Identities=13%  Similarity=0.099  Sum_probs=108.9

Q ss_pred             CCCccccccCCCCeeEEEEE--eCCCcEEEEEEeeccchh------------------------cHHHHHHHHHHHhcCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGR--LENGTYVAIRSLTFLKKY------------------------SIQNLKVRLDFLSKLQ  494 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~--~~~g~~vAvK~l~~~~~~------------------------~~~~~~~E~~~l~~l~  494 (747)
                      .|++.+.||+|+||.||+|.  ..+|+.||||+++.....                        ....+..|++.+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999998  568999999998743210                        0123568999999997


Q ss_pred             CCC--cceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-c
Q 044236          495 HPH--LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG-S  571 (747)
Q Consensus       495 H~n--Iv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~-i  571 (747)
                      +..  +.+.+++.            ..++||||+++++|......   ...+...+...++.|++.++.|||+   .+ |
T Consensus       109 ~~~i~~p~~~~~~------------~~~lV~E~~~g~~L~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~---~g~i  170 (237)
T smart00090      109 EAGVPVPKPIAWR------------RNVLVMEFIGGDGLPAPRLK---DVEPEEEEEFELYDDILEEMRKLYK---EGEL  170 (237)
T ss_pred             hcCCCCCeeeEec------------CceEEEEEecCCcccccccc---cCCcchHHHHHHHHHHHHHHHHHHh---cCCE
Confidence            633  33334321            24899999999888766532   2235555678899999999999999   77 9


Q ss_pred             ccCCCCCCceeecCCCcEEEecccccccc
Q 044236          572 FSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       572 vHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +||||||+||+++ ++.++|+|||.+...
T Consensus       171 iH~Dikp~NIli~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      171 VHGDLSEYNILVH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             EeCCCChhhEEEE-CCCEEEEEChhhhcc
Confidence            9999999999999 889999999998643

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.73  E-value=1.9e-17  Score=163.06  Aligned_cols=137  Identities=17%  Similarity=0.147  Sum_probs=107.7

Q ss_pred             CCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccch----------------------hcHHHHHHHHHHHhcCCCCC-
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK----------------------YSIQNLKVRLDFLSKLQHPH-  497 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~----------------------~~~~~~~~E~~~l~~l~H~n-  497 (747)
                      .|.+.+.||+|+||.||+|..++|+.||||++.....                      ........|..++.++.|++ 
T Consensus        16 ~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            4777899999999999999988899999998763220                      01123567888999998874 


Q ss_pred             -cceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          498 -LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       498 -Iv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                       +.+.++.            ...++||||+++++|......         .....++.+++.++.++|+   .+|+||||
T Consensus        96 ~v~~~~~~------------~~~~lv~e~~~g~~L~~~~~~---------~~~~~~~~~i~~~l~~lh~---~gi~H~Dl  151 (198)
T cd05144          96 PVPKPIDW------------NRHAVVMEYIDGVELYRVRVL---------EDPEEVLDEILEEIVKAYK---HGIIHGDL  151 (198)
T ss_pred             CCCceeec------------CCceEEEEEeCCcchhhcccc---------ccHHHHHHHHHHHHHHHHH---CCCCcCCC
Confidence             4444432            135899999999998765431         2345788899999999999   89999999


Q ss_pred             CCCceeecCCCcEEEeccccccccc
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      ||+||+++.++.++|+|||++....
T Consensus       152 ~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         152 SEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             CcccEEEcCCCcEEEEECCccccCC
Confidence            9999999999999999999985543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.2e-17  Score=191.81  Aligned_cols=255  Identities=20%  Similarity=0.290  Sum_probs=184.3

Q ss_pred             EeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEE
Q 044236           44 TCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELL  123 (747)
Q Consensus        44 ~c~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L  123 (747)
                      .|.....+.|.+.+..+...+..+ +..+..++|+.| .+..+|..+.  .+|+.|+|++|+|. .+|..+.  .+|+.|
T Consensus       174 ~Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L  246 (754)
T PRK15370        174 DCLKNNKTELRLKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEM  246 (754)
T ss_pred             hhcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEE
Confidence            465556677888765542111111 123444566655 4556776654  58999999999996 5787654  479999


Q ss_pred             EcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccc
Q 044236          124 DMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS  203 (747)
Q Consensus       124 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  203 (747)
                      +|++|.+. .+|..+.  .+|+.|+|++|.++. +|..+.  ++|+.|++++|+|++ +|..+.  .+|+.|++++|.++
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            99999987 6787764  589999999999985 677664  589999999999985 565543  47899999999998


Q ss_pred             cCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCc
Q 044236          204 GKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN  283 (747)
Q Consensus       204 ~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  283 (747)
                      ...+.+  .++|+.|++++|.+++.....+++|+.|++++|+|+ .+|..+.  ++|+.|+|++|+|+.+|+...   ..
T Consensus       318 ~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~---~s  389 (754)
T PRK15370        318 ALPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP---AA  389 (754)
T ss_pred             cCCccc--cccceeccccCCccccCChhhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH---HH
Confidence            643333  368999999999998633345678999999999998 4676664  689999999999998776532   47


Q ss_pred             cceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          284 ISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       284 L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      |+.|++++|+|+ .+|..+.....  ..+....+.+.+|.++
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~--~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRG--EGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhh--cCCCccEEEeeCCCcc
Confidence            899999999998 66765432211  1123334556666544

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.71  E-value=3.7e-17  Score=162.92  Aligned_cols=134  Identities=19%  Similarity=0.316  Sum_probs=110.2

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeeccc--------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      +.||+|++|.||+|.. .|..|+||+.....        ......+.+|++++..++|++|.....++...        .
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~--------~   72 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDP--------E   72 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeC--------C
Confidence            5789999999999987 57788999765321        11224578899999999999988777666542        2


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++++|.+++...      .+ .+..++.+++.+|.++|+   .+++|||++|.|||++ ++.++|+|||.+
T Consensus        73 ~~~lv~e~~~G~~L~~~~~~~------~~-~~~~i~~~i~~~l~~lH~---~~i~H~Dl~p~Nil~~-~~~~~liDf~~a  141 (211)
T PRK14879         73 NFIIVMEYIEGEPLKDLINSN------GM-EELELSREIGRLVGKLHS---AGIIHGDLTTSNMILS-GGKIYLIDFGLA  141 (211)
T ss_pred             CCEEEEEEeCCcCHHHHHHhc------cH-HHHHHHHHHHHHHHHHHh---CCcccCCCCcccEEEE-CCCEEEEECCcc
Confidence            568999999999999988642      22 788999999999999999   8899999999999999 788999999998


Q ss_pred             cc
Q 044236          598 II  599 (747)
Q Consensus       598 ~~  599 (747)
                      +.
T Consensus       142 ~~  143 (211)
T PRK14879        142 EF  143 (211)
T ss_pred             cC
Confidence            54

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=5.3e-17  Score=185.23  Aligned_cols=202  Identities=30%  Similarity=0.350  Sum_probs=98.5

Q ss_pred             CCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCcccc-----------------CCCCCCEEEcccCCCC
Q 044236           93 LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGIS-----------------RLVRLQTLTMDTNFFD  155 (747)
Q Consensus        93 l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~-----------------~l~~L~~L~L~~N~~~  155 (747)
                      +++|++|+|++|+|+. +|..   .++|+.|+|++|.++. +|..+.                 .+++|+.|+|++|.++
T Consensus       241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~-Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA  315 (788)
T ss_pred             CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh-hhhchhhcCEEECcCCccccccccccccceeECCCCccc
Confidence            4566777777776653 4432   2345555555554432 222110                 1234555555555554


Q ss_pred             CCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCC
Q 044236          156 DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG  235 (747)
Q Consensus       156 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~  235 (747)
                      + +|...   .+|+.|++++|+|++ +|..   ..+|+.|+|++|+|++. |.+  ..+|..|++++|+|+. +|..+.+
T Consensus       316 ~-Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P~l--p~~L~~L~Ls~N~L~~-LP~l~~~  383 (788)
T PRK15387        316 S-LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-PTL--PSELYKLWAYNNRLTS-LPALPSG  383 (788)
T ss_pred             c-CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccCCC-CCC--Ccccceehhhcccccc-Ccccccc
Confidence            4 22211   223334444444432 2221   13566666766666642 321  2345555555555553 4444455


Q ss_pred             cceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccc
Q 044236          236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKR  315 (747)
Q Consensus       236 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~  315 (747)
                      |..|++++|.|++ +|..+   ++|+.|++++|+|+++|. .   ..+|+.|++++|+|+ .+|..+..++.|      .
T Consensus       384 L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L------~  448 (788)
T PRK15387        384 LKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSE------T  448 (788)
T ss_pred             cceEEecCCcccC-CCCcc---cCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCccc-ccChHHhhccCC------C
Confidence            6666666666664 34322   356666666666665432 1   234566666666665 556554433322      2


Q ss_pred             eeeeccccCCC
Q 044236          316 VVKFGGNCLSY  326 (747)
Q Consensus       316 ~~~~~~n~~~~  326 (747)
                      .+.+++|.+++
T Consensus       449 ~LdLs~N~Ls~  459 (788)
T PRK15387        449 TVNLEGNPLSE  459 (788)
T ss_pred             eEECCCCCCCc
Confidence            34455555543

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.71  E-value=8.8e-18  Score=169.83  Aligned_cols=238  Identities=16%  Similarity=0.188  Sum_probs=144.0

Q ss_pred             CccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCC-----------CCcceeeeeeec
Q 044236          443 DSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQH-----------PHLVSLLGHCIE  507 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H-----------~nIv~l~g~~~~  507 (747)
                      ...+.||.|+|+.||.++. .+|+.+|||+.....   ....+++++|.-....+.+           +-++.+ +...-
T Consensus        15 ~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~-d~~~i   93 (288)
T PF14531_consen   15 VRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPL-DLLRI   93 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---S-EEEEE
T ss_pred             EEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeee-EEEEE
Confidence            3457899999999999995 569999999986433   3345677777655544332           222222 22221


Q ss_pred             cCCCCC----CCCc-----eEEEEEeccCCCCcccccc---cCCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccC
Q 044236          508 SGSQDD----SNTN-----KVFLVYEYIPNGSYRAHLS---ENCP-ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSN  574 (747)
Q Consensus       508 ~~~~~~----~~~~-----~~~lv~Ey~~~gsL~~~l~---~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHr  574 (747)
                      .+.+..    ....     ..+++|+-+. +||.+++.   .... ...+....++.+..|+++.+++||+   .++||+
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~---~GlVHg  169 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHS---YGLVHG  169 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEEES
T ss_pred             cCCCcceecCCCCccceeehhhhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhh---cceEec
Confidence            110000    0011     2367888774 48877653   2111 1234556678888999999999999   899999


Q ss_pred             CCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec--------cCCCcCCcee
Q 044236          575 RLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--------QRTKLEDDVY  646 (747)
Q Consensus       575 Dlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------~~~s~k~DVw  646 (747)
                      ||||+|++++.+|.++|+||+......+.... ..              ....+.+||....        -.++.+.|.|
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~-~~--------------~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW  234 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC-SE--------------FPVAFTPPELESCAGQFGQNNAPYTFATDAW  234 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEETTEEEEG-GG--------------S-TTTS-HHHHHHHTSCHHSEEEE-HHHHHH
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeecCceeec-cC--------------CCcccCChhhhhhhcccCcccceeeeccCHH
Confidence            99999999999999999999876443322211 00              0122334443322        2478889999


Q ss_pred             ehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCC
Q 044236          647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR  717 (747)
Q Consensus       647 SfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R  717 (747)
                      ++|+++|.|..|..|++........                +.....|. +.++.+..|+...++.+|.+|
T Consensus       235 ~LG~~ly~lWC~~lPf~~~~~~~~~----------------~~~f~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  235 QLGITLYSLWCGRLPFGLSSPEADP----------------EWDFSRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HHHHHHHHHHHSS-STCCCGGGSTS----------------GGGGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             HHHHHHHHHHHccCCCCCCCccccc----------------cccchhcC-CcCHHHHHHHHHHccCCcccC
Confidence            9999999999999999854322110                00223455 666779999999999999988

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2.8e-19  Score=159.80  Aligned_cols=163  Identities=30%  Similarity=0.525  Sum_probs=144.4

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+.++++.+.|.|++|+++ .+|+.+..|.+|+.|++++|++. .+|..++.|++|+.|+++.|++. .+|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3567778888999999995 57778999999999999999984 78999999999999999999986 589999999999


Q ss_pred             CEEEccCCcCCC-CCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCc
Q 044236          169 TVLSLKSNQLKG-QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFS  247 (747)
Q Consensus       169 ~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~  247 (747)
                      +.|||..|++.. .+|..|..++.|+-|++++|.+.-.+|++++|++|+.|.++.|.+-                     
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll---------------------  163 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL---------------------  163 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh---------------------
Confidence            999999999874 5788999999999999999999888888999999999999888764                     


Q ss_pred             ccCchhhcCCcccCeeecccCcCcccCCc
Q 044236          248 GAIPQQFGELAQLQHLDLSFNDLSGIPPS  276 (747)
Q Consensus       248 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  276 (747)
                       .+|..++.+++|+.|.+.+|+++-+||+
T Consensus       164 -~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccceeeecChh
Confidence             4789999999999999999999888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.71  E-value=9.2e-19  Score=176.09  Aligned_cols=221  Identities=23%  Similarity=0.227  Sum_probs=132.0

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEccc-CCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSS-NFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN  167 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~  167 (747)
                      +|+.+.+|+.|||++|+|+-+-|++|.+|.+|..|-+.+ |+|+......|++|..|+.|.+.-|++.-...+.|..|++
T Consensus        86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~  165 (498)
T KOG4237|consen   86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS  165 (498)
T ss_pred             hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence            455555555555555555555555555555555444433 5555444445555555555555555555555555555555


Q ss_pred             CCEEEccCCcCCCCCchhhcCCccCcEEecccCcccc------------CCC-CCCCCCcCCEEEccCC-----------
Q 044236          168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG------------KLP-DMSALTSLHVLDLREN-----------  223 (747)
Q Consensus       168 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~------------~~p-~~~~l~~L~~L~L~~N-----------  223 (747)
                      |..|.+..|.+...--.+|..+..++.+.+..|.+.-            ..| +++...-..-..+.++           
T Consensus       166 l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~  245 (498)
T KOG4237|consen  166 LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL  245 (498)
T ss_pred             cchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh
Confidence            5555555555553222355555555555555444210            000 0111111111111110           


Q ss_pred             --------------CCCCCCCC----CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccc
Q 044236          224 --------------KLDSGLPL----MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS  285 (747)
Q Consensus       224 --------------~l~~~~~~----~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  285 (747)
                                    ...+.-|.    ..++|.+|+|++|.++++-+.+|..+.+++.|.|..|+|...-..+|.++..|+
T Consensus       246 c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~  325 (498)
T KOG4237|consen  246 CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK  325 (498)
T ss_pred             hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence                          01111111    135788999999999999999999999999999999999988888999999999


Q ss_pred             eeecccccCccccCcCCCCCCCCC
Q 044236          286 YLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       286 ~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      .|+|++|+|+..-|..|..+..|.
T Consensus       326 tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  326 TLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             eeeecCCeeEEEecccccccceee
Confidence            999999999988787776555443

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=6.3e-17  Score=162.88  Aligned_cols=209  Identities=18%  Similarity=0.200  Sum_probs=134.2

Q ss_pred             CCCCcceeeeeeeccC-------------------CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHH
Q 044236          494 QHPHLVSLLGHCIESG-------------------SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI  554 (747)
Q Consensus       494 ~H~nIv~l~g~~~~~~-------------------~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~  554 (747)
                      +|||||++.++|+++-                   ++.-+....+|+||.-++. +|+.++..+    ..+...+.-|..
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~----~~s~r~~~~~la  348 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTR----HRSYRTGRVILA  348 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcC----CCchHHHHHHHH
Confidence            6999999999987532                   1111335678999998866 899988753    245566777889


Q ss_pred             HHHHHHHHhhcCCCCCcccCCCCCCceee--cCCC--cEEEecccccccccccchhcccCCCCCcccccceeeecCCcce
Q 044236          555 GVAKAVHFLHSSVISGSFSNRLTTNNILL--DEHR--IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENV  630 (747)
Q Consensus       555 ~ia~gL~yLH~~~~~~ivHrDlk~~NILl--d~~~--~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (747)
                      |+.+|+.|||.   .+|.|||+|++|||+  |+|.  ...|+|||.+--.+...- ..     ...--+....+...-||
T Consensus       349 QlLEav~hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGl-ql-----py~S~~Vd~GGNa~lmA  419 (598)
T KOG4158|consen  349 QLLEAVTHLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGL-QL-----PYESDEVDLGGNAKLMA  419 (598)
T ss_pred             HHHHHHHHHHH---ccchhhcccccceEEEecCCCCcEEEEcccceeeecccccc-cc-----ccccccccCCCcceecc
Confidence            99999999999   899999999999999  4444  578999998632221100 00     00000111223344556


Q ss_pred             eeeeeccC------CCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHH
Q 044236          631 VIVVDIQR------TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVS  704 (747)
Q Consensus       631 ~e~~~~~~------~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  704 (747)
                      ||+.....      --.|+|.|+.|-+.||+++...||.......+.. ..+      .+.--|.++..+++.    +.+
T Consensus       420 PEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~-r~Y------qe~qLPalp~~vpp~----~rq  488 (598)
T KOG4158|consen  420 PEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDT-RTY------QESQLPALPSRVPPV----ARQ  488 (598)
T ss_pred             hhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheech-hhh------hhhhCCCCcccCChH----HHH
Confidence            66543221      1248999999999999999988876533222211 111      111123333444444    677


Q ss_pred             HHhHccCCCCCCCCCHHHHHHHH
Q 044236          705 ITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       705 l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ++...++.||++||+..-....|
T Consensus       489 lV~~lL~r~pskRvsp~iAANvl  511 (598)
T KOG4158|consen  489 LVFDLLKRDPSKRVSPNIAANVL  511 (598)
T ss_pred             HHHHHhcCCccccCCccHHHhHH
Confidence            77788889999999876555444

>PLN03210 Resistant to P

Probab=99.69  E-value=5.2e-16  Score=190.49  Aligned_cols=224  Identities=25%  Similarity=0.301  Sum_probs=124.1

Q ss_pred             CCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCC
Q 044236           74 NQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF  153 (747)
Q Consensus        74 ~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  153 (747)
                      .++|+.+..+..+| .++.+++|+.|+|++|.....+|..+++|++|+.|+|++|...+.+|..+ ++++|+.|+|++|.
T Consensus       638 ~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        638 NIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             EEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            34444444444454 35666666666666665555666666666666666666655445555544 55666666666554


Q ss_pred             CCCCCcccccCCCCCCEEEccCCcCCCCCchhh------------------------------cCCccCcEEecccCccc
Q 044236          154 FDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSI------------------------------CRIATLTDIAMSNNELS  203 (747)
Q Consensus       154 ~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~------------------------------~~l~~L~~L~l~~N~l~  203 (747)
                      ..+.+|..   ..+|+.|++++|.+. .+|..+                              ...++|+.|++++|...
T Consensus       716 ~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l  791 (1153)
T PLN03210        716 RLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL  791 (1153)
T ss_pred             Cccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence            43333321   234555555555543 233221                              01235566666666555


Q ss_pred             cCCC-CCCCCCcCCEEEccCCCCCCCCCCC--CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCC
Q 044236          204 GKLP-DMSALTSLHVLDLRENKLDSGLPLM--PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS  280 (747)
Q Consensus       204 ~~~p-~~~~l~~L~~L~L~~N~l~~~~~~~--~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  280 (747)
                      +.+| .++++++|+.|++++|...+.+|..  +++|+.|++++|.....+|..   .++|+.|+|++|.|+.+| ..+..
T Consensus       792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP-~si~~  867 (1153)
T PLN03210        792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVP-WWIEK  867 (1153)
T ss_pred             cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCccCh-HHHhc
Confidence            5555 3667777777777766544444432  456677777766554444433   245667777777776543 34666


Q ss_pred             CCccceeecccc-cCccccCcCCCCCCCC
Q 044236          281 LPNISYLHLASN-MLSGTLPKDLSCGSKL  308 (747)
Q Consensus       281 l~~L~~L~l~~N-~l~g~ip~~~~~~~~l  308 (747)
                      +++|+.|+|+++ ++. .+|.....++.|
T Consensus       868 l~~L~~L~L~~C~~L~-~l~~~~~~L~~L  895 (1153)
T PLN03210        868 FSNLSFLDMNGCNNLQ-RVSLNISKLKHL  895 (1153)
T ss_pred             CCCCCEEECCCCCCcC-ccCcccccccCC
Confidence            777777777663 343 355544433333

syringae 6; Provisional

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.69  E-value=1e-16  Score=181.80  Aligned_cols=138  Identities=17%  Similarity=0.249  Sum_probs=108.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEe-ecc-c------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSL-TFL-K------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l-~~~-~------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      ...|...+.||+|+||.||+|.+.... +++|+. ... .      ....+.+.+|++++++++|++|+..+.++...  
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~--  408 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDP--  408 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeC--
Confidence            344566789999999999999875443 344432 211 1      11235688999999999999998887776652  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  590 (747)
                            ...++||||+++++|.+++.           ....++.+++++|.|||+   .+|+||||||+|||+ .++.++
T Consensus       409 ------~~~~lv~E~~~g~~L~~~l~-----------~~~~~~~~i~~~L~~lH~---~giiHrDlkp~NILl-~~~~~~  467 (535)
T PRK09605        409 ------EEKTIVMEYIGGKDLKDVLE-----------GNPELVRKVGEIVAKLHK---AGIVHGDLTTSNFIV-RDDRLY  467 (535)
T ss_pred             ------CCCEEEEEecCCCcHHHHHH-----------HHHHHHHHHHHHHHHHHh---CCCccCCCChHHEEE-ECCcEE
Confidence                  24689999999999988764           346789999999999999   899999999999999 578899


Q ss_pred             Eecccccccc
Q 044236          591 LSDYGISIIM  600 (747)
Q Consensus       591 l~DFGla~~~  600 (747)
                      |+|||+++..
T Consensus       468 liDFGla~~~  477 (535)
T PRK09605        468 LIDFGLGKYS  477 (535)
T ss_pred             EEeCcccccC
Confidence            9999999653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.69  E-value=1.6e-19  Score=181.69  Aligned_cols=215  Identities=30%  Similarity=0.411  Sum_probs=176.1

Q ss_pred             CCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccc
Q 044236           83 IDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWW  162 (747)
Q Consensus        83 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~  162 (747)
                      ..++|++++.+..++.|+.++|++ ..+|++++.+.+|..|+.++|.+. .+|++++.+..|+.|+..+|+++. .|+.+
T Consensus        80 l~~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~  156 (565)
T KOG0472|consen   80 LSQLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDM  156 (565)
T ss_pred             hhhCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHH
Confidence            346778888899999999999988 468888999999999999999875 677788888899999998888875 67788


Q ss_pred             cCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC--CCCcceee
Q 044236          163 DSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM--PKGLVTVL  240 (747)
Q Consensus       163 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~--~~~L~~L~  240 (747)
                      .++.+|..|++.+|.+....|..+. ++.|+.||...|-+...+|+++.+.+|..|+|..|++.. +|.+  ...|.+|.
T Consensus       157 ~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~L~Elh  234 (565)
T KOG0472|consen  157 VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-LPEFPGCSLLKELH  234 (565)
T ss_pred             HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-CCCCCccHHHHHHH
Confidence            8889999999999999865555554 899999999999998888889999999999999999863 4443  34588899


Q ss_pred             cCCCcCcccCchhhc-CCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCC
Q 044236          241 LSRNLFSGAIPQQFG-ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCG  305 (747)
Q Consensus       241 ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~  305 (747)
                      ++.|.|. .+|.... ++.+|.+|||..|+++..|.+ +.-+.+|..||+++|.++ .+|.+++++
T Consensus       235 ~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  235 VGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             hcccHHH-hhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCccc-cCCcccccc
Confidence            9999888 5666665 899999999999999887765 567888999999999998 456665544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.69  E-value=2.4e-19  Score=180.38  Aligned_cols=205  Identities=28%  Similarity=0.420  Sum_probs=184.3

Q ss_pred             CCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCccc
Q 044236           82 SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDW  161 (747)
Q Consensus        82 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~  161 (747)
                      .+..+|..+..+.+|+.|+.++|.+ ..+|++|+.+..|..|+..+|+++ ..|+++.++.+|..|++.+|.+....|+.
T Consensus       102 ~ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~  179 (565)
T KOG0472|consen  102 KLSELPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENH  179 (565)
T ss_pred             hHhhccHHHhhhhhhhhhhccccce-eecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHH
Confidence            3457899999999999999999998 568899999999999999999985 78889999999999999999999877777


Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC----CCCCcc
Q 044236          162 WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL----MPKGLV  237 (747)
Q Consensus       162 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~----~~~~L~  237 (747)
                      +. ++.|+.||..+|-+. .+|..++.+.+|..|++..|.+. .+|+|.++..|..|+++.|++.- +|.    ...++.
T Consensus       180 i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~  255 (565)
T KOG0472|consen  180 IA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLL  255 (565)
T ss_pred             HH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHh-hHHHHhcccccce
Confidence            76 999999999999886 79999999999999999999998 56799999999999999998863 232    245788


Q ss_pred             eeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          238 TVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       238 ~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      .|||..|+++ .+|..+.-+.+|++||+|+|.|++.|++ ++++ .|+.|-+.+|.+.
T Consensus       256 vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  256 VLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             eeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhcCCchH
Confidence            9999999999 6899999999999999999999999886 7999 9999999999885

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.68  E-value=8.8e-17  Score=158.57  Aligned_cols=130  Identities=20%  Similarity=0.317  Sum_probs=103.6

Q ss_pred             cccCCCCeeEEEEEeCCCcEEEEEEeeccc--------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          447 FMGEGSRGKLYKGRLENGTYVAIRSLTFLK--------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .||+|+||.||+|.+ +|..|++|+.....        ......+.+|++++..++|+++.....++...        ..
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~--------~~   71 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDP--------DN   71 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--------CC
Confidence            489999999999995 56789999865321        11235677899999999988765554444432        24


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++++|.+++...   . .      .++.+++++|.++|+   .+++|||+||.||+++ ++.+++.|||+++
T Consensus        72 ~~lv~e~~~g~~l~~~~~~~---~-~------~~~~~i~~~l~~lH~---~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~  137 (199)
T TIGR03724        72 KTIVMEYIEGKPLKDVIEEG---N-D------ELLREIGRLVGKLHK---AGIVHGDLTTSNIIVR-DDKLYLIDFGLGK  137 (199)
T ss_pred             CEEEEEEECCccHHHHHhhc---H-H------HHHHHHHHHHHHHHH---CCeecCCCCcceEEEE-CCcEEEEECCCCc
Confidence            68999999999999887542   1 0      789999999999999   8999999999999999 8899999999985


Q ss_pred             c
Q 044236          599 I  599 (747)
Q Consensus       599 ~  599 (747)
                      .
T Consensus       138 ~  138 (199)
T TIGR03724       138 Y  138 (199)
T ss_pred             C
Confidence            4

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=3.5e-16  Score=178.56  Aligned_cols=196  Identities=26%  Similarity=0.340  Sum_probs=118.6

Q ss_pred             CCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCC
Q 044236           76 TLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFD  155 (747)
Q Consensus        76 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~  155 (747)
                      +++.+ .+.++|..+.  .+|+.|+|.+|+|+. +|.   .+++|++|+|++|+|+. +|..   .++|+.|+|++|.++
T Consensus       207 dLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        207 NVGES-GLTTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             EcCCC-CCCcCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh
Confidence            34444 4557887775  489999999999964 675   35889999999999974 5643   356778888888776


Q ss_pred             CCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCC-----------------CCcCCEE
Q 044236          156 DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA-----------------LTSLHVL  218 (747)
Q Consensus       156 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-----------------l~~L~~L  218 (747)
                      . +|..+   .+|+.|++++|+++. +|..   +++|+.|++++|+|++..+....                 ..+|+.|
T Consensus       276 ~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~L  347 (788)
T PRK15387        276 H-LPALP---SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQEL  347 (788)
T ss_pred             h-hhhch---hhcCEEECcCCcccc-cccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceE
Confidence            4 34322   445566666666653 3432   24566666666666542111100                 1245566


Q ss_pred             EccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCcccc
Q 044236          219 DLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTL  298 (747)
Q Consensus       219 ~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~i  298 (747)
                      +|++|+|++ +|..+.+|..|++++|.|++ +|..   ..+|+.|+|++|+|+++++.    .++|+.|++++|+|+ .+
T Consensus       348 dLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~Ls-sI  417 (788)
T PRK15387        348 SVSDNQLAS-LPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLT-SL  417 (788)
T ss_pred             ecCCCccCC-CCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCC-CC
Confidence            666666553 44445556666666666653 4432   23566677777777664432    246667777777776 35


Q ss_pred             Cc
Q 044236          299 PK  300 (747)
Q Consensus       299 p~  300 (747)
                      |.
T Consensus       418 P~  419 (788)
T PRK15387        418 PM  419 (788)
T ss_pred             Cc
Confidence            54

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=2.6e-16  Score=180.50  Aligned_cols=198  Identities=20%  Similarity=0.264  Sum_probs=147.4

Q ss_pred             HHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC---CCCcceeeeeeeccCCCC
Q 044236          436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ---HPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       436 ~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~---H~nIv~l~g~~~~~~~~~  512 (747)
                      ...-..|.+.+.||+|+||+||+|...+|+.||+|+=+...   .-+|.--.+++.+|+   -+-|+.+..++..     
T Consensus       694 ~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~---~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~-----  765 (974)
T KOG1166|consen  694 EVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPN---PWEFYICLQVMERLKPQMLPSIMHISSAHVF-----  765 (974)
T ss_pred             eecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCC---ceeeeehHHHHHhhchhhhcchHHHHHHHcc-----
Confidence            34455688889999999999999997779999999865322   122333344555555   2234445444433     


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec-------C
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD-------E  585 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-------~  585 (747)
                         .+.-+||+||.+.|+|.+++..   .+.++|...+.++.|+++-+..||.   .+|||+||||+|.||.       .
T Consensus       766 ---~~~S~lv~ey~~~Gtlld~~N~---~~~m~e~lv~~~~~qml~ive~lH~---~~IIHgDiKPDNfll~~~~~~~~~  836 (974)
T KOG1166|consen  766 ---QNASVLVSEYSPYGTLLDLINT---NKVMDEYLVMFFSCQMLRIVEHLHA---MGIIHGDIKPDNFLLRREICADSD  836 (974)
T ss_pred             ---CCcceeeeeccccccHHHhhcc---CCCCCchhhhHHHHHHHHHHHHHHh---cceecccCCcceeEeecccCCCCc
Confidence               2356899999999999999984   5679999999999999999999999   8999999999999994       2


Q ss_pred             CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCC
Q 044236          586 HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI  660 (747)
Q Consensus       586 ~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~  660 (747)
                      ...++|+|||.+-.|.--..         + ..+...+.+.....+|...+..++.+.|-|.+.-+++-|+.|+.
T Consensus       837 ~~~l~lIDfG~siDm~lfp~---------~-~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  837 SKGLYLIDFGRSIDMKLFPD---------G-TKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             ccceEEEecccceeeeEcCC---------C-cEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            34689999999855431110         0 01112344555666777888899999999999999999999864

>PLN03210 Resistant to P

Probab=99.65  E-value=2.1e-15  Score=185.25  Aligned_cols=210  Identities=21%  Similarity=0.301  Sum_probs=113.9

Q ss_pred             CCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccc
Q 044236           83 IDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWW  162 (747)
Q Consensus        83 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~  162 (747)
                      +..+|..+ .+.+|+.|+|.+|.+. .+|..+..+++|+.|+|++|...+.+|. ++.+++|+.|+|++|.....+|..+
T Consensus       601 l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si  677 (1153)
T PLN03210        601 LRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI  677 (1153)
T ss_pred             CCCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh
Confidence            34444444 3455555555555542 3455555555555555555444344443 4555555555555554444455555


Q ss_pred             cCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCC------------
Q 044236          163 DSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLP------------  230 (747)
Q Consensus       163 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~------------  230 (747)
                      +++++|+.|++++|..-+.+|..+ ++++|+.|++++|.....+|.+  ..+|+.|+|++|.+.. +|            
T Consensus       678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~  753 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDELI  753 (1153)
T ss_pred             hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-cccccccccccccc
Confidence            555555555555544333444433 4455555555554433333322  2334444444444321 11            


Q ss_pred             ---------------------CCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeec
Q 044236          231 ---------------------LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHL  289 (747)
Q Consensus       231 ---------------------~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  289 (747)
                                           ..+++|+.|+|++|...+.+|.+|+++++|+.|+|++|..-+.+|..+ ++++|+.|+|
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L  832 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL  832 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence                                 123567888888888777888888888888888888864333334333 5777777777


Q ss_pred             ccccCccccCc
Q 044236          290 ASNMLSGTLPK  300 (747)
Q Consensus       290 ~~N~l~g~ip~  300 (747)
                      ++|..-..+|.
T Consensus       833 s~c~~L~~~p~  843 (1153)
T PLN03210        833 SGCSRLRTFPD  843 (1153)
T ss_pred             CCCCccccccc
Confidence            77654444443

syringae 6; Provisional

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.7e-17  Score=170.54  Aligned_cols=179  Identities=21%  Similarity=0.287  Sum_probs=131.0

Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      .++|.|++|...+|.+||.+++.....+|...+.++.|++.|+.|      ++.+|||+||.||....+..+||.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhhhe
Confidence            589999999999999999877667778899999999999999999      45699999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~~~~~  676 (747)
                      ..+....+..      .....-....++..||.||.+.+..|+.|+||||+|+||+|+++- ...+.     ....+   
T Consensus       404 ts~~~~~~~~------~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e-----r~~t~---  469 (516)
T KOG1033|consen  404 TSQDKDETVA------PAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE-----RIATL---  469 (516)
T ss_pred             eecccCCccc------chhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH-----HHHhh---
Confidence            6655433110      011111223567789999999999999999999999999999871 11111     11111   


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV  723 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev  723 (747)
                        .+-....++|....+++.+     ..++.+.+.+.|.+||++.++
T Consensus       470 --~d~r~g~ip~~~~~d~p~e-----~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  470 --TDIRDGIIPPEFLQDYPEE-----YTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             --hhhhcCCCChHHhhcCcHH-----HHHHHHhcCCCcccCchHHHH
Confidence              1111223333444444444     567788999999999954443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=2.9e-18  Score=153.37  Aligned_cols=165  Identities=30%  Similarity=0.484  Sum_probs=126.2

Q ss_pred             cCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcE
Q 044236          115 HRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTD  194 (747)
Q Consensus       115 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  194 (747)
                      -++++.+.|-||+|.++ .+|+.+..|.+|+.|++.+|++.. +|..++.|++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            35677888888888875 566678888888888888888764 6777888888888888888776 57777777777777


Q ss_pred             EecccCcccc-CCC-CCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcc
Q 044236          195 IAMSNNELSG-KLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG  272 (747)
Q Consensus       195 L~l~~N~l~~-~~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  272 (747)
                      ||+.+|+++. .+| .|..++.|+.|.                     |+.|.|. .+|..++.+++|+.|.+..|.+-.
T Consensus       107 ldltynnl~e~~lpgnff~m~tlraly---------------------l~dndfe-~lp~dvg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALY---------------------LGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHH---------------------hcCCCcc-cCChhhhhhcceeEEeeccCchhh
Confidence            7777777763 234 244444444444                     4555554 689999999999999999999988


Q ss_pred             cCCcccCCCCccceeecccccCccccCcCCCCCC
Q 044236          273 IPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS  306 (747)
Q Consensus       273 ~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~  306 (747)
                      .|.+ ++.+..|++|++++|+++ .+|++++.+.
T Consensus       165 lpke-ig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  165 LPKE-IGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             CcHH-HHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            7654 799999999999999998 7777766543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.63  E-value=1.8e-17  Score=166.96  Aligned_cols=265  Identities=19%  Similarity=0.203  Sum_probs=199.7

Q ss_pred             CCcccccCCccceEeCCC-----------cEEEEecCCCCCCC-CCCCCC-CCCCCCCCCCCccCCCcccccccCCCCCC
Q 044236           31 DLCNLTSTAHVSITCQDN-----------SVTGLKIMGDKPVK-ENTAYN-GHPIPNQTLSESFSIDSFVTTLTRLTTLR   97 (747)
Q Consensus        31 ~~c~~~~~~~~~v~c~~~-----------~v~~l~l~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~l~~L~   97 (747)
                      .+|..+..+...|.|+..           ..|.|.|..+.... .++.+. ...+..++|+.|....--|.+|..|.+|.
T Consensus        39 ~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~  118 (498)
T KOG4237|consen   39 APCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL  118 (498)
T ss_pred             CCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence            456665433446888643           34556665544311 111221 12344568888776555678999999998


Q ss_pred             EEEeec-cCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           98 VLSLVS-LGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        98 ~L~L~~-n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      .|-+-+ |+|+...-+.|++|..|+.|.+.-|++.-.....|..|++|..|.|..|.+.......|..+.+++.+.+..|
T Consensus       119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            887766 9997766678999999999999999999999999999999999999999998765569999999999999999


Q ss_pred             cCC------------CCCchhhcCCccCcEEecccCc-------------------------cccCCCC--CCCCCcCCE
Q 044236          177 QLK------------GQFPSSICRIATLTDIAMSNNE-------------------------LSGKLPD--MSALTSLHV  217 (747)
Q Consensus       177 ~l~------------~~~p~~~~~l~~L~~L~l~~N~-------------------------l~~~~p~--~~~l~~L~~  217 (747)
                      .+-            ...|..+++.....-..+.+++                         .-+.-|.  |..|++|+.
T Consensus       199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~  278 (498)
T KOG4237|consen  199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK  278 (498)
T ss_pred             ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence            832            2233344433333222222222                         2223332  788999999


Q ss_pred             EEccCCCCCCCCCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccC
Q 044236          218 LDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML  294 (747)
Q Consensus       218 L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  294 (747)
                      |+|++|++++.-+..   ...+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|.+|..+.+|.+|+|-.|.+
T Consensus       279 lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  279 LNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             eccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            999999998765544   35689999999999988788999999999999999999999999999999999999999987


Q ss_pred             c
Q 044236          295 S  295 (747)
Q Consensus       295 ~  295 (747)
                      .
T Consensus       359 ~  359 (498)
T KOG4237|consen  359 N  359 (498)
T ss_pred             c
Confidence            5

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=2.5e-15  Score=172.19  Aligned_cols=156  Identities=24%  Similarity=0.437  Sum_probs=121.1

Q ss_pred             ChhHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccCCccceEeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 044236            2 QTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESF   81 (747)
Q Consensus         2 ~~~~~~~l~~~k~~~~~~~~l~~w~~~~~~~c~~~~~~~~~v~c~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~   81 (747)
                      .++|++||++||+++.++.. .+|+   +|+|......|.||.|.....+                              
T Consensus       370 ~~~~~~aL~~~k~~~~~~~~-~~W~---g~~C~p~~~~w~Gv~C~~~~~~------------------------------  415 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLPLR-FGWN---GDPCVPQQHPWSGADCQFDSTK------------------------------  415 (623)
T ss_pred             CchHHHHHHHHHHhcCCccc-CCCC---CCCCCCcccccccceeeccCCC------------------------------
Confidence            35789999999999976643 3784   5788432234668999521000                              


Q ss_pred             CCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCccc
Q 044236           82 SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDW  161 (747)
Q Consensus        82 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~  161 (747)
                                ....++.|+|++|++.|.+|..|++|++|+.|+|++|.+.|.+|..++.+++|+.|+|++|.+++.+|+.
T Consensus       416 ----------~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        416 ----------GKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             ----------CceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence                      0113567788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhhcCC-ccCcEEecccCc
Q 044236          162 WDSLSNLTVLSLKSNQLKGQFPSSICRI-ATLTDIAMSNNE  201 (747)
Q Consensus       162 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L~l~~N~  201 (747)
                      +++|++|+.|+|++|+++|.+|..++.+ .++..+++.+|.
T Consensus       486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999999999999999999999887653 344445555443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.62  E-value=2.4e-16  Score=176.99  Aligned_cols=218  Identities=21%  Similarity=0.253  Sum_probs=144.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ..+|+.+++|..|+||.||..+.+ ..+.+|.| ++.++.           ++     +||..+-|              
T Consensus        82 e~df~~IklisngAygavylvrh~~trqrfa~k-iNkq~l-----------il-----Rnilt~a~--------------  130 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYGAVYLVRHKETRQRFAMK-INKQNL-----------IL-----RNILTFAG--------------  130 (1205)
T ss_pred             ccccceeEeeccCCCCceeeeeccccccchhhc-ccccch-----------hh-----hccccccC--------------
Confidence            468999999999999999999854 46778873 332111           11     23444332              


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..+.|      ||-.+.+..-   +.++.        +++.+++|||+   .+|+|||+||+|.||..-|++|+.|||++
T Consensus       131 npfvv------gDc~tllk~~---g~lPv--------dmvla~Eylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLs  190 (1205)
T KOG0606|consen  131 NPFVV------GDCATLLKNI---GPLPV--------DMVLAVEYLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLS  190 (1205)
T ss_pred             Cccee------chhhhhcccC---CCCcc--------hhhHHhHhhcc---CCeecCCCCCCcceeeecccccccchhhh
Confidence            12333      4555555431   22332        23789999999   99999999999999999999999999998


Q ss_pred             ccccccchhcccC---CCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCC-hhhhHHHH
Q 044236          598 IIMEEHEKLEAKG---EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG-EAFLLNEM  673 (747)
Q Consensus       598 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~-~~~~~~~~  673 (747)
                      +..-.........   ......+.....|+++.|.+||++..+.|...+|+|++|+|+||.+.|..||..+ ..+.+..+
T Consensus       191 k~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~v  270 (1205)
T KOG0606|consen  191 KKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQV  270 (1205)
T ss_pred             hhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhh
Confidence            7532221111100   0111122233468899999999999999999999999999999999998777654 44444443


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP  718 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  718 (747)
                      +.... .+          .+..+....++.+++.+.++.+|..|-
T Consensus       271 isd~i-~w----------pE~dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  271 ISDDI-EW----------PEEDEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             hhhhc-cc----------cccCcCCCHHHHHHHHHHHHhChHhhc
Confidence            33210 00          111112223377888888999999984

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.61  E-value=2.2e-15  Score=146.95  Aligned_cols=137  Identities=18%  Similarity=0.208  Sum_probs=95.9

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchh--cHHH----------------------HHHHHHHHhcCCCCC--c
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKY--SIQN----------------------LKVRLDFLSKLQHPH--L  498 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~--~~~~----------------------~~~E~~~l~~l~H~n--I  498 (747)
                      .+.||+|+||.||+|...+|+.||||+++.....  ....                      ...|.+.+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            4679999999999999778999999998743211  0011                      124455555554332  3


Q ss_pred             ceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccc-cccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCC
Q 044236          499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH-LSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLT  577 (747)
Q Consensus       499 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~-l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk  577 (747)
                      .+.+++            ...++||||++++.+... +...    ... .....++.+++.++.++|..  .+|+|||||
T Consensus        82 ~~~~~~------------~~~~lv~e~~~g~~~~~~~l~~~----~~~-~~~~~~~~~~~~~l~~lh~~--~~ivH~Dl~  142 (187)
T cd05119          82 PKPIDL------------NRHVLVMEFIGGDGIPAPRLKDV----RLL-EDPEELYDQILELMRKLYRE--AGLVHGDLS  142 (187)
T ss_pred             CceEec------------CCCEEEEEEeCCCCccChhhhhh----hhc-ccHHHHHHHHHHHHHHHhhc--cCcCcCCCC
Confidence            333322            135899999999665322 2111    011 45678999999999999974  578999999


Q ss_pred             CCceeecCCCcEEEeccccccccc
Q 044236          578 TNNILLDEHRIAKLSDYGISIIME  601 (747)
Q Consensus       578 ~~NILld~~~~~kl~DFGla~~~~  601 (747)
                      |+||+++ ++.++++|||.+....
T Consensus       143 p~Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119         143 EYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             hhhEEEE-CCcEEEEECccccccc
Confidence            9999999 8999999999996543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.60  E-value=6.2e-15  Score=138.12  Aligned_cols=135  Identities=16%  Similarity=0.169  Sum_probs=111.5

Q ss_pred             ccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCC--CCcceeeeeeeccCCCCCCCCceEEE
Q 044236          444 SLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH--PHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H--~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      +.+.||+|.++.||++...+ ..++||.......  ...+.+|+.+++.++|  .++.++++++...        +..++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~--------~~~~~   70 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESD--------GWSYL   70 (155)
T ss_pred             cceecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCC--------CccEE
Confidence            35679999999999999754 6789998864332  4678899999999976  5888888776542        36899


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      +|||++++.+..+          ++.....++.+++++++++|.....+++|+|+||+||+++..+.+++.|||.++.
T Consensus        71 v~e~~~g~~~~~~----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          71 LMEWIEGETLDEV----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             EEEecCCeecccC----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            9999998777654          4566778899999999999985545799999999999999989999999999864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.56  E-value=2.5e-14  Score=144.26  Aligned_cols=138  Identities=17%  Similarity=0.176  Sum_probs=104.9

Q ss_pred             cccc-CCCCeeEEEEEeCCCcEEEEEEeeccc-------------hhcHHHHHHHHHHHhcCCCCCc--ceeeeeeeccC
Q 044236          446 SFMG-EGSRGKLYKGRLENGTYVAIRSLTFLK-------------KYSIQNLKVRLDFLSKLQHPHL--VSLLGHCIESG  509 (747)
Q Consensus       446 ~~iG-~G~~g~Vy~~~~~~g~~vAvK~l~~~~-------------~~~~~~~~~E~~~l~~l~H~nI--v~l~g~~~~~~  509 (747)
                      ..|| .|+.|+||+++.. +..++||.+....             ......+.+|++++.+++|++|  ++.++++....
T Consensus        37 ~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            5687 8999999999875 6678898875311             1223467889999999998885  67777654321


Q ss_pred             CCCCCCCceEEEEEeccCC-CCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          510 SQDDSNTNKVFLVYEYIPN-GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                          ......++||||+++ .+|.+++...    .++..    .+.+++.++.+||+   .+|+||||||.|||++.++.
T Consensus       116 ----~~~~~~~lV~e~l~G~~~L~~~l~~~----~l~~~----~~~~i~~~l~~lH~---~GI~HrDlkp~NILv~~~~~  180 (239)
T PRK01723        116 ----GLFYRADILIERIEGARDLVALLQEA----PLSEE----QWQAIGQLIARFHD---AGVYHADLNAHNILLDPDGK  180 (239)
T ss_pred             ----CcceeeeEEEEecCCCCCHHHHHhcC----CCCHH----HHHHHHHHHHHHHH---CCCCCCCCCchhEEEcCCCC
Confidence                001234699999997 6888887542    34433    35789999999999   89999999999999999899


Q ss_pred             EEEeccccccc
Q 044236          589 AKLSDYGISII  599 (747)
Q Consensus       589 ~kl~DFGla~~  599 (747)
                      ++|+|||.++.
T Consensus       181 v~LIDfg~~~~  191 (239)
T PRK01723        181 FWLIDFDRGEL  191 (239)
T ss_pred             EEEEECCCccc
Confidence            99999999865

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.54  E-value=1.1e-15  Score=162.72  Aligned_cols=212  Identities=25%  Similarity=0.259  Sum_probs=129.0

Q ss_pred             ccccccCCCCCCEEEeeccCCCC------CCChhccCCCCCCEEEcccCCCCCCCCccccCCCC---CCEEEcccCCCCC
Q 044236           86 FVTTLTRLTTLRVLSLVSLGIWG------PLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVR---LQTLTMDTNFFDD  156 (747)
Q Consensus        86 ~~~~l~~l~~L~~L~L~~n~i~~------~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~~~~  156 (747)
                      ++..+...++|+.|+++.+.+.+      .++..+..+++|+.|+|++|.+.+..+..+..+.+   |++|++++|.+++
T Consensus        43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence            44456666667777777766642      23445666777777777777776656665555555   7777777777663


Q ss_pred             ----CCcccccCC-CCCCEEEccCCcCCCC----CchhhcCCccCcEEecccCccccC----C-CCCCCCCcCCEEEccC
Q 044236          157 ----NVPDWWDSL-SNLTVLSLKSNQLKGQ----FPSSICRIATLTDIAMSNNELSGK----L-PDMSALTSLHVLDLRE  222 (747)
Q Consensus       157 ----~~p~~~~~l-~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~-p~~~~l~~L~~L~L~~  222 (747)
                          .+...+..+ ++|+.|++++|.+++.    ++..+..+.+|+.|++++|.+++.    + +.+..+++|+.|++++
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  202 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN  202 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence                223344555 6777777777777642    233455566777777777777642    1 1233445777777777


Q ss_pred             CCCCCCC-------CCCCCCcceeecCCCcCcccCchhhc-----CCcccCeeecccCcCcc----cCCcccCCCCccce
Q 044236          223 NKLDSGL-------PLMPKGLVTVLLSRNLFSGAIPQQFG-----ELAQLQHLDLSFNDLSG----IPPSVLFSLPNISY  286 (747)
Q Consensus       223 N~l~~~~-------~~~~~~L~~L~ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~  286 (747)
                      |.+++..       ....++|+.|++++|.+++.....+.     ..+.|+.|++++|.++.    .....+..+++|++
T Consensus       203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~  282 (319)
T cd00116         203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE  282 (319)
T ss_pred             CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence            7765321       11235677777777777653322222     13677778888777762    22234455577778


Q ss_pred             eecccccCccc
Q 044236          287 LHLASNMLSGT  297 (747)
Q Consensus       287 L~l~~N~l~g~  297 (747)
                      +++++|.++..
T Consensus       283 l~l~~N~l~~~  293 (319)
T cd00116         283 LDLRGNKFGEE  293 (319)
T ss_pred             EECCCCCCcHH
Confidence            88888777633

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.53  E-value=9.5e-16  Score=163.14  Aligned_cols=207  Identities=23%  Similarity=0.261  Sum_probs=116.2

Q ss_pred             cccCCCCCCEEEeeccCCCCC----CChhccCCCCCCEEEcccCCCCC------CCCccccCCCCCCEEEcccCCCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGP----LPDKIHRLSSLELLDMSSNFLFG------AIPSGISRLVRLQTLTMDTNFFDDNV  158 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~----~p~~~~~L~~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~~~~~~  158 (747)
                      .+..+.+|+.|+++++.+...    ++..+...++|+.|++++|.+.+      .++..+..+++|+.|+|++|.+.+..
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            345555566777766666332    44455566667777776666542      23345556666777777776666555


Q ss_pred             cccccCCCC---CCEEEccCCcCCC----CCchhhcCC-ccCcEEecccCccccCCC-----CCCCCCcCCEEEccCCCC
Q 044236          159 PDWWDSLSN---LTVLSLKSNQLKG----QFPSSICRI-ATLTDIAMSNNELSGKLP-----DMSALTSLHVLDLRENKL  225 (747)
Q Consensus       159 p~~~~~l~~---L~~L~l~~N~l~~----~~p~~~~~l-~~L~~L~l~~N~l~~~~p-----~~~~l~~L~~L~L~~N~l  225 (747)
                      +..+..+.+   |+.|++++|++++    .+...+..+ ++|+.|++++|.+++...     .+..+++|+.|++++|.+
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            555544444   7777777766652    222344455 666777777776663211     134455666777777666


Q ss_pred             CCC----CCC---CCCCcceeecCCCcCccc----CchhhcCCcccCeeecccCcCcccCCcccC-----CCCccceeec
Q 044236          226 DSG----LPL---MPKGLVTVLLSRNLFSGA----IPQQFGELAQLQHLDLSFNDLSGIPPSVLF-----SLPNISYLHL  289 (747)
Q Consensus       226 ~~~----~~~---~~~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~L~~L~l  289 (747)
                      ++.    ++.   ...+|+.|++++|.+++.    ++..+..+++|+.|++++|.+++.....+.     ..+.|+.|++
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence            531    111   123566677777666533    233445566677777777666642221111     2356667777


Q ss_pred             ccccCc
Q 044236          290 ASNMLS  295 (747)
Q Consensus       290 ~~N~l~  295 (747)
                      ++|.++
T Consensus       258 ~~n~i~  263 (319)
T cd00116         258 SCNDIT  263 (319)
T ss_pred             cCCCCC
Confidence            776665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=6.5e-15  Score=166.28  Aligned_cols=255  Identities=16%  Similarity=0.194  Sum_probs=178.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe--CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL--ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~--~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..|.+.+.||+|+|+.|-....  .....+|+|.+....  .........|..+-..+. |+|++++++...+.      
T Consensus        20 ~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~------   93 (601)
T KOG0590|consen   20 SQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSP------   93 (601)
T ss_pred             ccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCC------
Confidence            4567778899999999988874  335567777665432  223344555777777776 99999999877663      


Q ss_pred             CCceEEEEEeccCCCCccccc-ccCCCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCCcccCCCCCCceeecCCC-cEEE
Q 044236          515 NTNKVFLVYEYIPNGSYRAHL-SENCPENVLKWSDRLAILIGVAKAVHFLH-SSVISGSFSNRLTTNNILLDEHR-IAKL  591 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l-~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~~~~ivHrDlk~~NILld~~~-~~kl  591 (747)
                        ...++++||..+|+++..+ +..  ....+......++.|+..|+.|+| .   .++.|||+||+|.+++..+ ..|+
T Consensus        94 --~~~~~~~~~s~g~~~f~~i~~~~--~~~~~~~~~~~~~~ql~s~l~~~H~~---~~~~h~~ikP~n~~l~~s~~~l~~  166 (601)
T KOG0590|consen   94 --RSYLLSLSYSDGGSLFSKISHPD--STGTSSSSASRYLPQLNSGLSYLHPE---NGVTHRDIKPSNSLLDESGSALKI  166 (601)
T ss_pred             --cccccccCcccccccccccccCC--ccCCCCcchhhhhhhhccCccccCcc---cccccCCCCCccchhccCCCcccC
Confidence              4789999999999999988 432  113555667788999999999999 6   7889999999999999999 9999


Q ss_pred             ecccccccccc-cchhcccCCCCCcccccceeee-cCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          592 SDYGISIIMEE-HEKLEAKGEGPKARYGFLFICR-TSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       592 ~DFGla~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      +|||+|..... .....          .....++ ..+|+|||..... ......|+||.|+++.-+++|..|++.....
T Consensus       167 ~df~~At~~~~~~g~~~----------~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~  236 (601)
T KOG0590|consen  167 ADFGLATAYRNKNGAER----------SLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRK  236 (601)
T ss_pred             CCchhhccccccCCcce----------eeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccc
Confidence            99999965543 11111          1112345 6788899988774 4467889999999999999999998743322


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ... ...+....   .....    ...........++..+++..+|..|.+.+++..
T Consensus       237 ~~~-~~~~~~~~---~~~~~----~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~  285 (601)
T KOG0590|consen  237 DGR-YSSWKSNK---GRFTQ----LPWNSISDQAHDLLHKILKENPSNRLSIEELKL  285 (601)
T ss_pred             ccc-ceeecccc---ccccc----CccccCChhhhhcccccccCCchhccccccccc
Confidence            110 00010000   00000    111222333677788899999999999888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.50  E-value=1.1e-15  Score=169.13  Aligned_cols=193  Identities=31%  Similarity=0.470  Sum_probs=120.2

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK  174 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~  174 (747)
                      +|++++++.|++++ +|+.++.+.+|+.|+.++|+| ..+|..+..+++|+.|.+.+|.+.. +|.....++.|+.|+|.
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeeh
Confidence            56666666666643 456666666666666666665 3555555556666666666665543 44455555666666666


Q ss_pred             CCcCCCCCchhh--------------------------cCCccCcEEecccCcccc-CCCCCCCCCcCCEEEccCCCCCC
Q 044236          175 SNQLKGQFPSSI--------------------------CRIATLTDIAMSNNELSG-KLPDMSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       175 ~N~l~~~~p~~~--------------------------~~l~~L~~L~l~~N~l~~-~~p~~~~l~~L~~L~L~~N~l~~  227 (747)
                      .|+|.. +|+.+                          ..+..|+.|++.+|.|+. .+|.+-+..+|++|+|++|+|..
T Consensus       319 ~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  319 SNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            665542 22211                          123345666777777764 35666777778888888887753


Q ss_pred             CCCC----CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          228 GLPL----MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       228 ~~~~----~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                       +|.    ....|++|+||+|.++ .+|..+.++..|++|...+|+|...|  .+..++.|+.+|++.|+|+
T Consensus       398 -fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  398 -FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             -CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhh
Confidence             232    1345667777887777 46677777777777777777777666  4567777777777777775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.49  E-value=1.8e-15  Score=167.51  Aligned_cols=181  Identities=30%  Similarity=0.401  Sum_probs=143.2

Q ss_pred             CCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEec
Q 044236          118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAM  197 (747)
Q Consensus       118 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l  197 (747)
                      ++|+.|+.++|.++...+.  .--.+|++++++.|++++ +|+|++.+.+|+.|+..+|+|+ .+|..+..+++|+.|.+
T Consensus       219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA  294 (1081)
T ss_pred             cchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence            3455555555555422221  112478999999999986 5699999999999999999995 78888889999999999


Q ss_pred             ccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC---------------------C-------CCCcceeecCCCcCccc
Q 044236          198 SNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL---------------------M-------PKGLVTVLLSRNLFSGA  249 (747)
Q Consensus       198 ~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~---------------------~-------~~~L~~L~ls~N~l~~~  249 (747)
                      .+|.++...|....+++|++|||..|+|....+.                     .       ...|+.|.+.+|.++..
T Consensus       295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence            9999987777778899999999999988542111                     0       12367788999999887


Q ss_pred             CchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCC
Q 044236          250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS  303 (747)
Q Consensus       250 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~  303 (747)
                      .-+.+.+..+|+.|+|++|+|...|...+.+++.|+.|+|++|+|+ .+|.++.
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva  427 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA  427 (1081)
T ss_pred             chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence            7777888899999999999999999999999999999999999997 6776554

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.46  E-value=3e-13  Score=148.30  Aligned_cols=142  Identities=20%  Similarity=0.183  Sum_probs=99.4

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeeccchhc----------------------------------------HHHHHH
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS----------------------------------------IQNLKV  485 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~----------------------------------------~~~~~~  485 (747)
                      +.||.|++|+||+|++++|+.||||+.+..-...                                        .-+|.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            6799999999999999999999999985321000                                        012444


Q ss_pred             HHHHHhcC----CCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHH-HH
Q 044236          486 RLDFLSKL----QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK-AV  560 (747)
Q Consensus       486 E~~~l~~l----~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~-gL  560 (747)
                      |...+.++    +|.+-|.+-.+|.+.       ....+|||||++|++|.++.....  ...   .+..++..+++ .+
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~-------~~~~vLvmE~i~G~~L~~~~~~~~--~~~---~~~~ia~~~~~~~l  270 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDR-------TSERVLTMEWIDGIPLSDIAALDE--AGL---DRKALAENLARSFL  270 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhh-------cCCceEEEEeECCcccccHHHHHh--cCC---CHHHHHHHHHHHHH
Confidence            55555444    333334443344321       124689999999999998764321  112   23456666665 46


Q ss_pred             HHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccc
Q 044236          561 HFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE  602 (747)
Q Consensus       561 ~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  602 (747)
                      ..+|.   .+++|+|+||.||+++.++.+++.|||++..+..
T Consensus       271 ~ql~~---~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       271 NQVLR---DGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHHh---CCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            78887   7899999999999999999999999999977654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=3e-12  Score=146.94  Aligned_cols=92  Identities=34%  Similarity=0.619  Sum_probs=66.7

Q ss_pred             cCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCc
Q 044236          191 TLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFND  269 (747)
Q Consensus       191 ~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  269 (747)
                      .++.|+|++|.++|.+|. +..+++|+.|+|++|.|.                     |.+|..++.+++|+.|+|++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~---------------------g~iP~~~~~l~~L~~LdLs~N~  477 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR---------------------GNIPPSLGSITSLEVLDLSYNS  477 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc---------------------CcCChHHhCCCCCCEEECCCCC
Confidence            367788888888887774 677777777777766654                     4566667777777777777777


Q ss_pred             CcccCCcccCCCCccceeecccccCccccCcCCC
Q 044236          270 LSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS  303 (747)
Q Consensus       270 l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~  303 (747)
                      |++.+|..++++++|+.|+|++|+++|.+|..+.
T Consensus       478 lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             CCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence            7777777777777777777777777777776654

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.29  E-value=2.2e-12  Score=127.71  Aligned_cols=209  Identities=18%  Similarity=0.225  Sum_probs=129.0

Q ss_pred             HHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 044236          489 FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSV  567 (747)
Q Consensus       489 ~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~  567 (747)
                      -|-.+.|.|||++..|+.+...   .......++.|||+.|++..+|++-. ....+......+++.||..||.|||+. 
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~---~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-  195 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKY---EEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-  195 (458)
T ss_pred             HHHHHHHHHHHHHHHhhccccc---ccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-
Confidence            3455679999999998876431   12457789999999999999997531 234566666788999999999999975 


Q ss_pred             CCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceee
Q 044236          568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYN  647 (747)
Q Consensus       568 ~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwS  647 (747)
                      .++|+|+++..+-|.+..++-+|+.--.-...-............  ...      +...+.+++.-.....+..+|||+
T Consensus       196 ~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~--~~~------~~~g~~a~~sg~~tn~~~a~dIy~  267 (458)
T KOG1266|consen  196 DPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKS--VNT------SLPGFSAPESGTTTNTTGASDIYK  267 (458)
T ss_pred             CCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhh--ccc------cCCccccCCcCcccccccchhhhh
Confidence            479999999999999999998887532211100000000000000  000      011122222222345567899999


Q ss_pred             hhHHHHHHhhCCCCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          648 FGFILLESLVGPIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       648 fGvvl~Elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ||...+||..+..-...++... ..+-.... ....   -++            .=++++..|++..|..||+|++.+.
T Consensus       268 fgmcAlemailEiq~tnseS~~~~ee~ia~~-i~~l---en~------------lqr~~i~kcl~~eP~~rp~ar~llf  330 (458)
T KOG1266|consen  268 FGMCALEMAILEIQSTNSESKVEVEENIANV-IIGL---ENG------------LQRGSITKCLEGEPNGRPDARLLLF  330 (458)
T ss_pred             hhHHHHHHHHheeccCCCcceeehhhhhhhh-eeec---cCc------------cccCcCcccccCCCCCCcchhhhhc
Confidence            9999999998854322222111 11100000 0000   000            0134567899999999999999875

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.28  E-value=1e-11  Score=137.56  Aligned_cols=147  Identities=16%  Similarity=0.128  Sum_probs=91.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCC-CcEEEEEEeeccchh----------------------------------cHHH-
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLKKY----------------------------------SIQN-  482 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vAvK~l~~~~~~----------------------------------~~~~-  482 (747)
                      ..+|+. +.||+|++|+||+|++++ |+.||||+++..-..                                  -.+. 
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            345766 789999999999999877 999999998632100                                  0111 


Q ss_pred             -----HHHHHHHHhcC----CCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccc--cccCCC-CCCCCHHHHH
Q 044236          483 -----LKVRLDFLSKL----QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH--LSENCP-ENVLKWSDRL  550 (747)
Q Consensus       483 -----~~~E~~~l~~l----~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~--l~~~~~-~~~l~~~~~~  550 (747)
                           +.+|...+.++    .+.+.|.+-.++.+-       ....+|||||++|+.+.++  +...+. ...+......
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~-------st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~  270 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWDY-------CSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVE  270 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeeccc-------CCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHH
Confidence                 23333333333    233333333333221       2356899999999999774  222110 0012222222


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC----cEEEeccccccccccc
Q 044236          551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR----IAKLSDYGISIIMEEH  603 (747)
Q Consensus       551 ~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----~~kl~DFGla~~~~~~  603 (747)
                      .++.|+.       .   .+++|+|+||.||+++.++    .+++.|||++..+...
T Consensus       271 ~~~~Qif-------~---~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        271 VFFTQVF-------R---DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             HHHHHHH-------h---CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHH
Confidence            3333332       3   6899999999999999888    9999999998766543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=1.1e-13  Score=145.88  Aligned_cols=192  Identities=28%  Similarity=0.358  Sum_probs=113.1

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK  174 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~  174 (747)
                      --...||+.|++ ..+|..+..+..|+.|.|+.|.+ ..+|..+++|..|++|||+.|+++- +|..+..|+ |+.|-++
T Consensus        76 dt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRF-SELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhcccccc-ccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEe
Confidence            334445555655 34555555555666666666654 3555556666666666666666543 444444433 5556666


Q ss_pred             CCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCC-CCcceeecCCCcCcccCchh
Q 044236          175 SNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQ  253 (747)
Q Consensus       175 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~-~~L~~L~ls~N~l~~~~p~~  253 (747)
                      +|+++ .+|..++.+..|..|+.+.|.+...++.++.+.+|+.|.++.|++....+... -.|..||+|.|+++ .+|-.
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecchh
Confidence            66655 45555555556666666666665555555666666666666665543222211 23566777777776 58999


Q ss_pred             hcCCcccCeeecccCcCcccCCccc--CCCCccceeecccc
Q 044236          254 FGELAQLQHLDLSFNDLSGIPPSVL--FSLPNISYLHLASN  292 (747)
Q Consensus       254 ~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~L~~L~l~~N  292 (747)
                      |.+|+.|++|.|.+|-|...|..+.  +...-.++|+..-.
T Consensus       230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            9999999999999999987665432  22233445555444

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.24  E-value=2.5e-11  Score=116.22  Aligned_cols=130  Identities=20%  Similarity=0.115  Sum_probs=94.9

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcc-eeeeeeeccCCCCCCCCceEEEEE
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV-SLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv-~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ++.++.|.++.||+++.. +..+++|....... ....+.+|..+++.+.+.+++ +++++...          ..++||
T Consensus         3 ~~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~----------~~~lv~   70 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFDPE----------TGVLIT   70 (170)
T ss_pred             eeecCCcccCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEeCC----------CCeEEE
Confidence            356899999999999875 67899998753321 223567899999988765554 34433211          247999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV--ISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      ||+++.++... .       .   ....++.+++++|+.||+..  ...++|+|++|.||+++ ++.+++.|||.+.
T Consensus        71 e~i~G~~l~~~-~-------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          71 EFIEGSELLTE-D-------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             EecCCCccccc-c-------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            99999887653 0       0   11245678999999999843  12369999999999999 6789999999974

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=5.6e-12  Score=138.28  Aligned_cols=199  Identities=31%  Similarity=0.422  Sum_probs=130.9

Q ss_pred             EEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCC-CCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           98 VLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLV-RLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        98 ~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      .|++..|.+.. .+..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+.. +|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            46666666532 2334455566777777777764 4555555553 77777777777653 4456677777777777777


Q ss_pred             cCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC--CCCCcceeecCCCcCcccCchhh
Q 044236          177 QLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL--MPKGLVTVLLSRNLFSGAIPQQF  254 (747)
Q Consensus       177 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~--~~~~L~~L~ls~N~l~~~~p~~~  254 (747)
                      +++ .+|...+.+++|+.|++++|.++...+.+..+..|+.|.+++|++...+..  ...++..+.+.+|.+.. ++..+
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~  251 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESI  251 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchh
Confidence            776 455555566777777777777764443344455577777777743222211  12445556666776653 36778


Q ss_pred             cCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCC
Q 044236          255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS  303 (747)
Q Consensus       255 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~  303 (747)
                      +.+++|+.|++++|.++.+..  +..+.+|+.|++++|.+...+|....
T Consensus       252 ~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence            888889999999999988876  78889999999999998877766543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=9.1e-13  Score=139.10  Aligned_cols=174  Identities=28%  Similarity=0.435  Sum_probs=151.8

Q ss_pred             cCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcE
Q 044236          115 HRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTD  194 (747)
Q Consensus       115 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  194 (747)
                      ..|.--...||+.|++ ..+|..++.+..|+.|.|..|.+. .+|..+.++..|++|||+.|+++ .+|..++.|+ |+.
T Consensus        72 ~~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             ccccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            4677778899999997 589999999999999999999986 48999999999999999999998 6888888875 899


Q ss_pred             EecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC--CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcc
Q 044236          195 IAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM--PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG  272 (747)
Q Consensus       195 L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~--~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  272 (747)
                      |-+++|+++...++++.+..|..||.+.|.+....+..  ..+|..|++..|++. .+|..+..|+ |..||+|.|+++.
T Consensus       148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~  225 (722)
T KOG0532|consen  148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISY  225 (722)
T ss_pred             EEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceee
Confidence            99999999977778998999999999999987544432  356788899999998 4777788775 9999999999988


Q ss_pred             cCCcccCCCCccceeecccccCc
Q 044236          273 IPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       273 ~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      +|- .|.+|..|++|.|.+|.|.
T Consensus       226 iPv-~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  226 LPV-DFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             cch-hhhhhhhheeeeeccCCCC
Confidence            765 4899999999999999997

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=3.3e-11  Score=130.04  Aligned_cols=251  Identities=17%  Similarity=0.158  Sum_probs=163.9

Q ss_pred             CCCccccccC--CCCeeEEEEEe---CCCcEEEEEEeec--cchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCC
Q 044236          441 NFDSLSFMGE--GSRGKLYKGRL---ENGTYVAIRSLTF--LKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       441 ~f~~~~~iG~--G~~g~Vy~~~~---~~g~~vAvK~l~~--~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~  512 (747)
                      .|.+...+|.  |.+|.||.+..   .++..+|+|+-+.  ........-.+|+....+++ |+|.|+.+..+..     
T Consensus       115 ~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~-----  189 (524)
T KOG0601|consen  115 RFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEG-----  189 (524)
T ss_pred             hcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccccc-----
Confidence            4666788999  99999999985   4588899997432  22222233356777777774 9999997766655     


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHH----HHHHhhcCCCCCcccCCCCCCceeecCC-C
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK----AVHFLHSSVISGSFSNRLTTNNILLDEH-R  587 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~----gL~yLH~~~~~~ivHrDlk~~NILld~~-~  587 (747)
                         ....++-+|++. .+|..+.+..  ...++......+..+..+    |+.++|+   .+|+|-|+||.||.+..+ .
T Consensus       190 ---~~~lfiqtE~~~-~sl~~~~~~~--~~~~p~~~l~~~~~~~~~~~~~al~~~hs---~~~~~~~~kp~~i~~~~~~~  260 (524)
T KOG0601|consen  190 ---SGILFIQTELCG-ESLQSYCHTP--CNFLPDNLLWNSLRDWLSRDVTALSHLHS---NNIVHDDLKPANIFTTSDWT  260 (524)
T ss_pred             ---CCcceeeecccc-chhHHhhhcc--cccCCchhhhhHHhhhhhcccccccccCC---Ccccccccchhheecccccc
Confidence               347788899885 6888887653  223555666677777777    9999999   889999999999999988 8


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      ..+++|||+...+.+..-.......    +.   ..+-..|+++|.. ...++.++|+||+|.+..|..++.........
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~----~r---~~~~~~Y~~ke~~-~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~  332 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVS----KR---PEGDCIYAAKELL-NGLATFASDIFSLGEVILEAILGSHLPSVGKN  332 (524)
T ss_pred             eeecCCcceeEEccCCccccceeee----ec---CCCCceEeChhhh-ccccchHhhhcchhhhhHhhHhhcccccCCCC
Confidence            8999999998766544321111000    00   0122345666654 44678899999999999999998443321100


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .  .| ..      .+....+   .++-......+.....++++.+|..|++.+.+..
T Consensus       333 ~--~W-~~------~r~~~ip---~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  333 S--SW-SQ------LRQGYIP---LEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             C--Cc-cc------cccccCc---hhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence            0  00 00      0111111   1111111222444777899999999999886653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=9.1e-12  Score=127.94  Aligned_cols=193  Identities=23%  Similarity=0.286  Sum_probs=123.0

Q ss_pred             CCCcccccccCCCCCCEEEeeccCCCCCCC--hhccCCCCCCEEEcccCCCCCCC--CccccCCCCCCEEEcccCCCCCC
Q 044236           82 SIDSFVTTLTRLTTLRVLSLVSLGIWGPLP--DKIHRLSSLELLDMSSNFLFGAI--PSGISRLVRLQTLTMDTNFFDDN  157 (747)
Q Consensus        82 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p--~~~~~L~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~~~~~  157 (747)
                      .++++..--+++.+|+...|++..+ +..+  .....|++++.||||.|-|..-.  -.....|++|+.|+|+.|++...
T Consensus       109 GfDki~akQsn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  109 GFDKIAAKQSNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             cHHHHHHHhhhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence            4555666678899999999998887 3344  35678999999999999886432  23456789999999999988643


Q ss_pred             Ccccc-cCCCCCCEEEccCCcCCCC-CchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCCCCCC
Q 044236          158 VPDWW-DSLSNLTVLSLKSNQLKGQ-FPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLMPK  234 (747)
Q Consensus       158 ~p~~~-~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~  234 (747)
                      ..... ..++.|+.|.|++|.|+.. +-..+..+++|..|+|..|...+.-. ....+..|+.|||++|++-..-     
T Consensus       188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----  262 (505)
T KOG3207|consen  188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----  262 (505)
T ss_pred             ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----
Confidence            32221 3567888888888888732 22334556788888888885221111 2344667777777777653211     


Q ss_pred             CcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccC-Ccc-----cCCCCccceeecccccCc
Q 044236          235 GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIP-PSV-----LFSLPNISYLHLASNMLS  295 (747)
Q Consensus       235 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~-----l~~l~~L~~L~l~~N~l~  295 (747)
                                     .-...+.++.|+.|+++.+.+..+- |+.     ...+++|++|++..|++.
T Consensus       263 ---------------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  263 ---------------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             ---------------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence                           0123445556666666666655431 111     235566777777777663

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.08  E-value=1.7e-09  Score=104.24  Aligned_cols=135  Identities=15%  Similarity=0.110  Sum_probs=95.3

Q ss_pred             ccccCCCCeeEEEEEeCC-------CcEEEEEEeeccc----------------------hhcHHHHH----HHHHHHhc
Q 044236          446 SFMGEGSRGKLYKGRLEN-------GTYVAIRSLTFLK----------------------KYSIQNLK----VRLDFLSK  492 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~-------g~~vAvK~l~~~~----------------------~~~~~~~~----~E~~~l~~  492 (747)
                      ..||.|-=+.||.|.-.+       +..+|||..+...                      ....+.+.    +|...|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999998542       4799999875210                      01122333    78999988


Q ss_pred             CCC--CCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCccc-ccccCCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 044236          493 LQH--PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA-HLSENCPENVLKWSDRLAILIGVAKAVHFL-HSSVI  568 (747)
Q Consensus       493 l~H--~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~-~l~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~  568 (747)
                      +..  -++.+.+++.            .-+|||||+.++.+.. .+.+    ..++......+..+++.+|.++ |.   
T Consensus        83 l~~~Gv~vP~pi~~~------------~~~lvME~Ig~~~~~~~~Lkd----~~~~~~~~~~i~~~i~~~l~~l~H~---  143 (197)
T cd05146          83 MQKAGIPCPEVVVLK------------KHVLVMSFIGDDQVPAPKLKD----AKLNDEEMKNAYYQVLSMMKQLYKE---  143 (197)
T ss_pred             HHHcCCCCCeEEEec------------CCEEEEEEcCCCCccchhhhc----cccCHHHHHHHHHHHHHHHHHHHHh---
Confidence            853  4555666541            2489999997654432 2221    1244455667789999999999 77   


Q ss_pred             CCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          569 SGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       569 ~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      .+|||+||++.|||++ ++.+.|+|||.+...
T Consensus       144 ~glVHGDLs~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         144 CNLVHADLSEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             CCeecCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence            7899999999999997 467999999988543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=1.8e-10  Score=124.32  Aligned_cols=250  Identities=16%  Similarity=0.157  Sum_probs=164.4

Q ss_pred             HHHhhCCCccccccCCCCeeEEEEEe--CCCcEEEEEEeeccchhcH--HHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          436 KEATNNFDSLSFMGEGSRGKLYKGRL--ENGTYVAIRSLTFLKKYSI--QNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       436 ~~~~~~f~~~~~iG~G~~g~Vy~~~~--~~g~~vAvK~l~~~~~~~~--~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      ...+.+|..+..||.|.|+.||+...  .++..+++|.+...-....  ..-..|+-+...+ .|.++++++..+.+   
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~---  337 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQ---  337 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccc---
Confidence            34567899999999999999999873  4678899988764322111  1123455555544 48888887665544   


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-CcE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIA  589 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~  589 (747)
                           .+..++=-|||+++++...+.-   ...++...++++..|++.++.++|+   +.++|+|+||+||++..+ +..
T Consensus       338 -----~r~~~ip~e~~~~~s~~l~~~~---~~~~d~~~~~~~~~q~~~~l~~i~s---~~~~~~d~~psni~i~~~~~~~  406 (524)
T KOG0601|consen  338 -----LRQGYIPLEFCEGGSSSLRSVT---SQMLDEDPRLRLTAQILTALNVIHS---KLFVHLDVKPSNILISNDGFFS  406 (524)
T ss_pred             -----cccccCchhhhcCcchhhhhHH---HHhcCcchhhhhHHHHHhccccccc---hhhhcccccccceeeccchhhh
Confidence                 2356788999999988765521   3346777888999999999999998   899999999999999876 888


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL  669 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~  669 (747)
                      ++.|||.+..+.-........   .         +..+ .++.......+-.+.|+||||.-+.|.+++.........  
T Consensus       407 ~~~~~~~~t~~~~~~~~~~~~---~---------r~~p-~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~--  471 (524)
T KOG0601|consen  407 KLGDFGCWTRLAFSSGVFHHI---D---------RLYP-IAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQ--  471 (524)
T ss_pred             hccccccccccceeccccccc---c---------cccc-cchhhccccccccccccccccccccccccCcccCccccc--
Confidence            999999985432211111000   0         0000 122333345567799999999999999999543322110  


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                        + .... ..   ..  +    ..+... .+...+++.....++..||.+.+...+.+
T Consensus       472 --~-~~i~-~~---~~--p----~~~~~~-~~~q~~~kv~~~~~~~~~~l~~~l~~~~~  516 (524)
T KOG0601|consen  472 --S-LTIR-SG---DT--P----NLPGLK-LQLQVLLKVMINPDRKRRPSAVELSLHSE  516 (524)
T ss_pred             --c-eeee-cc---cc--c----CCCchH-HhhhhhhhhhcCCccccchhhhhhcccch
Confidence              0 0000 00   00  1    111111 44666778888999999999988876654

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.04  E-value=1.7e-09  Score=108.36  Aligned_cols=145  Identities=18%  Similarity=0.214  Sum_probs=109.3

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCC--CcceeeeeeeccCCCCCCCCceEEEE
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHP--HLVSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~--nIv~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      +.|+.|.++.||+++..+|+.+++|....... .....+.+|.++++.+++.  ++.++++++....     ..+..++|
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~-----~~~~~~~v   78 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPS-----VLGTPFYV   78 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCC-----ccCCceEE
Confidence            56899999999999987778899998764322 1345778999999999763  4566776654321     01246899


Q ss_pred             EeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------
Q 044236          523 YEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV-----------------------------------  567 (747)
Q Consensus       523 ~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----------------------------------  567 (747)
                      |||++++++.+.+..    ..++...+..++.+++++|.+||+..                                   
T Consensus        79 ~e~i~G~~l~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (223)
T cd05154          79 MERVDGRVLRDRLLR----PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEP  154 (223)
T ss_pred             EEEeCCEecCCCCCC----CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhccccc
Confidence            999999888876531    24677778888899999999998621                                   


Q ss_pred             ------------------CCCcccCCCCCCceeecC--CCcEEEeccccccc
Q 044236          568 ------------------ISGSFSNRLTTNNILLDE--HRIAKLSDYGISII  599 (747)
Q Consensus       568 ------------------~~~ivHrDlk~~NILld~--~~~~kl~DFGla~~  599 (747)
                                        ...++|+|+++.||+++.  ++.+.|.||+.+..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         155 PAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                              134699999999999998  66789999998754

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.2e-10  Score=108.09  Aligned_cols=125  Identities=27%  Similarity=0.368  Sum_probs=50.2

Q ss_pred             ccCCCCCCEEEeeccCCCCCCChhcc-CCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccc-cCCCC
Q 044236           90 LTRLTTLRVLSLVSLGIWGPLPDKIH-RLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWW-DSLSN  167 (747)
Q Consensus        90 l~~l~~L~~L~L~~n~i~~~~p~~~~-~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~-~~l~~  167 (747)
                      +.+...++.|+|.+|.|.. + +.++ .|.+|+.||||+|.++.. + .+..+++|+.|+|++|+++.. ++.+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            5566678999999999964 3 3465 688999999999999754 3 588899999999999999864 3344 46899


Q ss_pred             CCEEEccCCcCCCCCc-hhhcCCccCcEEecccCccccCCCC-----CCCCCcCCEEEc
Q 044236          168 LTVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLPD-----MSALTSLHVLDL  220 (747)
Q Consensus       168 L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~-----~~~l~~L~~L~L  220 (747)
                      |+.|++++|+|...-- ..+..+++|+.|+|.+|.++.. +.     +..+++|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            9999999999975322 5667788899999999988754 32     466788888774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=3.2e-10  Score=124.44  Aligned_cols=187  Identities=33%  Similarity=0.438  Sum_probs=157.6

Q ss_pred             cccccCCCCCCEEEeeccCCCCCCChhccCCC-CCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCC
Q 044236           87 VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLS-SLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSL  165 (747)
Q Consensus        87 ~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l  165 (747)
                      ...+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.+.. +|...+.+
T Consensus       109 ~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~  185 (394)
T COG4886         109 ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNL  185 (394)
T ss_pred             chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhh
Confidence            345677789999999999995 5777788885 9999999999985 667789999999999999999986 56666689


Q ss_pred             CCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCC--CCCCCCCCcceeecCC
Q 044236          166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS--GLPLMPKGLVTVLLSR  243 (747)
Q Consensus       166 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~--~~~~~~~~L~~L~ls~  243 (747)
                      ++|+.|++++|+++ .+|..+..+..|+.|.+++|.+...+..+.++.++..|.+.+|++..  .....+..++.|++++
T Consensus       186 ~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         186 SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccc
Confidence            99999999999998 67777777788999999999766566678889999999999999865  3333456799999999


Q ss_pred             CcCcccCchhhcCCcccCeeecccCcCcccCCcccC
Q 044236          244 NLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF  279 (747)
Q Consensus       244 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  279 (747)
                      |.++...+  ++.+.+|+.|++++|.+...++....
T Consensus       265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         265 NQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             cccccccc--ccccCccCEEeccCccccccchhhhc
Confidence            99996444  89999999999999999998887543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1.1e-10  Score=114.25  Aligned_cols=202  Identities=22%  Similarity=0.264  Sum_probs=131.3

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc-CCCCCCCcccccCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT-NFFDDNVPDWWDSLSN  167 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~~~~~~p~~~~~l~~  167 (747)
                      .+.-+.+|+.+.++.+.-. .|-+-...=+.|+++...+..++ ..| .+-.+..+..+.-+. ...+|..-..+...+.
T Consensus       209 ~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~  285 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVP-SLLPETILADPSGSEPSTSNGSALVSADTWQE  285 (490)
T ss_pred             chHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccc-cccchhhhcCccCCCCCccCCceEEecchHhh
Confidence            3444555566655554321 11111122245777776654432 111 122222222222211 1223444445556678


Q ss_pred             CCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCC--CCCCCCCcceeecCCCc
Q 044236          168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG--LPLMPKGLVTVLLSRNL  245 (747)
Q Consensus       168 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~--~~~~~~~L~~L~ls~N~  245 (747)
                      |+.|||++|.|+ .+..+..-++.++.|++|+|.+.. +..+..|.+|+.||||+|.++..  +-....++.+|.|+.|.
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            999999999987 567777778899999999999873 44477888999999999988642  22235678899999998


Q ss_pred             CcccCchhhcCCcccCeeecccCcCcccC-CcccCCCCccceeecccccCccc
Q 044236          246 FSGAIPQQFGELAQLQHLDLSFNDLSGIP-PSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       246 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      |...  ..++.|-+|..||+++|+|.... -..++++|-|+.+.|.+|++.+.
T Consensus       364 iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  364 IETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             Hhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            8632  34677889999999999997643 24578999999999999998754

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.90  E-value=6.2e-09  Score=113.58  Aligned_cols=170  Identities=18%  Similarity=0.225  Sum_probs=117.4

Q ss_pred             EEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccc
Q 044236          458 KGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS  536 (747)
Q Consensus       458 ~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~  536 (747)
                      .|. ..++.+|.|+..+...........+-++.|+.+|||||++++..+...        ...|||+|-+.  -|..++.
T Consensus        30 ~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~--------~~~ylvTErV~--Pl~~~lk   99 (690)
T KOG1243|consen   30 DGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEE--------GTLYLVTERVR--PLETVLK   99 (690)
T ss_pred             ccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhccc--------CceEEEeeccc--cHHHHHH
Confidence            344 567889999988865554445567778899999999999999877663        37899999874  4666665


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcc
Q 044236          537 ENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR  616 (747)
Q Consensus       537 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~  616 (747)
                      +      +......-.+.||+.||.|||+.  .+++|++|.-..|+++..|.-||++|-++........        ...
T Consensus       100 ~------l~~~~v~~Gl~qIl~AL~FL~~d--~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~--------~~~  163 (690)
T KOG1243|consen  100 E------LGKEEVCLGLFQILAALSFLNDD--CNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNA--------PAK  163 (690)
T ss_pred             H------hHHHHHHHHHHHHHHHHHHHhcc--CCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCc--------ccc
Confidence            4      22344555678999999999976  5789999999999999999999999998743322111        000


Q ss_pred             cccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCC
Q 044236          617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP  659 (747)
Q Consensus       617 ~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~  659 (747)
                      +-+....    +..|+....  -+...|.|-|||+++|++.|.
T Consensus       164 ~~~~~~s----~~~P~~~~~--s~~s~D~~~Lg~li~el~ng~  200 (690)
T KOG1243|consen  164 SLYLIES----FDDPEEIDP--SEWSIDSWGLGCLIEELFNGS  200 (690)
T ss_pred             cchhhhc----ccChhhcCc--cccchhhhhHHHHHHHHhCcc
Confidence            0000000    111111111  112359999999999999983

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.89  E-value=6.4e-10  Score=126.08  Aligned_cols=260  Identities=15%  Similarity=0.128  Sum_probs=164.6

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ..++|.+.+-+-+|.++.++-++ -..|...++|......   ....+...++-.++-..+||-+++...-+..      
T Consensus       802 S~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~------  875 (1205)
T KOG0606|consen  802 SPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPC------  875 (1205)
T ss_pred             CCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCC------
Confidence            34567777788899999999887 3345555555543221   1222333333333333456776665433211      


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....+||++|..+|+|...++...   ..+..........+..+++|||.   ..++|||++|.|.|+..++..+++|
T Consensus       876 --rsP~~L~~~~~~~~~~~Skl~~~~---~~saepaRs~i~~~vqs~e~L~s---~~r~h~~~~p~~~l~~~~gh~~l~~  947 (1205)
T KOG0606|consen  876 --RSPLPLVGHYLNGGDLPSKLHNSG---CLSAEPARSPILERVQSLESLHS---SLRKHRDLKPDSLLIAYDGHRPLTD  947 (1205)
T ss_pred             --CCCcchhhHHhccCCchhhhhcCC---CcccccccchhHHHHhhhhcccc---chhhcccccccchhhcccCCcccCc
Confidence              346799999999999999988642   23333344555667789999998   5689999999999999999999999


Q ss_pred             cccccccccc-chhcc-----------------cCCCCC-cccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHH
Q 044236          594 YGISIIMEEH-EKLEA-----------------KGEGPK-ARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE  654 (747)
Q Consensus       594 FGla~~~~~~-~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~E  654 (747)
                      ||......-. .....                 ...-.. .........++..|.+||...+..-...+|+|++|++++|
T Consensus       948 ~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e 1027 (1205)
T KOG0606|consen  948 FGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFE 1027 (1205)
T ss_pred             cccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhh
Confidence            9943221100 00000                 000000 0011223466778899999999988899999999999999


Q ss_pred             HhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH
Q 044236          655 SLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE  721 (747)
Q Consensus       655 lltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  721 (747)
                      .++|..|+.......+.+-+  .    .+.+.    +...+.+....+.+++..-+..+|.+|-.|.
T Consensus      1028 ~l~g~pp~na~tpq~~f~ni--~----~~~~~----~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1028 VLTGIPPFNAETPQQIFENI--L----NRDIP----WPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             hhcCCCCCCCcchhhhhhcc--c----cCCCC----CCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            99999998755433222110  0    00000    1122233344477778888889999997665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.83  E-value=4.3e-10  Score=110.08  Aligned_cols=131  Identities=22%  Similarity=0.333  Sum_probs=77.0

Q ss_pred             ccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCC
Q 044236           90 LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT  169 (747)
Q Consensus        90 l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~  169 (747)
                      +.-...|+.|||+.|.|+ .+.+++.-++.++.|++|+|.+...  ..+..|++|+.|||++|.++. +-.|-..|.|++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence            333445666667666663 3555566666667777777666422  225666666667776666653 344555666666


Q ss_pred             EEEccCCcCCCCCchhhcCCccCcEEecccCccccC--CCCCCCCCcCCEEEccCCCCC
Q 044236          170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK--LPDMSALTSLHVLDLRENKLD  226 (747)
Q Consensus       170 ~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~l~~L~~L~L~~N~l~  226 (747)
                      .|.|+.|.+..  -+.+..|-+|..||+++|++...  ...+++|+.|++|.|.+|.+.
T Consensus       356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            66666666542  23455566666666666666532  223566666666666666554

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.83  E-value=1.8e-08  Score=93.42  Aligned_cols=131  Identities=21%  Similarity=0.300  Sum_probs=92.5

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeecc--------chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFL--------KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--------~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ..+++|+=+.+|.+.+.+ ..+++|.-...        .+-......+|..++.+++--.|..-+=+.++        .+
T Consensus         2 ~~i~~GAEa~i~~~~~~g-~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD--------~~   72 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLG-LPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVD--------PD   72 (204)
T ss_pred             chhhCCcceeEEeeeccC-cceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEc--------CC
Confidence            357899999999998743 34555543211        11123456789999988764443332223333        23


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ...|+|||+++-.|.+++...          +..++..|-+-+.-||.   .+|||+||.++||++..+. +.+.|||++
T Consensus        73 ~~~I~me~I~G~~lkd~l~~~----------~~~~~r~vG~~vg~lH~---~givHGDLTtsNiIl~~~~-i~~IDfGLg  138 (204)
T COG3642          73 NGLIVMEYIEGELLKDALEEA----------RPDLLREVGRLVGKLHK---AGIVHGDLTTSNIILSGGR-IYFIDFGLG  138 (204)
T ss_pred             CCEEEEEEeCChhHHHHHHhc----------chHHHHHHHHHHHHHHh---cCeecCCCccceEEEeCCc-EEEEECCcc
Confidence            568999999998888888642          24566677777788999   8999999999999998765 899999998


Q ss_pred             cc
Q 044236          598 II  599 (747)
Q Consensus       598 ~~  599 (747)
                      ..
T Consensus       139 ~~  140 (204)
T COG3642         139 EF  140 (204)
T ss_pred             cc
Confidence            64

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.81  E-value=2.4e-08  Score=95.98  Aligned_cols=124  Identities=19%  Similarity=0.232  Sum_probs=80.7

Q ss_pred             eEEEEEeCCCcEEEEEEeeccc--------------h------------hcHHHHHHHHHHHhcCCCC--Ccceeeeeee
Q 044236          455 KLYKGRLENGTYVAIRSLTFLK--------------K------------YSIQNLKVRLDFLSKLQHP--HLVSLLGHCI  506 (747)
Q Consensus       455 ~Vy~~~~~~g~~vAvK~l~~~~--------------~------------~~~~~~~~E~~~l~~l~H~--nIv~l~g~~~  506 (747)
                      .||.|...+|..+|||..+...              .            .......+|.+.|.++..-  ++.+.+++- 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            4999998889999999875210              0            0123467899999999765  455666442 


Q ss_pred             ccCCCCCCCCceEEEEEeccC--CCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCcccCCCCCCceee
Q 044236          507 ESGSQDDSNTNKVFLVYEYIP--NGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL-HSSVISGSFSNRLTTNNILL  583 (747)
Q Consensus       507 ~~~~~~~~~~~~~~lv~Ey~~--~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~ivHrDlk~~NILl  583 (747)
                                 .-+|||||++  +..+.. +...    .++......++.++...+..+ |.   .+|||+|+.+.|||+
T Consensus        80 -----------~~~ivME~I~~~G~~~~~-l~~~----~~~~~~~~~~~~~il~~~~~~~~~---~givHGDLs~~NIlv  140 (188)
T PF01163_consen   80 -----------RNVIVMEYIGEDGVPLPR-LKDV----DLSPEEPKELLEEILEEIIKMLHK---AGIVHGDLSEYNILV  140 (188)
T ss_dssp             -----------TTEEEEE--EETTEEGGC-HHHC----GGGGSTHHHHHHHHHHHHHHHHHC---TTEEESS-STTSEEE
T ss_pred             -----------CCEEEEEecCCCccchhh-HHhc----cccchhHHHHHHHHHHHHHHHHHh---cCceecCCChhhEEe
Confidence                       2379999998  544443 3221    112334556777888866665 66   799999999999999


Q ss_pred             cCCCcEEEeccccccc
Q 044236          584 DEHRIAKLSDYGISII  599 (747)
Q Consensus       584 d~~~~~kl~DFGla~~  599 (747)
                      +++ .+.|.|||.+..
T Consensus       141 ~~~-~~~iIDf~qav~  155 (188)
T PF01163_consen  141 DDG-KVYIIDFGQAVD  155 (188)
T ss_dssp             ETT-CEEE--GTTEEE
T ss_pred             ecc-eEEEEecCccee
Confidence            987 899999998744

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.79  E-value=3.6e-09  Score=99.91  Aligned_cols=108  Identities=23%  Similarity=0.353  Sum_probs=39.6

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCcccc-CCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhh-cCCcc
Q 044236          114 IHRLSSLELLDMSSNFLFGAIPSGIS-RLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSI-CRIAT  191 (747)
Q Consensus       114 ~~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~  191 (747)
                      +.+..+++.|+|++|.++..  +.++ .+.+|+.|+|++|.++..  +.+..+++|+.|++++|+++. ++..+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            45666799999999998643  2455 588999999999999864  357789999999999999985 44444 46899


Q ss_pred             CcEEecccCccccC--CCCCCCCCcCCEEEccCCCCC
Q 044236          192 LTDIAMSNNELSGK--LPDMSALTSLHVLDLRENKLD  226 (747)
Q Consensus       192 L~~L~l~~N~l~~~--~p~~~~l~~L~~L~L~~N~l~  226 (747)
                      |+.|++++|++...  +..+..+++|+.|+|.+|.+.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            99999999999753  234567788888888888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=1.3e-09  Score=119.98  Aligned_cols=194  Identities=32%  Similarity=0.307  Sum_probs=81.9

Q ss_pred             CCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEE
Q 044236           93 LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        93 l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      +..++.+++..|.|.. +-..+..+++|+.|+|..|.+..... .+..+++|++|+|++|.++...  .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhhe
Confidence            3444444444444422 22234444555555555555432221 1444455555555555554432  233444455555


Q ss_pred             ccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCC-CCCCcceeecCCCcCcccC
Q 044236          173 LKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAI  250 (747)
Q Consensus       173 l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~-~~~~L~~L~ls~N~l~~~~  250 (747)
                      +++|.++.  ...+..+.+|+.+++++|.+...-+. +..+.+|+.+++.+|.+...-.. ....+..+++..|.++-.-
T Consensus       147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             eccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence            55555442  12233344555555555555432221 34444555555555544321111 1122223344444444221


Q ss_pred             chhhcCCc--ccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          251 PQQFGELA--QLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       251 p~~~~~l~--~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      +  +..+.  .|+.+++++|.+...+ ..+..+.++..|++.+|++.
T Consensus       225 ~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  225 G--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             C--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccc
Confidence            1  11111  2555555555554432 22344455555555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=4.7e-09  Score=81.36  Aligned_cols=59  Identities=32%  Similarity=0.384  Sum_probs=33.5

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCC
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF  153 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  153 (747)
                      +|++|+|++|+|....++.|.++++|++|+|++|.+....|..|.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45556666665554444555556666666666555555555555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=7.6e-09  Score=80.18  Aligned_cols=60  Identities=42%  Similarity=0.679  Sum_probs=54.8

Q ss_pred             CcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccC
Q 044236          235 GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML  294 (747)
Q Consensus       235 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  294 (747)
                      +|++|++++|+|+...+..|..+++|++|+|++|+++.+++..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            567788888888877778999999999999999999999999999999999999999975

...

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.73  E-value=4.4e-08  Score=90.32  Aligned_cols=142  Identities=18%  Similarity=0.246  Sum_probs=96.6

Q ss_pred             ccccccCCCCeeEEEEEeCCCcEEEEEEeecc--------chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          444 SLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL--------KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--------~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .+..+-+|+=+.|+++.+. |+...||.--..        .+-..+...+|.+++.+++--.|.--.=++.+.       
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~-------   82 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDT-------   82 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEec-------
Confidence            5678899999999999985 666666643211        122345678899999887533332222233332       


Q ss_pred             CceEEEEEeccCC-CCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC---cEEE
Q 044236          516 TNKVFLVYEYIPN-GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR---IAKL  591 (747)
Q Consensus       516 ~~~~~lv~Ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl  591 (747)
                       ..-.|+|||+++ -++.+++.........+ ......+..|-+.+.-||.   ..|||+||..+||++..++   .+.+
T Consensus        83 -~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d-~~~~~~~~~iG~~igklH~---ndiiHGDLTTSNill~~~~~~~~~~l  157 (229)
T KOG3087|consen   83 -YGGQIYMEFIDGASTVKDFILSTMEDESED-EGLAELARRIGELIGKLHD---NDIIHGDLTTSNILLRSDGNQITPIL  157 (229)
T ss_pred             -CCCeEEEEeccchhHHHHHHHHHccCcccc-hhHHHHHHHHHHHHHHhhh---CCeecccccccceEEecCCCcCceEE
Confidence             134799999976 47777776543222222 2225677888888999999   7899999999999996544   4689


Q ss_pred             ecccccc
Q 044236          592 SDYGISI  598 (747)
Q Consensus       592 ~DFGla~  598 (747)
                      .|||++.
T Consensus       158 Idfgls~  164 (229)
T KOG3087|consen  158 IDFGLSS  164 (229)
T ss_pred             Eeecchh
Confidence            9999984

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.72  E-value=1.8e-07  Score=99.00  Aligned_cols=172  Identities=19%  Similarity=0.213  Sum_probs=123.9

Q ss_pred             CeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCC-CC
Q 044236          453 RGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN-GS  530 (747)
Q Consensus       453 ~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~-gs  530 (747)
                      -...||+. .-+|..++.|++...+.+.......-+++++++.|.|||+|..++....    .+...+++||+|+++ ++
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~t----F~D~SlvlvYDYyP~s~T  364 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYT----FGDLSLVLVYDYYPSSPT  364 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhc----cCcceEEEEEecCCCCch
Confidence            34679998 4679999999995333322222234577899999999999999887432    224679999999986 56


Q ss_pred             cccccccCC------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          531 YRAHLSENC------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       531 L~~~l~~~~------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      |.++.....            .....++...+.++.|+..||.++|+   .|..-+-|.+++||++.+.+++|+..|...
T Consensus       365 L~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHs---sGLAck~L~~~kIlv~G~~RIriS~C~i~D  441 (655)
T KOG3741|consen  365 LYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHS---SGLACKTLDLKKILVTGKMRIRISGCGIMD  441 (655)
T ss_pred             HHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHh---cCceeecccHhHeEeeCcceEEEeccccee
Confidence            665432211            12236678889999999999999999   677778999999999999999999888775


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI  660 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~  660 (747)
                      ++..+...                          .+..   -.+-|.=.||.+++.|.||..
T Consensus       442 vl~~d~~~--------------------------~le~---~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  442 VLQEDPTE--------------------------PLES---QQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             eecCCCCc--------------------------chhH---HhhhhHHHHHHHHHHHhhccc
Confidence            54432200                          0001   124588899999999999943

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=2.4e-09  Score=110.45  Aligned_cols=192  Identities=24%  Similarity=0.214  Sum_probs=135.9

Q ss_pred             cccCCCCCCEEEeeccCCCCCCC--hhccCCCCCCEEEcccCCCCCCCCccc-cCCCCCCEEEcccCCCCCCC-cccccC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLP--DKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNV-PDWWDS  164 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p--~~~~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~~~~~~-p~~~~~  164 (747)
                      ....|++++.|||+.|-|+.-.|  .....|++|+.|+||.|.+.-...... ..++.|+.|.|+.+.|+-.- -.....
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            56789999999999998865433  345789999999999999864333322 35788999999999987321 122357


Q ss_pred             CCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCC--CCCCCCCcCCEEEccCCCCCCCC-CCCCCCcceeec
Q 044236          165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL--PDMSALTSLHVLDLRENKLDSGL-PLMPKGLVTVLL  241 (747)
Q Consensus       165 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l  241 (747)
                      +++|..|+|..|..-+..-.....+..|+.|+|++|++-...  +..+.|+.|..|+++.+.+...- |.          
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d----------  290 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD----------  290 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC----------
Confidence            899999999999643344445566789999999999987543  45788899999999888775421 11          


Q ss_pred             CCCcCcccCchhhcCCcccCeeecccCcCcccCC-cccCCCCccceeecccccCcc
Q 044236          242 SRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPP-SVLFSLPNISYLHLASNMLSG  296 (747)
Q Consensus       242 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~g  296 (747)
                            +..-.-...+++|++|+++.|++..... ..+..+++|+.|.+..|.|+-
T Consensus       291 ------~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  291 ------VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ------ccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence                  0001112345678888888888855331 234567788888888888763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.71  E-value=1.5e-09  Score=119.40  Aligned_cols=200  Identities=28%  Similarity=0.363  Sum_probs=149.5

Q ss_pred             ccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCC
Q 044236           86 FVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSL  165 (747)
Q Consensus        86 ~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l  165 (747)
                      +-..+..+++|..|++..|.|.+ +...+..+++|++|+||+|.|+...+  +..++.|+.|++++|.+...  ..+..+
T Consensus        87 ~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l  161 (414)
T KOG0531|consen   87 ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESL  161 (414)
T ss_pred             hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccc
Confidence            44458889999999999999965 33337789999999999999975543  66777899999999998763  456679


Q ss_pred             CCCCEEEccCCcCCCCCc-hhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC-CC--Ccceeec
Q 044236          166 SNLTVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM-PK--GLVTVLL  241 (747)
Q Consensus       166 ~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~-~~--~L~~L~l  241 (747)
                      ++|+.+++++|++...-+ . ...+.+|+.+++.+|.+. .+..+..+..+..+++..|.++..-+.. ..  .|..+++
T Consensus       162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l  239 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYL  239 (414)
T ss_pred             hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhc
Confidence            999999999999985444 2 577889999999999886 3333444555566688888876433221 12  2789999


Q ss_pred             CCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          242 SRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       242 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      ++|.+.. ++..+..+..+..|++.+|++.....  +...+.+..+.+..|.+.
T Consensus       240 ~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  240 SGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccCcccc-ccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence            9999984 33567778889999999999876643  345666777777777665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.68  E-value=5e-09  Score=105.36  Aligned_cols=206  Identities=21%  Similarity=0.233  Sum_probs=122.3

Q ss_pred             cccCCCCCCEEEeeccCCCCC----CChh-------ccCCCCCCEEEcccCCCCCCCCcc----ccCCCCCCEEEcccCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGP----LPDK-------IHRLSSLELLDMSSNFLFGAIPSG----ISRLVRLQTLTMDTNF  153 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~----~p~~-------~~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~  153 (747)
                      .+.+.++|+..++++ -++|.    +|+.       +-..+.|++||||.|.|.-.-+..    +..++.|++|.|.+|.
T Consensus        53 ~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen   53 VLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             HHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            455555666666654 22332    3332       334557777777777764433333    3456777777777776


Q ss_pred             CCCCCcc-------------cccCCCCCCEEEccCCcCCCC----CchhhcCCccCcEEecccCcccc--C---CCCCCC
Q 044236          154 FDDNVPD-------------WWDSLSNLTVLSLKSNQLKGQ----FPSSICRIATLTDIAMSNNELSG--K---LPDMSA  211 (747)
Q Consensus       154 ~~~~~p~-------------~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~--~---~p~~~~  211 (747)
                      +...--.             -.++-+.|+++...+|++...    +...|...+.|+.+.++.|.+..  .   ...+..
T Consensus       132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~  211 (382)
T KOG1909|consen  132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH  211 (382)
T ss_pred             CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh
Confidence            5422111             123446788888888877532    22345566778888888887742  1   012567


Q ss_pred             CCcCCEEEccCCCCCCC-------CCCCCCCcceeecCCCcCcccCchhh-----cCCcccCeeecccCcCccc----CC
Q 044236          212 LTSLHVLDLRENKLDSG-------LPLMPKGLVTVLLSRNLFSGAIPQQF-----GELAQLQHLDLSFNDLSGI----PP  275 (747)
Q Consensus       212 l~~L~~L~L~~N~l~~~-------~~~~~~~L~~L~ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~~  275 (747)
                      +++|+.|||+.|-|+..       .-..+++|++|+++++.++..-...|     ...++|++|.|.+|.|+..    ..
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence            78888888888877521       01123467777777777764332222     2357788888888888642    22


Q ss_pred             cccCCCCccceeecccccCc
Q 044236          276 SVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       276 ~~l~~l~~L~~L~l~~N~l~  295 (747)
                      ......+.|..|+|++|++.
T Consensus       292 ~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhcchhhHHhcCCccccc
Confidence            22345778888888888773

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.64  E-value=2.8e-07  Score=94.12  Aligned_cols=144  Identities=12%  Similarity=0.037  Sum_probs=97.3

Q ss_pred             cccCCCCeeEEEEEeCCCcEEEEEEeeccchh-----------cHHHHHHHHHHHhcCCCCCc--ceeeeeeeccCCCCC
Q 044236          447 FMGEGSRGKLYKGRLENGTYVAIRSLTFLKKY-----------SIQNLKVRLDFLSKLQHPHL--VSLLGHCIESGSQDD  513 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~-----------~~~~~~~E~~~l~~l~H~nI--v~l~g~~~~~~~~~~  513 (747)
                      .+-+.....|++..+ +|+.+.||........           ....+.+|...+.++...+|  .+.+++.....   .
T Consensus        29 ~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~---~  104 (268)
T PRK15123         29 VFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGS---N  104 (268)
T ss_pred             EEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecC---C
Confidence            344334445777766 5778999976432211           11247789888887743333  33444443211   1


Q ss_pred             CCCceEEEEEeccCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-------
Q 044236          514 SNTNKVFLVYEYIPNG-SYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-------  585 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-------  585 (747)
                      .....-++|||++++- +|.+++.... ....+...+..++.+++..+.-||.   .+|+|+|++++|||++.       
T Consensus       105 ~~~~~s~LVte~l~~~~sL~~~~~~~~-~~~~~~~~~~~ll~~la~~i~~LH~---~Gi~HgDL~~~NiLl~~~~~~~~~  180 (268)
T PRK15123        105 PATRTSFIITEDLAPTISLEDYCADWA-TNPPDPRLKRMLIKRVATMVRDMHA---AGINHRDCYICHFLLHLPFPGREE  180 (268)
T ss_pred             CccceeEEEEeeCCCCccHHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHH---CcCccCCCChhhEEEeccccCCCC
Confidence            1123568999999875 7888875321 1234456677899999999999999   89999999999999975       


Q ss_pred             CCcEEEecccccc
Q 044236          586 HRIAKLSDYGISI  598 (747)
Q Consensus       586 ~~~~kl~DFGla~  598 (747)
                      ++.+.++||+.++
T Consensus       181 ~~~~~LIDl~r~~  193 (268)
T PRK15123        181 DLKLSVIDLHRAQ  193 (268)
T ss_pred             CceEEEEECCccc
Confidence            4689999999875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.64  E-value=2.9e-08  Score=116.69  Aligned_cols=107  Identities=25%  Similarity=0.357  Sum_probs=70.8

Q ss_pred             ccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCC
Q 044236           90 LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT  169 (747)
Q Consensus        90 l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~  169 (747)
                      |..++.|++|||++|.=.+.+|+++++|-+|++|||++..+. .+|.++.+|..|.+|++..+.....+|..+..|++|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            666777788887776655677777777777888887777765 6777777777777887777765555566666677777


Q ss_pred             EEEccCCc--CCCCCchhhcCCccCcEEec
Q 044236          170 VLSLKSNQ--LKGQFPSSICRIATLTDIAM  197 (747)
Q Consensus       170 ~L~l~~N~--l~~~~p~~~~~l~~L~~L~l  197 (747)
                      +|.+..-.  .+...-..+.++.+|+.+..
T Consensus       646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  646 VLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             EEEeeccccccchhhHHhhhcccchhhhee
Confidence            77765433  22222233344444444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.56  E-value=7.7e-09  Score=104.00  Aligned_cols=183  Identities=17%  Similarity=0.179  Sum_probs=138.9

Q ss_pred             ccccCCCCCCEEEeeccCCCCCCCh----hccCCCCCCEEEcccCCCCCCCC--------------ccccCCCCCCEEEc
Q 044236           88 TTLTRLTTLRVLSLVSLGIWGPLPD----KIHRLSSLELLDMSSNFLFGAIP--------------SGISRLVRLQTLTM  149 (747)
Q Consensus        88 ~~l~~l~~L~~L~L~~n~i~~~~p~----~~~~L~~L~~L~Ls~N~l~~~~p--------------~~~~~l~~L~~L~L  149 (747)
                      ..+-.+++|++|+||.|.|.-.-+.    -+..+++|+.|.|++|.+. ..-              .-...-++|+++..
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            4567778999999999998443333    3467899999999999873 221              22345678999999


Q ss_pred             ccCCCCCCC----cccccCCCCCCEEEccCCcCCCC----CchhhcCCccCcEEecccCccccCCC-----CCCCCCcCC
Q 044236          150 DTNFFDDNV----PDWWDSLSNLTVLSLKSNQLKGQ----FPSSICRIATLTDIAMSNNELSGKLP-----DMSALTSLH  216 (747)
Q Consensus       150 ~~N~~~~~~----p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p-----~~~~l~~L~  216 (747)
                      .+|++....    ...|...+.|+.+.+..|.|...    +-..|..++.|+.|||.+|-|+..-.     .+..+++|+
T Consensus       165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence            999986432    34567889999999999998522    23467899999999999999974321     267788999


Q ss_pred             EEEccCCCCCCC--------CCCCCCCcceeecCCCcCcc----cCchhhcCCcccCeeecccCcCc
Q 044236          217 VLDLRENKLDSG--------LPLMPKGLVTVLLSRNLFSG----AIPQQFGELAQLQHLDLSFNDLS  271 (747)
Q Consensus       217 ~L~L~~N~l~~~--------~~~~~~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~  271 (747)
                      .|+++.+.+...        +-...++|++|.|.+|.|+.    .+...+...+.|..|+|++|.+.
T Consensus       245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            999999988632        11224679999999999974    23455667899999999999994

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.49  E-value=9.8e-07  Score=87.06  Aligned_cols=132  Identities=20%  Similarity=0.166  Sum_probs=91.0

Q ss_pred             CccccccCCCCeeEEEEEeCCCcEEEEEEeecc-------c---------------hhcHHHHHHHHHHHhcCCCC--Cc
Q 044236          443 DSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL-------K---------------KYSIQNLKVRLDFLSKLQHP--HL  498 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~-------~---------------~~~~~~~~~E~~~l~~l~H~--nI  498 (747)
                      .+.++||-|-=+.||.|..+.|..+|||--+..       +               ........+|.++|.+|.-.  .|
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            456789999999999999989999999954311       0               01223557899999998654  56


Q ss_pred             ceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCC
Q 044236          499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTT  578 (747)
Q Consensus       499 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~  578 (747)
                      .+-+++            +.-.+||||+++-.|...=-.     .-...+   |...|.+-+.-.-.   .+|||+|+.+
T Consensus       174 P~P~~~------------nRHaVvMe~ieG~eL~~~r~~-----~en~~~---il~~il~~~~~~~~---~GiVHGDlSe  230 (304)
T COG0478         174 PKPIAW------------NRHAVVMEYIEGVELYRLRLD-----VENPDE---ILDKILEEVRKAYR---RGIVHGDLSE  230 (304)
T ss_pred             CCcccc------------ccceeeeehcccceeecccCc-----ccCHHH---HHHHHHHHHHHHHH---cCccccCCch
Confidence            665553            345899999998666643210     111222   22333332222223   6899999999


Q ss_pred             CceeecCCCcEEEeccccc
Q 044236          579 NNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       579 ~NILld~~~~~kl~DFGla  597 (747)
                      =||+++++|.+.+.||=-+
T Consensus       231 fNIlV~~dg~~~vIDwPQ~  249 (304)
T COG0478         231 FNILVTEDGDIVVIDWPQA  249 (304)
T ss_pred             heEEEecCCCEEEEeCccc
Confidence            9999999999999999765

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.36  E-value=2e-07  Score=102.50  Aligned_cols=153  Identities=15%  Similarity=0.180  Sum_probs=98.7

Q ss_pred             HHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccc---cceeeecCCccee
Q 044236          555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYG---FLFICRTSAENVV  631 (747)
Q Consensus       555 ~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  631 (747)
                      +++.|+.|+|..  .++||++|.|++|.++..+..||+.|+.+........      ++...|.   +........+.+|
T Consensus       107 ~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~------~p~~~yd~~lp~~~~~~~~f~ap  178 (700)
T KOG2137|consen  107 NVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTE------YPFSEYDPPLPLLLQPHLNFLAP  178 (700)
T ss_pred             cccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCc------cccccCCCCCChhhccCcccccc
Confidence            344899999986  7899999999999999999999999998744332111      1111111   1122344567889


Q ss_pred             eeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHcc
Q 044236          632 IVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCI  710 (747)
Q Consensus       632 e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl  710 (747)
                      |++.....+.++|+||+||++|-+.. |+.-+...............        .+.. ...++.+...++++=+.+.+
T Consensus       179 E~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~--------~~~~-~~~~s~~~p~el~~~l~k~l  249 (700)
T KOG2137|consen  179 EYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNL--------LNAG-AFGYSNNLPSELRESLKKLL  249 (700)
T ss_pred             hhhccccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcc--------cccc-cccccccCcHHHHHHHHHHh
Confidence            99888888999999999999999984 44433222111111111100        0100 01122333444777778889


Q ss_pred             CCCCCCCCCHHHHH
Q 044236          711 CPEPSSRPSFEDVL  724 (747)
Q Consensus       711 ~~dP~~RPs~~evl  724 (747)
                      ..++..||++.++.
T Consensus       250 ~~~~~~rp~~~~l~  263 (700)
T KOG2137|consen  250 NGDSAVRPTLDLLL  263 (700)
T ss_pred             cCCcccCcchhhhh
Confidence            99999999888774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=5.7e-09  Score=113.57  Aligned_cols=124  Identities=28%  Similarity=0.342  Sum_probs=78.6

Q ss_pred             CCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCC
Q 044236          167 NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSR  243 (747)
Q Consensus       167 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~  243 (747)
                      .|...+.+.|++. ....++.=++.|+.|+|++|.++..- .+..|+.|++|||+.|.|.- +|..   ...|..|.+++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-ccccchhhhhheeeeecc
Confidence            4556666666665 34455555666667777777665332 45566667777777776653 2221   12367777777


Q ss_pred             CcCcccCchhhcCCcccCeeecccCcCcccCC-cccCCCCccceeecccccCc
Q 044236          244 NLFSGAIPQQFGELAQLQHLDLSFNDLSGIPP-SVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       244 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~  295 (747)
                      |.++..  ..+.+|.+|+.||+++|-|.+.-. ..++.|..|+.|+|.+|.+.
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            777633  346678888888888888765321 22556778888888888875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=3.3e-07  Score=107.91  Aligned_cols=106  Identities=23%  Similarity=0.322  Sum_probs=79.9

Q ss_pred             CCCEEEeeccC--CCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEE
Q 044236           95 TLRVLSLVSLG--IWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        95 ~L~~L~L~~n~--i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      .|++|-+..|.  +....++.|..|+.|++||||+|.=-+.+|..+++|.+|++|+|++..+. .+|..+++|..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            67777777775  43333344677888888888887766788888888888888888888876 5788888888888888


Q ss_pred             ccCCcCCCCCchhhcCCccCcEEecccCc
Q 044236          173 LKSNQLKGQFPSSICRIATLTDIAMSNNE  201 (747)
Q Consensus       173 l~~N~l~~~~p~~~~~l~~L~~L~l~~N~  201 (747)
                      +..+.....+|..+..|++|++|.+....
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccc
Confidence            88777655566777778888888776654

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.24  E-value=6.5e-06  Score=81.25  Aligned_cols=111  Identities=21%  Similarity=0.218  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHhcCCCCC--cceeeeeeeccCCCCCCCCceEEEEEeccCCC-CcccccccCCCCCCCCHHHHHHHHHHH
Q 044236          480 IQNLKVRLDFLSKLQHPH--LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG-SYRAHLSENCPENVLKWSDRLAILIGV  556 (747)
Q Consensus       480 ~~~~~~E~~~l~~l~H~n--Iv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i  556 (747)
                      .....+|...+..+....  +.+.+++.....    ......++|+|++++- +|.+++....   ..+......++.++
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~----~~~~~s~lite~l~~~~~L~~~~~~~~---~~~~~~~~~ll~~l  127 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRK----GGGYRSYLITEALPGAQDLRDLLQQWE---QLDPSQRRELLRAL  127 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcC----CCceeEEEEEEeCCCcccHHHHHHhhc---ccchhhHHHHHHHH
Confidence            345778888877775333  445555554421    1124568999999874 7888886521   14556678899999


Q ss_pred             HHHHHHhhcCCCCCcccCCCCCCceeecCCC---cEEEecccccccc
Q 044236          557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHR---IAKLSDYGISIIM  600 (747)
Q Consensus       557 a~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl~DFGla~~~  600 (747)
                      ++.++-||.   .+|+|+|+++.|||++.+.   .+.+.||+-++..
T Consensus       128 ~~~i~~lH~---~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  128 ARLIAKLHD---AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHHHHHHH---CcCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            999999999   8999999999999998876   8999999987653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.22  E-value=1.8e-06  Score=61.17  Aligned_cols=40  Identities=30%  Similarity=0.653  Sum_probs=29.0

Q ss_pred             ChhHHHHHHHHHhcCCC-C-CCCCCCCCCC-CCCcccccCCccceEeC
Q 044236            2 QTSQTQVLLQLRKHLEY-P-SPLDIWGNYE-GDLCNLTSTAHVSITCQ   46 (747)
Q Consensus         2 ~~~~~~~l~~~k~~~~~-~-~~l~~w~~~~-~~~c~~~~~~~~~v~c~   46 (747)
                      +++|++||++||+++.+ | ..+.+|+... ++||+|.     ||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~-----GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWS-----GVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCST-----TEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeec-----cEEeC
Confidence            46899999999999984 5 4799998764 7999997     69994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.19  E-value=8.8e-06  Score=90.10  Aligned_cols=141  Identities=17%  Similarity=0.177  Sum_probs=90.0

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeeccch--------------------------hcH--------------HHHHH
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK--------------------------YSI--------------QNLKV  485 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~--------------------------~~~--------------~~~~~  485 (747)
                      +.|+.++-|+||+|++++|+.||||+.+..-.                          ...              -++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            67999999999999999999999998752100                          000              12334


Q ss_pred             HHHHHhcC----C-CCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHH
Q 044236          486 RLDFLSKL----Q-HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV  560 (747)
Q Consensus       486 E~~~l~~l----~-H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL  560 (747)
                      |..-+.++    + .++ |++=.+|++-       .....|+|||++|-.+.+.....  ...++   +..++..++++.
T Consensus       211 EA~n~~~~~~nf~~~~~-v~VP~V~we~-------t~~~VLtmE~i~Gi~i~d~~~l~--~~g~d---~k~ia~~~~~~f  277 (517)
T COG0661         211 EAANAERFRENFKDDPD-VYVPKVYWEY-------TTRRVLTMEWIDGIKISDIAALK--SAGID---RKELAELLVRAF  277 (517)
T ss_pred             HHHHHHHHHHHcCCCCC-eEeceeehhc-------cCCcEEEEEeeCCEecccHHHHH--hcCCC---HHHHHHHHHHHH
Confidence            44444443    2 333 3333334331       23568999999998888874321  12244   233333333321


Q ss_pred             -HHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccc
Q 044236          561 -HFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE  602 (747)
Q Consensus       561 -~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  602 (747)
                       .-+-.   -+++|.|..|-||+++.++..-+-|||+...+.+
T Consensus       278 ~~q~~~---dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         278 LRQLLR---DGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             HHHHHh---cCccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence             11111   4789999999999999999999999999866554

>PRK09902 hypothetical protein; Provisional

Probab=98.17  E-value=2.6e-05  Score=75.49  Aligned_cols=143  Identities=13%  Similarity=0.074  Sum_probs=101.7

Q ss_pred             ccCCCCeeEEEEEeCCCcEEEEEEeec-cc-----hhcHHHHHHHHHHHhcCCCCC--cceeeeeeeccCCCCCCCCceE
Q 044236          448 MGEGSRGKLYKGRLENGTYVAIRSLTF-LK-----KYSIQNLKVRLDFLSKLQHPH--LVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       448 iG~G~~g~Vy~~~~~~g~~vAvK~l~~-~~-----~~~~~~~~~E~~~l~~l~H~n--Iv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      -|+||-+-|++-.+.+ +.+=+|+-.. ..     ......|.+|+..|.++...+  +.+.. ++...   ..+....-
T Consensus        26 ~~rgG~SgV~r~~~~g-~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~---k~~~~~rA  100 (216)
T PRK09902         26 YRRNGMSGVQCVERNG-KKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAV---KIEGEWRA  100 (216)
T ss_pred             cCCCCcceEEEEEeCC-cEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeee---ccCCceEE
Confidence            3678999999988754 4577887641 11     334578999999998885322  33333 32211   01223467


Q ss_pred             EEEEeccCC-CCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc--EEEecccc
Q 044236          520 FLVYEYIPN-GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI--AKLSDYGI  596 (747)
Q Consensus       520 ~lv~Ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--~kl~DFGl  596 (747)
                      +||+|-+++ -+|.+++.+. .....+...+..+..++++.++-||+   .++.|+|+-+.||+++.++.  +++.||--
T Consensus       101 ~LVTe~L~g~~~L~~~l~~~-~~~~~~~~~k~~il~~va~~ia~LH~---~Gv~Hgdly~khIll~~~g~~~v~lIDlEk  176 (216)
T PRK09902        101 LLVTEDMAGFISIADWYAQH-AVSPYSDEVRQAMLKAVALAFKKMHS---VNRQHGCCYVRHIYVKTEGKAEAGFLDLEK  176 (216)
T ss_pred             EEEEEeCCCCccHHHHHhcC-CcCCcchHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHhheeecCCCCeeEEEEEhhc
Confidence            899997763 4888887543 12245667788999999999999999   89999999999999986666  99999987


Q ss_pred             ccc
Q 044236          597 SII  599 (747)
Q Consensus       597 a~~  599 (747)
                      ++.
T Consensus       177 ~r~  179 (216)
T PRK09902        177 SRR  179 (216)
T ss_pred             cch
Confidence            753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.2e-07  Score=82.78  Aligned_cols=103  Identities=23%  Similarity=0.304  Sum_probs=48.5

Q ss_pred             CCEEEeeccCCCCCCChhcc---CCCCCCEEEcccCCCCCCCCcccc-CCCCCCEEEcccCCCCCCCcccccCCCCCCEE
Q 044236           96 LRVLSLVSLGIWGPLPDKIH---RLSSLELLDMSSNFLFGAIPSGIS-RLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL  171 (747)
Q Consensus        96 L~~L~L~~n~i~~~~p~~~~---~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L  171 (747)
                      +..++|+++.+ +.+++...   ....|+..+|++|.+. .+|..|. ..+.++.|+|++|.++. +|.++..++.|+.|
T Consensus        29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhc
Confidence            33445555554 33444332   2233444455555543 3333332 23345555555555543 44455555555555


Q ss_pred             EccCCcCCCCCchhhcCCccCcEEecccCcc
Q 044236          172 SLKSNQLKGQFPSSICRIATLTDIAMSNNEL  202 (747)
Q Consensus       172 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  202 (747)
                      ++++|.|. ..|.-+..|.+|-.|+..+|.+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            55555554 2344444455555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.08  E-value=5.3e-08  Score=106.25  Aligned_cols=125  Identities=26%  Similarity=0.278  Sum_probs=71.9

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK  174 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~  174 (747)
                      .|.+.+.+.|.+. .+-.++.-|+.|+.||||+|+++..-  .+..|+.|++|||++|.++-..--....+. |+.|.|+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            3555555666652 34555666666666677666664332  556666666677766666543222222333 6667777


Q ss_pred             CCcCCCCCchhhcCCccCcEEecccCccccC--CCCCCCCCcCCEEEccCCCC
Q 044236          175 SNQLKGQFPSSICRIATLTDIAMSNNELSGK--LPDMSALTSLHVLDLRENKL  225 (747)
Q Consensus       175 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~l~~L~~L~L~~N~l  225 (747)
                      +|.++..  ..+.+|.+|+.||+++|-|++.  +..++.|..|..|.|.+|.+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            7666532  3455666666677777766543  22345566666666666655

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.08  E-value=2e-05  Score=86.88  Aligned_cols=141  Identities=16%  Similarity=0.174  Sum_probs=87.8

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeeccchh-------------------------------cHH------HHHHHHH
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKY-------------------------------SIQ------NLKVRLD  488 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~-------------------------------~~~------~~~~E~~  488 (747)
                      +.||.-+.|+||+|++++|+.||||+-+..-+.                               -.+      +|.+|.+
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            578999999999999999999999986421000                               001      2333433


Q ss_pred             HH----hcCCCCC------cceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHH
Q 044236          489 FL----SKLQHPH------LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK  558 (747)
Q Consensus       489 ~l----~~l~H~n------Iv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~  558 (747)
                      -.    +.++|-+      |.++|-.+          .....|+||||+|..+.+.-.-.  ...++-......+.++  
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~----------st~RVLtME~~~G~~i~Dl~~i~--~~gi~~~~i~~~l~~~--  312 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDL----------STKRVLTMEYVDGIKINDLDAID--KRGISPHDILNKLVEA--  312 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhc----------CcceEEEEEecCCccCCCHHHHH--HcCCCHHHHHHHHHHH--
Confidence            22    2344555      33333222          23579999999998887653211  1234444333333322  


Q ss_pred             HHHHhhcCCCCCcccCCCCCCceeec----CCCcEEEeccccccccccc
Q 044236          559 AVHFLHSSVISGSFSNRLTTNNILLD----EHRIAKLSDYGISIIMEEH  603 (747)
Q Consensus       559 gL~yLH~~~~~~ivHrDlk~~NILld----~~~~~kl~DFGla~~~~~~  603 (747)
                         |++.-...|++|.|=.|-||+++    .++.+.+-|||+.+.....
T Consensus       313 ---~~~qIf~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~  358 (538)
T KOG1235|consen  313 ---YLEQIFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHK  358 (538)
T ss_pred             ---HHHHHHhcCCccCCCCCCcEEEecCCCCCccEEEEcccccccccHH
Confidence               22221125789999999999998    3678999999998765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	747
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-30
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-30
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-20
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		5e-20
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		6e-20
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		5e-19
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-18
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		5e-18
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-13
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-11
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		2e-09
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		3e-09
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		5e-09
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-09
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		5e-09
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		6e-09
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		6e-09
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		7e-09
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-08
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-08
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		1e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-08
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-08
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		2e-08
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-08
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-08
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-08
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		3e-08
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-08
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-08
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		3e-08
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-08
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		3e-08
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-08
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-08
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		3e-08
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		5e-08
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		6e-08
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		8e-08
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		9e-08
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-07
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		1e-07
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		1e-07
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-07
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		1e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-07
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		2e-07
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-07
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-07
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-07
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		2e-07
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-07
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		3e-07
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-07
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-07
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-07
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-07
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-07
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-07
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-07
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-07
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-07
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-07
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-07
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-07
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		4e-07
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		4e-07
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		6e-07
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		6e-07
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		6e-07
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		6e-07
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		7e-07
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		8e-07
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		8e-07
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		8e-07
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		8e-07
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		8e-07
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		9e-07
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		9e-07
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		1e-06
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		1e-06
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		1e-06
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		1e-06
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		1e-06
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		1e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		1e-06
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		1e-06
3g51_A	325	Structural Diversity Of The Active Conformation Of		1e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		2e-06
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		2e-06
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		2e-06
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		2e-06
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-06
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		2e-06
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		2e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-06
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-06
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		2e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-06
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-06
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		2e-06
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		2e-06
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		2e-06
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-06
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		3e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-06
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-06
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		3e-06
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		3e-06
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		3e-06
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-06
3a4o_X	286	Lyn Kinase Domain Length = 286		3e-06
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		3e-06
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		4e-06
4fvp_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain (		4e-06
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-06
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		4e-06
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		5e-06
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		5e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		5e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-06
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		6e-06
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		7e-06
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		7e-06
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		7e-06
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		8e-06
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		9e-06
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		9e-06
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		9e-06
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		9e-06
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		9e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		1e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		1e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-05
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		1e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		1e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		1e-05
4fvr_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain M		1e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		1e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		1e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		1e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		2e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		2e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-05
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		2e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		2e-05
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		2e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		2e-05
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		2e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-05
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-05
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		2e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-05
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-05
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		3e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-05
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		3e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-05
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		3e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-05
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		3e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		3e-05
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		3e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		3e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		3e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		4e-05
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-05
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		4e-05
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		4e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		4e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		4e-05
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		4e-05
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		4e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-05
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		4e-05
2pl0_A	289	Lck Bound To Imatinib Length = 289		4e-05
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		5e-05
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		5e-05
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		5e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		5e-05
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		6e-05
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		6e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		6e-05
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		7e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		7e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		7e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		7e-05
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		7e-05
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		7e-05
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		7e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		7e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		7e-05
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		8e-05
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		8e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		8e-05
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		8e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		8e-05
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		8e-05
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		9e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		9e-05
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		9e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		9e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		9e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		1e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		1e-04
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		1e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		1e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		1e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-04
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		1e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		1e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-04
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-04
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		2e-04
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		2e-04
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		2e-04
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		2e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		2e-04
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		2e-04
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-04
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		2e-04
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-04
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		3e-04
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		3e-04
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		3e-04
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		3e-04
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		3e-04
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		3e-04
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		3e-04
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		3e-04
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		3e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		3e-04
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		3e-04
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		3e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		3e-04
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		3e-04
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		3e-04
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		3e-04
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		3e-04
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		4e-04
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		4e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		4e-04
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		4e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-04
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		5e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		5e-04
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		5e-04
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		5e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		5e-04
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		5e-04
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		5e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		5e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		6e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		7e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		7e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		7e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		7e-04
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		8e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		8e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		8e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		8e-04
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		8e-04
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		9e-04
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		9e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		9e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 148/301 (49%), Gaps = 26/301 (8%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS 491
           L +L+EATNNFD    +G G  GK+YKG L +G  VA++  T      I+  +  ++ LS
Sbjct: 31  LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-SENCPENVLKWSDRL 550
             +HPHLVSL+G C E         N++ L+Y+Y+ NG+ + HL   + P   + W  RL
Sbjct: 91  FCRHPHLVSLIGFCDER--------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
            I IG A+ +H+LH+  I       + + NILLDE+ + K++D+GIS    E ++     
Sbjct: 143 EICIGAARGLHYLHTRAI---IHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLX- 198
Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP---IVTGKGEA 667
              K   G++       E  +      R   + DVY+FG +L E L      + +   E 
Sbjct: 199 XVVKGTLGYI-----DPEYFI----KGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREM 249
Query: 668 FLLNEMASFGSQDGR-RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN 726
             L E A     +G+  +IVDP +      ESL        KC+      RPS  DVLW 
Sbjct: 250 VNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWK 309
Query: 727 L 727
           L
Sbjct: 310 L 310

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 147/305 (48%), Gaps = 34/305 (11%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS 491
           L +L+EATNNFD    +G G  GK+YKG L +G  VA++  T      I+  +  ++ LS
Sbjct: 31  LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-SENCPENVLKWSDRL 550
             +HPHLVSL+G C E         N++ L+Y+Y+ NG+ + HL   + P   + W  RL
Sbjct: 91  FCRHPHLVSLIGFCDER--------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI----IMEEHEKL 606
            I IG A+ +H+LH+  I       + + NILLDE+ + K++D+GIS     + + H   
Sbjct: 143 EICIGAARGLHYLHTRAI---IHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXX 199
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP---IVTG 663
             KG        +    R + ++              DVY+FG +L E L      + + 
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTEKS--------------DVYSFGVVLFEVLCARSAIVQSL 245
Query: 664 KGEAFLLNEMASFGSQDGR-RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED 722
             E   L E A     +G+  +IVDP +      ESL        KC+      RPS  D
Sbjct: 246 PREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGD 305
Query: 723 VLWNL 727
           VLW L
Sbjct: 306 VLWKL 310

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 45/314 (14%)
Query: 427 YRTFYLEELKEATNNFDSLSF------MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI 480
           + +F   ELK  TNNFD          MGEG  G +YKG + N T VA++ L  +   + 
Sbjct: 6   FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 64
Query: 481 QNLKVRLD----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS 536
           + LK + D     ++K QH +LV LLG          S+ + + LVY Y+PNGS    LS
Sbjct: 65  EELKQQFDQEIKVMAKCQHENLVELLGFS--------SDGDDLCLVYVYMPNGSLLDRLS 116
Query: 537 ENCPENV--LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
             C +    L W  R  I  G A  ++FLH +         + + NILLDE   AK+SD+
Sbjct: 117 --CLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDF 171
Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL--EDDVYNFGFIL 652
           G++   E+  +              +   R       +  +  R ++  + D+Y+FG +L
Sbjct: 172 GLARASEKFAQX-------------VMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVL 218
Query: 653 LESLVG-PIVTGKGEAFLL--NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKC 709
           LE + G P V    E  LL   +      +      +D   +      S+  + S+ ++C
Sbjct: 219 LEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDK-KMNDADSTSVEAMYSVASQC 277
Query: 710 ICPEPSSRPSFEDV 723
           +  + + RP  + V
Sbjct: 278 LHEKKNKRPDIKKV 291

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 45/314 (14%)
Query: 427 YRTFYLEELKEATNNFDSLSF------MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI 480
           + +F   ELK  TNNFD          MGEG  G +YKG + N T VA++ L  +   + 
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 70
Query: 481 QNLKVRLD----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS 536
           + LK + D     ++K QH +LV LLG          S+ + + LVY Y+PNGS    LS
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLGFS--------SDGDDLCLVYVYMPNGSLLDRLS 122
Query: 537 ENCPENV--LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
             C +    L W  R  I  G A  ++FLH +         + + NILLDE   AK+SD+
Sbjct: 123 --CLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDF 177
Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL--EDDVYNFGFIL 652
           G++   E+  +              +   R       +  +  R ++  + D+Y+FG +L
Sbjct: 178 GLARASEKFAQT-------------VMXSRIVGTTAYMAPEALRGEITPKSDIYSFGVVL 224
Query: 653 LESLVG-PIVTGKGEAFLL--NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKC 709
           LE + G P V    E  LL   +      +      +D   +      S+  + S+ ++C
Sbjct: 225 LEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDK-KMNDADSTSVEAMYSVASQC 283
Query: 710 ICPEPSSRPSFEDV 723
           +  + + RP  + V
Sbjct: 284 LHEKKNKRPDIKKV 297

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 45/314 (14%)
Query: 427 YRTFYLEELKEATNNFDSLSF------MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI 480
           + +F   ELK  TNNFD          MGEG  G +YKG + N T VA++ L  +   + 
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 70
Query: 481 QNLKVRLD----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS 536
           + LK + D     ++K QH +LV LLG          S+ + + LVY Y+PNGS    LS
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLGFS--------SDGDDLCLVYVYMPNGSLLDRLS 122
Query: 537 ENCPENV--LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
             C +    L W  R  I  G A  ++FLH +         + + NILLDE   AK+SD+
Sbjct: 123 --CLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDF 177
Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL--EDDVYNFGFIL 652
           G++   E+  +              +   R       +  +  R ++  + D+Y+FG +L
Sbjct: 178 GLARASEKFAQT-------------VMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVL 224
Query: 653 LESLVG-PIVTGKGEAFLL--NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKC 709
           LE + G P V    E  LL   +      +      +D   +      S+  + S+ ++C
Sbjct: 225 LEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDK-KMNDADSTSVEAMYSVASQC 283
Query: 710 ICPEPSSRPSFEDV 723
           +  + + RP  + V
Sbjct: 284 LHEKKNKRPDIKKV 297

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 35/309 (11%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQ-NLKVR 486
           + F L EL+ A++NF + + +G G  GK+YKGRL +GT VA++ L   +    +   +  
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV--L 544
           ++ +S   H +L+ L G C+           +  LVY Y+ NGS  + L E  PE+   L
Sbjct: 86  VEMISMAVHRNLLRLRGFCM--------TPTERLLVYPYMANGSVASCLRER-PESQPPL 136
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---E 601
            W  R  I +G A+ + +LH           +   NILLDE   A + D+G++ +M   +
Sbjct: 137 DWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD 196
Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--- 658
            H     +G        +L   ++S +               DV+ +G +LLE + G   
Sbjct: 197 XHVXXAVRGTIGHIAPEYLSTGKSSEKT--------------DVFGYGVMLLELITGQRA 242
Query: 659 ---PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
                +    +  LL+ +     +     +VD  +      E +  ++ +   C    P 
Sbjct: 243 FDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPM 302
Query: 716 SRPSFEDVL 724
            RP   +V+
Sbjct: 303 ERPKMSEVV 311

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 35/309 (11%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQ-NLKVR 486
           + F L EL+ A++NF + + +G G  GK+YKGRL +G  VA++ L   +    +   +  
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV--L 544
           ++ +S   H +L+ L G C+           +  LVY Y+ NGS  + L E  PE+   L
Sbjct: 78  VEMISMAVHRNLLRLRGFCM--------TPTERLLVYPYMANGSVASCLRER-PESQPPL 128
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---E 601
            W  R  I +G A+ + +LH           +   NILLDE   A + D+G++ +M   +
Sbjct: 129 DWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD 188
Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--- 658
            H     +G        +L   ++S +               DV+ +G +LLE + G   
Sbjct: 189 XHVXXAVRGXIGHIAPEYLSTGKSSEKT--------------DVFGYGVMLLELITGQRA 234
Query: 659 ---PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
                +    +  LL+ +     +     +VD  +      E +  ++ +   C    P 
Sbjct: 235 FDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPM 294
Query: 716 SRPSFEDVL 724
            RP   +V+
Sbjct: 295 ERPKMSEVV 303

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 116/259 (44%), Gaps = 42/259 (16%)
Query: 427 YRTFYLEELKEATNNFDSLSF------MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI 480
           + +F   ELK  TNNFD           GEG  G +YKG + N T VA++ L  +   + 
Sbjct: 3   FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 61
Query: 481 QNLKVRLD----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS 536
           + LK + D      +K QH +LV LLG          S+ + + LVY Y PNGS    LS
Sbjct: 62  EELKQQFDQEIKVXAKCQHENLVELLGFS--------SDGDDLCLVYVYXPNGSLLDRLS 113
Query: 537 ENCPENV--LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
             C +    L W  R  I  G A  ++FLH +         + + NILLDE   AK+SD+
Sbjct: 114 --CLDGTPPLSWHXRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDF 168
Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL--EDDVYNFGFIL 652
           G++   E+  +              +   R          +  R ++  + D+Y+FG +L
Sbjct: 169 GLARASEKFAQX-------------VXXSRIVGTTAYXAPEALRGEITPKSDIYSFGVVL 215
Query: 653 LESLVG-PIVTGKGEAFLL 670
           LE + G P V    E  LL
Sbjct: 216 LEIITGLPAVDEHREPQLL 234

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%)
Query: 108 GPLP-DKIHRLSSLELLDMSSNFLFGAIPSGISRL-VRLQTLTMDTNFFDDNV-PDWWDS 164
           G LP D + ++  L++LD+S N   G +P  ++ L   L TL + +N F   + P+   +
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 165 LSN-LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRE 222
             N L  L L++N   G+ P ++   + L  + +S N LSG +P  + +L+ L  L L  
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 223 NKLDSGLP---LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
           N L+  +P   +  K L T++L  N  +G IP        L  + LS N L+G  P  + 
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 280 SLPNISYLHLASNMLSGTLPKDL 302
            L N++ L L++N  SG +P +L
Sbjct: 509 RLENLAILKLSNNSFSGNIPAEL 531

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%)
Query: 108 GPLP-DKIHRLSSLELLDMSSNFLFGAIPSGISRL-VRLQTLTMDTNFFDDNV-PDWWDS 164
           G LP D + ++  L++LD+S N   G +P  ++ L   L TL + +N F   + P+   +
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 165 LSN-LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRE 222
             N L  L L++N   G+ P ++   + L  + +S N LSG +P  + +L+ L  L L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 223 NKLDSGLP---LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
           N L+  +P   +  K L T++L  N  +G IP        L  + LS N L+G  P  + 
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 280 SLPNISYLHLASNMLSGTLPKDL 302
            L N++ L L++N  SG +P +L
Sbjct: 512 RLENLAILKLSNNSFSGNIPAEL 534

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
           GP+P  I +L+ L  L ++   + GAIP  +S++  L TL    N     +P    SL N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 168 LTVLSLKSNQLKGQFPSSICRIATL-TDIAMSNNELSGKLPDMSALTSLHVLDLRENKL- 225
           L  ++   N++ G  P S    + L T + +S N L+GK+P   A  +L  +DL  N L 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Query: 226 -------------------------DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQL 260
                                    D G   + K L  + L  N   G +PQ   +L  L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 261 QHLDLSFNDLSG 272
             L++SFN+L G
Sbjct: 271 HSLNVSFNNLCG 282

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 39/291 (13%)
Query: 448 MGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYS----IQNLKVRLDFLSKLQHPHL 498
           +GEG  GK+   R +      G  VA++SL   K  S    I +LK  ++ L  L H ++
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSL---KPESGGNHIADLKKEIEILRNLYHENI 85
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V   G C E G       N + L+ E++P+GS + +L +N  +N +    +L   + + K
Sbjct: 86  VKYKGICTEDGG------NGIKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICK 137
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIME-EHEKLEAKGEGPKAR 616
            + +L S      + +R L   N+L++     K+ D+G++  +E + E    K +     
Sbjct: 138 GMDYLGSR----QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPV 193
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
           + +   C   ++  +            DV++FG  L E L          A  L  +   
Sbjct: 194 FWYAPECLMQSKFYIA----------SDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPT 243
Query: 677 GSQDGRRRIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             Q    R+V+ +       C       V  +  KC   +PS+R SF++++
Sbjct: 244 HGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLI 294

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 39/291 (13%)
Query: 448 MGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYS----IQNLKVRLDFLSKLQHPHL 498
           +GEG  GK+   R +      G  VA++SL   K  S    I +LK  ++ L  L H ++
Sbjct: 17  LGEGHFGKVELCRYDPEGDNTGEQVAVKSL---KPESGGNHIADLKKEIEILRNLYHENI 73
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V   G C E G       N + L+ E++P+GS + +L +N  +N +    +L   + + K
Sbjct: 74  VKYKGICTEDGG------NGIKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICK 125
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIME-EHEKLEAKGEGPKAR 616
            + +L S      + +R L   N+L++     K+ D+G++  +E + E    K +     
Sbjct: 126 GMDYLGSR----QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPV 181
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
           + +   C   ++  +            DV++FG  L E L          A  L  +   
Sbjct: 182 FWYAPECLMQSKFYIA----------SDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPT 231
Query: 677 GSQDGRRRIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             Q    R+V+ +       C       V  +  KC   +PS+R SF++++
Sbjct: 232 HGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLI 282

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 44/291 (15%)
Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +GEG+ GK++     N         VA+++L    + + Q+ +   + L+ LQH H+V  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------ENVLKWSDRLAIL 553
            G C E           + +V+EY+ +G     L  + P        E+V      L  L
Sbjct: 109 FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 160
Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
           + VA  V      +    F +R L T N L+ +  + K+ D+G+S  +   +     G  
Sbjct: 161 LAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR- 219
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE 672
                  L I     E+++     ++   E DV++FG +L E        GK   + L+ 
Sbjct: 220 -----TMLPIRWMPPESIL----YRKFTTESDVWSFGVVLWEIF----TYGKQPWYQLSN 266
Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             +       R +  P     C  E    V +I   C   EP  R S +DV
Sbjct: 267 TEAIDCITQGRELERP---RACPPE----VYAIMRGCWQREPQQRHSIKDV 310

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 330
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 331 VSE---------EPIYIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 376
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 377 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT--------ARQGAKFPI 428
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 429 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 471
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   EP  RP+FE
Sbjct: 472 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 512

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 120/301 (39%), Gaps = 61/301 (20%)
Query: 448 MGEGSRGK--LYKGRLEN---GTYVAIRSLTF-LKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +GEG  GK  LY     N   G  VA+++L            K  +D L  L H H++  
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C      +D+    + LV EY+P GS R +L    P + +  +  L     + + + 
Sbjct: 99  KGCC------EDAGAASLQLVMEYVPLGSLRDYL----PRHSIGLAQLLLFAQQICEGMA 148
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEGPKARYGF 619
           +LH+      + +R L   N+LLD  R+ K+ D+G++  + E HE    + +G    + +
Sbjct: 149 YLHAQ----HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDSPVFWY 204
Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE----------------SLVGPIVTG 663
              C          +   +     DV++FG  L E                 L+G I  G
Sbjct: 205 APEC----------LKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIG-IAQG 253
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
           +     L E+   G      R+  P     C  E    V  +   C   E S RP+FE++
Sbjct: 254 QMTVLRLTELLERGE-----RLPRP---DKCPAE----VYHLMKNCWETEASFRPTFENL 301
Query: 724 L 724
           +
Sbjct: 302 I 302

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 44/291 (15%)
Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +GEG+ GK++     N         VA+++L    + + Q+ +   + L+ LQH H+V  
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------ENVLKWSDRLAIL 553
            G C E           + +V+EY+ +G     L  + P        E+V      L  L
Sbjct: 80  FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 131
Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
           + VA  V      +    F +R L T N L+ +  + K+ D+G+S  +   +     G  
Sbjct: 132 LAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR- 190
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE 672
                  L I     E+++     ++   E DV++FG +L E        GK   + L+ 
Sbjct: 191 -----TMLPIRWMPPESIL----YRKFTTESDVWSFGVVLWEIF----TYGKQPWYQLSN 237
Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             +       R +  P     C  E    V +I   C   EP  R S +DV
Sbjct: 238 TEAIDCITQGRELERP---RACPPE----VYAIMRGCWQREPQQRHSIKDV 281

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 128/330 (38%), Gaps = 74/330 (22%)
Query: 423 GSPA-----YRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLEN---GTYVAIRSL 472
           GSPA     +   YL+++++          +GEG  GK  LY     N   G  VA+++L
Sbjct: 2   GSPASDPTVFHKRYLKKIRD----------LGEGHFGKVSLYCYDPTNDGTGEMVAVKAL 51
Query: 473 TF-LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY 531
                       K  +D L  L H H++   G C      +D     + LV EY+P GS 
Sbjct: 52  KADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC------EDQGEKSLQLVMEYVPLGSL 105
Query: 532 RAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
           R +L    P + +  +  L     + + + +LHS          L   N+LLD  R+ K+
Sbjct: 106 RDYL----PRHSIGLAQLLLFAQQICEGMAYLHSQ---HYIHRNLAARNVLLDNDRLVKI 158
Query: 592 SDYGIS-IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF 650
            D+G++  + E HE    + +G    + +   C          +   +     DV++FG 
Sbjct: 159 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAPEC----------LKEYKFYYASDVWSFGV 208
Query: 651 ILLE----------------SLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTC 694
            L E                 L+G I  G+     L E+   G      R+  P     C
Sbjct: 209 TLYELLTHCDSSQSPPTKFLELIG-IAQGQMTVLRLTELLERGE-----RLPRP---DKC 259
Query: 695 SQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             E    V  +   C   E S RP+FE+++
Sbjct: 260 PCE----VYHLMKNCWETEASFRPTFENLI 285

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 44/291 (15%)
Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +GEG+ GK++     N         VA+++L    + + Q+ +   + L+ LQH H+V  
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------ENVLKWSDRLAIL 553
            G C E           + +V+EY+ +G     L  + P        E+V      L  L
Sbjct: 86  FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 137
Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
           + VA  V      +    F +R L T N L+ +  + K+ D+G+S  +   +     G  
Sbjct: 138 LAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR- 196
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE 672
                  L I     E+++     ++   E DV++FG +L E        GK   + L+ 
Sbjct: 197 -----TMLPIRWMPPESIL----YRKFTTESDVWSFGVVLWEIF----TYGKQPWYQLSN 243
Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             +       R +  P     C  E    V +I   C   EP  R S +DV
Sbjct: 244 TEAIDCITQGRELERP---RACPPE----VYAIMRGCWQREPQQRHSIKDV 287

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 19  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 74
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 75  VSE---------EPIYIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 120
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 121 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 172
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N       + G R
Sbjct: 173 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYR 226
Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
                     C  E    +  +  +C   EP  RP+FE
Sbjct: 227 --------MPCPPECPESLHDLMCQCWRKEPEERPTFE 256

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 247
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 248 VSE---------EPIYIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 293
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 294 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 345
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N           R
Sbjct: 346 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 388
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   EP  RP+FE
Sbjct: 389 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 128/330 (38%), Gaps = 74/330 (22%)
Query: 423 GSPA-----YRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLEN---GTYVAIRSL 472
           GSPA     +   YL+++++          +GEG  GK  LY     N   G  VA+++L
Sbjct: 2   GSPASDPTVFHKRYLKKIRD----------LGEGHFGKVSLYCYDPTNDGTGEMVAVKAL 51
Query: 473 TF-LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY 531
                       K  +D L  L H H++   G C      +D     + LV EY+P GS 
Sbjct: 52  KADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC------EDQGEKSLQLVMEYVPLGSL 105
Query: 532 RAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
           R +L    P + +  +  L     + + + +LH+          L   N+LLD  R+ K+
Sbjct: 106 RDYL----PRHSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRNLAARNVLLDNDRLVKI 158
Query: 592 SDYGIS-IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF 650
            D+G++  + E HE    + +G    + +   C          +   +     DV++FG 
Sbjct: 159 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAPEC----------LKEYKFYYASDVWSFGV 208
Query: 651 ILLE----------------SLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTC 694
            L E                 L+G I  G+     L E+   G      R+  P     C
Sbjct: 209 TLYELLTHCDSSQSPPTKFLELIG-IAQGQMTVLRLTELLERGE-----RLPRP---DKC 259
Query: 695 SQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             E    V  +   C   E S RP+FE+++
Sbjct: 260 PCE----VYHLMKNCWETEASFRPTFENLI 285

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 247
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 248 VSE---------EPIYIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 293
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 294 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 345
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N           R
Sbjct: 346 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 388
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   EP  RP+FE
Sbjct: 389 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 247
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 248 VSE---------EPIYIVGEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 293
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 294 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 345
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N           R
Sbjct: 346 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 388
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   EP  RP+FE
Sbjct: 389 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 82  VSE---------EPIYIVIEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEX--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 34/219 (15%)
Query: 448 MGEGSRGK--LYKGRLEN---GTYVAIRSLTFLKKYSIQN-LKVRLDFLSKLQHPHLVSL 501
           +GEG  GK  LY     N   G  VA+++L       +++  +  ++ L  L H H+V  
Sbjct: 17  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 76
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGVAKA 559
            G C      +D     V LV EY+P GS R +L  +C     +L ++ ++   +    A
Sbjct: 77  KGCC------EDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLHA 130
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEGPKARYG 618
            H++H +         L   N+LLD  R+ K+ D+G++  + E HE    + +G    + 
Sbjct: 131 QHYIHRA---------LAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFW 181
Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV 657
           +   C              +     DV++FG  L E L 
Sbjct: 182 YAPECLKEC----------KFYYASDVWSFGVTLYELLT 210

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 448 MGEGSRGK--LYKGRLEN---GTYVAIRSLTFLKKYSIQN-LKVRLDFLSKLQHPHLVSL 501
           +GEG  GK  LY     N   G  VA+++L       +++  +  ++ L  L H H+V  
Sbjct: 16  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 75
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGVAKA 559
            G C      +D     V LV EY+P GS R +L  +C     +L ++ ++   +    A
Sbjct: 76  KGCC------EDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLHA 129
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEGPKARYG 618
            H++H +         L   N+LLD  R+ K+ D+G++  + E HE    + +G    + 
Sbjct: 130 QHYIHRA---------LAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFW 180
Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           +   C              +     DV++FG  L E L
Sbjct: 181 YAPECLKEC----------KFYYASDVWSFGVTLYELL 208

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 82  VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 128 AYVERMNYVHRDLAAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 16  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 71
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           + +V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 72  VSE---------EPIXIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 117
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 118 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEX--------TARQGAKFPI 169
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N       + G R
Sbjct: 170 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYR 223
Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
                     C  E    +  +  +C   EP  RP+FE
Sbjct: 224 --------MPCPPECPESLHDLMCQCWRKEPEERPTFE 253

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 82  VSE---------EPIYIVIEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 82  VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 78
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ ++  +    
Sbjct: 79  VSE---------EPIYIVTEYMNKGSLLDFLKGETGKYL-----RLPQLVDMSAQIASGM 124
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 125 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEW--------TARQGAKFPI 176
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N           R
Sbjct: 177 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 219
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   EP  RP+FE
Sbjct: 220 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 260

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 15  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 70
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 71  VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 116
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 117 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 168
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N       + G R
Sbjct: 169 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYR 222
Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
                     C  E    +  +  +C   +P  RP+FE
Sbjct: 223 --------MPCPPECPESLHDLMCQCWRKDPEERPTFE 252

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 17  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 72
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 73  VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 118
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 119 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 170
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N       + G R
Sbjct: 171 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYR 224
Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
                     C  E    +  +  +C   +P  RP+FE
Sbjct: 225 --------MPCPPECPESLHDLMCQCWRKDPEERPTFE 254

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 127/295 (43%), Gaps = 58/295 (19%)
Query: 446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKLQHPHLVSL 501
             +G G  GK+Y+     G  VA+++           +I+N++      + L+HP++++L
Sbjct: 13  EIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-ENCPENVL-KWSDRLAILIGVAKA 559
            G C++  +        + LV E+   G     LS +  P ++L  W+      + +A+ 
Sbjct: 72  RGVCLKEPN--------LCLVMEFARGGPLNRVLSGKRIPPDILVNWA------VQIARG 117
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDE--------HRIAKLSDYGISIIMEEHEKLEAKGE 611
           +++LH   I       L ++NIL+ +        ++I K++D+G++       K+ A G 
Sbjct: 118 MNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGA 177
Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFL 669
                Y ++      A  V+      +     DV+++G +L E L G  P     G A  
Sbjct: 178 -----YAWM------APEVIRASMFSKGS---DVWSYGVLLWELLTGEVPFRGIDGLA-- 221
Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                ++G    +  +  P   +TC +        +   C  P+P SRPSF ++L
Sbjct: 222 ----VAYGVAMNKLALPIP---STCPEP----FAKLMEDCWNPDPHSRPSFTNIL 265

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 78
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ ++  +    
Sbjct: 79  VSE---------EPIYIVTEYMNKGSLLDFLKGETGKYL-----RLPQLVDMSAQIASGM 124
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 125 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 176
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N           R
Sbjct: 177 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 219
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   EP  RP+FE
Sbjct: 220 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 260

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 82  VSE---------EPIYIVCEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 44/285 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 32  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 88
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 89  ------STAPQLAIVTQWCEGSSLYHHL--HASETKFEMKKLIDIARQTARGMDYLHAKS 140
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++    E  +     +  +     L++    A
Sbjct: 141 I---IHRDLKSNNIFLHEDNTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 190
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVD 687
             V+ + D      + DVY FG +L E + G +               + + + R +I++
Sbjct: 191 PEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL--------------PYSNINNRDQIIE 236
Query: 688 PVVLTTCSQESLSIVVS--------ITNKCICPEPSSRPSFEDVL 724
            V   + S + LS V S        +  +C+  +   RPSF  +L
Sbjct: 237 MVGRGSLSPD-LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 44/285 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 32  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 88
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 89  ------STKPQLAIVTQWCEGSSLYHHL--HASETKFEMKKLIDIARQTARGMDYLHAKS 140
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++    E  +     +  +     L++    A
Sbjct: 141 I---IHRDLKSNNIFLHEDNTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 190
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVD 687
             V+ + D      + DVY FG +L E + G +               + + + R +I++
Sbjct: 191 PEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL--------------PYSNINNRDQIIE 236
Query: 688 PVVLTTCSQESLSIVVS--------ITNKCICPEPSSRPSFEDVL 724
            V   + S + LS V S        +  +C+  +   RPSF  +L
Sbjct: 237 MVGRGSLSPD-LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + K++H  LV L   
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKIRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  GS    L     + +     RL  L+ +A  +    
Sbjct: 82  VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  G     L     + +     RL  L+ +A  +    
Sbjct: 82  VSE---------EPIYIVMEYMSKGCLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      V   G   ++N           R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 117/286 (40%), Gaps = 44/286 (15%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTF-----LKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +G G+ G+++ GRL  + T VA++S        LK   +Q  ++    L +  HP++V L
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARI----LKQYSHPNIVRL 177
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           +G C        +    +++V E +  G +   L        L+    L ++   A  + 
Sbjct: 178 IGVC--------TQKQPIYIVMELVQGGDFLTFLRTEGAR--LRVKTLLQMVGDAAAGME 227
Query: 562 FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           +L S          L   N L+ E  + K+SD+G+S   EE + + A   G +     + 
Sbjct: 228 YLESKC---CIHRDLAARNCLVTEKNVLKISDFGMS--REEADGVXAASGGLRQ----VP 278
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
           +  T+ E     ++  R   E DV++FG +L E+           +   +   +  +Q  
Sbjct: 279 VKWTAPE----ALNYGRYSSESDVWSFGILLWETF----------SLGASPYPNLSNQQ- 323
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
            R  V+      C +     V  +  +C   EP  RPSF  +   L
Sbjct: 324 TREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQEL 369

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 124/295 (42%), Gaps = 54/295 (18%)
Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +GEG+ GK++     N         VA+++L      + ++     + L+ LQH H+V  
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAH------LSENCPENVLKWSDRLA 551
            G C+E         + + +V+EY+ +G      RAH      ++E  P   L  S  L 
Sbjct: 81  YGVCVEG--------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLH 132
Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
           I   +A  + +L S      F +R L T N L+ E+ + K+ D+G+S  +   +     G
Sbjct: 133 IAQQIAAGMVYLASQ----HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGG 188
Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
                 +  L I     E+++     ++   E DV++ G +L E        GK   + L
Sbjct: 189 ------HTMLPIRWMPPESIM----YRKFTTESDVWSLGVVLWEIF----TYGKQPWYQL 234
Query: 671 --NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             NE+    +Q   R +  P    TC QE   +++     C   EP  R + + +
Sbjct: 235 SNNEVIECITQG--RVLQRP---RTCPQEVYELMLG----CWQREPHMRKNIKGI 280

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           +G+G  G+++ G     T VAI++L   T   +  +Q  +V    + KL+H  LV L   
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             E           +++V EY+  G     L     + +     RL  L+ +A  +    
Sbjct: 82  VSE---------EPIYIVTEYMSKGCLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
           + V   ++ +R L   NIL+ E+ + K++D+G++ ++E++E          AR G  F  
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
           + +A    +     R  ++ DV++FG +L E      +T KG       +         R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            ++D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G+G  G+++ G     T VAI++L      S +        + KL+H  LV L     E
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 251
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      +++V EY+  GS    L     + +     RL  L+ +A  +    + V
Sbjct: 252 ---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGMAYV 297
Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
              ++ +R L   NIL+ E+ + K++D+G+  ++E++E          AR G  F  + +
Sbjct: 298 ERMNYVHRDLRAANILVGENLVCKVADFGLGRLIEDNEY--------TARQGAKFPIKWT 349
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIV 686
           A    +     R  ++ DV++FG +L E      +T KG       +         R ++
Sbjct: 350 APEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NREVL 392
Query: 687 DPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
           D V       C  E    +  +  +C   +P  RP+FE
Sbjct: 393 DQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 430

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 117/285 (41%), Gaps = 44/285 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 20  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 76
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 77  ------STKPQLAIVTQWCEGSSLYHHL--HASETKFEMKKLIDIARQTARGMDYLHAKS 128
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++ +     +     +  +     L++    A
Sbjct: 129 I---IHRDLKSNNIFLHEDNTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 178
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVD 687
             V+ + D      + DVY FG +L E + G +               + + + R +I++
Sbjct: 179 PEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL--------------PYSNINNRDQIIE 224
Query: 688 PVVLTTCSQESLSIVVS--------ITNKCICPEPSSRPSFEDVL 724
            V   + S + LS V S        +  +C+  +   RPSF  +L
Sbjct: 225 MVGRGSLSPD-LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 268

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 117/286 (40%), Gaps = 44/286 (15%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTF-----LKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           +G G+ G+++ GRL  + T VA++S        LK   +Q  ++    L +  HP++V L
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARI----LKQYSHPNIVRL 177
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           +G C        +    +++V E +  G +   L        L+    L ++   A  + 
Sbjct: 178 IGVC--------TQKQPIYIVMELVQGGDFLTFLRTEGAR--LRVKTLLQMVGDAAAGME 227
Query: 562 FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           +L S          L   N L+ E  + K+SD+G+S   EE + + A   G +     + 
Sbjct: 228 YLESKC---CIHRDLAARNCLVTEKNVLKISDFGMS--REEADGVYAASGGLRQ----VP 278
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
           +  T+ E     ++  R   E DV++FG +L E+           +   +   +  +Q  
Sbjct: 279 VKWTAPE----ALNYGRYSSESDVWSFGILLWETF----------SLGASPYPNLSNQQ- 323
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
            R  V+      C +     V  +  +C   EP  RPSF  +   L
Sbjct: 324 TREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQEL 369

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 84/199 (42%), Gaps = 33/199 (16%)
Query: 110 LPDK-IHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
           LP K  HRL+ L LL ++ N L   +P+GI   L  L+TL +  N         +D L N
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKL 225
           L  L L  NQLK   P     +  LT +++  NEL   LP      LTSL  L L  N+L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL 169
Query: 226 DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
                 +P+G                  F +L +L+ L L  N L  +P     SL  + 
Sbjct: 170 KR----VPEG-----------------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 286 YLHLASNMLSGTLPKDLSC 304
            L L  N      P D +C
Sbjct: 209 MLQLQEN------PWDCTC 221

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 16  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 75
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 76  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 129
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H +         L T NIL++     K+ D+G++ ++   +E+ K++  GE 
Sbjct: 130 YLGTKRYIHRN---------LATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGES 180
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 181 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 210

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 124/308 (40%), Gaps = 68/308 (22%)
Query: 448 MGEGSRGKLYK-------GRLENGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLV 499
           +GEG  GK+ K       GR    T VA++ L      S +++L    + L ++ HPH++
Sbjct: 31  LGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVI 89
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE---------------------N 538
            L G C + G         + L+ EY   GS R  L E                     +
Sbjct: 90  KLYGACSQDGP--------LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
             E  L   D ++    +++ + +L       S  +R L   NIL+ E R  K+SD+G+S
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEM----SLVHRDLAARNILVAEGRKMKISDFGLS 197
Query: 598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--S 655
             + E +    + +G   R    ++   S  + +          + DV++FG +L E  +
Sbjct: 198 RDVYEEDSXVKRSQG---RIPVKWMAIESLFDHIYTT-------QSDVWSFGVLLWEIVT 247
Query: 656 LVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
           L G    G     L N + +        R+  P     CS+E   +++    +C   EP 
Sbjct: 248 LGGNPYPGIPPERLFNLLKT------GHRMERP---DNCSEEMYRLML----QCWKQEPD 294
Query: 716 SRPSFEDV 723
            RP F D+
Sbjct: 295 KRPVFADI 302

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 59/309 (19%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-Q 494
           N+      +GEG+ G++ K R++        ++  +K+Y+ ++        L+ L KL  
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-------------NCPE 541
           HP++++LLG C   G         ++L  EY P+G+    L +             N   
Sbjct: 85  HPNIINLLGACEHRGY--------LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 136
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM 600
           + L     L     VA+ + +L        F +R L   NIL+ E+ +AK++D+G+S   
Sbjct: 137 STLSSQQLLHFAADVARGMDYLSQK----QFIHRDLAARNILVGENYVAKIADFGLSRGQ 192
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVG 658
           E +          K   G L +   + E++   V    +    DV+++G +L E  SL G
Sbjct: 193 EVY---------VKKTMGRLPVRWMAIESLNYSVYTTNS----DVWSYGVLLWEIVSLGG 239
Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
               G   A L  ++          R+  P+    C  E    V  +  +C   +P  RP
Sbjct: 240 TPYCGMTCAELYEKLPQ------GYRLEKPL---NCDDE----VYDLMRQCWREKPYERP 286
Query: 719 SFEDVLWNL 727
           SF  +L +L
Sbjct: 287 SFAQILVSL 295

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 66/307 (21%)
Query: 448 MGEGSRGKLYK-------GRLENGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLV 499
           +GEG  GK+ K       GR    T VA++ L      S +++L    + L ++ HPH++
Sbjct: 31  LGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVI 89
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE---------------------N 538
            L G C + G         + L+ EY   GS R  L E                     +
Sbjct: 90  KLYGACSQDGP--------LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
             E  L   D ++    +++ + +L    +       L   NIL+ E R  K+SD+G+S 
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMKL---VHRDLAARNILVAEGRKMKISDFGLSR 198
Query: 599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SL 656
            + E +    + +G   R    ++   S  + +          + DV++FG +L E  +L
Sbjct: 199 DVYEEDSXVKRSQG---RIPVKWMAIESLFDHIYTT-------QSDVWSFGVLLWEIVTL 248
Query: 657 VGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
            G    G     L N + +        R+  P     CS+E   +++    +C   EP  
Sbjct: 249 GGNPYPGIPPERLFNLLKT------GHRMERP---DNCSEEMYRLML----QCWKQEPDK 295
Query: 717 RPSFEDV 723
           RP F D+
Sbjct: 296 RPVFADI 302

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 59/309 (19%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-Q 494
           N+      +GEG+ G++ K R++        ++  +K+Y+ ++        L+ L KL  
Sbjct: 15  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-------------NCPE 541
           HP++++LLG C   G         ++L  EY P+G+    L +             N   
Sbjct: 75  HPNIINLLGACEHRGY--------LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 126
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM 600
           + L     L     VA+ + +L        F +R L   NIL+ E+ +AK++D+G+S   
Sbjct: 127 STLSSQQLLHFAADVARGMDYLSQK----QFIHRDLAARNILVGENYVAKIADFGLSRGQ 182
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVG 658
           E +          K   G L +   + E++   V    +    DV+++G +L E  SL G
Sbjct: 183 EVY---------VKKTMGRLPVRWMAIESLNYSVYTTNS----DVWSYGVLLWEIVSLGG 229
Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
               G   A L  ++          R+  P+    C  E    V  +  +C   +P  RP
Sbjct: 230 TPYCGMTCAELYEKLPQ------GYRLEKPL---NCDDE----VYDLMRQCWREKPYERP 276
Query: 719 SFEDVLWNL 727
           SF  +L +L
Sbjct: 277 SFAQILVSL 285

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 46  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 105
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 106 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 159
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 160 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 210
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 211 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 240

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 66/307 (21%)
Query: 448 MGEGSRGKLYK-------GRLENGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLV 499
           +GEG  GK+ K       GR    T VA++ L      S +++L    + L ++ HPH++
Sbjct: 31  LGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVI 89
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE---------------------N 538
            L G C + G         + L+ EY   GS R  L E                     +
Sbjct: 90  KLYGACSQDGP--------LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
             E  L   D ++    +++ + +L    +       L   NIL+ E R  K+SD+G+S 
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMKL---VHRDLAARNILVAEGRKMKISDFGLSR 198
Query: 599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SL 656
            + E +    + +G   R    ++   S  + +          + DV++FG +L E  +L
Sbjct: 199 DVYEEDSYVKRSQG---RIPVKWMAIESLFDHIYTT-------QSDVWSFGVLLWEIVTL 248
Query: 657 VGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
            G    G     L N + +        R+  P     CS+E   +++    +C   EP  
Sbjct: 249 GGNPYPGIPPERLFNLLKT------GHRMERP---DNCSEEMYRLML----QCWKQEPDK 295
Query: 717 RPSFEDV 723
           RP F D+
Sbjct: 296 RPVFADI 302

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 18  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 77
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L  +        +L+++ ++   + 
Sbjct: 78  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTSQICKGME 131
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 132 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 183 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 212

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 59/309 (19%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-Q 494
           N+      +GEG+ G++ K R++        ++  +K+Y+ ++        L+ L KL  
Sbjct: 22  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-------------NCPE 541
           HP++++LLG C   G         ++L  EY P+G+    L +             N   
Sbjct: 82  HPNIINLLGACEHRGY--------LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 133
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM 600
           + L     L     VA+ + +L        F +R L   NIL+ E+ +AK++D+G+S   
Sbjct: 134 STLSSQQLLHFAADVARGMDYLSQK----QFIHRNLAARNILVGENYVAKIADFGLSRGQ 189
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVG 658
           E +          K   G L +   + E++   V    +    DV+++G +L E  SL G
Sbjct: 190 EVY---------VKKTMGRLPVRWMAIESLNYSVYTTNS----DVWSYGVLLWEIVSLGG 236
Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
               G   A L  ++          R+  P+    C  E    V  +  +C   +P  RP
Sbjct: 237 TPYCGMTCAELYEKLPQ------GYRLEKPL---NCDDE----VYDLMRQCWREKPYERP 283
Query: 719 SFEDVLWNL 727
           SF  +L +L
Sbjct: 284 SFAQILVSL 292

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 22  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 81
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 82  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 135
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 136 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 186
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 187 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 216

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 18  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 77
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 78  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 131
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 132 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 183 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 212

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 20  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 79
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 80  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 133
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 134 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 184
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 185 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 214

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 74
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 75  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 128
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 129 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 180 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 209

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 21  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 80
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 81  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 134
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 135 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 185
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 186 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 215

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 19  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 78
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 79  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 132
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 133 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 183
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 184 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 213

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 14  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 73
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 74  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 127
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 128 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 178
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 179 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 208

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 33  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 92
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 93  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 146
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 147 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 197
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 198 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 227

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 13  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 72
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 73  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 126
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 127 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 177
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 178 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 207

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G ++ G   N   VAI+++      S ++     + + KL HP LV L G C+E
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      + LV+E++ +G    +L       +      L + + V + + +L  + 
Sbjct: 72  QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 121
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           +       L   N L+ E+++ K+SD+G++  + + +   + G     ++        S 
Sbjct: 122 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 171
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
           E    V    R   + DV++FG ++ E      V  +G+    N   S   +D     R+
Sbjct: 172 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 221
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
             P + +T        V  I N C    P  RP+F  +L  L
Sbjct: 222 YKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLLRQL 256

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 33  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 92
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 93  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 146
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 147 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 197
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 198 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 227

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 74
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 75  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 128
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 129 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 180 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 209

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G ++ G   N   VAI+++      S ++     + + KL HP LV L G C+E
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      + LV+E++ +G    +L       +      L + + V + + +L  + 
Sbjct: 77  QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 126
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           +       L   N L+ E+++ K+SD+G++  + + +   + G     ++        S 
Sbjct: 127 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 176
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
           E    V    R   + DV++FG ++ E      V  +G+    N   S   +D     R+
Sbjct: 177 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 226
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
             P + +T        V  I N C    P  RP+F  +L  L
Sbjct: 227 YKPRLAST-------HVYQIMNHCWRERPEDRPAFSRLLRQL 261

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G ++ G   N   VAI+++      S ++     + + KL HP LV L G C+E
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      + LV+E++ +G    +L       +      L + + V + + +L  + 
Sbjct: 74  QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 123
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           +       L   N L+ E+++ K+SD+G++  + + +   + G     ++        S 
Sbjct: 124 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 173
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
           E    V    R   + DV++FG ++ E      V  +G+    N   S   +D     R+
Sbjct: 174 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 223
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
             P + +T        V  I N C    P  RP+F  +L  L
Sbjct: 224 YKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLLRQL 258

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G ++ G   N   VAI+++      S  +     + + KL HP LV L G C+E
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIK-EGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      + LV+E++ +G    +L       +      L + + V + + +L  + 
Sbjct: 94  QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 143
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           +       L   N L+ E+++ K+SD+G++  + + +   + G     ++        S 
Sbjct: 144 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 193
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
           E    V    R   + DV++FG ++ E      V  +G+    N   S   +D     R+
Sbjct: 194 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 243
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
             P + +T        V  I N C    P  RP+F  +L  L
Sbjct: 244 YKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLLRQL 278

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 74
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ EY+P GS R +L ++        +L+++ ++   + 
Sbjct: 75  KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 128
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 129 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGES 179
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 180 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 209

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 41/285 (14%)
Query: 448 MGEGSRGKLYKGRLEN--GTYVAIRSLTFLKKYSIQNLKVRLD---FLSKLQHPHLVSLL 502
           +GEG  G++Y+G   N  G  + +   T  K  ++ N +  +     +  L HPH+V L+
Sbjct: 32  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 91
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E  +         +++ E  P G    +L  N  +N LK    +   + + KA+ +
Sbjct: 92  GIIEEEPT---------WIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAY 140
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
           L S          +   NIL+      KL D+G+S  +E+ +         KA    L I
Sbjct: 141 LESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY-------KASVTRLPI 190
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
              S E+    ++ +R     DV+ F   + E L      GK   F L      G  +  
Sbjct: 191 KWMSPES----INFRRFTTASDVWMFAVCMWEIL----SFGKQPFFWLENKDVIGVLEKG 242
Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
            R+  P     C      ++ ++  +C   +PS RP F +++ +L
Sbjct: 243 DRLPKP---DLCP----PVLYTLMTRCWDYDPSDRPRFTELVCSL 280

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G ++ G   N   VAI+++      S ++     + + KL HP LV L G C+E
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      + LV+E++ +G    +L       +      L + + V + + +L  + 
Sbjct: 74  QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAS 123
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           +       L   N L+ E+++ K+SD+G++  + + +   + G     ++        S 
Sbjct: 124 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 173
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
           E    V    R   + DV++FG ++ E      V  +G+    N   S   +D     R+
Sbjct: 174 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 223
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
             P + +T        V  I N C    P  RP+F  +L  L
Sbjct: 224 YKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLLRQL 258

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 41/285 (14%)
Query: 448 MGEGSRGKLYKGRLEN--GTYVAIRSLTFLKKYSIQNLKVRLD---FLSKLQHPHLVSLL 502
           +GEG  G++Y+G   N  G  + +   T  K  ++ N +  +     +  L HPH+V L+
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E  +         +++ E  P G    +L  N  +N LK    +   + + KA+ +
Sbjct: 80  GIIEEEPT---------WIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAY 128
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
           L S          +   NIL+      KL D+G+S  +E+ +         KA    L I
Sbjct: 129 LESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY-------KASVTRLPI 178
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
              S E+    ++ +R     DV+ F   + E L      GK   F L      G  +  
Sbjct: 179 KWMSPES----INFRRFTTASDVWMFAVCMWEIL----SFGKQPFFWLENKDVIGVLEKG 230
Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
            R+  P     C      ++ ++  +C   +PS RP F +++ +L
Sbjct: 231 DRLPKP---DLCP----PVLYTLMTRCWDYDPSDRPRFTELVCSL 268

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
           +GEG  G +++G     EN    VAI++       S++   ++    + +  HPH+V L+
Sbjct: 46  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 105
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E         N V+++ E    G  R+ L       V K+S  LA LI  A  +  
Sbjct: 106 GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 150
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
             + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA  G L 
Sbjct: 151 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
           I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N       ++G
Sbjct: 204 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 256
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 257 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 290

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           L  +G+G+ G +   R +      G  VA++ L    +  +++ +  ++ L  LQH ++V
Sbjct: 18  LRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 77
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
              G C  +G ++      + L+ E++P GS R +L ++        +L+++ ++   + 
Sbjct: 78  KYKGVCYSAGRRN------LKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTSQICKGME 131
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
                 ++H           L T NIL++     K+ D+G++ ++   +E  K++  GE 
Sbjct: 132 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           P     F +   +  E+   V          DV++FG +L E
Sbjct: 183 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 212

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
           +GEG  G +++G     EN    VAI++       +  +K+  + L +R     +  HPH
Sbjct: 18  IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 72
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V L+G   E         N V+++ E    G  R+ L       V K+S  LA LI  A
Sbjct: 73  IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLILYA 117
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             +    + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA 
Sbjct: 118 YQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTXX-------KAS 170
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
            G L I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N     
Sbjct: 171 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 223
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             ++G R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 224 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 262

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
           +GEG  G +++G     EN    VAI++       S++   ++    + +  HPH+V L+
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E         N V+++ E    G  R+ L       V K+S  LA LI  A  +  
Sbjct: 83  GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 127
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
             + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA  G L 
Sbjct: 128 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 180
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
           I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N       ++G
Sbjct: 181 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 233
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 234 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 267

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 41/285 (14%)
Query: 448 MGEGSRGKLYKGRLEN--GTYVAIRSLTFLKKYSIQNLKVRLD---FLSKLQHPHLVSLL 502
           +GEG  G++Y+G   N  G  + +   T  K  ++ N +  +     +  L HPH+V L+
Sbjct: 16  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 75
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E  +         +++ E  P G    +L  N  +N LK    +   + + KA+ +
Sbjct: 76  GIIEEEPT---------WIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAY 124
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
           L S          +   NIL+      KL D+G+S  +E+ +         KA    L I
Sbjct: 125 LESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY-------KASVTRLPI 174
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
              S E+    ++ +R     DV+ F   + E L      GK   F L      G  +  
Sbjct: 175 KWMSPES----INFRRFTTASDVWMFAVCMWEIL----SFGKQPFFWLENKDVIGVLEKG 226
Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
            R+  P     C      ++ ++  +C   +PS RP F +++ +L
Sbjct: 227 DRLPKP---DLCP----PVLYTLMTRCWDYDPSDRPRFTELVCSL 264

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
           +GEG  G +++G     EN    VAI++       S++   ++    + +  HPH+V L+
Sbjct: 21  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 80
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E         N V+++ E    G  R+ L       V K+S  LA LI  A  +  
Sbjct: 81  GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 125
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
             + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA  G L 
Sbjct: 126 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 178
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
           I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N       ++G
Sbjct: 179 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 231
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 232 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 265

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
           +GEG  G +++G     EN    VAI++       S++   ++    + +  HPH+V L+
Sbjct: 18  IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E         N V+++ E    G  R+ L       V K+S  LA LI  A  +  
Sbjct: 78  GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 122
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
             + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA  G L 
Sbjct: 123 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 175
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
           I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N       ++G
Sbjct: 176 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 228
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 229 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 262

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
           +GEG  G +++G     EN    VAI++       S++   ++    + +  HPH+V L+
Sbjct: 15  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 74
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E         N V+++ E    G  R+ L       V K+S  LA LI  A  +  
Sbjct: 75  GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 119
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
             + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA  G L 
Sbjct: 120 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 172
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
           I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N       ++G
Sbjct: 173 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 225
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 226 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 259

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
           +GEG  G +++G     EN    VAI++       S++   ++    + +  HPH+V L+
Sbjct: 20  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 79
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G   E         N V+++ E    G  R+ L       V K+S  LA LI  A  +  
Sbjct: 80  GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 124
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
             + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA  G L 
Sbjct: 125 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 177
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
           I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N       ++G
Sbjct: 178 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 230
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 231 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 264

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
           +GEG  G +++G     EN    VAI++       +  +K+  + L +R     +  HPH
Sbjct: 18  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 72
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V L+G   E         N V+++ E    G  R+ L       V K+S  LA LI  A
Sbjct: 73  IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYA 117
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             +    + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA 
Sbjct: 118 YQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KAS 170
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
            G L I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N     
Sbjct: 171 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 223
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             ++G R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 224 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 262

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 73  ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 124
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++    E  +     +  +     L++    A
Sbjct: 125 I---IHRDLKSNNIFLHEDLTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 174
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 175 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 26  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 78
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 79  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 130
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 131 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 185
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 186 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 232

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 100
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 101 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 152
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++    E  +     +  +     L++    A
Sbjct: 153 I---IHRDLKSNNIFLHEDLTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 202
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 203 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 235

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 9   FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 61
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 62  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 113
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 114 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 168
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 169 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 215

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 61/294 (20%)
Query: 448 MGEGSRGKLYKGRLENGT-----YVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHP 496
           +G G  G++YKG L+  +      VAI++L      +    K R+DFL       +  H 
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK-----AGYTEKQRVDFLGEAGIMGQFSHH 106
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE-NVLKWSDRLAILIG 555
           +++ L G          S    + ++ EY+ NG+    L E   E +VL+    + +L G
Sbjct: 107 NIIRLEGVI--------SKYKPMMIITEYMENGALDKFLREKDGEFSVLQL---VGMLRG 155
Query: 556 VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
           +A  + +L +     ++ +R L   NIL++ + + K+SD+G+S ++E+          P+
Sbjct: 156 IAAGMKYLANM----NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD---------PE 202
Query: 615 ARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
           A Y    G + I  T+ E     +  ++     DV++FG ++ E +      G+   + L
Sbjct: 203 ATYTTSGGKIPIRWTAPE----AISYRKFTSASDVWSFGIVMWEVM----TYGERPYWEL 254
Query: 671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
           +      + +   R+  P+       +  S +  +  +C   E + RP F D++
Sbjct: 255 SNHEVMKAINDGFRLPTPM-------DCPSAIYQLMMQCWQQERARRPKFADIV 301

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 36  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 92
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 93  ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 144
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++    E  +     +  +     L++    A
Sbjct: 145 I---IHRDLKSNNIFLHEDLTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 194
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 195 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 227

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 32/231 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLTFLKKYSIQ-----NLKVRLDF 489
           K   + F+ L  +G+GS GK++  +  +G+    + ++  LKK +++       K+  D 
Sbjct: 20  KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 79
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           L ++ HP +V L       G        K++L+ +++  G     LS+   E +    D 
Sbjct: 80  LVEVNHPFIVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDV 128
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
              L  +A A+  LHS    G     L   NILLDE    KL+D+G+S    +HEK    
Sbjct: 129 KFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK---- 181
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
               KA Y F   C T       VV+ +      D ++FG ++ E L G +
Sbjct: 182 ----KA-YSF---CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 224

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G ++ G   N   VAI+++      S ++     + + KL HP LV L G C+E
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      + LV E++ +G    +L       +      L + + V + + +L  + 
Sbjct: 75  QAP--------ICLVTEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 124
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           +       L   N L+ E+++ K+SD+G++  + + +   + G     ++        S 
Sbjct: 125 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 174
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
           E    V    R   + DV++FG ++ E      V  +G+    N   S   +D     R+
Sbjct: 175 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 224
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
             P + +T        V  I N C    P  RP+F  +L  L
Sbjct: 225 YKPRLAST-------HVYQIMNHCWRERPEDRPAFSRLLRQL 259

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 32/231 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLTFLKKYSIQ-----NLKVRLDF 489
           K   + F+ L  +G+GS GK++  +  +G+    + ++  LKK +++       K+  D 
Sbjct: 21  KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 80
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           L ++ HP +V L       G        K++L+ +++  G     LS+   E +    D 
Sbjct: 81  LVEVNHPFIVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDV 129
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
              L  +A A+  LHS    G     L   NILLDE    KL+D+G+S    +HEK    
Sbjct: 130 KFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK---- 182
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
               KA Y F   C T       VV+ +      D ++FG ++ E L G +
Sbjct: 183 ----KA-YSF---CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 225

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 32/231 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLTFLKKYSIQ-----NLKVRLDF 489
           K   + F+ L  +G+GS GK++  +  +G+    + ++  LKK +++       K+  D 
Sbjct: 20  KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 79
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           L ++ HP +V L       G        K++L+ +++  G     LS+   E +    D 
Sbjct: 80  LVEVNHPFIVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDV 128
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
              L  +A A+  LHS    G     L   NILLDE    KL+D+G+S    +HEK    
Sbjct: 129 KFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK---- 181
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
               KA Y F   C T       VV+ +      D ++FG ++ E L G +
Sbjct: 182 ----KA-YSF---CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 224

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 38/275 (13%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++ G     T VAI++L      S ++       + KL+H  LV L     E
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLK-PGTMSPESFLEEAQIMKKLKHDKLVQLYAVVSE 75
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                      +++V EY+  GS    L +     +     +L  L+ +A  V    + +
Sbjct: 76  E---------PIYIVTEYMNKGSLLDFLKDGEGRAL-----KLPNLVDMAAQVAAGMAYI 121
Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
              ++ +R L + NIL+    I K++D+G++ ++E++E          AR G  F  + +
Sbjct: 122 ERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEX--------TARQGAKFPIKWT 173
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIV 686
           A    +     R  ++ DV++FG +L E +    V   G   + N       + G R   
Sbjct: 174 APEAALY---GRFTIKSDVWSFGILLTELVTKGRVPYPG---MNNREVLEQVERGYR--- 224
Query: 687 DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
                  C Q+    +  +   C   +P  RP+FE
Sbjct: 225 -----MPCPQDCPISLHELMIHCWKKDPEERPTFE 254

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 21  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 77
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 78  ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 129
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++ +     +     +  +     L++    A
Sbjct: 130 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 179
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 180 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 212

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 73  ------STAPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 124
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++ +     +     +  +     L++    A
Sbjct: 125 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 174
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 175 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 43  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 99
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 100 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 151
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++ +     +     +  +     L++    A
Sbjct: 152 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 201
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 202 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 234

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 59/312 (18%)
Query: 422 QGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT------- 473
           QGSP Y  + +E       +      +G G  G++Y+G  +  +  VA+++L        
Sbjct: 13  QGSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE 67
Query: 474 -FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR 532
            FLK+ ++         + +++HP+LV LLG C        +     +++ E++  G+  
Sbjct: 68  EFLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIITEFMTYGNLL 110
Query: 533 AHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKL 591
            +L E C    +     L +   ++ A+ +L       +F +R L   N L+ E+ + K+
Sbjct: 111 DYLRE-CNRQEVNAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKV 165
Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
           +D+G+S +M         G+   A  G  F  + +A   +      +  ++ DV+ FG +
Sbjct: 166 ADFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVL 214
Query: 652 LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
           L E     +    G    L+++     +D R    +      C ++    V  +   C  
Sbjct: 215 LWEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQ 263
Query: 712 PEPSSRPSFEDV 723
             PS RPSF ++
Sbjct: 264 WNPSDRPSFAEI 275

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
           +GEG  G +++G     EN    VAI++       +  +K+  + L +R     +  HPH
Sbjct: 18  IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 72
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V L+G   E         N V+++ E    G  R+ L       V K+S  LA LI  A
Sbjct: 73  IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLILYA 117
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             +    + + S  F +R +   N+L+      KL D+G+S  ME+           KA 
Sbjct: 118 YQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYY-------KAS 170
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
            G L I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N     
Sbjct: 171 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 223
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             ++G R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 224 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 262

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 36  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 88
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 89  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 140
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 141 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 195
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 196 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 242

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 73  ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 124
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++ +     +     +  +     L++    A
Sbjct: 125 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 174
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 175 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
           +GEG  G +++G     EN    VAI++       +  +K+  + L +R     +  HPH
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 452
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V L+G   E         N V+++ E    G  R+ L       V K+S  LA LI  A
Sbjct: 453 IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLILYA 497
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             +    + + S  F +R +   N+L+  +   KL D+G+S  ME+           KA 
Sbjct: 498 YQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KAS 550
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
            G L I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N     
Sbjct: 551 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 603
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             ++G R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 604 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 642

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G+G+ GK+YK +  E G   A + +    +  +++  V ++ L+   HP++V LLG   
Sbjct: 19  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 78
Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
             G        K++++ E+ P G+  A + E   +  L       +   + +A++FLHS 
Sbjct: 79  HDG--------KLWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVVCRQMLEALNFLHSK 128
Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            I       L   N+L+      +L+D+G+S
Sbjct: 129 RI---IHRDLKAGNVLMTLEGDIRLADFGVS 156

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 100
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 101 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 152
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++ +     +     +  +     L++    A
Sbjct: 153 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 202
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 203 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 235

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 21  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 77
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 78  ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 129
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++ +     +     +  +     L++    A
Sbjct: 130 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 179
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 180 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 212

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++  +G+   
Sbjct: 18  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 74
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 S   ++ +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 75  ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 126
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       L +NNI L E    K+ D+G++ +     +     +  +     L++    A
Sbjct: 127 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 176
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY FG +L E + G +
Sbjct: 177 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 209

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GFVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 35/279 (12%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS--IQNLKVRLDFLSKLQHPHLVSLLGHC 505
           +G GS G +++    +G+ VA++ L     ++  +      +  + +L+HP++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS 565
            +  +        + +V EY+  GS    L ++     L    RL++   VAK +++LH+
Sbjct: 104 TQPPN--------LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN 155
Query: 566 SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRT 625
                   N L + N+L+D+    K+ D+G+S  ++    L +K       +    + R 
Sbjct: 156 RNPPIVHRN-LKSPNLLVDKKYTVKVCDFGLS-RLKASTFLSSKSAAGTPEWMAPEVLRD 213
Query: 626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRI 685
              N            + DVY+FG IL E  +  +    G       +A+ G +  R  I
Sbjct: 214 EPSNE-----------KSDVYSFGVILWE--LATLQQPWGNLNPAQVVAAVGFKCKRLEI 260
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             P  L          V +I   C   EP  RPSF  ++
Sbjct: 261 --PRNLNPQ-------VAAIIEGCWTNEPWKRPSFATIM 290

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLY----KGRLENGTYVAIRSL--TFLKKYSIQNLKVRLDF 489
           K   ++F+ L  +G+GS GK++      R ++G   A++ L    LK       K+  D 
Sbjct: 24  KADPSHFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDI 83
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           L+ + HP +V L       G        K++L+ +++  G     LS+   E +    D 
Sbjct: 84  LADVNHPFVVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDV 132
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
              L  +A  +  LHS    G     L   NILLDE    KL+D+G+S    +HEK    
Sbjct: 133 KFYLAELALGLDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEK---- 185
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
               KA Y F   C T       VV+ Q      D +++G ++ E L G +
Sbjct: 186 ----KA-YSF---CGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSL 228

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 118/292 (40%), Gaps = 45/292 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDF------LSKLQHPHLVSL 501
           +GEG+ GK++     N +    + L  +K      L  R DF      L+ LQH H+V  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL---------KWSDRLAI 552
            G C         + + + +V+EY+ +G     L  + P+ ++         K    L+ 
Sbjct: 83  YGVC--------GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ 134
Query: 553 LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
           ++ +A  +      + S  F +R L T N L+  + + K+ D+G+S  +   +     G 
Sbjct: 135 MLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGG- 193
Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN 671
                +  L I     E+++     ++   E DV++FG IL E        GK   F L+
Sbjct: 194 -----HTMLPIRWMPPESIM----YRKFTTESDVWSFGVILWEIF----TYGKQPWFQLS 240
Query: 672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
                      R +  P V   C +E   +++     C   EP  R + +++
Sbjct: 241 NTEVIECITQGRVLERPRV---CPKEVYDVMLG----CWQREPQQRLNIKEI 285

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G+G+ GK+YK +  E G   A + +    +  +++  V ++ L+   HP++V LLG   
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 86
Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
             G        K++++ E+ P G+  A + E   +  L       +   + +A++FLHS 
Sbjct: 87  HDG--------KLWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVVCRQMLEALNFLHSK 136
Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            I       L   N+L+      +L+D+G+S
Sbjct: 137 RI---IHRDLKAGNVLMTLEGDIRLADFGVS 164

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 117 LSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
           L+ LE LD+S N    ++ P+    L RL TL +D     +  P  +  L+ L  L L+ 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
           N L+     +   +  LT + +  N +S  +P+  A   LH LD                
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE-RAFRGLHSLD---------------- 180
Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              +LL +N  +   P  F +L +L  L L  N+LS +P   L  L  + YL L  N
Sbjct: 181 --RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++ G   N T VA+++L      S+Q      + +  LQH  LV L      
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVV-- 77
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 +    ++++ EY+  GS    L  +    VL     L  LI  +  +    + +
Sbjct: 78  ------TREEPIYIITEYMAKGSLLDFLKSDEGGKVL-----LPKLIDFSAQIAEGMAYI 126
Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
              ++ +R L   N+L+ E  + K++D+G++ ++E++E          AR G  F  + +
Sbjct: 127 ERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY--------TAREGAKFPIKWT 178
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLE 654
           A      ++     ++ DV++FG +L E
Sbjct: 179 APE---AINFGCFTIKSDVWSFGILLYE 203

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 126/304 (41%), Gaps = 40/304 (13%)
Query: 420 GTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS 479
           G+Q     + ++ +E +        +  +G G  G+++ G     T VA++SL      S
Sbjct: 1   GSQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMS 59
Query: 480 IQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
                   + + +LQH  LV L     +           ++++ EY+ NGS    L    
Sbjct: 60  PDAFLAEANLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KT 108
Query: 540 PENV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           P  + L  +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++
Sbjct: 109 PSGIKLTINKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLA 164
Query: 598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV 657
            ++E++E          AR G  F  + +A      ++     ++ DV++FG +L E + 
Sbjct: 165 RLIEDNEX--------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVT 213
Query: 658 GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR 717
              +   G   + N       + G  R+V P     C +E    +  +   C    P  R
Sbjct: 214 HGRIPYPG---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDR 262
Query: 718 PSFE 721
           P+F+
Sbjct: 263 PTFD 266

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 117 LSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
           L+ LE LD+S N    ++ P+    L RL TL +D     +  P  +  L+ L  L L+ 
Sbjct: 78  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
           N L+     +   +  LT + +  N +S  +P+  A   LH LD                
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE-RAFRGLHSLD---------------- 179
Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              +LL +N  +   P  F +L +L  L L  N+LS +P   L  L  + YL L  N
Sbjct: 180 --RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo Form) Length = 289

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 125/298 (41%), Gaps = 61/298 (20%)
Query: 448 MGEGSRGKLYKG-RLENGTYVAIRSLTFLKK--------YSIQNLKVRLDFLSKLQHPHL 498
           +G+G+  K++KG R E G Y  +     L K        YS ++       +SKL H HL
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYS-ESFFEAASMMSKLSHKHL 74
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V   G C+  G ++        LV E++  GS   +L +N  +N +    +L +   +A 
Sbjct: 75  VLNYGVCV-CGDEN-------ILVQEFVKFGSLDTYLKKN--KNCINILWKLEVAKQLAA 124
Query: 559 AVHFLH-SSVISGSFSNRLTTNNILL--DEHR------IAKLSDYGISIIMEEHEKLEAK 609
           A+HFL  +++I G+    +   NILL  +E R        KLSD GISI +   + L+ +
Sbjct: 125 AMHFLEENTLIHGN----VCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQER 180
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL 669
                      ++     EN       +   L  D ++FG  L E   G    G      
Sbjct: 181 ---------IPWVPPECIENP------KNLNLATDKWSFGTTLWEICSG----GDKPLSA 221
Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
           L+        + R ++  P           + + ++ N C+  EP  RPSF  ++ +L
Sbjct: 222 LDSQRKLQFYEDRHQLPAP---------KAAELANLINNCMDYEPDHRPSFRAIIRDL 270

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G++ ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLARVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
           +GEG  G +++G     EN    VAI++       +  +K+  + L +R     +  HPH
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 452
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V L+G   E         N V+++ E    G  R+ L       V K+S  LA LI  A
Sbjct: 453 IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLILYA 497
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             +    + + S  F +R +   N+L+      KL D+G+S  ME+           KA 
Sbjct: 498 YQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYY-------KAS 550
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
            G L I   + E+    ++ +R     DV+ FG  + E L+  +   +G   + N     
Sbjct: 551 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 603
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             ++G R  + P    T        + S+  KC   +PS RP F ++
Sbjct: 604 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 642

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL------TFLKKYSIQNLKVRLDFLSK 492
             ++ +  +GEGS G ++K R  + G  VAI+          +KK +++ +++    L +
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRM----LKQ 58
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA--HLSENCPENVLKWSDRL 550
           L+HP+LV+LL        +      ++ LV+EY  +             PE+++K     
Sbjct: 59  LKHPNLVNLL--------EVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVK----- 105
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
           +I     +AV+F H           +   NIL+ +H + KL D+G + ++          
Sbjct: 106 SITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLL---------- 152
Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEA 667
            GP   Y      R      ++V D Q      DV+  G +  E L G P+  GK + 
Sbjct: 153 TGPSDYYDDEVATRWYRSPELLVGDTQYGP-PVDVWAIGCVFAELLSGVPLWPGKSDV 209

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 32/177 (18%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVA--------IRSLTFLKKY--SIQNLKVRLDFLSKLQHP 496
           +G G+ GK+  G+ E  G  VA        IRSL  + K    IQNLK+        +HP
Sbjct: 24  LGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKL-------FRHP 76
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
           H++ L         Q  S  + +F+V EY+  G    ++   C    L   +   +   +
Sbjct: 77  HIIKLY--------QVISTPSDIFMVMEYVSGGELFDYI---CKNGRLDEKESRRLFQQI 125
Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
              V + H  ++       L   N+LLD H  AK++D+G+S +M + E L      P
Sbjct: 126 LSGVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRXSCGSP 179

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           + +L++LE L  ++N +    P GI  L  L  L+++ N   D       SL+NLT L L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 245
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
            +NQ+    P  +  +  LT++ +  N++S   P ++ LT+L  L+L EN+L+   P+  
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 302
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            K L  + L  N  S   P     L +LQ L  S N +S +  S L +L NI++L    N
Sbjct: 303 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHN 358
Query: 293 MLSGTLP 299
            +S   P
Sbjct: 359 QISDLTP 365

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           + +L++LE L  ++N +    P GI  L  L  L+++ N   D       SL+NLT L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 246
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
            +NQ+    P  +  +  LT++ +  N++S   P ++ LT+L  L+L EN+L+   P+  
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 303
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            K L  + L  N  S   P     L +LQ L  S N +S +  S L +L NI++L    N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 293 MLSGTLP 299
            +S   P
Sbjct: 360 QISDLTP 366

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V EY+ NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+  ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V E + NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G+    L   NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GAVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 37/280 (13%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS--IQNLKVRLDFLSKLQHPHLVSLLGHC 505
           +G GS G +++    +G+ VA++ L     ++  +      +  + +L+HP++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS 565
            +  +        + +V EY+  GS    L ++     L    RL++   VAK +++LH+
Sbjct: 104 TQPPN--------LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN 155
Query: 566 SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICR 624
              +    +R L + N+L+D+    K+ D+G+S  ++    L +K       +    + R
Sbjct: 156 R--NPPIVHRDLKSPNLLVDKKYTVKVCDFGLS-RLKASXFLXSKXAAGTPEWMAPEVLR 212
Query: 625 TSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRR 684
               N            + DVY+FG IL E  +  +    G       +A+ G +  R  
Sbjct: 213 DEPSNE-----------KSDVYSFGVILWE--LATLQQPWGNLNPAQVVAAVGFKCKRLE 259
Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
           I  P  L          V +I   C   EP  RPSF  ++
Sbjct: 260 I--PRNLNPQ-------VAAIIEGCWTNEPWKRPSFATIM 290

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 122/310 (39%), Gaps = 62/310 (20%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR------LENGTYVAIRSLTFLKKYSIQ-NLKVRLDFLSK 492
           NN + +  +GEG+ G++++ R       E  T VA++ L       +Q + +     +++
Sbjct: 47  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 106
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV--------- 543
             +P++V LLG C        +    + L++EY+  G     L    P  V         
Sbjct: 107 FDNPNIVKLLGVC--------AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS 158
Query: 544 ------------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAK 590
                       L  +++L I   VA  + +L        F +R L T N L+ E+ + K
Sbjct: 159 TRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER----KFVHRDLATRNCLVGENMVVK 214
Query: 591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF 650
           ++D+G+S  +   +  +A G         + I     E++       R   E DV+ +G 
Sbjct: 215 IADFGLSRNIYSADYYKADGNDA------IPIRWMPPESIF----YNRYTTESDVWAYGV 264
Query: 651 ILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCI 710
           +L E     +    G A   +E   +  +DG         +  C +     + ++   C 
Sbjct: 265 VLWEIFSYGLQPYYGMA---HEEVIYYVRDGN--------ILACPENCPLELYNLMRLCW 313
Query: 711 CPEPSSRPSF 720
              P+ RPSF
Sbjct: 314 SKLPADRPSF 323

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 59/311 (18%)
Query: 423 GSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT-------- 473
           GSP Y  + +E       +      +G G  G++Y+G  +  +  VA+++L         
Sbjct: 1   GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE 55
Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
           FLK+ ++         + +++HP+LV LLG C        +     +++ E++  G+   
Sbjct: 56  FLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIIIEFMTYGNLLD 98
Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLS 592
           +L E C    +     L +   ++ A+ +L       +F +R L   N L+ E+ + K++
Sbjct: 99  YLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKVA 153
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
           D+G+S +M         G+   A  G  F  + +A   +      +  ++ DV+ FG +L
Sbjct: 154 DFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLL 202
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
            E     +    G    L+++     +D R    +      C ++    V  +   C   
Sbjct: 203 WEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQW 251
Query: 713 EPSSRPSFEDV 723
            PS RPSF ++
Sbjct: 252 NPSDRPSFAEI 262

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 77  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTXTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 176 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 59/311 (18%)
Query: 423 GSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT-------- 473
           GSP Y  + +E       +      +G G  G++Y+G  +  +  VA+++L         
Sbjct: 1   GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE 55
Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
           FLK+ ++         + +++HP+LV LLG C        +     +++ E++  G+   
Sbjct: 56  FLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIIIEFMTYGNLLD 98
Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLS 592
           +L E C    +     L +   ++ A+ +L       +F +R L   N L+ E+ + K++
Sbjct: 99  YLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKVA 153
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
           D+G+S +M         G+   A  G  F  + +A   +      +  ++ DV+ FG +L
Sbjct: 154 DFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLL 202
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
            E     +    G    L+++     +D R    +      C ++    V  +   C   
Sbjct: 203 WEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQW 251
Query: 713 EPSSRPSFEDV 723
            PS RPSF ++
Sbjct: 252 NPSDRPSFAEI 262

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 72
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 73  VQLLGVC--------TREPPFYIIIEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 123
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 124 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTXTAHA 171
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 172 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 226
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 227 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 263

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 59/311 (18%)
Query: 423 GSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT-------- 473
           GSP Y  + +E       +      +G G  G++Y+G  +  +  VA+++L         
Sbjct: 1   GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE 55
Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
           FLK+ ++         + +++HP+LV LLG C        +     +++ E++  G+   
Sbjct: 56  FLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIITEFMTYGNLLD 98
Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLS 592
           +L E C    +     L +   ++ A+ +L       +F +R L   N L+ E+ + K++
Sbjct: 99  YLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKVA 153
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
           D+G+S +M         G+   A  G  F  + +A   +      +  ++ DV+ FG +L
Sbjct: 154 DFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLL 202
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
            E     +    G    L+++     +D R    +      C ++    V  +   C   
Sbjct: 203 WEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQW 251
Query: 713 EPSSRPSFEDV 723
            PS RPSF ++
Sbjct: 252 NPSDRPSFAEI 262

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 59/311 (18%)
Query: 423 GSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT-------- 473
           GSP Y  + +E       +      +G G  G++Y+G  +  +  VA+++L         
Sbjct: 1   GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE 55
Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
           FLK+ ++         + +++HP+LV LLG C        +     +++ E++  G+   
Sbjct: 56  FLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIITEFMTYGNLLD 98
Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLS 592
           +L E C    +     L +   ++ A+ +L       +F +R L   N L+ E+ + K++
Sbjct: 99  YLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKVA 153
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
           D+G+S +M         G+   A  G  F  + +A   +      +  ++ DV+ FG +L
Sbjct: 154 DFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLL 202
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
            E     +    G    L+++     +D R    +      C ++    V  +   C   
Sbjct: 203 WEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQW 251
Query: 713 EPSSRPSFEDV 723
            PS RPSF ++
Sbjct: 252 NPSDRPSFAEI 262

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 43/217 (19%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 40  LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 90
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     ++V EY+P G+   +L E   E V        +L+ +A 
Sbjct: 91  VQLLGVC--------TLEPPFYIVTEYMPYGNLLDYLRECNREEVTA-----VVLLYMAT 137
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
            +      +   +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 138 QISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLM--------TGDTYTAHA 189
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           G  F  + +A   +         ++ DV+ FG +L E
Sbjct: 190 GAKFPIKWTAPESLA---YNTFSIKSDVWAFGVLLWE 223

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 47/224 (20%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  GRL+        VAI++L      +    K R DFLS      +  HP+
Sbjct: 16  IGVGEFGEVCSGRLKVPGKREICVAIKTLK-----AGYTDKQRRDFLSEASIMGQFDHPN 70
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          +    V ++ EY+ NGS  A L +N  +        + +L G+ 
Sbjct: 71  IIHLEGVV--------TKCKPVMIITEYMENGSLDAFLRKN--DGRFTVIQLVGMLRGIG 120
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             + +L       S+ +R L   NIL++ + + K+SD+G+S ++E+          P+A 
Sbjct: 121 SGMKYLSDM----SYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD---------PEAA 167
Query: 617 Y----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           Y    G + I  T+ E +      ++     DV+++G ++ E +
Sbjct: 168 YTTRGGKIPIRWTAPEAIA----YRKFTSASDVWSYGIVMWEVM 207

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 77  VQLLGVC--------TREPPFYIIIEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 176 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 26/188 (13%)
Query: 420 GTQGSPAYRTFYL----EELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF 474
           G+ GS   +T YL    +  +   N+ ++L  MG G+ G+++K R  + G  +A++ +  
Sbjct: 1   GSSGSSGKQTGYLTIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRR 60
Query: 475 LKKYSIQNLKVRLDF---LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS- 530
                 +N ++ +D    L     P++V   G  I       +NT+ VF+  E +   + 
Sbjct: 61  SGNKE-ENKRILMDLDVVLKSHDCPYIVQCFGTFI-------TNTD-VFIAMELMGTCAE 111
Query: 531 -YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIA 589
             +  +    PE +L       + + + KA+++L      G     +  +NILLDE    
Sbjct: 112 KLKKRMQGPIPERILG-----KMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQI 164
Query: 590 KLSDYGIS 597
           KL D+GIS
Sbjct: 165 KLCDFGIS 172

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 9   FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 61
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V E + NGS  + L ++  
Sbjct: 62  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDA 113
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 114 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 168
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 169 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 215

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 47/224 (20%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  GRL+        VAI++L      +    K R DFLS      +  HP+
Sbjct: 22  IGVGEFGEVCSGRLKVPGKREICVAIKTLK-----AGYTDKQRRDFLSEASIMGQFDHPN 76
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          +    V ++ EY+ NGS  A L +N  +        + +L G+ 
Sbjct: 77  IIHLEGVV--------TKCKPVMIITEYMENGSLDAFLRKN--DGRFTVIQLVGMLRGIG 126
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             + +L       S+ +R L   NIL++ + + K+SD+G+S ++E+          P+A 
Sbjct: 127 SGMKYLSDM----SYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD---------PEAA 173
Query: 617 Y----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           Y    G + I  T+ E +      ++     DV+++G ++ E +
Sbjct: 174 YTTRGGKIPIRWTAPEAIA----YRKFTSASDVWSYGIVMWEVM 213

>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant V617f (Mg- Atp-Bound Form) Length = 289

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 124/298 (41%), Gaps = 61/298 (20%)
Query: 448 MGEGSRGKLYKG-RLENGTYVAIRSLTFLKK--------YSIQNLKVRLDFLSKLQHPHL 498
           +G+G+  K++KG R E G Y  +     L K        YS ++       +SKL H HL
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYS-ESFFEAASMMSKLSHKHL 74
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V   G C   G ++        LV E++  GS   +L +N  +N +    +L +   +A 
Sbjct: 75  VLNYGVCF-CGDEN-------ILVQEFVKFGSLDTYLKKN--KNCINILWKLEVAKQLAW 124
Query: 559 AVHFLH-SSVISGSFSNRLTTNNILL--DEHR------IAKLSDYGISIIMEEHEKLEAK 609
           A+HFL  +++I G+    +   NILL  +E R        KLSD GISI +   + L+ +
Sbjct: 125 AMHFLEENTLIHGN----VCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQER 180
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL 669
                        C  + +N+          L  D ++FG  L E   G    G      
Sbjct: 181 IPWVPPE------CIENPKNL---------NLATDKWSFGTTLWEICSG----GDKPLSA 221
Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
           L+        + R ++  P           + + ++ N C+  EP  RPSF  ++ +L
Sbjct: 222 LDSQRKLQFYEDRHQLPAP---------KAAELANLINNCMDYEPDHRPSFRAIIRDL 270

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           + +L++LE L  ++N +    P GI  L  L  L+++ N   D       SL+NLT L L
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 249
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
            +NQ+    P  +  +  LT++ +  N++S   P ++ LT+L  L+L EN+L+   P+  
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 306
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            K L  + L  N  S   P     L +LQ L  + N +S +  S L +L NI++L    N
Sbjct: 307 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHN 362
Query: 293 MLSGTLP 299
            +S   P
Sbjct: 363 QISDLTP 369

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 77  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 176 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 25  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 75
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 76  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 126
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 127 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 174
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 175 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 229
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 230 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 266

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 52/195 (26%)
Query: 112 DKIHRLSSL-ELLDMSSNFLFG----AIPSGI-SRLVRLQTLTMDTNFFDDNVPDW-WDS 164
           +K+H +S+L EL +++   L G    ++P+G+  +L  L+ L +  N    ++PD  +D 
Sbjct: 73  NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDK 131
Query: 165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENK 224
           L+NLT L+L  NQL+   P  +                         LT+L  LDL  N+
Sbjct: 132 LTNLTYLNLAHNQLQS-LPKGV----------------------FDKLTNLTELDLSYNQ 168
Query: 225 LDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNI 284
           L S    +P+G+                 F +L QL+ L L  N L  +P  V   L ++
Sbjct: 169 LQS----LPEGV-----------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Query: 285 SYLHLASNMLSGTLP 299
            Y+ L  N    T P
Sbjct: 208 QYIWLHDNPWDCTCP 222

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 77  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 176 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 124/291 (42%), Gaps = 56/291 (19%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  GRL+        VAI++L     Y+    K R DFL       +  HP+
Sbjct: 30  IGAGEFGEVCSGRLKLPGKRELPVAIKTLKV--GYT---EKQRRDFLGEASIMGQFDHPN 84
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G   +S          V +V EY+ NGS    L +N  +        + +L G++
Sbjct: 85  IIHLEGVVTKS--------KPVMIVTEYMENGSLDTFLKKN--DGQFTVIQLVGMLRGIS 134
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             + +L      G     L   NIL++ + + K+SD+G+S ++E+          P+A Y
Sbjct: 135 AGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD---------PEAAY 182
Query: 618 ----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM 673
               G + I  T+ E +      ++     DV+++G ++ E     +  G+   + +   
Sbjct: 183 TTRGGKIPIRWTAPEAIA----FRKFTSASDVWSYGIVMWEV----VSYGERPYWEMTNQ 234
Query: 674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
               + +   R+  P+    C      +++     C   E +SRP F++++
Sbjct: 235 DVIKAVEEGYRLPSPM---DCPAALYQLMLD----CWQKERNSRPKFDEIV 278

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 73
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 74  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 124
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 125 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 172
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 173 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 227
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 228 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 264

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 77  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 176 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 71
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 72  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 122
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 123 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 170
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 171 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 225
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 226 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 262

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 56/298 (18%)
Query: 448 MGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQHPHLVS 500
           +GE   GK+YKG L      E    VAI++L    +  + +  +      ++LQHP++V 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWS 547
           LLG          +    + +++ Y  +G     L    P             ++ L+  
Sbjct: 77  LLGVV--------TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 128
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI--SIIMEEHEK 605
           D + ++  +A  + +L S  +       L T N+L+ +    K+SD G+   +   ++ K
Sbjct: 129 DFVHLVAQIAAGMEYLSSHHV---VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 185
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
           L             L   R  A   ++     +  ++ D++++G +L E           
Sbjct: 186 LLGNS---------LLPIRWMAPEAIM---YGKFSIDSDIWSYGVVLWEVF--------- 224
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            ++ L     + +QD    I +  VL  C  +  + V ++  +C    PS RP F+D+
Sbjct: 225 -SYGLQPYCGYSNQDVVEMIRNRQVL-PCPDDCPAWVYALMIECWNEFPSRRPRFKDI 280

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 71
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 72  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 122
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 123 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 170
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 171 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 225
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 226 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 262

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTF----LKKYSIQNLKVR-L 487
           ++K     ++ L F+GEG    +YK R +N    VAI+ +        K  I    +R +
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63
Query: 488 DFLSKLQHPHLVSLL---GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL 544
             L +L HP+++ LL   GH            + + LV++++        + +N    VL
Sbjct: 64  KLLQELSHPNIIGLLDAFGH-----------KSNISLVFDFM-ETDLEVIIKDNS--LVL 109
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
             S   A ++   + + +LH   I       L  NN+LLDE+ + KL+D+G++
Sbjct: 110 TPSHIKAYMLMTLQGLEYLHQHWI---LHRDLKPNNLLLDENGVLKLADFGLA 159

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 45/223 (20%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  GRL+        VAI++L      +    K R DFLS      +  HP+
Sbjct: 37  IGVGEFGEVCSGRLKVPGKREICVAIKTLK-----AGYTDKQRRDFLSEASIMGQFDHPN 91
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          +    V ++ EY+ NGS  A L +N  +        + +L G+ 
Sbjct: 92  IIHLEGVV--------TKCKPVMIITEYMENGSLDAFLRKN--DGRFTVIQLVGMLRGIG 141
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             + +L       +    L   NIL++ + + K+SD+G+S ++E+          P+A Y
Sbjct: 142 SGMKYLSDM---SAVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD---------PEAAY 189
Query: 618 ----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
               G + I  T+ E +      ++     DV+++G ++ E +
Sbjct: 190 TTRGGKIPIRWTAPEAIA----YRKFTSASDVWSYGIVMWEVM 228

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 122/286 (42%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 69
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 70  VQLLGVC--------TREPPFYIIIEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 120
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 121 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTXTAHA 168
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    ++    + 
Sbjct: 169 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG----IDPSQVYE 221
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             +   R+  P     C ++    V  +   C    PS RPSF ++
Sbjct: 222 LLEKDYRMERP---EGCPEK----VYELMRACWQWNPSDRPSFAEI 260

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 278
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 279 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 329
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 330 AMEYLEKK----NFIHRNLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 377
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 378 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 432
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 433 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 469

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 73
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 74  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 124
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 125 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 172
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 173 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 227
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 228 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 264

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 117 LSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
           L+ LE LD+S N     + P+    L  L TL +D     +  P  +  L+ L  L L+ 
Sbjct: 78  LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
           N L+    ++   +  LT + +  N +   +P+  A   LH LD                
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPE-HAFRGLHSLD---------------- 179
Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              +LL +N  +   P  F +L +L  L L  N+LS +P  VL  L ++ YL L  N
Sbjct: 180 --RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
           + +EL     + D +  +G G  G++  GRL+        VAI++L     Y+    K R
Sbjct: 38  FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
            DFL       +  HP+++ L G   +S          V +V E + NGS  + L ++  
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           +  +     + +L G+A  + +L      G     L   NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           E+          P+A Y    G + I  TS E +      ++     DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 56/298 (18%)
Query: 448 MGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQHPHLVS 500
           +GE   GK+YKG L      E    VAI++L    +  + +  +      ++LQHP++V 
Sbjct: 34  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 93
Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWS 547
           LLG          +    + +++ Y  +G     L    P             ++ L+  
Sbjct: 94  LLGVV--------TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 145
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI--SIIMEEHEK 605
           D + ++  +A  + +L S  +       L T N+L+ +    K+SD G+   +   ++ K
Sbjct: 146 DFVHLVAQIAAGMEYLSSHHV---VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 202
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
           L             L   R  A   ++     +  ++ D++++G +L E           
Sbjct: 203 LLGNS---------LLPIRWMAPEAIM---YGKFSIDSDIWSYGVVLWEVF--------- 241
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            ++ L     + +QD    I +  VL  C  +  + V ++  +C    PS RP F+D+
Sbjct: 242 -SYGLQPYCGYSNQDVVEMIRNRQVL-PCPDDCPAWVYALMIECWNEFPSRRPRFKDI 297

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 20/225 (8%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +N   L  +G G  G +YKG L+    VA++  +F  + +  N K  +  +  ++H ++ 
Sbjct: 13  DNLKLLELIGRGRYGAVYKGSLDERP-VAVKVFSFANRQNFINEK-NIYRVPLMEHDNIA 70
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
             +   +           +  LV EY PNGS   +LS +  +    W     +   V + 
Sbjct: 71  RFI---VGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSD----WVSSCRLAHSVTRG 123
Query: 560 VHFLHSSVISG-----SFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
           + +LH+ +  G     + S+R L + N+L+       +SD+G+S+ +  + +L   GE  
Sbjct: 124 LAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGN-RLVRPGEED 182
Query: 614 KARYGFLFICRTSA----ENVVIVVDIQRTKLEDDVYNFGFILLE 654
            A    +   R  A    E  V + D +    + D+Y  G I  E
Sbjct: 183 NAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWE 227

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 72
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 73  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 123
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 124 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAPA 171
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 172 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 226
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 227 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 263

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 97  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 156
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + F
Sbjct: 157 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 207
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E  ++      A+    +
Sbjct: 208 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 262
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 263 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 312
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 313 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 347

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 32/177 (18%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTFLK----------KYSIQNLKVRLDFLSKLQHP 496
           +G G+ GK+  G  +  G  VA++ L   K          K  IQNLK+        +HP
Sbjct: 19  LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL-------FRHP 71
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
           H++ L         Q  S     F+V EY+  G    ++   C    ++  +   +   +
Sbjct: 72  HIIKLY--------QVISTPTDFFMVMEYVSGGELFDYI---CKHGRVEEMEARRLFQQI 120
Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
             AV + H  ++       L   N+LLD H  AK++D+G+S +M + E L      P
Sbjct: 121 LSAVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSP 174

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 43/250 (17%)
Query: 411 RLISQAVKLGTQGSPA--YRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVA 468
           RLI   V  GT  +    YR+ +   +KE       L  +G+G  G +  G    G  VA
Sbjct: 166 RLIKPKVMEGTVAAQDEFYRSGWALNMKE----LKLLQTIGKGEFGDVMLGDY-RGNKVA 220
Query: 469 IRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN 528
           ++ +      + Q        +++L+H +LV LLG  +E           +++V EY+  
Sbjct: 221 VKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE-------EKGGLYIVTEYMAK 271
Query: 529 GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHR 587
           GS   +L      +VL     L   + V +A+ +L  +    +F +R L   N+L+ E  
Sbjct: 272 GSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEGN----NFVHRDLAARNVLVSEDN 326
Query: 588 IAKLSDYGISI---IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDD 644
           +AK+SD+G++      ++  KL  K   P+A                  +  ++   + D
Sbjct: 327 VAKVSDFGLTKEASSTQDTGKLPVKWTAPEA------------------LREKKFSTKSD 368
Query: 645 VYNFGFILLE 654
           V++FG +L E
Sbjct: 369 VWSFGILLWE 378

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + F
Sbjct: 98  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 148
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E  ++      A+    +
Sbjct: 149 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 204 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 253
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 254 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 288

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
           + ++ +E +        +  +G G  G+++ G     T VA++SL      S        
Sbjct: 10  KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 68
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
           + + +LQH  LV L     +           ++++ EY+ NGS    L    P  + L  
Sbjct: 69  NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPSGIKLTI 117
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ ++E++E 
Sbjct: 118 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 173
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                    AR G  F  + +A      ++     ++ DV++FG +L E +    +   G
Sbjct: 174 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 222
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
              + N       + G  R+V P     C +E    +  +   C    P  RP+F+
Sbjct: 223 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 267

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 317
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 318 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 368
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 369 AMEYLEKK----NFIHRNLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 416
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 417 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 471
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 472 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 508

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + F
Sbjct: 98  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 148
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E  ++      A+    +
Sbjct: 149 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 204 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 253
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 254 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 288

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 43  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 102
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + F
Sbjct: 103 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 153
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E  ++      A+    +
Sbjct: 154 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 208
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 209 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 258
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 259 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 293

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 36  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 95
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + F
Sbjct: 96  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 146
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E  ++      A+    +
Sbjct: 147 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 201
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 202 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 251
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 252 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 286

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ 494
           K+    FD L  +GEGS G +YK    E G  VAI+ +    +  +Q +   +  + +  
Sbjct: 25  KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV--ESDLQEIIKEISIMQQCD 82
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
            PH+V   G   +       NT+ +++V EY   GS    +        L   +   IL 
Sbjct: 83  SPHVVKYYGSYFK-------NTD-LWIVMEYCGAGSVSDII--RLRNKTLTEDEIATILQ 132
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
              K + +LH           +   NILL+    AKL+D+G++
Sbjct: 133 STLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVA 172

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           + +L++LE L  ++N +    P GI  L  L  L+++ N   D       SL+NLT L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 246
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
            +NQ+    P  +  +  LT++ +  N++S   P ++ LT+L  L+L EN+L+   P+  
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 303
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            K L  + L  N  S   P     L +LQ L    N +S +  S L +L NI++L    N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 293 MLSGTLP 299
            +S   P
Sbjct: 360 QISDLTP 366

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 73
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 74  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 124
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 125 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAPA 172
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    L+++    
Sbjct: 173 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 227
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            +D R    +      C ++    V  +   C    PS RPSF ++
Sbjct: 228 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 264

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 39  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 98
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + F
Sbjct: 99  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 149
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E  ++      A+    +
Sbjct: 150 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 204
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 205 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 254
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 255 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 289

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           + +L++LE L  ++N +    P GI  L  L  L+++ N   D       SL+NLT L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 246
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
            +NQ+    P  +  +  LT++ +  N++S   P ++ LT+L  L+L EN+L+   P+  
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 303
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            K L  + L  N  S   P     L +LQ L    N +S +  S L +L NI++L    N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 293 MLSGTLP 299
            +S   P
Sbjct: 360 QISDLTP 366

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 40/302 (13%)
Query: 422 QGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQ 481
           Q     + ++ +E +        +  +G G  G+++ G     T VA++SL      S  
Sbjct: 1   QTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPD 59
Query: 482 NLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE 541
                 + + +LQH  LV L     +           ++++ EY+ NGS    L    P 
Sbjct: 60  AFLAEANLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPS 108
Query: 542 NV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
            + L  +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ +
Sbjct: 109 GIKLTINKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARL 164
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +E++E          AR G  F  + +A      ++     ++ DV++FG +L E +   
Sbjct: 165 IEDNEX--------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHG 213
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
            +   G   + N       + G  R+V P     C +E    +  +   C    P  RP+
Sbjct: 214 RIPYPG---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPT 262
Query: 720 FE 721
           F+
Sbjct: 263 FD 264

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           + +L++LE L  ++N +    P GI  L  L  L+++ N   D       SL+NLT L L
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 250
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
            +NQ+    P  +  +  LT++ +  N++S   P ++ LT+L  L+L EN+L+   P+  
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 307
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            K L  + L  N  S   P     L +LQ L    N +S +  S L +L NI++L    N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363
Query: 293 MLSGTLP 299
            +S   P
Sbjct: 364 QISDLTP 370

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 122/286 (42%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 19  LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 69
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 70  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 120
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 121 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTXTAHA 168
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    ++    + 
Sbjct: 169 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG----IDPSQVYE 221
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             +   R+  P     C ++    V  +   C    PS RPSF ++
Sbjct: 222 LLEKDYRMERP---EGCPEK----VYELMRACWQWNPSDRPSFAEI 260

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 32/171 (18%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTFLK----------KYSIQNLKVRLDFLSKLQHP 496
           +G G+ GK+  G  +  G  VA++ L   K          K  IQNLK+        +HP
Sbjct: 19  LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL-------FRHP 71
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
           H++ L         Q  S     F+V EY+  G    ++   C    ++  +   +   +
Sbjct: 72  HIIKLY--------QVISTPTDFFMVMEYVSGGELFDYI---CKHGRVEEMEARRLFQQI 120
Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
             AV + H  ++       L   N+LLD H  AK++D+G+S +M + E L 
Sbjct: 121 LSAVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR 168

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
           + ++ +E +        +  +G G  G+++ G     T VA++SL      S        
Sbjct: 3   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 61
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
           + + +LQH  LV L     +           ++++ EY+ NGS    L    P  + L  
Sbjct: 62  NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFLK--TPSGIKLTI 110
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ ++E++E 
Sbjct: 111 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 166
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                    AR G  F  + +A      ++     ++ DV++FG +L E +    +   G
Sbjct: 167 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 215
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
              + N       + G  R+V P     C +E    +  +   C    P  RP+F+
Sbjct: 216 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 260

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGR-LEN-GTYVAIRSLTF------LKKYSIQNLKVR 486
           L  A   ++ ++ +GEG+ GK++K R L+N G +VA++ +        +   +I+ + V 
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV- 64
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG--SYRAHLSE-NCPENV 543
           L  L   +HP++V L   C  + S+ D  T K+ LV+E++     +Y   + E   P   
Sbjct: 65  LRHLETFEHPNVVRLFDVC--TVSRTDRET-KLTLVFEHVDQDLTTYLDKVPEPGVPTET 121
Query: 544 LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
           +K      ++  + + + FLHS  +       L   NIL+      KL+D+G++ I
Sbjct: 122 IK-----DMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARI 169

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
           + ++ +E +        +  +G G  G+++ G     T VA++SL      S        
Sbjct: 1   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 59
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
           + + +LQH  LV L     +           ++++ EY+ NGS    L    P  + L  
Sbjct: 60  NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPSGIKLTI 108
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ ++E++E 
Sbjct: 109 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 164
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                    AR G  F  + +A      ++     ++ DV++FG +L E +    +   G
Sbjct: 165 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 213
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
              + N       + G  R+V P     C +E    +  +   C    P  RP+F+
Sbjct: 214 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 258

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           + +L++LE L  ++N +    P GI  L  L  L+++ N   D       SL+NLT L L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 245
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
            +NQ+    P  +  +  LT++ +  N++S   P ++ LT+L  L+L EN+L+   P+  
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 302
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            K L  + L  N  S   P     L +LQ L    N +S +  S L +L NI++L    N
Sbjct: 303 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 358
Query: 293 MLSGTLP 299
            +S   P
Sbjct: 359 QISDLTP 365

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++ G   N T VA+++L      S+Q      + +  LQH  LV L      
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVV-- 76
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                 +    ++++ E++  GS    L  +    VL     L  LI  +  +    + +
Sbjct: 77  ------TKEEPIYIITEFMAKGSLLDFLKSDEGGKVL-----LPKLIDFSAQIAEGMAYI 125
Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
              ++ +R L   N+L+ E  + K++D+G++ ++E++E          AR G  F  + +
Sbjct: 126 ERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY--------TAREGAKFPIKWT 177
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLE 654
           A      ++     ++ +V++FG +L E
Sbjct: 178 APE---AINFGCFTIKSNVWSFGILLYE 202

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 40/276 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++ G     T VA++SL      S        + + +LQH  LV L     +
Sbjct: 21  LGAGQAGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSS 566
                      ++++ EY+ NGS    L    P  + L  +  L +   +A+ + F+   
Sbjct: 80  E---------PIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFIEER 128
Query: 567 VISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRT 625
               ++ +R L   NIL+ +    K++D+G++ ++E+ E          AR G  F  + 
Sbjct: 129 ----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEX--------TAREGAKFPIKW 176
Query: 626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRI 685
           +A      ++     ++ DV++FG +L E +    +   G   + N       + G  R+
Sbjct: 177 TAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG---MTNPEVIQNLERG-YRM 229
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
           V P     C +E    +  +   C    P  RP+F+
Sbjct: 230 VRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 258

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 87/173 (50%), Gaps = 17/173 (9%)
Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGR-LEN-GTYVAIRSLTF------LKKYSIQNLKVR 486
           L  A   ++ ++ +GEG+ GK++K R L+N G +VA++ +        +   +I+ + V 
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV- 64
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKW 546
           L  L   +HP++V L   C  + S+ D  T K+ LV+E++ +     +L +  PE  +  
Sbjct: 65  LRHLETFEHPNVVRLFDVC--TVSRTDRET-KLTLVFEHV-DQDLTTYL-DKVPEPGVPT 119
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
                ++  + + + FLHS  +       L   NIL+      KL+D+G++ I
Sbjct: 120 ETIKDMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARI 169

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGR-LEN-GTYVAIRSLTF------LKKYSIQNLKVR 486
           L  A   ++ ++ +GEG+ GK++K R L+N G +VA++ +        +   +I+ + V 
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV- 64
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG--SYRAHLSE-NCPENV 543
           L  L   +HP++V L   C  + S+ D  T K+ LV+E++     +Y   + E   P   
Sbjct: 65  LRHLETFEHPNVVRLFDVC--TVSRTDRET-KLTLVFEHVDQDLTTYLDKVPEPGVPTET 121
Query: 544 LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
           +K      ++  + + + FLHS  +       L   NIL+      KL+D+G++ I
Sbjct: 122 IK-----DMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARI 169

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 39  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 98
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + F
Sbjct: 99  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 149
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E  ++      A+    +
Sbjct: 150 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKE-FDSVHNKTGAKLPVKW 204
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 205 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 254
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 255 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 289

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
           + ++ +E +        +  +G G  G+++ G     T VA++SL      S        
Sbjct: 2   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 60
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
           + + +LQH  LV L     +           ++++ EY+ NGS    L    P  + L  
Sbjct: 61  NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFLK--TPSGIKLTI 109
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ ++E++E 
Sbjct: 110 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 165
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                    AR G  F  + +A      ++     ++ DV++FG +L E +    +   G
Sbjct: 166 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 214
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
              + N       + G  R+V P     C +E    +  +   C    P  RP+F+
Sbjct: 215 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 259

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
           + ++ +E +        +  +G G  G+++ G     T VA++SL      S        
Sbjct: 1   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 59
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
           + + +LQH  LV L     +           ++++ EY+ NGS    L    P  + L  
Sbjct: 60  NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFLK--TPSGIKLTI 108
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ ++E++E 
Sbjct: 109 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 164
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                    AR G  F  + +A      ++     ++ DV++FG +L E +    +   G
Sbjct: 165 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 213
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
              + N       + G  R+V P     C +E    +  +   C    P  RP+F+
Sbjct: 214 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 258

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 34/177 (19%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF---------LKKYSIQNLKVRL 487
           A N  +    +G+G  G ++KGRL ++ + VAI+SL           ++K+  Q  +  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF--QEFQREV 74
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS-YRAHLSENCPENVLKW 546
             +S L HP++V L G             N   +V E++P G  Y   L +  P   +KW
Sbjct: 75  FIMSNLNHPNIVKLYGLM----------HNPPRMVMEFVPCGDLYHRLLDKAHP---IKW 121
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNIL---LDEHR--IAKLSDYGIS 597
           S +L +++ +A  + ++ +   +    +R L + NI    LDE+    AK++D+G+S
Sbjct: 122 SVKLRLMLDIALGIEYMQNQ--NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 56  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 115
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 116 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 166
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 167 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 221
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 222 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 271
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 272 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 306

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 122/286 (42%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
           +G G  G++Y+G  +  +  VA+++L         FLK+ ++         + +++HP+L
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 69
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C        +     +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 70  VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 120
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           A+ +L       +F +R L   N L+ E+ + K++D+G+S +M         G+   A  
Sbjct: 121 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTFTAHA 168
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
           G  F  + +A   +      +  ++ DV+ FG +L E     +    G    ++    + 
Sbjct: 169 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG----IDPSQVYE 221
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
             +   R+  P     C ++    V  +   C    PS RPSF ++
Sbjct: 222 LLEKDYRMERP---EGCPEK----VYELMRACWQWNPSDRPSFAEI 260

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 40/302 (13%)
Query: 422 QGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQ 481
           Q     + ++ +E +        +  +G G  G+++ G     T VA++SL      S  
Sbjct: 1   QTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPD 59
Query: 482 NLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE 541
                 + + +LQH  LV L     +           ++++ EY+ NGS    L    P 
Sbjct: 60  AFLAEANLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPS 108
Query: 542 NV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
            + L  +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ +
Sbjct: 109 GIKLTINKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARL 164
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +E++E          AR G  F  + +A      ++     ++ DV++FG +L E +   
Sbjct: 165 IEDNEY--------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHG 213
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
            +   G   + N       + G  R+V P     C +E    +  +   C    P  RP+
Sbjct: 214 RIPYPG---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPT 262
Query: 720 FE 721
           F+
Sbjct: 263 FD 264

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
           + ++ +E +        +  +G G  G+++ G     T VA++SL      S        
Sbjct: 11  KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 69
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
           + + +LQH  LV L     +           ++++ EY+ NGS    L    P  + L  
Sbjct: 70  NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPSGIKLTI 118
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ ++E++E 
Sbjct: 119 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 174
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                    AR G  F  + +A      ++     ++ DV++FG +L E +    +   G
Sbjct: 175 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 223
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
              + N       + G  R+V P     C +E    +  +   C    P  RP+F+
Sbjct: 224 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 268

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 57  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 116
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 117 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 167
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 168 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKW 222
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 223 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 272
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 273 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 307

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 37  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 96
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 97  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 147
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 148 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNK-TGAKLPVKW 202
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 203 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 252
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 253 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 287

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
           + ++ +E +        +  +G G  G+++ G     T VA++SL      S        
Sbjct: 6   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 64
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
           + + +LQH  LV L     +           ++++ EY+ NGS    L    P  + L  
Sbjct: 65  NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPSGIKLTI 113
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ ++E++E 
Sbjct: 114 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 169
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                    AR G  F  + +A      ++     ++ DV++FG +L E +    +   G
Sbjct: 170 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 218
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
              + N       + G  R+V P     C +E    +  +   C    P  RP+F+
Sbjct: 219 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 263

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 38/275 (13%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++ G     T VA++SL      S        + + +LQH  LV L     +
Sbjct: 17  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 75
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSS 566
                      ++++ EY+ NGS    L    P  + L  +  L +   +A+ + F+   
Sbjct: 76  E---------PIYIITEYMENGSLVDFLK--TPSGIKLTINKLLDMAAQIAEGMAFIEER 124
Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
                    L   NIL+ +    K++D+G++ ++E++E          AR G  F  + +
Sbjct: 125 ---NYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEY--------TAREGAKFPIKWT 173
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIV 686
           A      ++     ++ DV++FG +L E +    +   G   + N       + G  R+V
Sbjct: 174 APE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG---MTNPEVIQNLERG-YRMV 226
Query: 687 DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
            P     C +E    +  +   C    P  RP+F+
Sbjct: 227 RP---DNCPEE----LYQLMRLCWKERPEDRPTFD 254

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 30  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 89
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 90  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 140
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 141 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 195
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 196 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 245
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 246 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 280

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 35  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 94
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 95  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 145
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 146 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 200
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 201 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 250
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 251 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 285

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
           + ++ +E +        +  +G G  G+++ G     T VA++SL      S        
Sbjct: 1   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 59
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
           + + +LQH  LV L     +           ++++ EY+ NGS    L    P  + L  
Sbjct: 60  NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFLK--TPSGIKLTI 108
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +  L +   +A+ + F+       ++ +R L   NIL+ +    K++D+G++ ++E++E 
Sbjct: 109 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 164
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                    AR G  F  + +A      ++     ++ DV++FG +L E +    +   G
Sbjct: 165 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 213
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
              + N       + G  R+V P     C +E    +  +   C    P  RP+F+
Sbjct: 214 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 258

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 98  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 148
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 149 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKW 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 204 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 253
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 254 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 288

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 128/304 (42%), Gaps = 55/304 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRL--ENGTY---VAIRSL--TFLKKYSIQNLK 484
           L  LKE       +  +G G+ G +YKG    E  T    VAI+ L  T   K +++ + 
Sbjct: 32  LRILKE--TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD 89
Query: 485 VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV- 543
             L  ++ + HPHLV LLG C+    Q         LV + +P+G    ++ E+  +N+ 
Sbjct: 90  EAL-IMASMDHPHLVRLLGVCLSPTIQ---------LVTQLMPHGCLLEYVHEH-KDNIG 138
Query: 544 ----LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
               L W       + +AK + +L    +       L   N+L+      K++D+G++ +
Sbjct: 139 SQLLLNWC------VQIAKGMMYLEERRL---VHRDLAARNVLVKSPNHVKITDFGLARL 189
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +E  EK E   +G K    ++          +  +  ++   + DV+++G  + E +   
Sbjct: 190 LEGDEK-EYNADGGKMPIKWM---------ALECIHYRKFTHQSDVWSYGVTIWELMT-- 237
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
              GK    +         + G R    P+    C+ +   ++V    KC   +  SRP 
Sbjct: 238 -FGGKPYDGIPTREIPDLLEKGERLPQPPI----CTIDVYMVMV----KCWMIDADSRPK 288
Query: 720 FEDV 723
           F+++
Sbjct: 289 FKEL 292

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 34/280 (12%)
Query: 448 MGEGSRGKLYK-GRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G+G  G+  K    E G  + ++ L    + + +     +  +  L+HP+++  +G   
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77
Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
           +     D   N    + EYI  G+ R  +     ++   WS R++    +A  + +LHS 
Sbjct: 78  K-----DKRLN---FITEYIKGGTLRGIIKSM--DSQYPWSQRVSFAKDIASGMAYLHSM 127
Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG----EGP--KARYGFL 620
            I       L ++N L+ E++   ++D+G++ +M + EK + +G    + P  K RY  +
Sbjct: 128 NI---IHRDLNSHNCLVRENKNVVVADFGLARLMVD-EKTQPEGLRSLKKPDRKKRYTVV 183
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
                 A     +++ +    + DV++FG +L E ++G +     +   L     FG   
Sbjct: 184 GNPYWMAPE---MINGRSYDEKVDVFSFGIVLCE-IIGRV---NADPDYLPRTMDFGLN- 235
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
             R  +D      C      I V    +C   +P  RPSF
Sbjct: 236 -VRGFLDRYCPPNCPPSFFPITV----RCCDLDPEKRPSF 270

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 116/276 (42%), Gaps = 40/276 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++ G     T VA++SL      S        + + +LQH  LV L     +
Sbjct: 16  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 74
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSS 566
                      ++++ EY+ NGS    L    P  + L  +  L +   +A+ + F+   
Sbjct: 75  E---------PIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFIEER 123
Query: 567 VISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRT 625
               ++ +R L   NIL+ +    K++D+G++ ++E++E          AR G  F  + 
Sbjct: 124 ----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY--------TAREGAKFPIKW 171
Query: 626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRI 685
           +A      ++     ++ DV++FG +L E +    +   G   + N       + G  R+
Sbjct: 172 TAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG---MTNPEVIQNLERG-YRM 224
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
           V P     C +E    +  +   C    P  RP+F+
Sbjct: 225 VRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 253

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 98  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 148
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 149 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 204 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 253
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 254 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 288

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 36  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 95
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 96  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 146
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 147 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 201
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 202 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 251
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 252 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 286

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G GS G +YKG+      V I  +        Q  +  +  L K +H +++  +G+  +
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK 103
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                    + + +V ++    S   HL  +  E   +    + I    A+ + +LH+  
Sbjct: 104 ---------DNLAIVTQWCEGSSLYKHL--HVQETKFQMFQLIDIARQTAQGMDYLHAKN 152
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
           I       + +NNI L E    K+ D+G++ +       + + E P     ++      A
Sbjct: 153 I---IHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQ-QVEQPTGSVLWM------A 202
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
             V+ + D      + DVY++G +L E + G +
Sbjct: 203 PEVIRMQDNNPFSFQSDVYSYGIVLYELMTGEL 235

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 112/280 (40%), Gaps = 43/280 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G+ G + K +      VAI+ +    +   +   V L  LS++ HP++V L G C+ 
Sbjct: 17  VGRGAFGVVCKAKW-RAKDVAIKQIE--SESERKAFIVELRQLSRVNHPNIVKLYGACL- 72
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                    N V LV EY   GS    L    P      +  ++  +  ++ V +LHS  
Sbjct: 73  ---------NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ 123
Query: 568 ISGSFSNRLTTNNILL-DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
                   L   N+LL     + K+ D+G +  ++ H     KG              ++
Sbjct: 124 PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-MTNNKG--------------SA 168
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLV--GPIVTGKGEAFLLNEMASFGSQDGRRR 684
           A     V +      + DV+++G IL E +    P     G AF +     +   +G R 
Sbjct: 169 AWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI----MWAVHNGTR- 223
Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
              P ++    +     + S+  +C   +PS RPS E+++
Sbjct: 224 ---PPLIKNLPKP----IESLMTRCWSKDPSQRPSMEEIV 256

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/281 (19%), Positives = 119/281 (42%), Gaps = 46/281 (16%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++       T VA++++      S++      + +  LQH  LV L  H + 
Sbjct: 23  LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKL--HAV- 78
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHL-----SENCPENVLKWSDRLAILIGVAKAVHF 562
                      ++++ E++  GS    L     S+     ++ +S ++A  +   +  ++
Sbjct: 79  ------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY 132
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
           +H           L   NIL+    + K++D+G++ ++E++E          AR G  F 
Sbjct: 133 IHRD---------LRAANILVSASLVCKIADFGLARVIEDNEY--------TAREGAKFP 175
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
            + +A      ++     ++ DV++FG +L+E +    +   G    ++      + +  
Sbjct: 176 IKWTAPE---AINFGSFTIKSDVWSFGILLMEIVTYGRIPYPG----MSNPEVIRALERG 228
Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
            R+  P     C +E  +I++    +C    P  RP+FE +
Sbjct: 229 YRMPRP---ENCPEELYNIMM----RCWKNRPEERPTFEYI 262

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF---------LKKYSIQNLKVRL 487
           A N  +    +G+G  G ++KGRL ++ + VAI+SL           ++K+  Q  +  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF--QEFQREV 74
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS-YRAHLSENCPENVLKW 546
             +S L HP++V L G             N   +V E++P G  Y   L +  P   +KW
Sbjct: 75  FIMSNLNHPNIVKLYGLM----------HNPPRMVMEFVPCGDLYHRLLDKAHP---IKW 121
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNIL--LDEHR--IAKLSDYGIS 597
           S +L +++ +A  + ++ +        +  + N  L  LDE+    AK++D+G S
Sbjct: 122 SVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTS 176

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 37  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 96
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 97  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 147
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 148 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 202
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 203 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 252
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 253 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 287

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 37/214 (17%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           L  +G+G  G +  G    G  VA++ +      + Q        +++L+H +LV LLG 
Sbjct: 17  LQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGV 73
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
            +E           +++V EY+  GS   +L      +VL     L   + V +A+ +L 
Sbjct: 74  IVE-------EKGGLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLE 125
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISI---IMEEHEKLEAKGEGPKARYGFL 620
            +    +F +R L   N+L+ E  +AK+SD+G++      ++  KL  K   P+A     
Sbjct: 126 GN----NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREAA 181
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           F  ++                  DV++FG +L E
Sbjct: 182 FSTKS------------------DVWSFGILLWE 197

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
           +G G  G +Y G L +      + A++SL  +     +         +    HP+++SLL
Sbjct: 33  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 92
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+ S            +V  Y+ +G  R  +        +K  D +   + VAK + +
Sbjct: 93  GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 143
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
           L S      F +R L   N +LDE    K++D+G++  M + E      +   A+    +
Sbjct: 144 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 198
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
           +   S +        Q+   + DV++FG +L E +    P    + T     +LL     
Sbjct: 199 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 248
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  RR++ P     C      +++    KC  P+   RPSF +++
Sbjct: 249 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 283

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 120/280 (42%), Gaps = 48/280 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G  G+++       T VA++++      S++      + +  LQH  LV L  H + 
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKL--HAV- 251
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHL-----SENCPENVLKWSDRLAILIGVAKAVHF 562
                      ++++ E++  GS    L     S+     ++ +S ++A  +   +  ++
Sbjct: 252 ------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY 305
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
           +H           L   NIL+    + K++D+G++ ++E++E          AR G  F 
Sbjct: 306 IHRD---------LRAANILVSASLVCKIADFGLARVIEDNEYT--------AREGAKFP 348
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT-GKGEAFLLNEMASFGSQDG 681
            + +A      ++     ++ DV++FG +L+E     IVT G+     ++      + + 
Sbjct: 349 IKWTAPE---AINFGSFTIKSDVWSFGILLME-----IVTYGRIPYPGMSNPEVIRALER 400
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
             R+  P     C +E  +I++    +C    P  RP+FE
Sbjct: 401 GYRMPRP---ENCPEELYNIMM----RCWKNRPEERPTFE 433

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 122/315 (38%), Gaps = 54/315 (17%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
           Y E+ +   NN      +G G+ GK+ +      G+ +    VA++ L +       + L
Sbjct: 37  YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 96
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYI--------------PN 528
              L  +S L QH ++V+LLG C   G         V ++ EY               P 
Sbjct: 97  MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRKRPPG 148
Query: 529 GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI 588
             Y  + S N PE  L   D L     VA+ + FL S          +   N+LL    +
Sbjct: 149 LEYSYNPSHN-PEEQLSSRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHV 204
Query: 589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNF 648
           AK+ D+G++  +        KG    AR    ++   S  + V  V       + DV+++
Sbjct: 205 AKIGDFGLARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------QSDVWSY 254
Query: 649 GFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNK 708
           G +L E  +  +        L+N       +DG  ++  P         +   + SI   
Sbjct: 255 GILLWE--IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNIYSIMQA 304
Query: 709 CICPEPSSRPSFEDV 723
           C   EP+ RP+F+ +
Sbjct: 305 CWALEPTHRPTFQQI 319

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPH 497
           F  L  +G GS G +Y  R + N   VAI+ +++  K S    Q++   + FL KL+HP+
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
            +   G  +          +  +LV EY    +         P   L+  +  A+  G  
Sbjct: 116 TIQYRGCYLRE--------HTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAVTHGAL 164
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           + + +LHS  +       +   NILL E  + KL D+G + IM
Sbjct: 165 QGLAYLHSHNM---IHRDVKAGNILLSEPGLVKLGDFGSASIM 204

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 127/301 (42%), Gaps = 55/301 (18%)
Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGRL--ENGTY---VAIRSL--TFLKKYSIQNLKVRL 487
           LKE       +  +G G+ G +YKG    E  T    VAI+ L  T   K +++ +   L
Sbjct: 12  LKE--TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 69
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV---- 543
             ++ + HPHLV LLG C+    Q         LV + +P+G    ++ E+  +N+    
Sbjct: 70  -IMASMDHPHLVRLLGVCLSPTIQ---------LVTQLMPHGCLLEYVHEH-KDNIGSQL 118
Query: 544 -LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
            L W       + +AK + +L    +       L   N+L+      K++D+G++ ++E 
Sbjct: 119 LLNWC------VQIAKGMMYLEERRL---VHRDLAARNVLVKSPNHVKITDFGLARLLEG 169
Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT 662
            EK E   +G K    ++          +  +  ++   + DV+++G  + E +      
Sbjct: 170 DEK-EYNADGGKMPIKWM---------ALECIHYRKFTHQSDVWSYGVTIWELMT---FG 216
Query: 663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED 722
           GK    +         + G R    P+    C+ +   ++V    KC   +  SRP F++
Sbjct: 217 GKPYDGIPTREIPDLLEKGERLPQPPI----CTIDVYMVMV----KCWMIDADSRPKFKE 268
Query: 723 V 723
           +
Sbjct: 269 L 269

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           HPH+++L+    ES S        +FLV++ +  G    +L+E      L   +  +I+ 
Sbjct: 159 HPHIITLID-SYESSS-------FMFLVFDLMRKGELFDYLTEKV---ALSEKETRSIMR 207
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
            + +AV FLH++ I       L   NILLD++   +LSD+G S  +E  EKL
Sbjct: 208 SLLEAVSFLHANNI---VHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKL 256

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 41/232 (17%)
Query: 427 YRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVR 486
           YR+ +   +KE       L  +G+G  G +  G    G  VA++ +      + Q     
Sbjct: 12  YRSGWALNMKE----LKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAE 64
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKW 546
              +++L+H +LV LLG  +E           +++V EY+  GS   +L      +VL  
Sbjct: 65  ASVMTQLRHSNLVQLLGVIVE-------EKGGLYIVTEYMAKGSLVDYLRSR-GRSVLGG 116
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISI---IMEE 602
              L   + V +A+ +L  +    +F +R L   N+L+ E  +AK+SD+G++      ++
Sbjct: 117 DCLLKFSLDVCEAMEYLEGN----NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD 172
Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
             KL  K   P+A                  +  ++   + DV++FG +L E
Sbjct: 173 TGKLPVKWTAPEA------------------LREKKFSTKSDVWSFGILLWE 206

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 112/280 (40%), Gaps = 43/280 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           +G G+ G + K +      VAI+ +    +   +   V L  LS++ HP++V L G C+ 
Sbjct: 16  VGRGAFGVVCKAKW-RAKDVAIKQIE--SESERKAFIVELRQLSRVNHPNIVKLYGACL- 71
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
                    N V LV EY   GS    L    P      +  ++  +  ++ V +LHS  
Sbjct: 72  ---------NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ 122
Query: 568 ISGSFSNRLTTNNILL-DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
                   L   N+LL     + K+ D+G +  ++ H     KG              ++
Sbjct: 123 PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-MTNNKG--------------SA 167
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLV--GPIVTGKGEAFLLNEMASFGSQDGRRR 684
           A     V +      + DV+++G IL E +    P     G AF +     +   +G R 
Sbjct: 168 AWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI----MWAVHNGTR- 222
Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
              P ++    +     + S+  +C   +PS RPS E+++
Sbjct: 223 ---PPLIKNLPKP----IESLMTRCWSKDPSQRPSMEEIV 255

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 39/221 (17%)
Query: 448 MGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  GRL    +    VAI++L      +    + R DFLS      +  HP+
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRDVPVAIKALK-----AGYTERQRRDFLSEASIMGQFDHPN 111
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          +      +V EY+ NGS    L  +  +  +     + +L GV 
Sbjct: 112 IIRLEGVV--------TRGRLAMIVTEYMENGSLDTFLRTHDGQFTIM--QLVGMLRGVG 161
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             + +L      G     L   N+L+D + + K+SD+G+S ++E+         G     
Sbjct: 162 AGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTG----- 213
Query: 618 GFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLV 657
           G + I  T+ E +       RT     DV++FG ++ E L 
Sbjct: 214 GKIPIRWTAPEAIAF-----RTFSSASDVWSFGVVMWEVLA 249

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 45/223 (20%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFL------SKLQHPH 497
           +G G  G++  GRL+        VAI++L     Y+    K R DFL       +  HP+
Sbjct: 51  IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKV--GYT---EKQRRDFLCEASIMGQFDHPN 105
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V L G          +    V +V E++ NG+  A L ++  +        + +L G+A
Sbjct: 106 VVHLEGVV--------TRGKPVMIVIEFMENGALDAFLRKH--DGQFTVIQLVGMLRGIA 155
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             + +L      G     L   NIL++ + + K+SD+G+S ++E+          P+A Y
Sbjct: 156 AGMRYLADM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDD---------PEAVY 203
Query: 618 ----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
               G + +  T+ E     +  ++     DV+++G ++ E +
Sbjct: 204 TTTGGKIPVRWTAPE----AIQYRKFTSASDVWSYGIVMWEVM 242

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 448 MGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  GRL    +    VAI++L      +    + R DFLS      +  HP+
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRDVPVAIKALK-----AGYTERQRRDFLSEASIMGQFDHPN 111
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          +      +V EY+ NGS    L  +  +  +     + +L GV 
Sbjct: 112 IIRLEGVV--------TRGRLAMIVTEYMENGSLDTFLRTHDGQFTIM--QLVGMLRGVG 161
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             + +L      G     L   N+L+D + + K+SD+G+S ++E+          P A Y
Sbjct: 162 AGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD---------PDAAY 209
Query: 618 ----GFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLV 657
               G + I  T+ E +       RT     DV++FG ++ E L 
Sbjct: 210 TTTGGKIPIRWTAPEAIAF-----RTFSSASDVWSFGVVMWEVLA 249

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPH 497
           F  L  +G GS G +Y  R + N   VAI+ +++  K S    Q++   + FL KL+HP+
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
            +   G  +          +  +LV EY    +         P   L+  +  A+  G  
Sbjct: 77  TIQYRGCYLRE--------HTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAVTHGAL 125
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
           + + +LHS          +   NILL E  + KL D+G + IM
Sbjct: 126 QGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIM 165

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 26/219 (11%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           L     G  G ++K +L N  YVA++      K S QN +  +  L  ++H +++  +G 
Sbjct: 29  LEVKARGRFGCVWKAQLLN-EYVAVKIFPIQDKQSWQN-EYEVYSLPGMKHENILQFIG- 85
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
             + G+  D +   ++L+  +   GS    LS+    NV+ W++   I   +A+ + +LH
Sbjct: 86  AEKRGTSVDVD---LWLITAFHEKGS----LSDFLKANVVSWNELCHIAETMARGLAYLH 138
Query: 565 SSV------ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             +         + S+R + + N+LL  +  A ++D+G+++      K EA G+     +
Sbjct: 139 EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL------KFEA-GKSAGDTH 191
Query: 618 GFLFICRTSAENVVI-VVDIQRTK-LEDDVYNFGFILLE 654
           G +   R  A  V+   ++ QR   L  D+Y  G +L E
Sbjct: 192 GQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWE 230

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  G L+       +VAI++L      S    K R DFLS      +  HP+
Sbjct: 15  IGAGEFGEVCSGHLKLPGKREIFVAIKTLK-----SGYTEKQRRDFLSEASIMGQFDHPN 69
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G   +S          V ++ E++ NGS  + L +N  +        + +L G+A
Sbjct: 70  VIHLEGVVTKS--------TPVMIITEFMENGSLDSFLRQN--DGQFTVIQLVGMLRGIA 119
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             + +L       ++ +R L   NIL++ + + K+SD+G+S  +E+     +      A 
Sbjct: 120 AGMKYLADM----NYVHRALAARNILVNSNLVCKVSDFGLSRFLEDD---TSDPTYTSAL 172
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
            G + I  T+ E     +  ++     DV+++G ++ E +
Sbjct: 173 GGKIPIRWTAPE----AIQYRKFTSASDVWSYGIVMWEVM 208

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           L  +G G  G +  G+      VAI+ +   +  +   I+  KV ++    L H  LV L
Sbjct: 14  LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 69
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C        +    +F++ EY+ NG    +L E    +  +    L +   V +A+ 
Sbjct: 70  YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 119
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
           +L S      F +R L   N L+++  + K+SD+G+S  + + E   ++G          
Sbjct: 120 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSK-------- 167
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
           F  R S   V++     +   + D++ FG ++ E  +  +     E F  +E A   +Q 
Sbjct: 168 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 222
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
              R+  P + +         V +I   C   +   RP+F+ +L N+
Sbjct: 223 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 260

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 30/167 (17%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++ +GRL+      + VAI++L     Y+ +    R +FLS      + +HP+
Sbjct: 24  IGAGEFGEVCRGRLKAPGKKESCVAIKTLK--GGYTERQ---RREFLSEASIMGQFEHPN 78
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          +N+  V ++ E++ NG+  + L  N  +        + +L G+A
Sbjct: 79  IIRLEGVV--------TNSMPVMILTEFMENGALDSFLRLN--DGQFTVIQLVGMLRGIA 128
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
             + +L       S+ +R L   NIL++ + + K+SD+G+S  +EE+
Sbjct: 129 SGMRYLAEM----SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEEN 171

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++  G L+       +VAI++L      S    K R DFLS      +  HP+
Sbjct: 41  IGAGEFGEVCSGHLKLPGKREIFVAIKTLK-----SGYTEKQRRDFLSEASIMGQFDHPN 95
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G   +S          V ++ E++ NGS  + L +N  +        + +L G+A
Sbjct: 96  VIHLEGVVTKS--------TPVMIITEFMENGSLDSFLRQN--DGQFTVIQLVGMLRGIA 145
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
             + +L       ++ +R L   NIL++ + + K+SD+G+S  +E+     +      A 
Sbjct: 146 AGMKYLADM----NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD---TSDPTYTSAL 198
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
            G + I  T+ E     +  ++     DV+++G ++ E +
Sbjct: 199 GGKIPIRWTAPE----AIQYRKFTSASDVWSYGIVMWEVM 234

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 77/171 (45%), Gaps = 9/171 (5%)
Query: 441 NFDSLSFMGEGSRGKLY--KGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
           +F+ +  +G G  G ++  K ++++  Y   R     ++ + + +   +  L+KL+HP +
Sbjct: 6   DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI 65
Query: 499 VSLLGHCIESGS----QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           V      +E  +    Q  S    +++  +     + +  ++  C     + S  L I +
Sbjct: 66  VRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFL 125
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
            +A+AV FLHS    G     L  +NI      + K+ D+G+   M++ E+
Sbjct: 126 QIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEE 173

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 137/318 (43%), Gaps = 55/318 (17%)
Query: 419 LGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLT 473
           +G +   A     L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L 
Sbjct: 3   MGIRSGEAPNQALLRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR 60
Query: 474 FLKKYSIQNLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
             +  S +  K  LD    ++ + +PH+  LLG C+         T+ V L+ + +P G 
Sbjct: 61  --EATSPKANKEILDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGC 109
Query: 531 ----YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
                R H      + +L W       + +AK +++L    +       L   N+L+   
Sbjct: 110 LLDYVREHKDNIGSQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTP 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
           +  K++D+G++ ++   EK E   EG K    ++     + E+++  +   ++    DV+
Sbjct: 161 QHVKITDFGLAKLLGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVW 210
Query: 647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT 706
           ++G  + E +     +   +    +E++S   + G R    P+    C+ +   I+V   
Sbjct: 211 SYGVTVWELMT--FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV--- 260
Query: 707 NKCICPEPSSRPSFEDVL 724
            KC   +  SRP F +++
Sbjct: 261 -KCWMIDADSRPKFRELI 277

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 30/167 (17%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           +G G  G++ +GRL+      + VAI++L     Y+ +    R +FLS      + +HP+
Sbjct: 22  IGAGEFGEVCRGRLKAPGKKESCVAIKTLK--GGYTERQ---RREFLSEASIMGQFEHPN 76
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G          +N+  V ++ E++ NG+  + L  N  +        + +L G+A
Sbjct: 77  IIRLEGVV--------TNSMPVMILTEFMENGALDSFLRLN--DGQFTVIQLVGMLRGIA 126
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
             + +L       S+ +R L   NIL++ + + K+SD+G+S  +EE+
Sbjct: 127 SGMRYLAEM----SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEEN 169

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           L  +G G  G +  G+      VAI+ +   +  +   I+  KV ++    L H  LV L
Sbjct: 29  LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 84
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C        +    +F++ EY+ NG    +L E    +  +    L +   V +A+ 
Sbjct: 85  YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 134
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
           +L S      F +R L   N L+++  + K+SD+G+S  + + E+  + G          
Sbjct: 135 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSK-------- 182
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
           F  R S   V++     +   + D++ FG ++ E  +  +     E F  +E A   +Q 
Sbjct: 183 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 237
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
              R+  P + +         V +I   C   +   RP+F+ +L N+
Sbjct: 238 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 275

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 37/214 (17%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           L  +G+G  G +  G    G  VA++ +      + Q        +++L+H +LV LLG 
Sbjct: 11  LQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGV 67
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
            +E           +++V EY+  GS   +L      +VL     L   + V +A+ +L 
Sbjct: 68  IVE-------EKGGLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLE 119
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISI---IMEEHEKLEAKGEGPKARYGFL 620
            +    +F +R L   N+L+ E  +AK+SD+G++      ++  KL  K   P+A     
Sbjct: 120 GN----NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA----- 170
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
                        +  ++   + DV++FG +L E
Sbjct: 171 -------------LREKKFSTKSDVWSFGILLWE 191

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 64/336 (19%)
Query: 414 SQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL 472
           S  V LGT+        Y + +++    +++L  +GEGS G + K R  + G  VAI+  
Sbjct: 9   SSGVDLGTE------NLYFQSMEK----YENLGLVGEGSYGMVMKCRNKDTGRIVAIKKF 58
Query: 473 ------TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYI 526
                   +KK +++ +K+    L +L+H +LV+LL  C            + +LV+E++
Sbjct: 59  LESDDDKMVKKIAMREIKL----LKQLRHENLVNLLEVC--------KKKKRWYLVFEFV 106
Query: 527 PNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
            +        E  P N L +      L  +   + F HS  I       +   NIL+ + 
Sbjct: 107 DHTILDD--LELFP-NGLDYQVVQKYLFQIINGIGFCHSHNI---IHRDIKPENILVSQS 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
            + KL D+G +        L A GE     Y      R      ++V D++  K   DV+
Sbjct: 161 GVVKLCDFGFA------RTLAAPGE----VYDDEVATRWYRAPELLVGDVKYGKAV-DVW 209
Query: 647 NFGFILLESLVG-PIVTGKGEA-FLLNEMASFGSQDGRRRIV---DPVVL-----TTCSQ 696
             G ++ E  +G P+  G  +   L + M   G+   R + +   +PV           +
Sbjct: 210 AIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKER 269
Query: 697 ESL--------SIVVSITNKCICPEPSSRPSFEDVL 724
           E L         +V+ +  KC+  +P  RP   ++L
Sbjct: 270 EPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELL 305

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           + +   +G GS G +++ +L     VAI+ +   K++  + L++    +  ++HP++V L
Sbjct: 42  YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQI----MRIVKHPNVVDL 97
Query: 502 LGHCIESGSQDDSNTNKVF--LVYEYIPNGSYR-----AHLSENCPENVLKWSDRLAILI 554
                 +G + D    +VF  LV EY+P   YR     A L +  P  ++K       + 
Sbjct: 98  KAFFYSNGDKKD----EVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKL-----YMY 148
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGISIIM 600
            + +++ ++HS    G     +   N+LLD    + KL D+G + I+
Sbjct: 149 QLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL 192

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 13  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 68
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 69  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 119
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 120 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 170
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 171 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 218
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 219 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 269
Query: 720 FEDVL 724
           F +++
Sbjct: 270 FRELI 274

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 45/233 (19%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-------RL 487
           K +  +F  L  +G GS G+++  R   NG Y A++ L   KK  +  LK        RL
Sbjct: 2   KYSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVL---KKEIVVRLKQVEHTNDERL 58
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL--SENCPENVLK 545
             LS + HP ++ + G           +  ++F++ +YI  G   + L  S+  P  V K
Sbjct: 59  -MLSIVTHPFIIRMWGTF--------QDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAK 109
Query: 546 WSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +         V  A+ +LHS  I       L   NILLD++   K++D+G +  +     
Sbjct: 110 F-----YAAEVCLALEYLHSKDI---IYRDLKPENILLDKNGHIKITDFGFAKYV----- 156
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG 658
                  P   Y    +C T       VV  +      D ++FG ++ E L G
Sbjct: 157 -------PDVTYX---LCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAG 199

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 440 NNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLTFL-----KKYSIQNLKVRLDFLSKL 493
                L  +G G  G ++KG  +  G  + I     +      + S Q +   +  +  L
Sbjct: 13  TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL 72
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN----CPENVLKWSDR 549
            H H+V LLG C  S  Q         LV +Y+P GS   H+ ++     P+ +L W   
Sbjct: 73  DHAHIVRLLGLCPGSSLQ---------LVTQYLPLGSLLDHVRQHRGALGPQLLLNWG-- 121
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
               + +AK +++L      G     L   N+LL      +++D+G++ ++   +K
Sbjct: 122 ----VQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDK 170

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 34/177 (19%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF---------LKKYSIQNLKVRL 487
           A N  +    +G+G  G ++KGRL ++ + VAI+SL           ++K+  Q  +  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF--QEFQREV 74
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS-YRAHLSENCPENVLKW 546
             +S L HP++V L G             N   +V E++P G  Y   L +  P   +KW
Sbjct: 75  FIMSNLNHPNIVKLYGLM----------HNPPRMVMEFVPCGDLYHRLLDKAHP---IKW 121
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNIL---LDEHR--IAKLSDYGIS 597
           S +L +++ +A  + ++ +   +    +R L + NI    LDE+    AK++D+ +S
Sbjct: 122 SVKLRLMLDIALGIEYMQNQ--NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLS 176

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 35/188 (18%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLTFL-----KKYSIQ 481
           R F   EL++       L  +G G  G ++KG  +  G  + I     +      + S Q
Sbjct: 26  RIFKETELRK-------LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQ 78
Query: 482 NLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--- 538
            +   +  +  L H H+V LLG C  S  Q         LV +Y+P GS   H+ ++   
Sbjct: 79  AVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ---------LVTQYLPLGSLLDHVRQHRGA 129
Query: 539 -CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
             P+ +L W       + +AK +++L      G     L   N+LL      +++D+G++
Sbjct: 130 LGPQLLLNWG------VQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVA 180
Query: 598 IIMEEHEK 605
            ++   +K
Sbjct: 181 DLLPPDDK 188

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 10  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 65
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 66  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGXLLDYVREHKDNIG 116
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 117 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 167
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 168 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 215
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 216 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 266
Query: 720 FEDVL 724
           F +++
Sbjct: 267 FRELI 271

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 12  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 67
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 68  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 118
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 119 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 169
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 170 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 217
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 218 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 268
Query: 720 FEDVL 724
           F +++
Sbjct: 269 FRELI 273

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 10  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 65
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 66  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 116
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 117 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 167
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 168 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 215
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 216 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 266
Query: 720 FEDVL 724
           F +++
Sbjct: 267 FRELI 271

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 22/163 (13%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVA-IRSLTFLKKYSI-------QNLKVRLDFLSKL 493
           F+ L  +G+G  GK+++ R   G     I ++  LKK  I        + K   + L ++
Sbjct: 19  FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
           +HP +V L+ +  ++G        K++L+ EY+  G     L     E +         L
Sbjct: 79  KHPFIVDLI-YAFQTGG-------KLYLILEYLSGGELFMQLER---EGIFMEDTACFYL 127
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
             ++ A+  LH     G     L   NI+L+     KL+D+G+
Sbjct: 128 AEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGL 167

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 22/163 (13%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVA-IRSLTFLKKYSI-------QNLKVRLDFLSKL 493
           F+ L  +G+G  GK+++ R   G     I ++  LKK  I        + K   + L ++
Sbjct: 19  FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
           +HP +V L+ +  ++G        K++L+ EY+  G     L     E +         L
Sbjct: 79  KHPFIVDLI-YAFQTGG-------KLYLILEYLSGGELFMQLER---EGIFMEDTACFYL 127
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
             ++ A+  LH     G     L   NI+L+     KL+D+G+
Sbjct: 128 AEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGL 167

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 11  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 67  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 267
Query: 720 FEDVL 724
           F +++
Sbjct: 268 FRELI 272

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 9   LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 65  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 265
Query: 720 FEDVL 724
           F +++
Sbjct: 266 FRELI 270

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 12  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 67
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 68  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 118
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 119 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 169
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 170 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 217
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +    V  I  KC   +  SRP 
Sbjct: 218 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 268
Query: 720 FEDVL 724
           F +++
Sbjct: 269 FRELI 273

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 120/308 (38%), Gaps = 46/308 (14%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
           Y E+ +   NN      +G G+ GK+ +      G+ +    VA++ L +       + L
Sbjct: 29  YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 88
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
              L  +S L QH ++V+LLG C   G         V ++ EY   G     L      +
Sbjct: 89  MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRKAEAD 140
Query: 543 V-------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
           +       L+  D L     VA+ + FL S          +   N+LL    +AK+ D+G
Sbjct: 141 LDKEDGRPLELRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIGDFG 197
Query: 596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES 655
           ++  +        KG    AR    ++   S  + V  V       + DV+++G +L E 
Sbjct: 198 LARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------QSDVWSYGILLWE- 246
Query: 656 LVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
            +  +        L+N       +DG  ++  P         +   + SI   C   EP+
Sbjct: 247 -IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNIYSIMQACWALEPT 297
Query: 716 SRPSFEDV 723
            RP+F+ +
Sbjct: 298 HRPTFQQI 305

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 15  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 70
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 71  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 121
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 122 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 172
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 173 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 220
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 221 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 271
Query: 720 FEDVL 724
           F +++
Sbjct: 272 FRELI 276

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 131/303 (43%), Gaps = 51/303 (16%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRS--LTFLKKYSIQNLKVRLD 488
           L  LKE    F  +  +G G+ G +YKG  +  G  V I    +   +  S +  K  LD
Sbjct: 43  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILD 100
Query: 489 ---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENCPE 541
               ++ + +PH+  LLG C+         T+ V L+ + +P G      R H      +
Sbjct: 101 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 151
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
            +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ ++ 
Sbjct: 152 YLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLG 202
Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV 661
             EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +     
Sbjct: 203 AEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT--FG 250
Query: 662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
           +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP F 
Sbjct: 251 SKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPKFR 301
Query: 722 DVL 724
           +++
Sbjct: 302 ELI 304

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 11  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 67  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 267
Query: 720 FEDVL 724
           F +++
Sbjct: 268 FRELI 272

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 12  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 67
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 68  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 118
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 119 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 169
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 170 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 217
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 218 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 268
Query: 720 FEDVL 724
           F +++
Sbjct: 269 FRELI 273

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           L  +G G  G +  G+      VAI+ +   +  +   I+  KV ++    L H  LV L
Sbjct: 29  LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 84
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C        +    +F++ EY+ NG    +L E    +  +    L +   V +A+ 
Sbjct: 85  YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 134
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
           +L S      F +R L   N L+++  + K+SD+G+S  + + E   + G          
Sbjct: 135 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 182
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
           F  R S   V++     +   + D++ FG ++ E  +  +     E F  +E A   +Q 
Sbjct: 183 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 237
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
              R+  P + +         V +I   C   +   RP+F+ +L N+
Sbjct: 238 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 275

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 19  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 74
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 75  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 125
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 126 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 176
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 177 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 224
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +    V  I  KC   +  SRP 
Sbjct: 225 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 275
Query: 720 FEDVL 724
           F +++
Sbjct: 276 FRELI 280

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 12  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 67
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 68  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 118
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 119 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 169
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 170 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 217
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 218 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 268
Query: 720 FEDVL 724
           F +++
Sbjct: 269 FRELI 273

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 9   LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 65  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGXLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 265
Query: 720 FEDVL 724
           F +++
Sbjct: 266 FRELI 270

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 9   LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 65  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 265
Query: 720 FEDVL 724
           F +++
Sbjct: 266 FRELI 270

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 34  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 89
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 90  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 140
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 141 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 191
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 192 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 239
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 240 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 290
Query: 720 FEDVL 724
           F +++
Sbjct: 291 FRELI 295

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 120/308 (38%), Gaps = 46/308 (14%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
           Y E+ +   NN      +G G+ GK+ +      G+ +    VA++ L +       + L
Sbjct: 37  YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 96
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
              L  +S L QH ++V+LLG C   G         V ++ EY   G     L      +
Sbjct: 97  MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRKAEAD 148
Query: 543 V-------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
           +       L+  D L     VA+ + FL S          +   N+LL    +AK+ D+G
Sbjct: 149 LDKEDGRPLELRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIGDFG 205
Query: 596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES 655
           ++  +        KG    AR    ++   S  + V  V       + DV+++G +L E 
Sbjct: 206 LARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------QSDVWSYGILLWE- 254
Query: 656 LVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
            +  +        L+N       +DG  ++  P         +   + SI   C   EP+
Sbjct: 255 -IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNIYSIMQACWALEPT 305
Query: 716 SRPSFEDV 723
            RP+F+ +
Sbjct: 306 HRPTFQQI 313

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 9   LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 65  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +    V  I  KC   +  SRP 
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 265
Query: 720 FEDVL 724
           F +++
Sbjct: 266 FRELI 270

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFL 490
           L  L++    F+ +  +G G+ G++YKGR ++ G   AI+ +        + +K  ++ L
Sbjct: 16  LSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE-EEIKQEINML 74
Query: 491 SKL-QHPHLVSLLGHCIESG--SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
            K   H ++ +  G  I+      DD    +++LV E+   GS    L +N   N LK  
Sbjct: 75  KKYSHHRNIATYYGAFIKKNPPGMDD----QLWLVMEFCGAGSV-TDLIKNTKGNTLKEE 129
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
               I   + + +  LH   +       +   N+LL E+   KL D+G+S
Sbjct: 130 WIAYICREILRGLSHLHQHKV---IHRDIKGQNVLLTENAEVKLVDFGVS 176

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 129/314 (41%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
           +GEG+ G+        L K +    T VA++ L +   +  + +L   ++ +  + +H +
Sbjct: 36  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------ENC------PENVL 544
           +++LLG C + G         ++++ EY   G+ R +L        E C      PE  L
Sbjct: 96  IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQL 147
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
              D ++    VA+ + +L S          L   N+L+ E  + K++D+G++  +   +
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 204
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
                   +L  K   P+A +  ++  ++                  DV++FG +L E  
Sbjct: 205 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 244
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
              I T  G  +    + E+     +    R+  P   + C+ E    +  +   C    
Sbjct: 245 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 292
Query: 714 PSSRPSFEDVLWNL 727
           PS RP+F+ ++ +L
Sbjct: 293 PSQRPTFKQLVEDL 306

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 441 NFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLT--FLKKYSIQ-NLKVRLDFLSKLQHP 496
           N+  +  +GEGS GK+        G  VA++ +    L K  +Q  ++  + +L  L+HP
Sbjct: 14  NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 73
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPENVLKWSDRLA 551
           H++ L    I+S        +++ +V EY  N  +     R  +SE       +      
Sbjct: 74  HIIKLYD-VIKS-------KDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQ------ 119
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
               +  AV + H   I       L   N+LLDEH   K++D+G+S IM +
Sbjct: 120 ---QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 129/314 (41%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
           +GEG+ G+        L K +    T VA++ L +   +  + +L   ++ +  + +H +
Sbjct: 21  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 80
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------ENC------PENVL 544
           +++LLG C + G         ++++ EY   G+ R +L        E C      PE  L
Sbjct: 81  IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQL 132
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
              D ++    VA+ + +L S          L   N+L+ E  + K++D+G++  +   +
Sbjct: 133 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
                   +L  K   P+A +  ++  ++                  DV++FG +L E  
Sbjct: 190 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 229
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
              I T  G  +    + E+     +    R+  P   + C+ E    +  +   C    
Sbjct: 230 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 277
Query: 714 PSSRPSFEDVLWNL 727
           PS RP+F+ ++ +L
Sbjct: 278 PSQRPTFKQLVEDL 291

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 441 NFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLT--FLKKYSIQ-NLKVRLDFLSKLQHP 496
           N+  +  +GEGS GK+        G  VA++ +    L K  +Q  ++  + +L  L+HP
Sbjct: 9   NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 68
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPENVLKWSDRLA 551
           H++ L    I+S        +++ +V EY  N  +     R  +SE       +      
Sbjct: 69  HIIKLYD-VIKS-------KDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQ------ 114
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
               +  AV + H   I       L   N+LLDEH   K++D+G+S IM +
Sbjct: 115 ---QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTD 159

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 441 NFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLT--FLKKYSIQ-NLKVRLDFLSKLQHP 496
           N+  +  +GEGS GK+        G  VA++ +    L K  +Q  ++  + +L  L+HP
Sbjct: 15  NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 74
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPENVLKWSDRLA 551
           H++ L    I+S        +++ +V EY  N  +     R  +SE       +      
Sbjct: 75  HIIKLYD-VIKS-------KDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQ------ 120
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
               +  AV + H   I       L   N+LLDEH   K++D+G+S IM +
Sbjct: 121 ---QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTD 165

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 3   LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 58
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 59  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 109
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G++ +
Sbjct: 110 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 160
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 161 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 208
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 209 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 259
Query: 720 FEDVL 724
           F +++
Sbjct: 260 FRELI 264

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 441 NFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLT--FLKKYSIQ-NLKVRLDFLSKLQHP 496
           N+  +  +GEGS GK+        G  VA++ +    L K  +Q  ++  + +L  L+HP
Sbjct: 5   NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 64
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPENVLKWSDRLA 551
           H++ L    I+S        +++ +V EY  N  +     R  +SE       +      
Sbjct: 65  HIIKLYD-VIKS-------KDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQ------ 110
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
               +  AV + H   I       L   N+LLDEH   K++D+G+S IM +
Sbjct: 111 ---QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTD 155

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 136/318 (42%), Gaps = 55/318 (17%)
Query: 419 LGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLT 473
           +G +   A     L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L 
Sbjct: 3   MGIRSGEAPNQALLRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR 60
Query: 474 FLKKYSIQNLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
             +  S +  K  LD    ++ + +PH+  LLG C+         T+ V L+ + +P G 
Sbjct: 61  --EATSPKANKEILDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGC 109
Query: 531 ----YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
                R H      + +L W       + +AK +++L    +       L   N+L+   
Sbjct: 110 LLDYVREHKDNIGSQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTP 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
           +  K++D+G + ++   EK E   EG K    ++     + E+++  +   ++    DV+
Sbjct: 161 QHVKITDFGRAKLLGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVW 210
Query: 647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT 706
           ++G  + E +     +   +    +E++S   + G R    P+    C+ +   I+V   
Sbjct: 211 SYGVTVWELMT--FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV--- 260
Query: 707 NKCICPEPSSRPSFEDVL 724
            KC   +  SRP F +++
Sbjct: 261 -KCWMIDADSRPKFRELI 277

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           L  +G G  G +  G+      VAI+ +   +  +   I+  KV ++    L H  LV L
Sbjct: 20  LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 75
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C        +    +F++ EY+ NG    +L E    +  +    L +   V +A+ 
Sbjct: 76  YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 125
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
           +L S      F +R L   N L+++  + K+SD+G+S  + + E   + G          
Sbjct: 126 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 173
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
           F  R S   V++     +   + D++ FG ++ E  +  +     E F  +E A   +Q 
Sbjct: 174 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 228
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
              R+  P + +         V +I   C   +   RP+F+ +L N+
Sbjct: 229 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 266

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 15/140 (10%)
Query: 112 DKIHRLSSL-ELLDMSSNFLFG----AIPSGI-SRLVRLQTLTMDTNFFDDNVPDW-WDS 164
           +K+H +S+L EL +++   L G    ++P+G+  +L  L+ L +  N    ++PD  +D 
Sbjct: 73  NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDK 131
Query: 165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRE 222
           L+NLT L L  NQL+        ++  LT + + NN+L   LP+     LT L  L L +
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLND 190
Query: 223 NKLDSGLPLMPKGLVTVLLS 242
           N+L S    +P G+   L S
Sbjct: 191 NQLKS----VPDGVFDRLTS 206

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           L  +G G  G +  G+      VAI+ +   +  +   I+  KV ++    L H  LV L
Sbjct: 13  LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 68
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C        +    +F++ EY+ NG    +L E    +  +    L +   V +A+ 
Sbjct: 69  YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 118
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
           +L S      F +R L   N L+++  + K+SD+G+S  + + E   + G          
Sbjct: 119 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 166
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
           F  R S   V++     +   + D++ FG ++ E  +  +     E F  +E A   +Q 
Sbjct: 167 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 221
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
              R+  P + +         V +I   C   +   RP+F+ +L N+
Sbjct: 222 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 259

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           L  +G G  G +  G+      VAI+ +   +  +   I+  KV ++    L H  LV L
Sbjct: 9   LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 64
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C        +    +F++ EY+ NG    +L E    +  +    L +   V +A+ 
Sbjct: 65  YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 114
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
           +L S      F +R L   N L+++  + K+SD+G+S  + + E   + G          
Sbjct: 115 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 162
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
           F  R S   V++     +   + D++ FG ++ E  +  +     E F  +E A   +Q 
Sbjct: 163 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 217
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
              R+  P + +         V +I   C   +   RP+F+ +L N+
Sbjct: 218 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 255

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDN-VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRI 189
           F  I +G+S L   + L M  N F +N +PD +  L NLT L L   QL+   P++   +
Sbjct: 437 FNGIFNGLSSL---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 190 ATLTDIAMS-NNELSGKLPDMSALTSLHVLDLRENKLDSG----LPLMPKGLVTVLLSRN 244
           ++L  + MS NN  S        L SL VLD   N + +     L   P  L  + L++N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 245 LFSGAIPQQ 253
            F+     Q
Sbjct: 554 DFACTCEHQ 562

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 116/307 (37%), Gaps = 56/307 (18%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +S +G+G+ G +   R +      G  VA++ L        ++ +  +  L  L    +V
Sbjct: 15  ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIV 74
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
              G     G Q       + LV EY+P+G  R  L  +     L  S  L     + K 
Sbjct: 75  KYRGVSYGPGRQ------SLRLVMEYLPSGCLRDFLQRH--RARLDASRLLLYSSQICKG 126
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKAR 616
           + +L S          L   NIL++     K++D+G++ ++   +++  +   G+ P   
Sbjct: 127 MEYLGSRRC---VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI-- 181
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS- 675
             F +   + ++N+           + DV++FG +L E       +    A  L  M S 
Sbjct: 182 --FWYAPESLSDNIF--------SRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGSE 231
Query: 676 ----------FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE---- 721
                        ++G+R    P     C  E    V  +   C  P P  RPSF     
Sbjct: 232 RDVPALSRLLELLEEGQRLPAPP----ACPAE----VHELMKLCWAPSPQDRPSFSALGP 283
Query: 722 --DVLWN 726
             D+LW+
Sbjct: 284 QLDMLWS 290

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           L  +G G  G +  G+      VAI+ +   +  +   I+  KV ++    L H  LV L
Sbjct: 14  LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 69
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
            G C        +    +F++ EY+ NG    +L E    +  +    L +   V +A+ 
Sbjct: 70  YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 119
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
           +L S      F +R L   N L+++  + K+SD+G+S  + + E   + G          
Sbjct: 120 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 167
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
           F  R S   V++     +   + D++ FG ++ E  +  +     E F  +E A   +Q 
Sbjct: 168 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 222
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
              R+  P + +         V +I   C   +   RP+F+ +L N+
Sbjct: 223 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 260

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 55/318 (17%)
Query: 419 LGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLT 473
           +G +   A     L  LKE    F  +  +  G+ G +YKG  +  G  V    AI+ L 
Sbjct: 3   MGIRSGEAPNQALLRILKE--TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELR 60
Query: 474 FLKKYSIQNLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
             +  S +  K  LD    ++ + +PH+  LLG C+         T+ V L+ + +P G 
Sbjct: 61  --EATSPKANKEILDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGC 109
Query: 531 ----YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
                R H      + +L W       + +AK +++L    +       L   N+L+   
Sbjct: 110 LLDYVREHKDNIGSQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTP 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
           +  K++D+G++ ++   EK E   EG K    ++     + E+++  +   ++    DV+
Sbjct: 161 QHVKITDFGLAKLLGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVW 210
Query: 647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT 706
           ++G  + E +     +   +    +E++S   + G R    P+    C+ +   I+V   
Sbjct: 211 SYGVTVWELMT--FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV--- 260
Query: 707 NKCICPEPSSRPSFEDVL 724
            KC   +  SRP F +++
Sbjct: 261 -KCWMIDADSRPKFRELI 277

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 24/117 (20%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCP 540
           +H ++++LLG C + G         ++++ EY   G+ R +L                 P
Sbjct: 86  KHKNIINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 137
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           E  + + D ++    +A+ + +L S          LT  N+L+ E+ + K++D+G++
Sbjct: 138 EEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLTARNVLVTENNVMKIADFGLA 191

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 128/314 (40%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
           +GEG+ G+        L K +    T VA++ L +   +  + +L   ++ +  + +H +
Sbjct: 36  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
           +++LLG C + G         ++++ EY   G+ R +L               + PE  L
Sbjct: 96  IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQL 147
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
              D ++    VA+ + +L S          L   N+L+ E  + K++D+G++  +   +
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 204
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
                   +L  K   P+A +  ++  ++                  DV++FG +L E  
Sbjct: 205 XXKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 244
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
              I T  G  +    + E+  F       R+  P   + C+ E    +  +   C    
Sbjct: 245 ---IFTLGGSPYPGVPVEEL--FKLLKEGHRMDKP---SNCTNE----LYMMMRDCWHAV 292
Query: 714 PSSRPSFEDVLWNL 727
           PS RP+F+ ++ +L
Sbjct: 293 PSQRPTFKQLVEDL 306

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDN-VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRI 189
           F  I +G+S L   + L M  N F +N +PD +  L NLT L L   QL+   P++   +
Sbjct: 142 FNGIFNGLSSL---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 190 ATLTDIAMS-NNELSGKLPDMSALTSLHVLDLRENKLDSG----LPLMPKGLVTVLLSRN 244
           ++L  + MS NN  S        L SL VLD   N + +     L   P  L  + L++N
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Query: 245 LFSGAIPQQ 253
            F+     Q
Sbjct: 259 DFACTCEHQ 267

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 55/318 (17%)
Query: 419 LGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLT 473
           +G +   A     L  LKE    F  +  +  G+ G +YKG  +  G  V    AI+ L 
Sbjct: 3   MGIRSGEAPNQALLRILKE--TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELR 60
Query: 474 FLKKYSIQNLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
             +  S +  K  LD    ++ + +PH+  LLG C+         T+ V L+ + +P G 
Sbjct: 61  --EATSPKANKEILDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGC 109
Query: 531 ----YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
                R H      + +L W       + +AK +++L    +       L   N+L+   
Sbjct: 110 LLDYVREHKDNIGSQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTP 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
           +  K++D+G++ ++   EK E   EG K    ++     + E+++  +   ++    DV+
Sbjct: 161 QHVKITDFGLAKLLGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVW 210
Query: 647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT 706
           ++G  + E +     +   +    +E++S   + G R    P+    C+ +   I+V   
Sbjct: 211 SYGVTVWELMT--FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV--- 260
Query: 707 NKCICPEPSSRPSFEDVL 724
            KC   +  SRP F +++
Sbjct: 261 -KCWMIDADSRPKFRELI 277

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 11  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 67  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G + +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +    V  I  KC   +  SRP 
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 267
Query: 720 FEDVL 724
           F +++
Sbjct: 268 FRELI 272

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
           L  LKE    F  +  +G G+ G +YKG  +  G  V    AI+ L   +  S +  K  
Sbjct: 11  LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
           LD    ++ + +PH+  LLG C+         T+ V L+ + +P G      R H     
Sbjct: 67  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
            + +L W       + +AK +++L    +       L   N+L+   +  K++D+G + +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
           +   EK E   EG K    ++     + E+++  +   ++    DV+++G  + E +   
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
             +   +    +E++S   + G R    P+    C+ +   I+V    KC   +  SRP 
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 267
Query: 720 FEDVL 724
           F +++
Sbjct: 268 FRELI 272

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL--- 493
             +NF+ +  +G+GS GK+   R+ E G   A++ L   K   +Q+  V      K    
Sbjct: 21  GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLK--KDVILQDDDVECTMTEKRILS 78
Query: 494 ---QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
               HP L  L   C ++        +++F V E++  G    H+ ++   +  +     
Sbjct: 79  LARNHPFLTQLFC-CFQT-------PDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYA 130
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
           A +I    A+ FLH     G     L  +N+LLD     KL+D+G+
Sbjct: 131 AEIIS---ALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGM 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	747
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-38
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-07
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	9e-38
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	6e-04
3soc_A	322	Activin receptor type-2A; structural genomics cons	6e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-27
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	8e-27
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-26
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-26
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-06
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-26
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-26
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	5e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-25
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	8e-25
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-17
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	7e-17
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	8e-17
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	8e-17
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-16
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-16
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-16
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-16
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-16
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	4e-16
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-16
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	8e-16
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	8e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	9e-16
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-15
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-15
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-15
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-15
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-15
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-15
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-15
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-15
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	4e-15
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	6e-15
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	7e-15
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	7e-15
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	8e-15
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	8e-15
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	8e-15
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-15
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-14
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-14
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	2e-14
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-14
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-14
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-14
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-14
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-14
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
4aoj_A	329	High affinity nerve growth factor receptor; transf	7e-14
3pls_A	298	Macrophage-stimulating protein receptor; protein k	9e-14
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-13
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-13
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-13
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	6e-13
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-12
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-12
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-12
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	8e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-11
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-11
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-11
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-11
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-11
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	3e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	5e-11
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	9e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-10
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-10
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-10
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	4e-10
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	4e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-10
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-10
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	8e-10
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-09
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-09
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	4e-09
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-09
3niz_A	311	Rhodanese family protein; structural genomics, str	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	6e-09
3o0g_A	292	Cell division protein kinase 5; kinase activator c	7e-09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	9e-09
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-08
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-08
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-08
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-08
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	3e-08
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	4e-08
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	7e-08
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	9e-08
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	9e-08
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-07
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-07
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-07
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	3e-07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-07
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-07
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	7e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	7e-07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-06
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	4e-06
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-06
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-06
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	6e-06
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	7e-06
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	7e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	8e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-05
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	3e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	3e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	4e-05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	5e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	5e-05
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-05
3an0_A	340	Dual specificity mitogen-activated protein kinase;	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	6e-05
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	7e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	7e-05
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	8e-05
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	8e-05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	8e-05
3fme_A	290	Dual specificity mitogen-activated protein kinase;	9e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	1e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-04
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-04
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	4e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	4e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	5e-04
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	5e-04
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	5e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	6e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  204 bits (522), Expect = 4e-60
 Identities = 105/330 (31%), Positives = 158/330 (47%), Gaps = 56/330 (16%)

Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLK--- 484
               L +L+EATNNFD    +G G  GK+YKG L +G  VA++        S Q ++   
Sbjct: 27  YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTPESSQGIEEFE 83

Query: 485 VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-ENCPENV 543
             ++ LS  +HPHLVSL+G C E             L+Y+Y+ NG+ + HL   + P   
Sbjct: 84  TEIETLSFCRHPHLVSLIGFCDERNEM--------ILIYKYMENGNLKRHLYGSDLPTMS 135

Query: 544 LKWSDRLAILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIME 601
           + W  RL I IG A+ +H+LH+ ++I     +R + + NILLDE+ + K++D+GIS    
Sbjct: 136 MSWEQRLEICIGAARGLHYLHTRAII-----HRDVKSINILLDENFVPKITDFGISKKGT 190

Query: 602 EHEK----LEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLED--DVYNFGFIL 652
           E ++       KG       G++              D     + +L +  DVY+FG +L
Sbjct: 191 ELDQTHLSTVVKGT-----LGYI--------------DPEYFIKGRLTEKSDVYSFGVVL 231

Query: 653 LESLVG--PIVTG--KGEAFLLNEMASFGSQDGR-RRIVDPVVLTTCSQESLSIVVSITN 707
            E L     IV    +    L  E A     +G+  +IVDP +      ESL        
Sbjct: 232 FEVLCARSAIVQSLPREMVNLA-EWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAV 290

Query: 708 KCICPEPSSRPSFEDVLWNLQYAAQVQATA 737
           KC+      RPS  DVLW L+YA ++Q + 
Sbjct: 291 KCLALSSEDRPSMGDVLWKLEYALRLQESV 320

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (421), Expect = 5e-46
 Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 14/225 (6%)

Query: 89  TLTRLTTLRVLSLVSLGIWG--PLPDKIHRLSSLELLDMSS-NFLFGAIPSGISRLVRLQ 145
           T T+   +  L L  L +    P+P  +  L  L  L +   N L G IP  I++L +L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 146 TLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK 205
            L +        +PD+   +  L  L    N L G  P SI  +  L  I    N +SG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 206 LPD-MSALTSLH-VLDLRENKLDSGLP-----LMPKGLVTVLLSRNLFSGAIPQQFGELA 258
           +PD   + + L   + +  N+L   +P     L    L  V LSRN+  G     FG   
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASVLFGSDK 221

Query: 259 QLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
             Q + L+ N L+      +    N++ L L +N + GTLP+ L+
Sbjct: 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  139 bits (354), Expect = 6e-37
 Identities = 58/225 (25%), Positives = 87/225 (38%), Gaps = 34/225 (15%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT- 146
             L+++ TL  L      + G LP  I  L +L  +    N + GAIP       +L T 
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
           +T+  N     +P  + +L NL  + L  N L+G              I ++ N L+  L
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLS 266
             +    +L+ LD                     L  N   G +PQ   +L  L  L++S
Sbjct: 238 GKVGLSKNLNGLD---------------------LRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 267 FNDLSG-IPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDS 310
           FN+L G IP     +L        A+N       K L CGS L +
Sbjct: 277 FNNLCGEIPQG--GNLQRFDVSAYANN-------KCL-CGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  134 bits (341), Expect = 4e-35
 Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 29/211 (13%)

Query: 108 GPLPDKIHRLSSLELLDMSSNFLFG--AIPSGISRLVRLQTLTM-DTNFFDDNVPDWWDS 164
           G L D   +   +  LD+S   L     IPS ++ L  L  L +   N     +P     
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLREN 223
           L+ L  L +    + G  P  + +I TL  +  S N LSG LP  +S+L +L  +     
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF--- 156

Query: 224 KLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQL-QHLDLSFNDLSG-IPPSVLFSL 281
                               N  SGAIP  +G  ++L   + +S N L+G IPP+   +L
Sbjct: 157 ------------------DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL 197

Query: 282 PNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
            N++++ L+ NML G              I 
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (272), Expect = 5e-26
 Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDN----VPDWWDSLSNLTVLSLKSNQLKGQF--PSSI 186
            I   +     L +    T+  +      + D       +  L L    L   +  PSS+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 187 CRIATLTDIAMSN-NELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRN 244
             +  L  + +   N L G +P  ++ LT LH L +                     +  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI---------------------THT 111

Query: 245 LFSGAIPQQFGELAQLQHLDLSFNDLSG-IPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
             SGAIP    ++  L  LD S+N LSG +PPS + SLPN+  +    N +SG +P   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSY 169

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.3 bits (212), Expect = 3e-18
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 164 SLSNLTVLS-------LKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL---PDMSALT 213
            L N T LS         +    G    +  +   + ++ +S   L         ++ L 
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76

Query: 214 SLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGI 273
            L+ L +                       N   G IP    +L QL +L ++  ++SG 
Sbjct: 77  YLNFLYIG--------------------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 274 PPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
            P  L  +  +  L  + N LSGTLP  +S    L  I+
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (431), Expect = 3e-44
 Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 13/232 (5%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKI---HRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
             +L +L VL L +  I G              L+ L +S N + G +   +SR V L+ 
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEF 204

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
           L + +N F   +P      S L  L +  N+L G F  +I     L  + +S+N+  G +
Sbjct: 205 LDVSSNNFSTGIPFLG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 207 PDMSALTSLHVLDLRENKLDSGLPL----MPKGLVTVLLSRNLFSGAIPQQFGELAQLQH 262
           P    L SL  L L ENK    +P         L  + LS N F GA+P  FG  + L+ 
Sbjct: 264 PP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322

Query: 263 LDLSFNDLSG-IPPSVLFSLPNISYLHLASNMLSGTLPKDLS-CGSKLDSIS 312
           L LS N+ SG +P   L  +  +  L L+ N  SG LP+ L+   + L ++ 
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  161 bits (411), Expect = 1e-41
 Identities = 77/246 (31%), Positives = 113/246 (45%), Gaps = 17/246 (6%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGIS-RLVRLQTL 147
            ++  T L++L++ S    GP+P     L SL+ L ++ N   G IP  +S     L  L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKL 206
            +  N F   VP ++ S S L  L+L SN   G+ P  ++ ++  L  + +S NE SG+L
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

Query: 207 PD--MSALTSLHVLDLRENKLDSGLP-----LMPKGLVTVLLSRNLFSGAIPQQFGELAQ 259
           P+   +   SL  LDL  N     +           L  + L  N F+G IP      ++
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 260 LQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKF 319
           L  L LSFN LSG  PS L SL  +  L L  NML G +P++L     L        +  
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL------ETLIL 473

Query: 320 GGNCLS 325
             N L+
Sbjct: 474 DFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  157 bits (400), Expect = 3e-40
 Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 4/226 (1%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
           TL+  + L  L L    + G +P  +  LS L  L +  N L G IP  +  +  L+TL 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
           +D N     +P    + +NL  +SL +N+L G+ P  I R+  L  + +SNN  SG +P 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 209 -MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSF 267
            +    SL  LDL  N  +  +P       +  ++ N  +G            +    + 
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 268 ND--LSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSI 311
           N     GI    L  L   +  ++ S +  G           +  +
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  153 bits (389), Expect = 6e-39
 Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 10/218 (4%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
             + RL  L +L L +    G +P ++    SL  LD+++N   G IP+ + +     + 
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SG 563

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSN--QLKGQFPSSICRIATLTDIAMSNNELSGK 205
            +  NF       +  +           N  + +G     + R++T     +++    G 
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 206 LPD-MSALTSLHVLDLRENKLDSGLPL---MPKGLVTVLLSRNLFSGAIPQQFGELAQLQ 261
                    S+  LD+  N L   +P        L  + L  N  SG+IP + G+L  L 
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683

Query: 262 HLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
            LDLS N L G  P  + +L  ++ + L++N LSG +P
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (385), Expect = 2e-38
 Identities = 69/302 (22%), Positives = 116/302 (38%), Gaps = 55/302 (18%)

Query: 4   SQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKE 63
            +   L+  +  L   + L  W +   + C         +TC+D+ VT + +        
Sbjct: 12  REIHQLISFKDVLPDKNLLPDWSS-NKNPCTFDG-----VTCRDDKVTSIDLSS------ 59

Query: 64  NTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELL 123
                           +    +  ++L  LT L  L L +  I G +       +SL  L
Sbjct: 60  -------------KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 124 DMSSNFLFGAIPSG--ISRLVRLQTLTMDTNFFDDNVPD-WWDSLSNLTVLSLKSNQLKG 180
           D+S N L G + +   +     L+ L + +N  D          L++L VL L +N + G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 181 QFPSSICRIAT---LTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLV 237
                         L  +A+S N++SG +  +S   +L  LD+                 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDV----------------- 207

Query: 238 TVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT 297
               S N FS  IP   G+ + LQHLD+S N LSG     + +   +  L+++SN   G 
Sbjct: 208 ----SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262

Query: 298 LP 299
           +P
Sbjct: 263 IP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (384), Expect = 3e-38
 Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 18/246 (7%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
             TL+ L L + G  G +P  +   S L  L +S N+L G IPS +  L +L+ L +  N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSA 211
             +  +P     +  L  L L  N L G+ PS +     L  I++SNN L+G++P  +  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 212 LTSLHVLDLRENKLDSGLPL----MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSF 267
           L +L +L L  N     +P         L+ + L+ NLF+G IP    + +      ++ 
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQS----GKIAA 567

Query: 268 NDLSGIPPSVLFSLPNISYLHLASNM--LSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS 325
           N ++G     + +       H A N+    G   + L+       +S +           
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN------RLSTRNPCNITSRVYG 621

Query: 326 YDTPSQ 331
             T   
Sbjct: 622 GHTSPT 627

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (371), Expect = 1e-36
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 12/222 (5%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
            L+  T L  +SL +  + G +P  I RL +L +L +S+N   G IP+ +     L  L 
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNN--ELSGKL 206
           ++TN F+  +P      S      + +N + G+    I       +   + N  E  G  
Sbjct: 545 LNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 207 P-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL---LSRNLFSGAIPQQFGELAQLQH 262
              ++ L++ +  ++                 +++   +S N+ SG IP++ G +  L  
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660

Query: 263 LDLSFNDLSG-IPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
           L+L  ND+SG IP   +  L  ++ L L+SN L G +P+ +S
Sbjct: 661 LNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMS 701

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 6e-21
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 27/151 (17%)

Query: 164 SLSNLTVLSLKSNQLK---GQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDL 220
               +T + L S  L        SS+  +  L  + +SN+ ++G +       SL  LDL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 221 RENKLDSGLPLMPKGLVTVLLSRNLFSGAIP--QQFGELAQLQHLDLSFNDLSG-IPPSV 277
                                SRN  SG +      G  + L+ L++S N L      S 
Sbjct: 108 ---------------------SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146

Query: 278 LFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
              L ++  L L++N +SG            
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.3 bits (230), Expect = 2e-19
 Identities = 46/145 (31%), Positives = 65/145 (44%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
           L RL+T    ++ S    G          S+  LDMS N L G IP  I  +  L  L +
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
             N    ++PD    L  L +L L SN+L G+ P ++  +  LT+I +SNN LSG +P+M
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

Query: 210 SALTSLHVLDLRENKLDSGLPLMPK 234
               +        N    G PL   
Sbjct: 724 GQFETFPPAKFLNNPGLCGYPLPRC 748

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  145 bits (367), Expect = 1e-38
 Identities = 62/180 (34%), Positives = 87/180 (48%), Gaps = 26/180 (14%)

Query: 428 RTFYLEELKEATNNFDS------LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKY-SI 480
            +F   ELK  TNNFD        + MGEG  G +YKG + N T VA++ L  +    + 
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71

Query: 481 QNLK---VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE 537
           +  +     +  ++K QH +LV LLG   +         + + LVY Y+PNGS    LS 
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSDG--------DDLCLVYVYMPNGSLLDRLSC 123

Query: 538 NCPENVLKWSDRLAILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYG 595
                 L W  R  I  G A  ++FLH    I     +R + + NILLDE   AK+SD+G
Sbjct: 124 LDGTPPLSWHMRCKIAQGAANGINFLHENHHI-----HRDIKSANILLDEAFTAKISDFG 178

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 644 DVYNFGFILLESLVG--PIVTGKGEAFLLNEMASFGSQDGRR--RIVDPVVLTTCSQESL 699
           D+Y+FG +LLE + G   +   +    LL ++      + +     +D   +      S+
Sbjct: 216 DIYSFGVVLLEIITGLPAVDEHREPQLLL-DIKEEIEDEEKTIEDYIDKK-MNDADSTSV 273

Query: 700 SIVVSITNKCICPEPSSRPSFEDVLWNLQY 729
             + S+ ++C+  + + RP  + V   LQ 
Sbjct: 274 EAMYSVASQCLHEKKNKRPDIKKVQQLLQE 303

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  142 bits (361), Expect = 9e-38
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 26/178 (14%)

Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLK--- 484
           + F L EL+ A++NF + + +G G  GK+YKGRL +GT VA++    LK+   Q  +   
Sbjct: 18  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKR---LKEERTQGGELQF 74

Query: 485 -VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN- 542
              ++ +S   H +L+ L G C+           +  LVY Y+ NGS  + L E      
Sbjct: 75  QTEVEMISMAVHRNLLRLRGFCMTP--------TERLLVYPYMANGSVASCLRERPESQP 126

Query: 543 VLKWSDRLAILIGVAKAVHFLH----SSVISGSFSNR-LTTNNILLDEHRIAKLSDYG 595
            L W  R  I +G A+ + +LH      +I     +R +   NILLDE   A + D+G
Sbjct: 127 PLDWPKRQRIALGSARGLAYLHDHCDPKII-----HRDVKAANILLDEEFEAVVGDFG 179

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 644 DVYNFGFILLESLVGPIVTGK----------GEAFLLNEMASFGSQDGR-RRIVDPVVLT 692
           DV+ +G +LLE     ++TG+           +  +L +      ++ +   +VD  +  
Sbjct: 217 DVFGYGVMLLE-----LITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQG 271

Query: 693 TCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
               E +  ++ +   C    P  RP   +V+
Sbjct: 272 NYKDEEVEQLIQVALLCTQSSPMERPKMSEVV 303

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  134 bits (339), Expect = 6e-35
 Identities = 55/322 (17%), Positives = 113/322 (35%), Gaps = 48/322 (14%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS 491
            E L   +     L     G  G ++K +L    YVA++      K S QN +  +  L 
Sbjct: 16  TENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQSWQN-EYEVYSLP 73

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
            ++H +++  +G          S    ++L+  +   GS    L  N    V+ W++   
Sbjct: 74  GMKHENILQFIGAEKRG----TSVDVDLWLITAFHEKGSLSDFLKAN----VVSWNELCH 125

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-------LTTNNILLDEHRIAKLSDYGISIIMEE-H 603
           I   +A+ + +LH  +      ++       + + N+LL  +  A ++D+G+++  E   
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGK 185

Query: 604 EKLEAKGEGPKARY-------GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
              +  G+    RY       G +   R +   +             D+Y  G +L E  
Sbjct: 186 SAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRI-------------DMYAMGLVLWELA 232

Query: 657 VG-PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVL---------TTCSQESLSIVVSIT 706
                  G  + ++L      G       + + VV                 ++++    
Sbjct: 233 SRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETI 292

Query: 707 NKCICPEPSSRPSFEDVLWNLQ 728
            +C   +  +R S   V   + 
Sbjct: 293 EECWDHDAEARLSAGCVGERIT 314

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (348), Expect = 5e-34
 Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 11/223 (4%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
            T    T L  L L+S  I     +   +  +L  LD+S N L         +L  LQ L
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150

Query: 148 TMDTNFFDDNVPDWWDSLSN--LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK 205
            +  N       +  D  +N  L  L L SNQ+K   P     I  L  + ++N +L   
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 206 LPDM----SALTSLHVLDLRENKL-----DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGE 256
           L +      A TS+  L L  ++L      + L L    L  + LS N  +      F  
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
           L QL++  L +N++  +    L  L N+ YL+L  +    ++ 
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 3e-32
 Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 17/245 (6%)

Query: 74  NQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGA 133
           + T   + + ++FV+     + L +L+L    I     D    L  LE+LD+  N +   
Sbjct: 363 SFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 134 IPSG-ISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG--QFPSSICRIA 190
           +       L  +  + +  N +     + +  + +L  L L+   LK     PS    + 
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 191 TLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKG-----------LVT 238
            LT + +SNN ++    D +  L  L +LDL+ N L         G           L  
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 239 VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTL 298
           + L  N F     + F +L +L+ +DL  N+L+ +P SV  +  ++  L+L  N+++   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 299 PKDLS 303
            K   
Sbjct: 601 KKVFG 605

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (320), Expect = 2e-30
 Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 11/236 (4%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
              TR + L  L +    I    P+   +L  L++L++  N L        +    L  L
Sbjct: 43  ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP 207
            + +N       + +    NL  L L  N L      +  ++  L ++ +SNN++     
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 208 DM---SALTSLHVLDLRENKLDSGLPLMPKG---LVTVLLSRNLFSGAIPQQFGE---LA 258
           +     A +SL  L+L  N++    P        L  + L+      ++ ++        
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222

Query: 259 QLQHLDLSFNDLSGIPPSVLFSL--PNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
            +++L LS + LS    +    L   N++ L L+ N L+       +   +L+   
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (316), Expect = 6e-30
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF 153
            +  V     L +   +PD +   +++ +L+++ N L     +  +R  +L +L +  N 
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 154 FDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SAL 212
                P+    L  L VL+L+ N+L      +      LT++ + +N +     +     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 213 TSLHVLDLRENKLDSGLPLMP----KGLVTVLLSRNLFSGAIPQQFG--ELAQLQHLDLS 266
            +L  LDL  N L S   L      + L  +LLS N       ++      + L+ L+LS
Sbjct: 121 KNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 267 FNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSI 311
            N +    P    ++  +  L L +  L  +L + L       SI
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (307), Expect = 6e-29
 Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 26/258 (10%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF---------LFGAIPSGIS 139
           +   L  L    L    I       +H L ++  L++  +F         L         
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 140 RLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSI----CRIATLTDI 195
            L  L+ L M+ N       + +  L NL  LSL ++    +  ++        + L  +
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 196 AMSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMP----KGLVTVLLSRNLFSGAI 250
            ++ N++S    D  S L  L VLDL  N++   L        + +  + LS N +    
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 251 PQQFGELAQLQHLDLSFNDLSGIP--PSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
              F  +  LQ L L    L  +   PS    L N++ L L++N ++      L    KL
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 309 DSISDKRVVKFGGNCLSY 326
                  ++    N L+ 
Sbjct: 507 ------EILDLQHNNLAR 518

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  119 bits (300), Expect = 4e-28
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 18/222 (8%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGIS-- 139
           ++ S    +   ++L+ L L S  I    P   H +  L  L +++  L  ++   +   
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 140 -RLVRLQTLTMDTNFFDDNVPDWWDSL--SNLTVLSLKSNQLKGQFPSSICRIATLTDIA 196
                ++ L++  +         +  L  +NLT+L L  N L      S   +  L    
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 197 MSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFG 255
           +  N +          L ++  L+L+ +                 +S           F 
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRS------------FTKQSISLASLPKIDDFSFQ 326

Query: 256 ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT 297
            L  L+HL++  ND+ GI  ++   L N+ YL L+++  S  
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (250), Expect = 6e-22
 Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL--FGAIPSGISRLVRLQ 145
                L  +  + L          +    + SL+ L +    L    + PS    L  L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 146 TLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL--------KGQFPSSICRIATLTDIAM 197
            L +  N   +   D  + L  L +L L+ N L         G     +  ++ L  + +
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 198 SNNELSGKLPDM-SALTSLHVLDLRENKLDSGLP----LMPKGLVTVLLSRNLFSGAIPQ 252
            +N       ++   L  L ++DL  N L + LP         L ++ L +NL +    +
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 253 QFGE-LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS 306
            FG     L  LD+ FN       S+      +++++     +   L     C +
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESI---AWFVNWINETHTNIPE-LSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.7 bits (184), Expect = 5e-14
 Identities = 26/100 (26%), Positives = 40/100 (40%)

Query: 213 TSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
            S  V D    KL      +P  +  + L+ N         F   +QL  LD+ FN +S 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 273 IPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
           + P +   LP +  L+L  N LS    K  +  + L  + 
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  133 bits (336), Expect = 1e-32
 Identities = 50/217 (23%), Positives = 81/217 (37%), Gaps = 9/217 (4%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
           L  L  L  LS   L   G         +SL+ LD+S N +   + S    L +L+ L  
Sbjct: 346 LPSLEFLD-LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 150 DTNFFDDNVPDW-WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
             +          + SL NL  L +     +  F      +++L  + M+ N        
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 209 --MSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
              + L +L  LDL + +L+   P        L  + +S N F       +  L  LQ L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 264 DLSFNDLSGIPPSVLFSLP-NISYLHLASNMLSGTLP 299
           D S N +       L   P ++++L+L  N  + T  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (320), Expect = 1e-30
 Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 11/219 (5%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL--FGAIPSGISRLVRLQTLTMD 150
           L +L+ L+  S             L SLE LD+S N L   G           L+ L + 
Sbjct: 324 LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSI-CRIATLTDIAMSNNELSGKLPDM 209
            N     +   +  L  L  L  + + LK     S+   +  L  + +S+         +
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 210 -SALTSLHVLDLRENKL-DSGLPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLD 264
            + L+SL VL +  N   ++ LP +   L  +T L LS+       P  F  L+ LQ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 265 LSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
           +S N+   +       L ++  L  + N +  +  ++L 
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (312), Expect = 1e-29
 Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 12/206 (5%)

Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ 177
            S + LD+S N L             LQ L +            + SLS+L+ L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 178 LKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLHVLDLRENKLDSG-----LPL 231
           ++     +   +++L  +      L+         L +L  L++  N + S         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 232 MPKGLVTVLLSRNLFSGAIPQQFGELAQLQ----HLDLSFNDLSGIPPSVLFSLPNISYL 287
           +   L  + LS N            L Q+      LDLS N ++ I P   F    +  L
Sbjct: 148 LTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKL 205

Query: 288 HLASNMLSGTLPKDLSCGSKLDSISD 313
            L +N  S  + K    G     +  
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHR 231

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (305), Expect = 8e-29
 Identities = 46/258 (17%), Positives = 80/258 (31%), Gaps = 20/258 (7%)

Query: 80  SFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGIS 139
            + +D  +     LT +   SLVS+ I              + L++ +            
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF-----GQFP 320

Query: 140 RLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL--KGQFPSSICRIATLTDIAM 197
            L       +               L +L  L L  N L  KG    S     +L  + +
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 198 SNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP----KGLVTVLLSRNLFSGAIPQQ 253
           S N +     +   L  L  LD + + L            + L+ + +S      A    
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 254 FGELAQLQHLDLSFNDLSG-IPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
           F  L+ L+ L ++ N       P +   L N+++L L+   L    P   +  S L    
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---- 496

Query: 313 DKRVVKFGGNCLSYDTPS 330
             +V+    N        
Sbjct: 497 --QVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (293), Expect = 3e-27
 Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 11/213 (5%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF 153
            + + L L    +             L++LD+S   +          L  L TL +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 154 FDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPDM-SA 211
                   +  LS+L  L      L       I  + TL ++ +++N + S KLP+  S 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 212 LTSLHVLDLRENKLDS-------GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLD 264
           LT+L  LDL  NK+ S        L  MP   +++ LS N  +   P  F E+ +L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 265 LSFNDLSG-IPPSVLFSLPNISYLHLASNMLSG 296
           L  N  S  +  + +  L  +    L       
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (266), Expect = 5e-24
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 13/234 (5%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTL 147
           +    T+L+ L L   G+   +      L  LE LD   + L       +   L  L  L
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQF-PSSICRIATLTDIAMSNNELSGKL 206
            +            ++ LS+L VL +  N  +  F P     +  LT + +S  +L    
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 207 PDM-SALTSLHVLDLRENKLDSGLPLMP----KGLVTVLLSRNLFSGAIPQQFGELA-QL 260
           P   ++L+SL VL++  N     L   P      L  +  S N    +  Q+       L
Sbjct: 487 PTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 261 QHLDLSFNDLSGIPPSVLFS--LPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
             L+L+ ND +       F   + +   L +    +    P D   G  + S++
Sbjct: 546 AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ-GMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (266), Expect = 5e-24
 Identities = 38/240 (15%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL-FGAIPSGISRLVRLQTL 147
             + L++L+ L  V   +       I  L +L+ L+++ N +    +P   S L  L+ L
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 148 TMDTNFFDDNVPDWWDSLSNLTV----LSLKSNQLKGQFPSSICRIATLTDIAMSNNELS 203
            + +N            L  + +    L L  N +         +   L  + + NN  S
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDS 213

Query: 204 GKLPDMS--ALTSLHVLDLRENKLDSGLPLMP------KGLVTVLLSRN------LFSGA 249
             +       L  L V  L   +  +   L        +GL  + +          +   
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD 309
           I   F  L  +    L    +  +            +L L +          L    +L 
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKLKSLKRLT 331

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (266), Expect = 5e-24
 Identities = 47/240 (19%), Positives = 79/240 (32%), Gaps = 15/240 (6%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
            +      L+VL L    I          LS L  L ++ N +        S L  LQ L
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG-QFPSSICRIATLTDIAMSNNELSGKL 206
                            L  L  L++  N ++  + P     +  L  + +S+N++    
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 207 P-DMSALTSLHV----LDLRENKLDSGLPLMPKG--LVTVLLSRNLFSGAIPQQ-FGELA 258
             D+  L  + +    LDL  N ++   P   K   L  + L  N  S  + +     LA
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 259 QLQHLDLSFNDLSG------IPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
            L+   L   +            S L  L N++        L   L   +   + L ++S
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.0 bits (216), Expect = 6e-18
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 22/223 (9%)

Query: 89  TLTRLTTLRVLSLVSLGIWG-PLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQ-- 145
            +  L TL+ L++    I    LP+    L++LE LD+SSN +     + +  L ++   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 146 --TLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT---LTDIAMSNN 200
             +L +  N  +  +         L  L+L++N        +  +      +  + +   
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 201 ELSGKLPD-----MSALTSLHVLDLRENKLDSGLPLMP------KGLVTVLLSRNLFSGA 249
              G L       +  L +L + + R   LD  L  +         + +  L        
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
               +      QHL+L        P   L SL  +++      
Sbjct: 298 KDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 29/184 (15%)

Query: 89  TLTRLTTLRVLSLVS-LGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
               L++L VL +         LPD    L +L  LD+S   L    P+  + L  LQ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP 207
            M  N F       +  L++L VL    N +       +                     
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF------------------ 541

Query: 208 DMSALTSLHVLDLRENKLDSGLPLMP-----KGLVTVLLSRNLFSGAIPQQFGELAQLQH 262
                +SL  L+L +N               K    +L+       A P     +  +  
Sbjct: 542 ----PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLS 596

Query: 263 LDLS 266
           L+++
Sbjct: 597 LNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 22/92 (23%), Positives = 30/92 (32%)

Query: 217 VLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS 276
                E         +P     + LS N         F    +LQ LDLS  ++  I   
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 277 VLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
              SL ++S L L  N +        S  S L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  130 bits (329), Expect = 8e-32
 Identities = 45/265 (16%), Positives = 83/265 (31%), Gaps = 39/265 (14%)

Query: 77  LSESFSIDSFVTTLTRLTT--LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAI 134
                   +FV    R     L    + S      +            +   SN +   +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198

Query: 135 PSGISRLVRLQTLTMDTNFFDD-------------------NVPDWWDSLSNLTVLSLKS 175
              + RL +L+   M  + F                          WD+L +LT + + +
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSG---------KLPDMSALTSLHVLDLRENKLD 226
                + P+ +  +  +  I ++ N              L D      + ++ +  N L 
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 227 SG-----LPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSL 281
           +      L  M K L  +    N   G +P  FG   +L  L+L++N ++ IP +     
Sbjct: 319 TFPVETSLQKMKK-LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT 376

Query: 282 PNISYLHLASNMLSGTLPKDLSCGS 306
             +  L  A N L   +P      S
Sbjct: 377 EQVENLSFAHNKLK-YIPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (321), Expect = 1e-30
 Identities = 39/255 (15%), Positives = 84/255 (32%), Gaps = 30/255 (11%)

Query: 69  GHPIPNQTLSESFSIDSFVTTL----TRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLD 124
              I     +E+        T       L  L  + + +      LP  +  L  ++L++
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 125 MSSNFL--------FGAIPSGISRLVRLQTLTMDTNFFDD-NVPDWWDSLSNLTVLSLKS 175
           ++ N               +      ++Q + +  N      V      +  L +L    
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMP 233
           NQL+G    +      L  + ++ N+++  +P         +  L    NKL   +P + 
Sbjct: 340 NQLEG-KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL-KYIPNIF 396

Query: 234 -----KGLVTVLLSRNLFSG-------AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSL 281
                  +  +  S N            +     +   +  ++LS N +S  P  +  + 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 282 PNISYLHLASNMLSG 296
             +S ++L  NML+ 
Sbjct: 457 SPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (320), Expect = 1e-30
 Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 31/221 (14%)

Query: 109 PLPDKIHRLSSLELLDMSSNFL-------FGAIPSGISRLVRLQTLTMDTNFFDDNVPDW 161
           P       +S +  +D S N +       F  +     + + + ++ +  N       + 
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 162 WDSLSNLTVLSLKSNQLKG-------QFPSSICRIATLTDIAMSNNELSGKLPD---MSA 211
           + + S L+ ++L  N L             +      LT I +  N+L+  L D    + 
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATT 511

Query: 212 LTSLHVLDLRENKLDSGLPLMPKGLVT---------VLLSRNLFSGAIPQQFGELAQLQH 262
           L  L  +DL  N   S  P  P    T              N      P+       L  
Sbjct: 512 LPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 263 LDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
           L +  ND+  +   +    PNIS L +  N         + 
Sbjct: 571 LQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVC 608

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (310), Expect = 2e-29
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 9/230 (3%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFG----AIPSGISRLVRL 144
           +L     +  LSL   G  G +PD I +L+ LE+L + S+          P GIS  +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 145 QTLTMDTNFFDDNVPDW--WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL 202
           +        +     D+   +  S+L    + S+  +     S       T I   +N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 203 SGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQH 262
           +     +  LT L    +  +   +      +                  ++  L  L  
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 263 LDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
           +++         P+ L +LP +  +++A N       +       L    
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADAP 302

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (299), Expect = 4e-28
 Identities = 43/288 (14%), Positives = 97/288 (33%), Gaps = 61/288 (21%)

Query: 76  TLSESFSIDSFVTTLTRLTTLRVL-----SLVSLGIWGPLPDKIHRLSSLELLDMSSNFL 130
           +  +       +        ++++     +L +     P+   + ++  L +L+   N L
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT----FPVETSLQKMKKLGMLECLYNQL 342

Query: 131 FGAIPSGISRLVRLQTLTMDTNFF-------------------DDN----VPDWWD--SL 165
            G +P+     ++L +L +  N                       N    +P+ +D  S+
Sbjct: 343 EGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 166 SNLTVLSLKSNQLKG-------QFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLHV 217
           S ++ +    N++             +  +   ++ I +SNN++S    ++ S  + L  
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 218 LDLRENKLDSGLPLMP-----------KGLVTVLLSRNLFSGAIPQ-QFGELAQLQHLDL 265
           ++L  N L + +P                L ++ L  N  +      +   L  L  +DL
Sbjct: 462 INLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 266 SFNDLSGIPPSV-----LFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
           S+N  S  P        L      +      N      P+ ++    L
Sbjct: 521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (276), Expect = 4e-25
 Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 26/236 (11%)

Query: 79  ESFSIDSFVTTLTRLTTLRV----LSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAI 134
           +         +++ ++ +      +  V    + PL     +  ++  +++S+N +    
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 135 PSGISRLVRLQTLTMDTNFFDD-------NVPDWWDSLSNLTVLSLKSNQLKGQFPSSI- 186
               S    L ++ +  N   +       +  + + +   LT + L+ N+L         
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFR 508

Query: 187 -CRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL---MP------KGL 236
              +  L  I +S N  S         ++L    +R  +   G       P        L
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 237 VTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
             + +  N     + ++      +  LD+  N    I  S +          L  +
Sbjct: 569 TQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 110 LPDKIHRLSSLELL------DMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWD 163
            P +    S+L+        D   N      P GI+    L  L + +N     V +   
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK-- 584

Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS 203
              N++VL +K N       S +C         +  ++  
Sbjct: 585 ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  125 bits (316), Expect = 1e-31
 Identities = 59/329 (17%), Positives = 109/329 (33%), Gaps = 61/329 (18%)

Query: 433 EELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLK-----VRL 487
            E     +N   L  +G G  G +YKG L +   VA+      K +S  N +       +
Sbjct: 6   SEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAV------KVFSFANRQNFINEKNI 58

Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
             +  ++H ++   +       +          LV EY PNGS    L +    +   W 
Sbjct: 59  YRVPLMEHDNIARFIVGDERVTADGRME---YLLVMEYYPNGS----LXKYLSLHTSDWV 111

Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR------LTTNNILLDEHRIAKLSDYGISIIME 601
               +   V + + +LH+ +  G           L + N+L+       +SD+G+S+ + 
Sbjct: 112 SSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLT 171

Query: 602 EHEKLEAKGE--GPKARYGFLFICRTS-------AENVVIVVDIQRTKLEDDVYNFGFIL 652
            +  +    E     +  G      T         E  V + D +    + D+Y  G I 
Sbjct: 172 GNRLVRPGEEDNAAISEVG------TIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIY 225

Query: 653 LESLVGPIVTGKGE-------AF--------LLNEMASFGSQDGRRRIVDPVVLTTCSQE 697
            E  +       GE       AF           +M    S++ +R    P       + 
Sbjct: 226 WEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQR----PKFPEAWKEN 281

Query: 698 S--LSIVVSITNKCICPEPSSRPSFEDVL 724
           S  +  +      C   +  +R + +   
Sbjct: 282 SLAVRSLKETIEDCWDQDAEARLTAQXAE 310

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (313), Expect = 1e-29
 Identities = 36/243 (14%), Positives = 80/243 (32%), Gaps = 26/243 (10%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
           T           +      +         L  L  +++ +      +P  +  L  LQ+L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 148 TMDTNFFDD---------NVPDWWDSLSNLTVLSLKSNQLKG-QFPSSICRIATLTDIAM 197
            +  N              + D  D+   + +  +  N L+     +S+ ++  L  +  
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 198 SNNELSGKLPDMSALTSLHVLDLRENKLDSGLP-----LMPKGLVTVLLSRNLFSGAIPQ 252
            +N++   L        L  L L  N++   +P        + +  +  S N     IP 
Sbjct: 581 VHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQ-VEGLGFSHNKLKY-IPN 636

Query: 253 --QFGELAQLQHLDLSFNDLSGIPPSVLFSLP-----NISYLHLASNMLSGTLPKDLSCG 305
                 +  +  +D S+N +     ++  S+      N S + L+ N +     +  + G
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 306 SKL 308
           S +
Sbjct: 697 SPI 699

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (312), Expect = 2e-29
 Identities = 39/253 (15%), Positives = 77/253 (30%), Gaps = 30/253 (11%)

Query: 75  QTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWG------PLPDKIHRLSSLELLDMSSN 128
                     +    +  +     +SL    I         +   I RL+ L+++  +++
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 129 FLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICR 188
                  +  +  V  +    D     +N    W +L +LT + L +     Q P  +  
Sbjct: 459 PF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 189 IATLTDIAMSNNELSG---------KLPDM-SALTSLHVLDLRENKLDSGLPLMP----- 233
           +  L  + ++ N             +L D       + +  +  N L    P        
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKM 572

Query: 234 KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM 293
             L  +    N       + FG   +L  L L +N +  IP         +  L  + N 
Sbjct: 573 VKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630

Query: 294 LSGTLPKDLSCGS 306
           L   +P   +  S
Sbjct: 631 LK-YIPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (300), Expect = 7e-28
 Identities = 39/252 (15%), Positives = 94/252 (37%), Gaps = 29/252 (11%)

Query: 74  NQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL--- 130
           +     +   ++   + + L  L  + L +      LPD ++ L  L+ L+++ N     
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 131 ------FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWD--SLSNLTVLSLKSNQLKGQF 182
                 +  +        ++Q   M  N   +  P       +  L +L    N+++   
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVR--H 587

Query: 183 PSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMP-----KG 235
             +      LTD+ +  N++   +P+   +    +  L    NKL   +P +        
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYV 645

Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHL-----DLSFNDLSGIPPSVLFSLPNISYLHLA 290
           + +V  S N            +   + +      LS+N++   P  +  +   IS + L+
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 291 SNMLSGTLPKDL 302
           +N+++ ++P++ 
Sbjct: 706 NNLMT-SIPENS 716

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (293), Expect = 5e-27
 Identities = 34/230 (14%), Positives = 63/230 (27%), Gaps = 8/230 (3%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIP-SGISRLVRLQTL 147
            L     +  LSL   G  G +PD I +L+ L++L   ++    +    G   L    + 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLK-----GQFPSSICRIATLTDIAMSNNEL 202
                        + D    L +  L  + +                   T I    N +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 203 SGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQH 262
           +     +  LT L ++    +   +   +                      +  L  L  
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPF-TYDNI-AVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 263 LDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
           ++L         P  L+ LP +  L++A N                D   
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (277), Expect = 3e-25
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 36/232 (15%)

Query: 90  LTRLTTLRVLSL-----VSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRL 144
              +  +  +        S G         ++  +   + +S N +        +    +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 145 QTLTMDTNFFDD-------NVPDWWDSLSNLTVLSLKSNQLKGQFPSSI--CRIATLTDI 195
            T+ +  N                + +   LT + L+ N+L            +  L+++
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758

Query: 196 AMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQF 254
            +S N  S   P      + L    +R  +                   N      P   
Sbjct: 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD---------------AEGNRILRQWPTGI 802

Query: 255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS 306
                L  L +  ND+  +   +    P +  L +A N    ++     C  
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNI-SIDVTSVCPY 850

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 28/220 (12%), Positives = 61/220 (27%), Gaps = 42/220 (19%)

Query: 92  RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL-------FGAIPSGISRLVRL 144
           +      ++L    I     +     S +  + +S+N +                    L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 145 QTLTMDTNFFDDNVPD--WWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDI------A 196
            T+ +  N    ++ D     +L  L+ + +  N     FP+     + L          
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 197 MSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFG 255
              N +  + P  ++   SL  L +  N +                        + ++  
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK----------------------VDEKL- 825

Query: 256 ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
              QL  LD++ N    I  + +          L  +   
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 23/228 (10%), Positives = 59/228 (25%), Gaps = 35/228 (15%)

Query: 116 RLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
           +L+    + +        I    +     + L      +     +      N    + + 
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKEL 308

Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPK 234
           +    Q    +     +T ++++     G++PD +  LT L VL    +       L   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 235 G---LVTVLLSRNLFSGAIPQQFGELAQ-LQHLDLSFNDLSGIP---------------- 274
                      ++       + F +  Q L   DL  + ++  P                
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 275 ------------PSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDS 310
                          +  L  +  ++ A++  +      +        
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-DNIAVDWEDANSD 475

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 4/131 (3%)

Query: 188 RIATLTDIAMSNNELSGKLPDMSALTSLH-VLDLRENKLDSGLPLMPKGLVT--VLLSRN 244
           ++    ++ +   E +  + D  AL ++   LD +  +  SG        +        +
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELD 309

Query: 245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC 304
           ++            ++  L L+     G  P  +  L  +  L   ++  +    +    
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGD 368

Query: 305 GSKLDSISDKR 315
                 +S++R
Sbjct: 369 EELTPDMSEER 379

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (293), Expect = 3e-27
 Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 11/238 (4%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSG-ISR 140
            +    + L  L+TL+ L L +               SL  L +  N     + +G +  
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 141 LVRLQTLTMDTNFFD--DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMS 198
           L  L+ L +  +  +  D       +LS+L  L+L  N+       +      L  + ++
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 199 NNELSGKLPDM--SALTSLHVLDLRENKLDSGLPLMPKGLV--TVL-LSRNLFSGAIPQQ 253
              L  K        L  L VL+L  + LD     +  GL     L L  N F     Q+
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 254 ---FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
                 L +L+ L LSF DLS I      SL  ++++ L+ N L+ +  + LS    +
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (280), Expect = 9e-26
 Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 16/234 (6%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPD-----KIHRLSSLELLDMSSNFLFGAIPS 136
            I             + L+         +        I  L      DM    +  A+  
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 137 GISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIA 196
           G+  +  ++++ +  ++F +   + +   S L  L L +  L  + PS +  ++TL  + 
Sbjct: 250 GLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 197 MSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPL-----MPKGLVTVLLSRN--LFSG 248
           +S N+         S   SL  L ++ N     L       +   L  + LS +    S 
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN-LRELDLSHDDIETSD 366

Query: 249 AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
               Q   L+ LQ L+LS+N+   +        P +  L LA   L     +  
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (280), Expect = 1e-25
 Identities = 44/225 (19%), Positives = 76/225 (33%), Gaps = 12/225 (5%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
            L+    L+ L  +  GI       +H   +LE L + SN +            +L+ L 
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 149 MDTNFFDDNVPDWWDSLSNLTV--LSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
              N       +   SL   T   L+L  N + G         A    +     +    +
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 207 PDM---SALTSLHVLDLRENKLDSGLPLMPKG-----LVTVLLSRNLFSGAIPQQFGELA 258
                 S + SL +    +   +   P + +G     + ++ L ++ F       F   +
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 259 QLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
            LQ LDL+   LS +P   L  L  +  L L++N          S
Sbjct: 279 GLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISAS 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (278), Expect = 2e-25
 Identities = 47/219 (21%), Positives = 77/219 (35%), Gaps = 11/219 (5%)

Query: 89  TLTRLTTLRVLSLVS--LGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
            L  L  LR L L    +        ++  LS L+ L++S N              +L+ 
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 147 LTMDTNFFDDNVPD-WWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK 205
           L +             + +L  L VL+L  + L          +  L  + +  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 206 LPDMSA----LTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELA 258
               +     L  L +L L    L S         K +  V LS N  + +  +    L 
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 259 QLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT 297
            + +L+L+ N +S I PS+L  L     ++L  N L  T
Sbjct: 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  109 bits (274), Expect = 5e-25
 Identities = 48/237 (20%), Positives = 92/237 (38%), Gaps = 9/237 (3%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRL 141
            I   V       ++  ++L     +    +  H  S L+ LD+++  L   +PSG+  L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGL 300

Query: 142 VRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQ-FPSSICRIATLTDIAMSNN 200
             L+ L +  N F++       +  +LT LS+K N  + +     +  +  L ++ +S++
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 201 ELSGKLPDMSA---LTSLHVLDLRENKLDSGLPLMPKG---LVTVLLSRNLFSGAIPQ-Q 253
           ++            L+ L  L+L  N+  S      K    L  + L+         Q  
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDS 310
           F  L  L+ L+LS + L      +   LP + +L+L  N       +  +    L  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.7 bits (236), Expect = 2e-20
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 9/206 (4%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SR 140
           + D     L  L+ L+ L+L          +       LELLD++   L           
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 141 LVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG---QFPSSICRIATLTDIAM 197
           L  L+ L +  +  D +    +D L  L  L+L+ N       Q  +S+  +  L  + +
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 198 SNNELSGKLPDM-SALTSLHVLDLRENKLDSGLP---LMPKGLVTVLLSRNLFSGAIPQQ 253
           S  +LS       ++L  ++ +DL  N+L +      L     + + L+ N  S  +P  
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALSHLKGIYLNLASNHISIILPSL 542

Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLF 279
              L+Q + ++L  N L     ++ F
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSNIYF 568

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 1e-19
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 4/152 (2%)

Query: 165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLHVLDLREN 223
            ++   L    N L     ++  R+  LT + ++  ++     D   +   L  L L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 224 KLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS 280
            L          PK L  +   +   S            L+ L L  N +S I     F 
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 281 LPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
              +  L   +N +     +D+S   +  ++S
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 1e-19
 Identities = 36/214 (16%), Positives = 60/214 (28%), Gaps = 25/214 (11%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
             +   L      +         RL +L  LD++   ++           RL TL +  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SA 211
                          L  L      +       +    TL  + + +N +S         
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 212 LTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQH--LDLSFND 269
              L VLD + N +   L                      +    L Q  +  L+L+ ND
Sbjct: 152 TEKLKVLDFQNNAI-HYLS--------------------KEDMSSLQQATNLSLNLNGND 190

Query: 270 LSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
           ++GI P   F       L+         + K L 
Sbjct: 191 IAGIEPG-AFDSAVFQSLNFGGTQNLLVIFKGLK 223

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 6e-10
 Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 30/187 (16%)

Query: 89  TLTRLTTLRVLSLVS---LGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQ 145
               L  L+ L+L             + +  L  LE+L +S   L        + L  + 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 146 TLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK 205
            + +  N    +  +    L  +  L+L SN +    PS                     
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL-------------------- 542

Query: 206 LPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL-LSRNLFSGAIPQQFGELAQLQHLD 264
              +  L+    ++LR+N LD     +    +     +                 L+ + 
Sbjct: 543 ---LPILSQQRTINLRQNPLDCTCSNIY--FLEWYKENMQKLEDTEDTLCENPPLLRGVR 597

Query: 265 LSFNDLS 271
           LS   LS
Sbjct: 598 LSDVTLS 604

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  111 bits (279), Expect = 4e-27
 Identities = 64/315 (20%), Positives = 112/315 (35%), Gaps = 88/315 (27%)

Query: 441 NFDSLSF---MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDF------LS 491
           ++  +     +G G+ G + K +      VAI      K+  I++   R  F      LS
Sbjct: 6   DYKEIEVEEVVGRGAFGVVCKAKW-RAKDVAI------KQ--IESESERKAFIVELRQLS 56

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
           ++ HP++V L G C           N V LV EY   GS    L    P      +  ++
Sbjct: 57  RVNHPNIVKLYGAC----------LNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMS 106

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEH-RIAKLSDYGISIIMEEH------ 603
             +  ++ V +LHS        +R L   N+LL     + K+ D+G +  ++ H      
Sbjct: 107 WCLQCSQGVAYLHSMQPKA-LIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKG 165

Query: 604 -------EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
                  E  E      K                             DV+++G IL E  
Sbjct: 166 SAAWMAPEVFEGSNYSEKC----------------------------DVFSWGIILWE-- 195

Query: 657 VGPIVTGK---GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
              ++T +    E         +   +G R    P ++    +     + S+  +C   +
Sbjct: 196 ---VITRRKPFDEIGGPAFRIMWAVHNGTR----PPLIKNLPKP----IESLMTRCWSKD 244

Query: 714 PSSRPSFEDVLWNLQ 728
           PS RPS E+++  + 
Sbjct: 245 PSQRPSMEEIVKIMT 259

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  109 bits (275), Expect = 1e-26
 Identities = 59/303 (19%), Positives = 114/303 (37%), Gaps = 55/303 (18%)

Query: 441 NFDSLSF---MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNL--KVRLDF------ 489
               ++    +G GS G +YKG+  +G  VA+      K  ++     +    F      
Sbjct: 22  PDGQITVGQRIGSGSFGTVYKGKW-HGD-VAV------KMLNVTAPTPQQLQAFKNEVGV 73

Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           L K +H +++  +G+             ++ +V ++    S   HL     E   +    
Sbjct: 74  LRKTRHVNILLFMGYSTA---------PQLAIVTQWCEGSSLYHHLHA--SETKFEMKKL 122

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
           + I    A+ + +LH+  I     +R L +NNI L E    K+ D+G++         ++
Sbjct: 123 IDIARQTARGMDYLHAKSII----HRDLKSNNIFLHEDNTVKIGDFGLA-------TEKS 171

Query: 609 KGEGPKARYGFLF-ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG-- 665
           +  G          I   + E V+ + D      + DVY FG +L E     ++TG+   
Sbjct: 172 RWSGSHQFEQLSGSILWMAPE-VIRMQDSNPYSFQSDVYAFGIVLYE-----LMTGQLPY 225

Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW 725
                 +        G        V + C +     +  +  +C+  +   RPSF  +L 
Sbjct: 226 SNINNRDQIIEMVGRGSLSPDLSKVRSNCPKR----MKRLMAECLKKKRDERPSFPRILA 281

Query: 726 NLQ 728
            ++
Sbjct: 282 EIE 284

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (287), Expect = 1e-26
 Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 9/219 (4%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIW--GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLV 142
           S       L +L  L L    +   G         +SL  LD+S N     + +    L 
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399

Query: 143 RLQTLTMDTNFFDDNVP-DWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNE 201
            LQ L    +          + SL  L  L +     K  F      + +L  + M+ N 
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 202 LSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKG---LVTVLLSRNLFSGAIPQQFGE 256
                     +  T+L  LDL + +L+     +      L  + +S N         + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           L  L  LD SFN +      +     ++++ +L +N ++
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (257), Expect = 7e-23
 Identities = 35/224 (15%), Positives = 76/224 (33%), Gaps = 17/224 (7%)

Query: 88  TTLTRLTTLRV--LSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQ 145
           + +  L  + +    L     +     K H L+++  + ++   +       + +  + Q
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQ 310

Query: 146 TLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK 205
           +L++               L  L  L+L  N+    F        +L+ + +S N LS  
Sbjct: 311 SLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFS 365

Query: 206 LPD---MSALTSLHVLDLRENKL---DSGLPLMPKGLVTVLLSRNLFSGAIPQQ-FGELA 258
                      SL  LDL  N      +    + + L  +    +          F  L 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 259 QLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
           +L +LD+S+ +       +   L +++ L +A N        ++
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 3e-22
 Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 11/213 (5%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF 153
           ++ + + L    +           S L+ LD+S   +          L  L  L +  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 154 FDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG-KLPD-MSA 211
                P  +  L++L  L     +L       I ++ TL  + +++N +   KLP   S 
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 212 LTSLHVLDLRENKLDS-------GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLD 264
           LT+L  +DL  N + +        L   P+  +++ +S N       Q F  + +L  L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210

Query: 265 LSFNDLSG-IPPSVLFSLPNISYLHLASNMLSG 296
           L  N  S  I  + L +L  +    L       
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.6 bits (246), Expect = 1e-21
 Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 16/233 (6%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRL 144
            ++  + +    + LS++   +    P     L  L+ L ++ N    +I      L  L
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKG--SISFKKVALPSL 352

Query: 145 QTLTMDTNFFD--DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL 202
             L +  N               ++L  L L  N       ++   +  L  +   ++ L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411

Query: 203 SGKLPDMSA---LTSLHVLDLRENKLDSGLPLMPKGLV--TVL-LSRNLFSGAIPQQ-FG 255
              + + SA   L  L  LD+           +  GL     L ++ N F        F 
Sbjct: 412 KR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 256 ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
               L  LDLS   L  I   V  +L  +  L+++ N L        +    L
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.5 bits (238), Expect = 1e-20
 Identities = 40/239 (16%), Positives = 77/239 (32%), Gaps = 21/239 (8%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGA-IPSGISRLVRLQTL 147
           + + LT+L  L  V   +       I +L +L+ L+++ NF+    +P+  S L  L  +
Sbjct: 99  SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 148 TMDTNFFDDNVPDWWDSLSNLT----VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS 203
            +  N+      +    L         L +  N +         +   L ++ +  N  S
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNS 217

Query: 204 GKLPD--MSALTSLHVLDLRENKLDSGLPL------MPKGLV-----TVLLSRNLFSGAI 250
             +    +  L  LHV  L   +      L      + +GL         L+        
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD 309
             +F  LA +  + L+   +  +    +        L +    L      DL     L 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.2 bits (232), Expect = 6e-20
 Identities = 40/205 (19%), Positives = 67/205 (32%), Gaps = 9/205 (4%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIP-SGISR 140
                  +     +LR L L   G    +      L  L+ LD   + L      S    
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422

Query: 141 LVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT-LTDIAMSN 199
           L +L  L +       +    +  L++L  L +  N  K    S++    T LT + +S 
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 200 NELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMP----KGLVTVLLSRNLFSGAIPQQF 254
            +L      +   L  L +L++  N L   L          L T+  S N    +     
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 255 GELAQLQHLDLSFNDLSGIPPSVLF 279
                L   +L+ N ++ I     F
Sbjct: 542 HFPKSLAFFNLTNNSVACICEHQKF 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 9e-18
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 5/143 (3%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLHVLDLRENK 224
           S+   + L  N LK     S    + L  + +S  E+          L  L  L L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 225 LDSGLPLMPKGLV--TVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS- 280
           + S  P    GL     L       +       G+L  L+ L+++ N +        FS 
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 281 LPNISYLHLASNMLSGTLPKDLS 303
           L N+ ++ L+ N +      DL 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQ 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 22/92 (23%), Positives = 33/92 (35%)

Query: 217 VLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS 276
                + KL      +P     + LS N         F   ++LQ LDLS  ++  I   
Sbjct: 15  TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 277 VLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
               L ++S L L  N +    P   S  + L
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  108 bits (273), Expect = 1e-26
 Identities = 60/314 (19%), Positives = 116/314 (36%), Gaps = 81/314 (25%)

Query: 441 NFDSLSF---MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL--DF------ 489
           +F  L+F   + E   G+L+KGR   G  + +      K   +++   R   DF      
Sbjct: 8   DFKQLNFLTKLNENHSGELWKGRW-QGNDIVV------KVLKVRDWSTRKSRDFNEECPR 60

Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           L    HP+++ +LG C               L+  ++P GS    L E     V+  S  
Sbjct: 61  LRIFSHPNVLPVLGACQ------SPPAPHPTLITHWMPYGSLYNVLHEG-TNFVVDQSQA 113

Query: 550 LAILIGVAKAVHFLHSS---VISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +   + +A+ + FLH+    +         L + ++++DE   A++S   +    +   +
Sbjct: 114 VKFALDMARGMAFLHTLEPLIP-----RHALNSRSVMIDEDMTARISMADVKFSFQSPGR 168

Query: 606 L--------EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV 657
           +        EA  + P+              +              D+++F  +L E   
Sbjct: 169 MYAPAWVAPEALQKKPEDTN---------RRSA-------------DMWSFAVLLWE--- 203

Query: 658 GPIVTGKGEAF--LLNEMASFG-SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEP 714
             +VT +   F  L N       + +G R    P +    S      V  +   C+  +P
Sbjct: 204 --LVTRE-VPFADLSNMEIGMKVALEGLR----PTIPPGISPH----VSKLMKICMNEDP 252

Query: 715 SSRPSFEDVLWNLQ 728
           + RP F+ ++  L+
Sbjct: 253 AKRPKFDMIVPILE 266

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  108 bits (273), Expect = 2e-26
 Identities = 56/314 (17%), Positives = 112/314 (35%), Gaps = 66/314 (21%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLK-----VRLDFLSKLQHPHLVSLLG 503
           G+G  G++++G    G  VA+      K +S ++ K       L     L+H +++  + 
Sbjct: 17  GKGRYGEVWRGSW-QGENVAV------KIFSSRDEKSWFRETELYNTVMLRHENILGFIA 69

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL 563
             + S      ++ +++L+  Y   GS   +L        L     L I++ +A  +  L
Sbjct: 70  SDMTS----RHSSTQLWLITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHL 121

Query: 564 HSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA--- 615
           H  +             L + NIL+ ++    ++D G++++  +       G  P+    
Sbjct: 122 HIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTK 181

Query: 616 RY--------GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA 667
           RY             C  S + V             D++ FG +L E     +  G  E 
Sbjct: 182 RYMAPEVLDETIQVDCFDSYKRV-------------DIWAFGLVLWEVARRMVSNGIVED 228

Query: 668 FLL------------NEMASFGSQDGRRRIVDPVV-LTTCSQESLSIVVSITNKCICPEP 714
           +               +M      D +R    P +     S  +L+ +  +  +C    P
Sbjct: 229 YKPPFYDVVPNDPSFEDMRKVVCVDQQR----PNIPNRWFSDPTLTSLAKLMKECWYQNP 284

Query: 715 SSRPSFEDVLWNLQ 728
           S+R +   +   L 
Sbjct: 285 SARLTALRIKKTLT 298

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  108 bits (272), Expect = 4e-26
 Identities = 63/310 (20%), Positives = 118/310 (38%), Gaps = 72/310 (23%)

Query: 441 NFDSLSF---MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNL--KVRLDF------ 489
            +  L+    +G GS G +++    +G+ VA+      K    Q+   +   +F      
Sbjct: 35  PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAV------KILMEQDFHAERVNEFLREVAI 87

Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           + +L+HP++V  +G   +           + +V EY+  GS    L ++     L    R
Sbjct: 88  MKRLRHPNIVLFMGAVTQP--------PNLSIVTEYLSRGSLYRLLHKSGAREQLDERRR 139

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
           L++   VAK +++LH+   +    +R L + N+L+D+    K+ D+G+S +         
Sbjct: 140 LSMAYDVAKGMNYLHNR--NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFL--- 194

Query: 609 KGEGPKARYGF----LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK 664
             +       +    +     S E               DVY+FG IL E     + T +
Sbjct: 195 SSKSAAGTPEWMAPEVLRDEPSNEKS-------------DVYSFGVILWE-----LATLQ 236

Query: 665 ----GEAFLLNEMASFGS--QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
                    LN      +     +R      +    + +    V +I   C   EP  RP
Sbjct: 237 QPWGN----LNPAQVVAAVGFKCKR----LEIPRNLNPQ----VAAIIEGCWTNEPWKRP 284

Query: 719 SFEDVLWNLQ 728
           SF  ++  L+
Sbjct: 285 SFATIMDLLR 294

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  109 bits (273), Expect = 4e-26
 Identities = 53/306 (17%), Positives = 104/306 (33%), Gaps = 50/306 (16%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLK-----VRLDFLSKLQHPHLVSLLG 503
           G+G  G+++ G+   G  VA+      K +             +     ++H +++  + 
Sbjct: 46  GKGRYGEVWMGKW-RGEKVAV------KVFFTTEEASWFRETEIYQTVLMRHENILGFIA 98

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL 563
             I+       +  +++L+ +Y  NGS   +L        L     L +       +  L
Sbjct: 99  ADIKG----TGSWTQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHL 150

Query: 564 HSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA--- 615
           H+ + S           L + NIL+ ++    ++D G+++               +    
Sbjct: 151 HTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTK 210

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLED----DVYNFGFILLESLVGPIVTGKGEAFLLN 671
           RY          E  V+   + R   +     D+Y+FG IL E     +  G  E + L 
Sbjct: 211 RY-------MPPE--VLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLP 261

Query: 672 EMASFGSQDGRRRIVDPVVL---------TTCSQESLSIVVSITNKCICPEPSSRPSFED 722
                 S      + + V +            S E L  +  +  +C    P+SR +   
Sbjct: 262 YHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALR 321

Query: 723 VLWNLQ 728
           V   L 
Sbjct: 322 VKKTLA 327

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  108 bits (271), Expect = 5e-26
 Identities = 57/298 (19%), Positives = 110/298 (36%), Gaps = 56/298 (18%)

Query: 449 GEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFL------SKLQHPHLVSL 501
           G+G  G+  K    E G  + +      K+    + + +  FL        L+HP+++  
Sbjct: 19  GKGCFGQAIKVTHRETGEVMVM------KELIRFDEETQRTFLKEVKVMRCLEHPNVLKF 72

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           +G   +          ++  + EYI  G+ R  +     ++   WS R++    +A  + 
Sbjct: 73  IGVLYKDK--------RLNFITEYIKGGTLRGIIKSM--DSQYPWSQRVSFAKDIASGMA 122

Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA--RYG 618
           +LHS     +  +R L ++N L+ E++   ++D+G++ +M + +         K   R  
Sbjct: 123 YLHSM----NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKK 178

Query: 619 FLFICRTSA----ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF----LL 670
              +         E  +I       K+  DV++FG +L E     I+     A       
Sbjct: 179 RYTVVGNPYWMAPE--MINGRSYDEKV--DVFSFGIVLCE-----IIGR-VNADPDYLPR 228

Query: 671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
                   +    R         C          IT +C   +P  RPSF  +   L+
Sbjct: 229 TMDFGLNVRGFLDR--------YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLE 278

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 2e-25
 Identities = 31/198 (15%), Positives = 76/198 (38%), Gaps = 8/198 (4%)

Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
           + +     +  ++  ++ + L  A+ S       ++ L +  N             + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL 229
           +L+L SN L       +  ++TL  + ++NN +     ++    S+  L    N +    
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVS 115

Query: 230 PLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS-LPNISYLH 288
               +G   + L+ N  +       G  +++Q+LDL  N++  +  + L +    + +L+
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 289 LASNMLSGTLPKDLSCGS 306
           L  N +   +   +    
Sbjct: 176 LQYNFIY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 47/234 (20%), Positives = 93/234 (39%), Gaps = 20/234 (8%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
            L   T L +L+L S  ++  L   +  LS+L  LD+++N++       +     ++TL 
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLH 105

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
              N     V            + L +N++           + +  + +  NE+   +  
Sbjct: 106 AANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNF 161

Query: 209 ---MSALTSLHVLDLRENKLDS--GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
               ++  +L  L+L+ N +    G  +  K L T+ LS N  +  +  +F   A +  +
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLS-GTLPKDLSCGSKLDSISDKRV 316
            L  N L  I  + L    N+ +  L  N    GTL    S   ++ +++ + V
Sbjct: 220 SLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 249 AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           AI +      + +   ++ + L     S+  S  N+  L L+ N LS
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS 47

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  107 bits (268), Expect = 2e-25
 Identities = 51/307 (16%), Positives = 108/307 (35%), Gaps = 58/307 (18%)

Query: 441 NFDSLSF---MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNL--KVRLDF------ 489
            F+ L     +G+G  G++Y GR  +G  VAI      +   I+         F      
Sbjct: 31  PFEQLEIGELIGKGRFGQVYHGRW-HGE-VAI------RLIDIERDNEDQLKAFKREVMA 82

Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
             + +H ++V  +G C+            + ++       +  + + +   + VL  +  
Sbjct: 83  YRQTRHENVVLFMGACMSPP--------HLAIITSLCKGRTLYSVVRD--AKIVLDVNKT 132

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
             I   + K + +LH+  I     ++ L + N+  D  ++  ++D+G+  I     +   
Sbjct: 133 RQIAQEIVKGMGYLHAKGI----LHKDLKSKNVFYDNGKV-VITDFGLFSI-SGVLQAGR 186

Query: 609 KGEGPKARYGFL-----FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTG 663
           + +  + + G+L      I R  + +              DV+  G I  E     +   
Sbjct: 187 REDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHS--DVFALGTIWYE-----LHAR 239

Query: 664 KGEAF--LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
           +   F     E   +    G +  +         +E    +  I   C   E   RP+F 
Sbjct: 240 E-WPFKTQPAEAIIWQMGTGMKPNLSQ---IGMGKE----ISDILLFCWAFEQEERPTFT 291

Query: 722 DVLWNLQ 728
            ++  L+
Sbjct: 292 KLMDMLE 298

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  103 bits (260), Expect = 8e-25
 Identities = 61/317 (19%), Positives = 121/317 (38%), Gaps = 81/317 (25%)

Query: 441 NFDSLSF---MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDF------LS 491
           +F  L+    +G G  GK+Y+     G  VA++             +   +        +
Sbjct: 5   DFAELTLEEIIGIGGFGKVYRAFW-IGDEVAVK--AARHDPDEDISQTIENVRQEAKLFA 61

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
            L+HP++++L G C++           + LV E+   G     LS       +     + 
Sbjct: 62  MLKHPNIIALRGVCLKE--------PNLCLVMEFARGGPLNRVLS----GKRIPPDILVN 109

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDE--------HRIAKLSDYGISIIMEE 602
             + +A+ +++LH   I     +R L ++NIL+ +        ++I K++D+G++     
Sbjct: 110 WAVQIARGMNYLHDEAIV-PIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHR 168

Query: 603 HEKLEAKG-------EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES 655
             K+ A G       E        +      ++               DV+++G +L E 
Sbjct: 169 TTKMSAAGAYAWMAPE--------VIRASMFSKGS-------------DVWSYGVLLWE- 206

Query: 656 LVGPIVTGK----GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
               ++TG+    G   L   +A   + +         + +TC +        +   C  
Sbjct: 207 ----LLTGEVPFRGIDGL--AVAYGVAMNKLA----LPIPSTCPEP----FAKLMEDCWN 252

Query: 712 PEPSSRPSFEDVLWNLQ 728
           P+P SRPSF ++L  L 
Sbjct: 253 PDPHSRPSFTNILDQLT 269

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  104 bits (261), Expect = 2e-24
 Identities = 49/306 (16%), Positives = 107/306 (34%), Gaps = 50/306 (16%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLK-----VRLDFLSKLQHPHLVSLLG 503
           G+G  G++++G+   G  VA+      K +S +  +       +     L+H +++  + 
Sbjct: 51  GKGRFGEVWRGKW-RGEEVAV------KIFSSREERSWFREAEIYQTVMLRHENILGFIA 103

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL 563
                  +D+    +++LV +Y  +GS   +L+       +     + + +  A  +  L
Sbjct: 104 ADN----KDNGTWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHL 155

Query: 564 HSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA--- 615
           H  ++            L + NIL+ ++    ++D G+++  +            +    
Sbjct: 156 HMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTK 215

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLED----DVYNFGFILLESLVGPIVTGKGEAFLLN 671
           RY        + E  V+   I     E     D+Y  G +  E      + G  E + L 
Sbjct: 216 RY-------MAPE--VLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 266

Query: 672 EMASFGSQDGRRRIVDPVVL---------TTCSQESLSIVVSITNKCICPEPSSRPSFED 722
                 S      +   V              S E+L ++  I  +C     ++R +   
Sbjct: 267 YYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALR 326

Query: 723 VLWNLQ 728
           +   L 
Sbjct: 327 IKKTLS 332

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  105 bits (264), Expect = 4e-24
 Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 8/227 (3%)

Query: 72  IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLF 131
           I N  L        F  + T L  L +  +VS     P        S++ + + + +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT- 312

Query: 132 GAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLK--GQFPSSICR 188
             +     S++     L    N   D V +    L+ L  L L+ NQLK   +      +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 189 IATLTDIAMSNNELSGKLPDM--SALTSLHVLDLRENKLDSGLPLMPKGLVTVL-LSRNL 245
           + +L  + +S N +S        S   SL  L++  N L   +       + VL L  N 
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK 432

Query: 246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              +IP+Q  +L  LQ L+++ N L  +P  +   L ++  + L +N
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 49/304 (16%), Positives = 102/304 (33%), Gaps = 31/304 (10%)

Query: 9   LLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYN 68
            L + K L               L +  + +   +   +     +  +  K V      N
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 69  GHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKI---HRLSSLELLDM 125
              +        F   S +  L     L  L+L ++        +I      +++    +
Sbjct: 197 IKCVLEDNKCSYFL--SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 126 SSNFLFGAIPSGISR-----LVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
           S+  L G +           L  L    + ++ F       ++  SN+ + +   +  + 
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMPKGLVTV 239
                  +I+    +  SNN L+  + +    LT L  L L+ N+L   L  + +     
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAE----- 368

Query: 240 LLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS-LPNISYLHLASNMLSGTL 298
                           ++  LQ LD+S N +S        S   ++  L+++SN+L+ T+
Sbjct: 369 -------------MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 299 PKDL 302
            + L
Sbjct: 416 FRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 1e-12
 Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 26/183 (14%)

Query: 122 LLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQ 181
           L+D S N L   +P  +S+  +   L +  N+  +       SLS L +L +  N+++  
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 182 FPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLL 241
             S       L  + +S+N+L  K+       +L  LDL  N  D+ LP           
Sbjct: 61  DISVFKFNQELEYLDLSHNKLV-KISC-HPTVNLKHLDLSFNAFDA-LP----------- 106

Query: 242 SRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS-YLHLASNMLSGTLPK 300
                   I ++FG ++QL+ L LS   L       +  L      L L         P+
Sbjct: 107 --------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 301 DLS 303
            L 
Sbjct: 159 GLQ 161

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 8/190 (4%)

Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ 177
               +L++S N++     S I  L +L+ L +  N         +     L  L L  N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 178 LKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA---LTSLHVLDLRENKLDSGLPLMPK 234
           L      S      L  + +S N     LP       ++ L  L L    L+    L   
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 235 GLVTVLLSRNLFSGAI-PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM 293
            L    +   L       +    L       L     +      +  +   +  +L  + 
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 294 LSGTLPKDLS 303
           +   L  +  
Sbjct: 197 IKCVLEDNKC 206

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLT 148
           LT L TL +L +  L     + +   ++ SL+ LD+S N +      G  S    L +L 
Sbjct: 347 LTELETL-ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
           M +N   D +         + VL L SN++K   P  + ++  L ++ +++N+L   +PD
Sbjct: 406 MSSNILTDTIFR--CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461

Query: 209 MS--ALTSLHVLDLRENKLD 226
                LTSL  + L  N  D
Sbjct: 462 GIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 41/272 (15%), Positives = 91/272 (33%), Gaps = 42/272 (15%)

Query: 74  NQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGA 133
            +T  E    +          +L ++   +      L   +  +++LEL ++        
Sbjct: 148 GETYGEKEDPEGL--QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 134 IPSGISRLVRLQTLTMDTNFFDDNVPDWWDSL---------SNLTVLSLKSNQLKGQ--- 181
               +S L +LQT    +N   +N+   W+S          + +   S+ + +L+GQ   
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265

Query: 182 --FPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMPKGLVT 238
             F  S   +  L+   + ++        +    +++++ +   +               
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM----------- 314

Query: 239 VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTL 298
                 +          +++   HLD S N L+         L  +  L L  N L   L
Sbjct: 315 ------VHMLC----PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-EL 363

Query: 299 PKDLSCGSKLDSISDKRVVKFGGNCLSYDTPS 330
            K     +++ S+   + +    N +SYD   
Sbjct: 364 SKIAEMTTQMKSL---QQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 28/194 (14%), Positives = 56/194 (28%), Gaps = 17/194 (8%)

Query: 111 PDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
              I  LS L +L +S N +   +   +      L+ L +  N     +        NL 
Sbjct: 38  TSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLK 93

Query: 170 VLSLKSNQLKG-QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
            L L  N             ++ L  + +S   L      +  +  L++  +     ++ 
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLVLGETY 151

Query: 229 LP---------LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
                         + L  V  +   F   +      +A L+  ++            L 
Sbjct: 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 280 SLPNISYLHLASNM 293
            L  +      SN+
Sbjct: 212 ILAKLQTNPKLSNL 225

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 34/248 (13%), Positives = 70/248 (28%), Gaps = 34/248 (13%)

Query: 90  LTRLTTLRVLS--LVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
              L  L +      +L    P+  +   +S L+ L +S+  L  +    I+ L   + L
Sbjct: 89  TVNLKHLDLSFNAFDAL----PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP 207
            +    +     +  + L +    SL       +    I  ++  T   +  + +   L 
Sbjct: 145 LVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 208 D------MSALTSLHVLDLRENKLDSGLPLMPKGLVTVL-----------------LSRN 244
           D      +S L  L       N   + +       + +L                 L   
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN---MLSGTLPKD 301
           L           L  L    +  +        +     N++  +   +   M+    P  
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 302 LSCGSKLD 309
           +S    LD
Sbjct: 323 ISPFLHLD 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (264), Expect = 4e-24
 Identities = 31/198 (15%), Positives = 76/198 (38%), Gaps = 8/198 (4%)

Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
           + +     +  ++  ++ + L  A+ S       ++ L +  N             + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL 229
           +L+L SN L       +  ++TL  + ++NN +     ++    S+  L    N +    
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVS 115

Query: 230 PLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS-LPNISYLH 288
               +G   + L+ N  +       G  +++Q+LDL  N++  +  + L +    + +L+
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 289 LASNMLSGTLPKDLSCGS 306
           L  N +   +   +    
Sbjct: 176 LQYNFIY-DVKGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 7e-17
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 13/239 (5%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRL 144
           +F        TL  L+L    I+  +  ++   + L+ LD+SSN L   +         +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGV 216

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLK-GQFPSSICRIATLTDIAMSNNELS 203
             +++  N     +        NL    L+ N    G       +   +  +A    +  
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 204 GKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLF-------SGAIPQQFGE 256
               +    T   +        +         L+ +    +         +  +  +   
Sbjct: 276 TGQNEEE-CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKR 315
            A+ + +D        +   V         L      L   +       ++LD    + 
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.4 bits (201), Expect = 3e-16
 Identities = 33/216 (15%), Positives = 58/216 (26%), Gaps = 52/216 (24%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
             L    ++  L   +  I   +          + + +++N +            R+Q L
Sbjct: 93  QELLVGPSIETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 148 TMDTNFFDD-NVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
            +  N  D  N  +   S   L  L+L+ N +                           +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-------------------------DV 184

Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLS 266
                   L  LDL  NKL                        +  +F   A +  + L 
Sbjct: 185 KGQVVFAKLKTLDLSSNKLAF----------------------MGPEFQSAAGVTWISLR 222

Query: 267 FNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
            N L  I  + L    N+ +  L  N       +D 
Sbjct: 223 NNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 24/211 (11%), Positives = 58/211 (27%), Gaps = 17/211 (8%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
              L+ L L S  +   +  +    + +  + + +N L   I   +     L+   +  N
Sbjct: 190 FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGN 247

Query: 153 FFD-DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA 211
            F    + D++     +  ++ ++ +         C + TL            +      
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH----YGAYCCEDLPAPF 303

Query: 212 LTSLHVLDLRENKLDSGLPLMPKG----------LVTVLLSRNLFSGAIPQQFGELAQLQ 261
              L  L  +E+ L SG     +              +   +  +   I Q         
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 262 HLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            L+     L     +   +   +      + 
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 249 AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
           AI +      + +   ++ + L     S+  S  N+  L L+ N LS     DL+
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA 55

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  102 bits (255), Expect = 5e-24
 Identities = 62/312 (19%), Positives = 124/312 (39%), Gaps = 67/312 (21%)

Query: 441 NFDSLSF---MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRL-DF------ 489
             + + +   +G+G  G ++KGR +++ + VAI+SL          +  +  +F      
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76

Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
           +S L HP++V L G             N   +V E++P G     L      + +KWS +
Sbjct: 77  MSNLNHPNIVKLYGLM----------HNPPRMVMEFVPCGDLYHRL--LDKAHPIKWSVK 124

Query: 550 LAILIGVAKAVHFLHSS---VISGSFSNR-LTTNNILLDE-----HRIAKLSDYGISIIM 600
           L +++ +A  + ++ +    ++     +R L + NI L          AK++D+G+S   
Sbjct: 125 LRLMLDIALGIEYMQNQNPPIV-----HRDLRSPNIFLQSLDENAPVCAKVADFGLSQQS 179

Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
                      G   ++        + E   I  + +    + D Y+F  IL       I
Sbjct: 180 VHSVSGLL---GN-FQW-------MAPE--TIGAEEESYTEKADTYSFAMILYT-----I 221

Query: 661 VTGKG--EAFLLNEMASFGS--QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
           +TG+G  + +   ++       ++G R    P +   C       + ++   C   +P  
Sbjct: 222 LTGEGPFDEYSYGKIKFINMIREEGLR----PTIPEDCPPR----LRNVIELCWSGDPKK 273

Query: 717 RPSFEDVLWNLQ 728
           RP F  ++  L 
Sbjct: 274 RPHFSYIVKELS 285

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (254), Expect = 9e-24
 Identities = 51/220 (23%), Positives = 83/220 (37%), Gaps = 18/220 (8%)

Query: 89  TLTRLTTLRVLSLVS--LGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
              +LT L  LSL S  L   G         +SL+ LD+S N +   + S    L +L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEH 105

Query: 147 LTMDTNFFDDNVP-DWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK 205
           L    +          + SL NL  L +     +  F      +++L  + M+ N     
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 206 LPDM--SALTSLHVLDLRENKLDS-------GLPLMPKGLVTVLLSRNLFSGAIPQQFGE 256
                 + L +L  LDL + +L+         L      L  + +S N F       +  
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----SLQVLNMSHNNFFSLDTFPYKC 221

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLP-NISYLHLASNMLS 295
           L  LQ LD S N +       L   P ++++L+L  N  +
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 25/186 (13%)

Query: 119 SLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL 178
           S   +  +S  L  ++P+GI        L +++N         +D L+ LT LSL SN L
Sbjct: 8   SGTEIRCNSKGL-TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 179 KGQFPSSIC--RIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGL 236
             +   S       +L  + +S N +     +   L  L  LD + + L           
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--------- 115

Query: 237 VTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSG 296
              +   ++F          L  L +LD+S          +   L ++  L +A N    
Sbjct: 116 ---MSEFSVFLS--------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 297 TLPKDL 302
               D+
Sbjct: 165 NFLPDI 170

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (259), Expect = 3e-23
 Identities = 50/292 (17%), Positives = 105/292 (35%), Gaps = 25/292 (8%)

Query: 16  LEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQ 75
            E  SP+         L + +    + +      ++ ++        ++   NG    N 
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF-------DDCTLNGLGDFNP 271

Query: 76  TLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIP 135
           + S+  S    V T+T    +R L +    ++  L      L  ++ + + ++ +F  +P
Sbjct: 272 SESDVVSELGKVETVT----IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP 326

Query: 136 SGI-SRLVRLQTLTMDTNFFDDNVPDWW---DSLSNLTVLSLKSNQLK--GQFPSSICRI 189
                 L  L+ L +  N   +          +  +L  L L  N L+   +    +  +
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 190 ATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGA 249
             LT + +S N              +  L+L    +      +P+ L  + +S N    +
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-S 445

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKD 301
                  L +LQ L +S N L  +P + L   P +  + ++ N L  ++P  
Sbjct: 446 FSL---FLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLK-SVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (252), Expect = 2e-22
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 11/209 (5%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL---FGAIPSGISRLVRLQ 145
             + L  ++ +++ +  ++         L SLE LD+S N +   +    +       LQ
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 146 TLTMDTNFFDD--NVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS 203
           TL +  N         +   +L NLT L +  N      P S      +  + +S+  + 
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

Query: 204 GKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
             +       +L VLD+  N LDS   L    L  + +SRN               L  +
Sbjct: 424 -VVKT-CIPQTLEVLDVSNNNLDS-FSLFLPRLQELYISRNKLKTLPDASL--FPVLLVM 478

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            +S N L  +P  +   L ++  + L +N
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 45/263 (17%), Positives = 97/263 (36%), Gaps = 30/263 (11%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDK-IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
           +    LT L+ L + ++  +  +       L+SL  L++ +  L       +  +  +  
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSI-------------CRIATLT 193
           LT+  +     +  + D LS++  L L+   L     S +              R + LT
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 194 DIAMSNNELSGKLPDMSALTSLHVLDLRENKLD----------SGLPLMPKGLVTVL-LS 242
           D +   NEL   L  +  L+ +   D   N L           S L  +    +  L + 
Sbjct: 237 DESF--NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 243 RNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
           +      +   +  L +++ + +  + +  +P S    L ++ +L L+ N++     K+ 
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 303 SCGSKLDSISDKRVVKFGGNCLS 325
           +C     S+   + +    N L 
Sbjct: 355 ACKGAWPSL---QTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 9e-19
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 10/211 (4%)

Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
           +P  +   ++++ LD+S N +       +     LQ L + ++  +    D + SL +L 
Sbjct: 20  IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77

Query: 170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA---LTSLHVLDLRENKLD 226
            L L  N L     S    +++L  + +  N     L   S    LT+L  L +   +  
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 227 SGLPLMP----KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP 282
           S +  +       L  + +          Q    +  + HL L  ++ + +       L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 283 NISYLHLASNMLSGTLPKDLSCGSKLDSISD 313
           ++ YL L    L+      L        +  
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 6e-17
 Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 36/237 (15%)

Query: 80  SFSIDSFVTTLTRLT-TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI 138
              +D   + + +L     VL+  S      L   I  LS +E  D + N L    PS  
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274

Query: 139 S--------RLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA 190
                      V ++ L +   +   ++   +  L  +  ++++++++    P S  +  
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL 333

Query: 191 T-LTDIAMSNNELSGKLPDMSA----LTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNL 245
             L  + +S N +  +    SA      SL  L L +N L S    M K           
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS----MQK----------- 378

Query: 246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
                 +    L  L  LD+S N    +P S       + +L+L+S  +   +   +
Sbjct: 379 ----TGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR-VVKTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.3 bits (201), Expect = 4e-16
 Identities = 27/231 (11%), Positives = 74/231 (32%), Gaps = 24/231 (10%)

Query: 89  TLTRLTTLRVLSLVSLGIWG-PLPDKIHRLSSLELLDMSSNFLFGAIPSG-ISRLVRLQT 146
               L++L+ L+L+        +      L++L+ L + +   F  I     + L  L  
Sbjct: 93  WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS--- 203
           L +      +       S+ ++  L+L  ++           ++++  + + +  L+   
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 204 -GKLPDMSALTSLHVLDLRENKLDSG----LPLMPKGLV--------------TVLLSRN 244
              LP     + +  L  R + L       L  + + ++                  + +
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
                      E   ++ L +    L     +V   L  +  + + ++ + 
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 4e-15
 Identities = 44/206 (21%), Positives = 71/206 (34%), Gaps = 31/206 (15%)

Query: 74  NQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGA 133
           N  + E     +       L TL  LS   L       + +  L +L  LD+S N     
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLV-LSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HP 401

Query: 134 IPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLT 193
           +P       +++ L + +      V         L VL + +N L   F   + R   L 
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIR-VVK--TCIPQTLEVLDVSNNNLD-SFSLFLPR---LQ 454

Query: 194 DIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQ 253
           ++ +S N+L   LPD S    L V+ +  N+L S             +   +F       
Sbjct: 455 ELYISRNKLK-TLPDASLFPVLLVMKISRNQLKS-------------VPDGIFDR----- 495

Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLF 279
              L  LQ + L  N      P + +
Sbjct: 496 ---LTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 7e-12
 Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 18/148 (12%)

Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP--DMSALTSLHVLDLR 221
           S     V   +S       PS +   A +  + +S N+++  +   D+ A  +L VL L+
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 222 ENKLDS-------GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIP 274
            +++++        L      L  + LS N  S      FG L+ L++L+L  N    + 
Sbjct: 59  SSRINTIEGDAFYSLGS----LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 275 PSVLFS-LPNISYLHLASNMLSGTLPKD 301
            + LF  L N+  L + +      + + 
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRI 142

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 6e-10
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 211 ALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDL 270
           +  +  V D R     S    +   + ++ LS N  +          A LQ L L  + +
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 271 SGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
           + I     +SL ++ +L L+ N LS +L    
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSW 93

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (250), Expect = 2e-22
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 22/200 (11%)

Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
           LP+    L SL + + +   L    P        L+ L +  N  +  +P+  +  S L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK-LPELQN-SSFLK 156

Query: 170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL 229
           ++ + +N LK + P        L  IA  NN+L  +LP++  L  L  +    N L   L
Sbjct: 157 IIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKK-L 210

Query: 230 PLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHL 289
           P +P  L +++   N+       +   L  L  +    N L  +P       P++  L++
Sbjct: 211 PDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNV 264

Query: 290 ASNMLSGTLPKDLSCGSKLD 309
             N L+  LP+     + LD
Sbjct: 265 RDNYLT-DLPELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.7 bits (223), Expect = 4e-19
 Identities = 33/214 (15%), Positives = 66/214 (30%), Gaps = 39/214 (18%)

Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFF--------DDN---- 157
           +P +   + S      + +      P G      +    +             ++     
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85

Query: 158 VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG------------- 204
           +P+      +L  L    N L  + P     + +L     +   LS              
Sbjct: 86  LPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141

Query: 205 ---KLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQ 261
              KLP++   + L ++D+  N L   LP +P  L  +    N     +P +   L  L 
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLT 198

Query: 262 HLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            +    N L  +P        ++  +   +N+L 
Sbjct: 199 AIYADNNSLKKLPD----LPLSLESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 37/233 (15%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
             +L  ++  +  +   LP+ +  L  L  +   +N L   +P     L   +++    N
Sbjct: 172 PPSLEFIAAGNNQL-EELPE-LQNLPFLTAIYADNNSL-KKLPDLPLSL---ESIVAGNN 225

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSAL 212
             ++ +P+   +L  LT +   +N LK   P       +L  + + +N L+       +L
Sbjct: 226 ILEE-LPELQ-NLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLTDLPELPQSL 279

Query: 213 TSLHVLDLRENKLDS----------------GLPLMPKGLVTVLLSRNLFSGAIPQQFGE 256
           T L V +   + L                   L  +P  L  + +S N     +P     
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---L 335

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD 309
             +L+ L  SFN L+ +P        N+  LH+  N L    P        L 
Sbjct: 336 PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 41/221 (18%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
             +L  L++    +   LP+    L+ L++ +   + L    P+       L  L   +N
Sbjct: 256 PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSN 307

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSAL 212
                +    D   +L  L++ +N+L  + P+   R   L  +  S N L+ ++P     
Sbjct: 308 ----EIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP--ELP 356

Query: 213 TSLHVLDLRENKLDS------------------GLPLMPKGLVTVLLSRNLFSGAIPQQF 254
            +L  L +  N L                     +P +P+ L  + +  N      P   
Sbjct: 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD-- 413

Query: 255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
                ++ L ++   +         +   +       +   
Sbjct: 414 -IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 33/169 (19%)

Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA------------ 211
           S + L      S+ L  + P     + + T+   + +E     P  +             
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 212 --LTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFND 269
                 H L+L    L S LP +P  L +++ S N  +  +P+    L  L   + +   
Sbjct: 68  CLDRQAHELELNNLGLSS-LPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 270 LSGIPPS---------------VLFSLPNISYLHLASNMLSGTLPKDLS 303
           LS +PP                 L +   +  + + +N L   LP    
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP 173

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 3e-22
 Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 29/222 (13%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRL 141
           +  S V  L  L  L  LS   L   G         +SL+ LD+S N +   + S    L
Sbjct: 339 NAFSEVD-LPSLEFLD-LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 142 VRLQTLTMDTNFFDDNVPDW--WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSN 199
            +L+ L    +     + ++  + SL NL  L +     +  F      +++L  + M+ 
Sbjct: 396 EQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 200 NELSGKLPDM--SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGEL 257
           N           + L +L  LDL + +L+              LS   F+         L
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQ-------------LSPTAFNS--------L 493

Query: 258 AQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
           + LQ L+++ N L  +P  +   L ++  + L +N    + P
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 28/218 (12%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF 153
            + + L L    +             L++LD+S   +          L  L TL +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 154 FDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPD-MSA 211
                   +  LS+L  L      L       I  + TL ++ +++N + S KLP+  S 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 212 LTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQ----HLDLSF 267
           LT+L  LDL  NK+ S +                           L Q+      LDLS 
Sbjct: 148 LTNLEHLDLSSNKIQS-IY--------------------CTDLRVLHQMPLLNLSLDLSL 186

Query: 268 NDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCG 305
           N ++ I P   F    +  L L +N  S  + K    G
Sbjct: 187 NPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQG 223

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.8 bits (218), Expect = 3e-18
 Identities = 44/226 (19%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 80  SFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPD-KIHRLSSLELLDMSSNFLFGAIPSGI 138
            + +D  +     LT +   SLVS+ I              LEL++              
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PT 321

Query: 139 SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL--KGQFPSSICRIATLTDIA 196
            +L  L+ LT  +N   +   +    L +L  L L  N L  KG    S     +L  + 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 197 MSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGE 256
           +S N +     +   L  L  LD + + L              +   ++F          
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNL------------KQMSEFSVFLS-------- 419

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
           L  L +LD+S          +   L ++  L +A N        D+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 45/223 (20%), Positives = 74/223 (33%), Gaps = 15/223 (6%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
            +      L+VL L    I          LS L  L ++ N +        S L  LQ L
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLK-GQFPSSICRIATLTDIAMSNNELSGKL 206
                            L  L  L++  N ++  + P     +  L  + +S+N++    
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 207 P-DMSALTSLHV----LDLRENKLDSGLPLMPKG--LVTVLLSRNLFSGAIPQQ-FGELA 258
             D+  L  + +    LDL  N ++   P   K   L  + L  N  S  + +     LA
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 259 QLQHLDL------SFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            L+   L      +  +L     S L  L N++        L 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMS--ALTSLHVLDLREN 223
            +   L L  N L+     S      L  + +S  E+   + D +  +L+ L  L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 224 KLDS---GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS 280
            + S   G       L  ++      +       G L  L+ L+++ N +        FS
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 281 -LPNISYLHLASNMLSGTLPKDLSCGSKL 308
            L N+ +L L+SN +      DL    ++
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 4e-15
 Identities = 36/230 (15%), Positives = 67/230 (29%), Gaps = 36/230 (15%)

Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSG-ISRLVRLQTLTMDTNFFDDNV------PDWW 162
           +     +   L  L + +NF    +    I  L  L+   +    F +            
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 163 DSLSNLTVLSLKSNQLKG---QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLD 219
           + L NLT+   +   L             +  ++  ++ +  +  ++ D S       L+
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLE 310

Query: 220 LRENKLDSGLPLMPKGLVTVLLSRNL------------------------FSGAIPQQFG 255
           L   K      L  K L  +  + N                         F G   Q   
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 256 ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCG 305
               L++LDLSFN +  +  S    L  + +L    + L       +   
Sbjct: 371 GTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 217 VLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS 276
                E         +P     + LS N         F    +LQ LDLS  ++  I   
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 277 VLFSLPNISYLHLASNMLSGTLPKDL 302
              SL ++S L L  N +  +L    
Sbjct: 71  AYQSLSHLSTLILTGNPIQ-SLALGA 95

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.0 bits (245), Expect = 3e-22
 Identities = 45/211 (21%), Positives = 90/211 (42%), Gaps = 13/211 (6%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
           V T   L ++  L +    +   +   I  L++LE L+++ N +    P  +S LV+L  
Sbjct: 37  VVTQEELESITKLVVAGEKVAS-IQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
           L + TN   D       +L+NL  L L  + +     S +  +  +  + +  N     L
Sbjct: 93  LYIGTNKITD--ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDL 148

Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDL 265
             +S +T L+ L + E+K+    P+     L ++ L+ N      P     L  L +   
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206

Query: 266 SFNDLSGIPPSVLFSLPNISYLHLASNMLSG 296
             N ++ I P  + ++  ++ L + +N ++ 
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.2 bits (243), Expect = 5e-22
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 12/212 (5%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRL 144
           S ++ L+ +T L  L++    +    P  I  L+ L  L ++ N +    P  ++ L  L
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG 204
              T   N   D  P    +++ L  L + +N++     S +  ++ LT + +  N++S 
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQIS- 256

Query: 205 KLPDMSALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
            +  +  LT L +L++  N++     L     L ++ L+ N       +  G L  L  L
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            LS N ++ I P  L SL  +     A+ ++ 
Sbjct: 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.6 bits (231), Expect = 2e-20
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 31/232 (13%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
           ++ L  LT LR L L    I    P  +  L+ +  L++ +N       S +S +  L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNY 159

Query: 147 LTMDTN-----------------FFDDN---VPDWWDSLSNLTVLSLKSNQLKGQFPSSI 186
           LT+  +                   + N         SL++L   +   NQ+     + +
Sbjct: 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPV 217

Query: 187 CRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLD--SGLPLMPKGLVTVLLSRN 244
             +  L  + + NN+++  L  ++ L+ L  L++  N++   + +  + K L  + +  N
Sbjct: 218 ANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISDINAVKDLTK-LKMLNVGSN 275

Query: 245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSG 296
             S         L+QL  L L+ N L      V+  L N++ L L+ N ++ 
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 6e-16
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 11/161 (6%)

Query: 144 LQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS 203
             TL       +   PD    L+      L+   +      +   + ++T + ++  +++
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 204 GKLPDMSALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGELAQLQH 262
             +  +  LT+L  L+L  N++    PL     L  + +  N  +         L  L+ 
Sbjct: 58  -SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRE 114

Query: 263 LDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
           L L+ +++S I P  L +L  +  L+L +N    +    LS
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLS 152

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.4 bits (248), Expect = 4e-22
 Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 32/240 (13%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTL 147
               L  L+ L +    +          L+SLE L +    L  +IP+   S L  L  L
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVL 181

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP 207
            +     +      +  L  L VL +           +      LT +++++  L+  +P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP 240

Query: 208 DM--SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDL 265
            +    L  L  L+L  N + +             +  ++           L +LQ + L
Sbjct: 241 YLAVRHLVYLRFLNLSYNPIST-------------IEGSMLHE--------LLRLQEIQL 279

Query: 266 SFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS 325
               L+ + P     L  +  L+++ N L+ TL + +       S+ +   +    N L+
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESV-----FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 11/220 (5%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKI-HRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQT 146
               L  LR L L S  +   +P  +   LS+L  LD+S N +   +   +   L  L++
Sbjct: 75  AFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKS 132

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
           L +  N         +  L++L  L+L+   L      ++  +  L  + + +  ++  +
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AI 191

Query: 207 PD--MSALTSLHVLDLRENKLDSGLP---LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQ 261
            D     L  L VL++        +    L    L ++ ++    +         L  L+
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 262 HLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKD 301
            L+LS+N +S I  S+L  L  +  + L    L+  +   
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPY 290

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 26/165 (15%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
           A+P GI      + L +  N       D + S  +L  L L  N +    P +   +  L
Sbjct: 25  AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 193 TDIAMSNNELSGKLPDM--SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI 250
             + + +N L   +P    + L++L  LD+ ENK+               L   +F    
Sbjct: 83  RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI-------------LLDYMFQD-- 126

Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
                 L  L+ L++  NDL  I       L ++  L L    L+
Sbjct: 127 ------LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 217 VLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPP 275
            +     +  + +P  +P     + L +N        +F     L+ L+L+ N +S + P
Sbjct: 15  AVLCHRKRFVA-VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 276 SVLFSLPNISYLHLASNMLSGTLPKDL 302
               +L N+  L L SN L   +P  +
Sbjct: 74  GAFNNLFNLRTLGLRSNRLK-LIPLGV 99

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 6e-22
 Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 31/236 (13%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTL 147
           +   L  L +L L    I        + L++L  L++  N L   IP+G    L +L+ L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKEL 141

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKS-NQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
            +  N  +      ++ + +L  L L    +L      +   ++ L  + ++   L  ++
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200

Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLS 266
           P+++ L  L  LDL  N L +             +    F G        L  LQ L + 
Sbjct: 201 PNLTPLIKLDELDLSGNHLSA-------------IRPGSFQG--------LMHLQKLWMI 239

Query: 267 FNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGN 322
            + +  I  +   +L ++  ++LA N L+  LP DL        +     +    N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL-----FTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 27/166 (16%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
            +P GIS     + L +  N       + +  L +L +L L  N ++     +   +A L
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 193 TDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI 250
             + + +N L+  +P+     L+ L  L LR N ++S             +    F+   
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES-------------IPSYAFNR-- 158

Query: 251 PQQFGELAQLQHLDLS-FNDLSGIPPSVLFSLPNISYLHLASNMLS 295
                 +  L+ LDL     LS I       L N+ YL+LA   L 
Sbjct: 159 ------IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 213 TSLHVLDLRENKLDS-------GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDL 265
           T+  +L+L EN++          L      L  + LSRN         F  LA L  L+L
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLR----HLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 266 SFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
             N L+ IP      L  +  L L +N +  ++P   
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 214 SLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
               +      L   +P  +      + L  N         F  L  L+ L LS N +  
Sbjct: 44  QFSKVICVRKNLRE-VPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102

Query: 273 IPPSVLFSLPNISYLHLASNMLSGTLPKD 301
           I       L N++ L L  N L+ T+P  
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLT-TIPNG 130

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSG-ISRLVR 143
             +  LT L  L  L L    +    P     L  L+ L M  + +   I       L  
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQS 256

Query: 144 LQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL 178
           L  + +  N       D +  L +L  + L  N  
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 98.3 bits (245), Expect = 8e-22
 Identities = 51/236 (21%), Positives = 92/236 (38%), Gaps = 31/236 (13%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTL 147
           T   L  L VL L    I        + L+SL  L++  N+L   IPSG    L +L+ L
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLREL 152

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSL-KSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
            +  N  +      ++ + +L  L L +  +L+     +   +  L  + +    +   +
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM 211

Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLS 266
           P+++ L  L  L++  N                 +    F G        L+ L+ L + 
Sbjct: 212 PNLTPLVGLEELEMSGNHFPE-------------IRPGSFHG--------LSSLKKLWVM 250

Query: 267 FNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGN 322
            + +S I  +    L ++  L+LA N LS +LP DL   + L  +     +    N
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF--TPLRYL---VELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 7e-14
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 25/165 (15%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
            +P GI      + L +  N       D +  L +L VL L  N ++     +   +A+L
Sbjct: 68  EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 193 TDIAMSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIP 251
             + + +N L+         L+ L  L LR N ++S             +    F+    
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-------------IPSYAFNR--- 169

Query: 252 QQFGELAQLQHLDLS-FNDLSGIPPSVLFSLPNISYLHLASNMLS 295
                +  L  LDL     L  I       L N+ YL+L    + 
Sbjct: 170 -----VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 214 SLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
               +      L   +P  +P     + L  N         F  L  L+ L L  N +  
Sbjct: 55  QFSKVVCTRRGLSE-VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113

Query: 273 IPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
           I       L +++ L L  N L+  +P   
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT-VIPSGA 142

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSG-ISRLVR 143
             +  LT L  L  L +         P   H LSSL+ L + ++ +   I       L  
Sbjct: 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLAS 267

Query: 144 LQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL 178
           L  L +  N       D +  L  L  L L  N  
Sbjct: 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.1 bits (244), Expect = 2e-21
 Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 25/220 (11%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
           +     L L  L +   LPD +     + +L+++ N L  ++P   + L   + L    N
Sbjct: 58  INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNAL-ISLPELPASL---EYLDACDN 110

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSAL 212
                +P+     ++L  L + +NQL    P        L  I   NN+L+  LP+    
Sbjct: 111 RLST-LPE---LPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPE--LP 159

Query: 213 TSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQ----HLDLSFN 268
           TSL VL +R N+L + LP +P+ L  + +S NL   ++P         +          N
Sbjct: 160 TSLEVLSVRNNQL-TFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217

Query: 269 DLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
            ++ IP + + SL     + L  N LS  + + LS  +  
Sbjct: 218 RITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 8e-14
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 14/148 (9%)

Query: 156 DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSL 215
            +    WD      +     N+         C I   +++ ++   LS  LPD +    +
Sbjct: 27  ADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPD-NLPPQI 82

Query: 216 HVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPP 275
            VL++ +N L S LP +P  L  +    N  S  +P+       L+HLD+  N L+ +P 
Sbjct: 83  TVLEITQNALIS-LPELPASLEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLTMLPE 137

Query: 276 SVLFSLPNISYLHLASNMLSGTLPKDLS 303
                   + Y++  +N L+  LP+  +
Sbjct: 138 ----LPALLEYINADNNQLT-MLPELPT 160

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 25/113 (22%)

Query: 198 SNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGE 256
             N +SG   D  SA        L     +  + L+ + L                    
Sbjct: 18  FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-------------------- 57

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD 309
           + Q   L L+  +LS +P ++    P I+ L +  N L  +LP+  +    LD
Sbjct: 58  INQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALI-SLPELPASLEYLD 106

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRL 144
           S ++ L +LT L  L   +  I    P  +  L++L+ L ++ N L       ++ L  L
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNL 245

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG 204
             L +  N   +  P     L+ LT L L +NQ+     S +  +  LT++ ++ N+L  
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301

Query: 205 KLPDMSALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
            +  +S L +L  L L  N +    P+     L  +    N  S         L  +  L
Sbjct: 302 -ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWL 358

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISD 313
               N +S + P  L +L  I+ L L     +       +  S  +++ +
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.3 bits (230), Expect = 7e-20
 Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 17/212 (8%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
           + T T L       L    +   +      L  +  L      +      G+  L  L  
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQ 72

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
           +    N   D  P    +L+ L  + + +NQ+     + +  +  LT + + NN+++  +
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD-I 127

Query: 207 PDMSALTSLHVLDLRENKLD--SGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLD 264
             +  LT+L+ L+L  N +   S L  +   L  +     + +   P     L  L+ LD
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTS-LQQLSFGNQV-TDLKP--LANLTTLERLD 183

Query: 265 LSFNDLSGIPPSVLFSLPNISYLHLASNMLSG 296
           +S N +S I    L  L N+  L   +N +S 
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.8 bits (226), Expect = 3e-19
 Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 16/223 (7%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
           L  LT L  LSL    +       +  L++L  LD+++N +    P  +S L +L  L +
Sbjct: 217 LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
             N   +  P     L+ LT L L  NQL+    S I  +  LT + +  N +S  +  +
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-ISPV 327

Query: 210 SALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFN 268
           S+LT L  L    NK+     L     +  +    N  S   P     L ++  L L+  
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 269 DLSGIPPSVLFSLPNISYLHLASNMLSGTL-PKDLSCGSKLDS 310
             +  P +      N+S  +   N+    + P  +S G     
Sbjct: 386 AWTNAPVNY---KANVSIPNTVKNVTGALIAPATISDGGSYTE 425

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.4 bits (212), Expect = 1e-17
 Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 11/211 (5%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
           L+ LT L  L L +  I    P  +  L++L  L+++ N L     S IS L  L  LT+
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTL 316

Query: 150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
             N   D  P    SL+ L  L   +N++     SS+  +  +  ++  +N++S  L  +
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD-LTPL 371

Query: 210 SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI-PQQFGELAQLQHLDLSFN 268
           + LT +  L L +    +        +      +N+    I P    +       D+++N
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

Query: 269 DLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
            L      V ++      +   +   SGT+ 
Sbjct: 432 -LPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 11/173 (6%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRL 144
             ++ ++ L  L  L+L    I    P  +  L+ L+ L   +N +     S ++ L  +
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG 204
             L+   N   D  P    +L+ +T L L         P +     ++ +   +      
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALI 412

Query: 205 KLPDMSALTSLHVLDLRENKLDSGLPLMP---KGLVTVLLSRNLFSGAIPQQF 254
               +S   S    D+  N        +       VT+      FSG + Q  
Sbjct: 413 APATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 198 SNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGE 256
            +  ++ ++   +AL       L +  +   +       + T+   R             
Sbjct: 10  QDTPIN-QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK--SIDGVEY 66

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSG 296
           L  L  ++ S N L+ I P  L +L  +  + + +N ++ 
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 3e-21
 Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 20/225 (8%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTL 147
                 T++ L +    I    P     +  L +L +  N L  ++P GI     +L TL
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTL 146

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLK----GQFPSSICRIATLTDIAMSNNELS 203
           +M  N  +    D + + ++L  L L SN+L        PS       L    +S N LS
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-------LFHANVSYNLLS 199

Query: 204 GKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
                ++   ++  LD   N ++     +   L  + L  N  +            L  +
Sbjct: 200 ----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEV 253

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
           DLS+N+L  I       +  +  L++++N L   L         L
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 33/258 (12%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
           T    T+L+ L L S  +   +      + SL   ++S N L     S ++  + ++ L 
Sbjct: 160 TFQATTSLQNLQLSSNRL-THVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELD 211

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
              N  +  V         LT+L L+ N L     + +     L ++ +S NEL  K+  
Sbjct: 212 ASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMY 265

Query: 209 MS--ALTSLHVLDLRENKLDSGLPLMPKG---LVTVLLSRNLFSGAIPQQFGELAQLQHL 263
                +  L  L +  N+L + L L  +    L  + LS N     + +   +  +L++L
Sbjct: 266 HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNC 323
            L  N +  +  S   +L N   L L+ N        D  C S      +          
Sbjct: 324 YLDHNSIVTLKLSTHHTLKN---LTLSHN--------DWDCNSLRALFRNVARPAVDDAD 372

Query: 324 LSYDTPSQHKEAF-CKET 340
                  Q +    CKE+
Sbjct: 373 QHCKIDYQLEHGLCCKES 390

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 6/170 (3%)

Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA 190
           +  I S +        + +D    D        +L+N  +++ K++ ++    + +    
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 191 TLTDIAMSNNELSGKLPDMS--ALTSLHVLDLRENK---LDSGLPLMPKGLVTVLLSRNL 245
            +  + +++ ++  ++   +     ++  L +  N    L   +      L  ++L RN 
Sbjct: 70  QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            S      F    +L  L +S N+L  I      +  ++  L L+SN L+
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 23/108 (21%)

Query: 195 IAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQF 254
           I M   ++     D++ L +  ++  + + +               L   L         
Sbjct: 28  IDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRK-------------LPAALLDS------ 67

Query: 255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
               Q++ L+L+   +  I          I  L++  N +   LP  +
Sbjct: 68  --FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 112

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 11/220 (5%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTN 152
               +L L +  I          L +L  L + +N +   I  G  + LV+L+ L +  N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKN 110

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPDM-- 209
              + +P+       L  L +  N++     S    +  +  + +  N L S  + +   
Sbjct: 111 QLKE-LPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 210 SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQ-FGELAQLQHLDLSFN 268
             +  L  + + +  + +    +P  L  + L  N  +  +       L  L  L LSFN
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226

Query: 269 DLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
            +S +    L + P++  LHL +N L   +P  L+    +
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 36/199 (18%), Positives = 77/199 (38%), Gaps = 28/199 (14%)

Query: 117 LSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNV--PDWWDSLSNLTVLSL 173
             +L+ L +  N +   +   + + L ++  + + TN    +      +  +  L+ + +
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 174 KSNQL----KGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKL-- 225
               +    +G  PS       LT++ +  N+++ K+    +  L +L  L L  N +  
Sbjct: 179 ADTNITTIPQGLPPS-------LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA 230

Query: 226 -DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGI------PPSVL 278
            D+G       L  + L+ N     +P    +   +Q + L  N++S I      PP   
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 279 FSLPNISYLHLASNMLSGT 297
               + S + L SN +   
Sbjct: 290 TKKASYSGVSLFSNPVQYW 308

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 9e-18
 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 20/193 (10%)

Query: 115 HRLSSLELLDMSSNFL-FGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS 172
           + L+ + ++++ +N L    I +G    + +L  + +        +P       +LT L 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELH 198

Query: 173 LKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKL---DS 227
           L  N++     +S+  +  L  + +S N +S  + +  ++    L  L L  NKL     
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPG 257

Query: 228 GLPLMPKGLVTVLLSRNLFSG------AIPQQFGELAQLQHLDLSFNDL--SGIPPSVLF 279
           GL      +  V L  N  S         P    + A    + L  N +    I PS   
Sbjct: 258 GLADHKY-IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 280 SLPNISYLHLASN 292
            +   + + L + 
Sbjct: 317 CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 214 SLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
            L V+   +  L+  +P  +P     + L  N  +      F  L  L  L L  N +S 
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 273 IPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
           I P     L  +  L+L+ N L   LP+ +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 12/142 (8%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDT 151
             +L  L L    I       +  L++L  L +S N +  A+ +G  +    L+ L ++ 
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNN 249

Query: 152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT------LTDIAMSNNELS-G 204
           N     VP        + V+ L +N +     +  C           + +++ +N +   
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 205 KLPD--MSALTSLHVLDLRENK 224
           ++       +     + L   K
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNYK 330

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 41/230 (17%), Positives = 73/230 (31%), Gaps = 39/230 (16%)

Query: 85  SFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLEL--LDMSSNFLFGAIPSGISRLV 142
                       ++ +     +     D +   +      L++ S  L    P    RL 
Sbjct: 47  HSAWRQANSNNPQIETRTGRAL-KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLS 104

Query: 143 RLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL 202
            LQ +T+D       +PD     + L  L+L  N L+   P+SI  +  L ++++     
Sbjct: 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162

Query: 203 SGKLPD----------MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ 252
             +LP+             L +L  L L    + S                      +P 
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS----------------------LPA 200

Query: 253 QFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
               L  L+ L +  + LS + P+ +  LP +  L L         P   
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 6e-21
 Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
            +    L         P  D + +       D +             R        ++T 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-------RWHSAWRQANSNNPQIETR 63

Query: 153 FFDD--NVPDWWDSLS--NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
                    D  +  +      L L+S  L  QFP    R++ L  + +    L  +LPD
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 209 -MSALTSLHVLDLRENKLDSGLP-----LMPKGLVTVLLSRN---------LFSGAIPQQ 253
            M     L  L L  N L + LP     L    L  + +            L S     +
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASIASL--NRLRELSIRACPELTELPEPLASTDASGE 178

Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
              L  LQ L L +  +  +P S + +L N+  L + ++ LS  L   +    KL
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 32/214 (14%)

Query: 90  LTRLTTLRVL-----SLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI------ 138
           + +   L  L      L +L      P  I  L+ L  L + +      +P  +      
Sbjct: 123 MQQFAGLETLTLARNPLRAL------PASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 139 ---SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDI 195
                LV LQ+L ++       +P    +L NL  L ++++ L      +I  +  L ++
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 196 AMSNNELSGKLPD-MSALTSLHVLDLRE-NKLDSGLP-----LMPKGLVTVLLSRNLFSG 248
            +         P        L  L L++ + L + LP     L    L  + L   +   
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRL--TQLEKLDLRGCVNLS 291

Query: 249 AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP 282
            +P    +L     + +  +  + +      + P
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 3e-17
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 32/209 (15%)

Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
           G      H  S  E L    +         +S+  R      +         +     +N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNN 57

Query: 168 LTVLSLKSNQLKGQFPSSI--CRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENK 224
             + +     LK      +          + + +  L  + PD    L+ L  + +    
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 225 LDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNI 284
           L                        +P    + A L+ L L+ N L  +P S + SL  +
Sbjct: 116 LME----------------------LPDTMQQFAGLETLTLARNPLRALPAS-IASLNRL 152

Query: 285 SYLHLASNMLSGTLPKDLSCGSKLDSISD 313
             L + +      LP+ L+          
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQG 181

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRL 141
            I S   ++  L  L+ L + +  +   L   IH L  LE LD+         P      
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 142 VRLQTLTM-DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNN 200
             L+ L + D +     +P     L+ L  L L+      + PS I ++     I +  +
Sbjct: 253 APLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 201 ELS 203
             +
Sbjct: 312 LQA 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.1 bits (239), Expect = 9e-21
 Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 20/225 (8%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTL 147
                 T++ L +    I    P     +  L +L +  N L  ++P GI     +L TL
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTL 152

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLK----GQFPSSICRIATLTDIAMSNNELS 203
           +M  N  +    D + + ++L  L L SN+L        PS       L    +S N LS
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-------LFHANVSYNLLS 205

Query: 204 GKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHL 263
                ++   ++  LD   N ++     +   L  + L  N  +            L  +
Sbjct: 206 ----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEV 259

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
           DLS+N+L  I       +  +  L++++N L   L         L
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 303

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.7 bits (204), Expect = 1e-16
 Identities = 52/254 (20%), Positives = 91/254 (35%), Gaps = 32/254 (12%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
           T    T+L+ L L S  +   +   +  + SL   ++S N L     S ++  + ++ L 
Sbjct: 166 TFQATTSLQNLQLSSNRL-THVDLSL--IPSLFHANVSYNLL-----STLAIPIAVEELD 217

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
              N  +  V         LT+L L+ N L     + +     L ++ +S NEL  K+  
Sbjct: 218 ASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMY 271

Query: 209 --MSALTSLHVLDLRENKLDSGLPLMPKG---LVTVLLSRNLFSGAIPQQFGELAQLQHL 263
                +  L  L +  N+L   L L  +    L  + LS N     + +   +  +L++L
Sbjct: 272 HPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNC 323
            L  N +  +  S   +L N   L L+ N        D  C S      +          
Sbjct: 330 YLDHNSIVTLKLSTHHTLKN---LTLSHN--------DWDCNSLRALFRNVARPAVDDAD 378

Query: 324 LSYDTPSQHKEAFC 337
                  Q +   C
Sbjct: 379 QHCKIDYQLEHGLC 392

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.7 bits (191), Expect = 6e-15
 Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 26/175 (14%)

Query: 123 LDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQF 182
           +DM +  ++         L   + +T   +          DS   + +L+L   Q++   
Sbjct: 34  IDMQTQDVYFGFED--ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 183 PSSICRIATLTDIAMSNNELSGKLPDM--SALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
             +     T+  + M  N +   LP      +  L VL L  N L S             
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS------------- 137

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           L R +F            +L  L +S N+L  I      +  ++  L L+SN L+
Sbjct: 138 LPRGIFHN--------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 1e-12
 Identities = 24/174 (13%), Positives = 65/174 (37%), Gaps = 25/174 (14%)

Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA 190
           +  I S +        + +D    D        +L+N  +++ K++ ++    + +    
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 191 TLTDIAMSNNELSGKLPDMS--ALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSG 248
            +  + +++ ++  ++   +     ++  L +  N +               L  ++F  
Sbjct: 76  QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-------------LPPHVFQN 121

Query: 249 AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
                   +  L  L L  NDLS +P  +  + P ++ L +++N L   +  D 
Sbjct: 122 --------VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 54/210 (25%), Positives = 81/210 (38%), Gaps = 17/210 (8%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTN 152
              + + L    I            +L +L + SN L   I +   + L  L+ L +  N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90

Query: 153 FFDDNVP-DWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-- 209
               +V    +  L  L  L L    L+   P     +A L  + + +N L   LPD   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 210 SALTSLHVLDLRENKLDS-------GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQH 262
             L +L  L L  N++ S       GL      L  +LL +N  +   P  F +L +L  
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLH----SLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 263 LDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
           L L  N+LS +P   L  L  + YL L  N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 216 HVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIP 274
                 +  L + +P+ +P     + L  N  S      F     L  L L  N L+ I 
Sbjct: 14  VTTSCPQQGLQA-VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 275 PSVLFSLPNISYLHLASNMLSGTLPKD 301
            +    L  +  L L+ N    ++   
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPA 99

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 22/91 (24%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTL 147
           T   L  L  L L    I          L SL+ L +  N +   +       L RL TL
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTL 206

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL 178
            +  N       +    L  L  L L  N  
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 53/241 (21%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 72  IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLF 131
           I N T++E    + F  + T L +L +  + +              + + +  +S +   
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT- 341

Query: 132 GAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA 190
             I             L    N F D+V     +L  L  L L+ N LK  F        
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400

Query: 191 TLTDIAMSNNELSGKLPDM------SALTSLHVLDLRENKLDSGLPLMPKGLVTVL-LSR 243
            ++ +   +  L+  L         +   S+ VL+L  N L   +       V VL L  
Sbjct: 401 NMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN 459

Query: 244 NLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
           N    +IP+    L  LQ L+++ N L  +P  V   L ++ Y+ L  N      P D +
Sbjct: 460 NRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN------PWDCT 512

Query: 304 C 304
           C
Sbjct: 513 C 513

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 36/208 (17%), Positives = 65/208 (31%), Gaps = 56/208 (26%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
            +           + +G   P  +         ++D S+  L   +P  +    R + L+
Sbjct: 7   PIVGSFHFVCALALIVGSMTPFSN-----ELESMVDYSNRNLT-HVPKDLP--PRTKALS 58

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
           +  N   +        LS L VL L  N+++      +                      
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVF--------------------- 96

Query: 209 MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFN 268
                 L  LD+  N+L + +                           +A L+HLDLSFN
Sbjct: 97  -LFNQDLEYLDVSHNRLQN-IS-----------------------CCPMASLRHLDLSFN 131

Query: 269 DLSGIPPSVLFS-LPNISYLHLASNMLS 295
           D   +P    F  L  +++L L++    
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 36/264 (13%), Positives = 83/264 (31%), Gaps = 49/264 (18%)

Query: 90  LTRLTTLRVLS--LVSLGIWGPLPDKIHRLSSLELLDMSSNFL----FGAI--------- 134
           +  L  L +       L    P+  +   L+ L  L +S+          +         
Sbjct: 120 MASLRHLDLSFNDFDVL----PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

Query: 135 -----------PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQ-- 181
                       +   ++     L +  +           S++ L  L L + +L  +  
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 182 -----FPSSICRIATLTDIAMSNNELSGK-------LPDMSALTSLHVLDLRENKLDSGL 229
                F S + R  TL ++ + + E + K             +  L++ +L   +     
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 230 P-----LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNI 284
                    K L+   +   +F  +    +   A++    LS +D   I      S  + 
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 285 SYLHLASNMLSGTLPKDLSCGSKL 308
           ++L+   N+ + ++ +  S   +L
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRL 379

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 214 SLHVLDLRENKLDSGLPLMPKGL---VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFND 269
              ++D     L      +PK L      L LS+N  S         L++L+ L LS N 
Sbjct: 32  LESMVDYSNRNLTH----VPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87

Query: 270 LSGIPPSVLFSLPNISYLHLASNMLSGTLPKD 301
           +  +   V     ++ YL ++ N L   +   
Sbjct: 88  IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC 118

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.9 bits (236), Expect = 3e-20
 Identities = 60/252 (23%), Positives = 98/252 (38%), Gaps = 29/252 (11%)

Query: 81  FSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISR 140
           FS++S       L  L+VL+L    I     +  + L +L++L++S N L     S    
Sbjct: 279 FSLNSR--VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 141 LVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLK--GQFPS------SICRIATL 192
           L ++  + +  N         +  L  L  L L+ N L      PS      S  ++ TL
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396

Query: 193 TDIAMSNNELS---------GKLPDMSALTSLHVLDLRENKLDS----GLPLMPKGLVTV 239
             I ++ N +            L  +  +  L +L L +N+  S      P     L  +
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 240 LLSRNLFSGAIPQQ-----FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
            L  N+   A   +     F  L+ LQ L L+ N L+ +PP V   L  +  L L SN L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 295 SGTLPKDLSCGS 306
           +  L  +    +
Sbjct: 517 T-VLSHNDLPAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.6 bits (217), Expect = 6e-18
 Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 26/220 (11%)

Query: 117 LSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNV-PDWWDSLSNLTVLSLKS 175
           L++ E L +S N++     S    L +LQ L + + +    +  + + +L NL +L L S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA---LTSLHVLDLRENKLDSGLPLM 232
           +++    P +   +  L ++ +    LS  +        L +L  LDL +N++ S L L 
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYL- 140

Query: 233 PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSL--PNISYLHLA 290
                                FG+L  L+ +D S N +  +    L  L    +S+  LA
Sbjct: 141 ------------------HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 291 SNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPS 330
           +N L   +  D              ++   GN  + D   
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.6 bits (217), Expect = 6e-18
 Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 29/243 (11%)

Query: 80  SFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSG-I 138
               D+F   L  L  LR L    L            L +L  LD+S N +         
Sbjct: 87  FLHPDAF-QGLFHLFELR-LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 139 SRLVRLQTLTMDTNFFDDNVPDWWDSLS--NLTVLSLKSNQLKGQFPSSICRIA------ 190
            +L  L+++   +N          + L    L+  SL +N L  +      +        
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 191 TLTDIAMSNNELSGKLPDMSA-------------LTSLHVLDLRENKL-----DSGLPLM 232
            L  + +S N  +  +    +                +       + +     ++   L 
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 233 PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              +  + LS         + F  L  L+ L+L++N ++ I     + L N+  L+L+ N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 293 MLS 295
           +L 
Sbjct: 325 LLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.5 bits (209), Expect = 6e-17
 Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 22/218 (10%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
               L  +  + L    I          L  L+ LD+  N L     + I  +  +  + 
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIF 387

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG-QFPSSICRIATLTDIAMSNNELSGKLP 207
           +  N                 ++ L  N+L+       + R+  L  + ++ N  S    
Sbjct: 388 LSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 208 DM--SALTSLHVLDLRENKLDSGLPLMPKG--------LVTVLLSRNLFSGAIPQQFGEL 257
           D   S   SL  L L EN L                  L  + L+ N  +   P  F  L
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503

Query: 258 AQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
             L+ L L+ N L+ +  + L    N+  L ++ N L 
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.3 bits (206), Expect = 1e-16
 Identities = 40/238 (16%), Positives = 86/238 (36%), Gaps = 34/238 (14%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLS--SLELLDMSSNFLFGAIPSGIS------ 139
            +  +L +L+ +   S  I+     ++  L   +L    +++N L+  +           
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 140 RLVRLQTLTMDTNFFDDNVPD------------WWDSLSNLTVLSLKSNQLKGQFPSSIC 187
           R + L+ L +  N +  ++                    ++       + +K    ++  
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 188 RIA--TLTDIAMSNNELSGKLPDM-SALTSLHVLDLRENKLD-------SGLPLMPKGLV 237
            +A  ++  + +S+  +      +   L  L VL+L  NK++        GL      L 
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD----NLQ 317

Query: 238 TVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            + LS NL        F  L ++ ++DL  N ++ I       L  +  L L  N L+
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 2e-15
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 163 DSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMS--ALTSLHVLDL 220
             L+    L L  N ++    SS   +  L  + + +      +   +   L +L +LDL
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 221 RENK---LDSGLPLMPKGLVTVLLSRNLFSGAI--PQQFGELAQLQHLDLSFNDLSGIPP 275
             +K   L          L  + L     S A+     F  L  L  LDLS N +  +  
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 276 SVLFS-LPNISYLHLASNMLSGTLPKDLS 303
              F  L ++  +  +SN +      +L 
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELE 169

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.9 bits (192), Expect = 6e-15
 Identities = 41/257 (15%), Positives = 85/257 (33%), Gaps = 34/257 (13%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKI-HRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQ 145
           ++   L  L++L L S      +  +    L +L +LD+ S+ +   +       L  L 
Sbjct: 42  SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLF 100

Query: 146 TLTMDTNFFDDNV--PDWWDSLSNLTVLSLKSNQLKG-QFPSSICRIATLTDIAMSNNEL 202
            L +      D V    ++ +L  LT L L  NQ++      S  ++ +L  I  S+N++
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 203 SGKLPDMS----ALTSLHVLDLRENKLDSGLPLMPKGLVTVL---------LSRNLFSGA 249
              + +         +L    L  N L S + +     +            +S N ++  
Sbjct: 161 F-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 250 IP------------QQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS--YLHLASNMLS 295
           I                     +      F+++     +    L   S  +L L+   + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 296 GTLPKDLSCGSKLDSIS 312
               +       L  ++
Sbjct: 280 SLNSRVFETLKDLKVLN 296

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 197 MSNNELSGKLPDMSALTSLHVLDLRENKL----DSGLPLMPKGLVTVLLSRNLFSGAI-P 251
                L+ ++P    L +   L L  N +     S  P + + L  + L        I  
Sbjct: 11  YRFCNLT-QVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQ-LQLLELGSQYTPLTIDK 66

Query: 252 QQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           + F  L  L+ LDL  + +  + P     L ++  L L    LS
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 242 SRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKD 301
             NL    +PQ    L   + L LSFN +  +  S    L  +  L L S     T+ K+
Sbjct: 13  FCNLTQ--VPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.8 bits (233), Expect = 5e-20
 Identities = 55/230 (23%), Positives = 89/230 (38%), Gaps = 37/230 (16%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRL--------------SSLELLDMSSNFLFGAI 134
               L  L + S     +   LP  + +L                L+ L +S N L  ++
Sbjct: 99  LPPGLLELSIFSNPLTHL-PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL-ASL 156

Query: 135 PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTD 194
           P+  S L     L    N     +P      S L  LS+  NQL    P+       L  
Sbjct: 157 PALPSEL---CKLWAYNNQLTS-LPM---LPSGLQELSVSDNQLA-SLPTLPSE---LYK 205

Query: 195 IAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQF 254
           +   NN L+  LP  +  + L  L +  N+L S LP++P  L  +++S N  + ++P   
Sbjct: 206 LWAYNNRLT-SLP--ALPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM-- 258

Query: 255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC 304
              + L  L +  N L+ +P S L  L + + ++L  N LS         
Sbjct: 259 -LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLS-ERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 24/194 (12%)

Query: 116 RLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
             +   +L++  + L   +P  +     + TL +  N     +P        L  L +  
Sbjct: 38  LNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLTS-LPA---LPPELRTLEVSG 90

Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
           NQL    P     +  L+  +     L       +  + L  L +  N+L S LP++P G
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP------ALPSGLCKLWIFGNQLTS-LPVLPPG 142

Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           L  + +S N  + ++P      ++L  L    N L+ +P         +  L ++ N L+
Sbjct: 143 LQELSVSDNQLA-SLP---ALPSELCKLWAYNNQLTSLPM----LPSGLQELSVSDNQLA 194

Query: 296 GTLPKDLSCGSKLD 309
            +LP   S   KL 
Sbjct: 195 -SLPTLPSELYKLW 207

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 39/209 (18%), Positives = 71/209 (33%), Gaps = 39/209 (18%)

Query: 82  SIDSFVTTLTRLTTLRVLS--LVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGIS 139
            + S     + L  L   +  L SL      P      S L+ L +S N L  ++P+  S
Sbjct: 152 QLASLPALPSELCKLWAYNNQLTSL------PMLP---SGLQELSVSDNQL-ASLPTLPS 201

Query: 140 RLVRL-----------------QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQF 182
            L +L                 + L +  N    ++P      S L  L +  N+L    
Sbjct: 202 ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPV---LPSELKELMVSGNRLT-SL 256

Query: 183 PSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLL 241
           P        L  +++  N+L+ +LP+ +  L+S   ++L  N L        + + +   
Sbjct: 257 PMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 242 SRNLFSGAIPQQFGELAQLQHLDLSFNDL 270
                            + + L L+  D 
Sbjct: 313 YSGPIIRFDMAGASAPRETRALHLAAADW 341

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 5e-20
 Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 10/202 (4%)

Query: 111 PDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
            D    L  L  L + +N +   I     S L +LQ L +  N   + +P   +  S+L 
Sbjct: 71  KDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVE-IPP--NLPSSLV 126

Query: 170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALT--SLHVLDLRENKLDS 227
            L +  N+++         +  +  I M  N L     +  A     L+ L + E KL  
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186

Query: 228 GLPLMPKGLVTVLLSRNLFSGAIPQQ-FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISY 286
               +P+ L  + L  N    AI  +     ++L  L L  N +  I    L  LP +  
Sbjct: 187 IPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 287 LHLASNMLSGTLPKDLSCGSKL 308
           LHL +N LS  +P  L     L
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLL 266

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 21/193 (10%)

Query: 115 HRLSSLELLDMSSNFL-FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
             L ++  ++M  N L       G    ++L  L +        +P   D    L  L L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPETLNELHL 200

Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDS---G 228
             N+++      + R + L  + + +N++   + +  +S L +L  L L  NKL     G
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAG 259

Query: 229 LPLMPKGLVTVLLSRNLFSGAIP-------QQFGELAQLQHLDLSFNDLS--GIPPSVLF 279
           LP +   L  V L  N  +  +            + A    + L  N +    + P+   
Sbjct: 260 LPDLKL-LQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 280 SLPNISYLHLASN 292
            + +   +   + 
Sbjct: 318 CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM--SALTSLHVLDLREN 223
            + T+L L++N +          +  L  + + NN++S K+ +   S L  L  L + +N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 224 KLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDL--SGIPPSVLFSL 281
            L    P +P  LV + +  N         F  L  +  +++  N L  SG  P   F  
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDG 171

Query: 282 PNISYLHLASNMLSGTLPKDL 302
             ++YL ++   L+  +PKDL
Sbjct: 172 LKLNYLRISEAKLT-GIPKDL 191

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 214 SLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
            L V+   +  L + +P  +      + L  N  S      F  L  L  L L  N +S 
Sbjct: 34  HLRVVQCSDLGLKA-VPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 273 IPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
           I       L  +  L+++ N L   +P +L
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNL 121

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 12/142 (8%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDT 151
             TL  L L    I     + + R S L  L +  N +   I +G  S L  L+ L +D 
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDN 250

Query: 152 NFFDDNVPDWWDSLSNLTVLSLKSNQLK----GQFPS--SICRIATLTDIAMSNNELSGK 205
           N     VP     L  L V+ L +N +       F       + A    I++ NN +   
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 206 L--PDM-SALTSLHVLDLRENK 224
              P     +T    +     K
Sbjct: 310 EVQPATFRCVTDRLAIQFGNYK 331

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 7e-20
 Identities = 42/225 (18%), Positives = 84/225 (37%), Gaps = 30/225 (13%)

Query: 90  LTRLTTLRV----LSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRL 144
           L  L  L +    LS +S             LSSL  L++  N       + + S L +L
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSW-------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 145 QTLTMDTNFFDDNVPD-WWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS 203
           Q L +        +    +  L+ L  L + ++ L+   P S+  I  ++ + +   +  
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 204 GKLPD--MSALTSLHVLDLRENKLDS------------GLPLMPKGLVTVLLSRNLFSGA 249
             L +  +   +S+  L+LR+  LD+             L         V ++       
Sbjct: 212 -LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT-FRNVKITDESLF-Q 268

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
           + +   +++ L  L+ S N L  +P  +   L ++  + L +N  
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 11/179 (6%)

Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA 190
             +IPSG++    +++L +  N              NL  L L SN +      S   + 
Sbjct: 43  LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100

Query: 191 TLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKL----DSGLPLMPKGLVTVLLSRN 244
           +L  + +S N LS  L       L+SL  L+L  N      ++ L      L  + +   
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 245 LFSGAIPQQ-FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
                I ++ F  L  L+ L++  +DL    P  L S+ N+S+L L        L +  
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 26/217 (11%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTN 152
             ++ L L +  I       + R  +L+ L ++SN +   I     S L  L+ L +  N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYN 110

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSI-CRIATLTDIAMSNNELSGKLPDM-- 209
           +  +    W+  LS+LT L+L  N  K    +S+   +  L  + + N +   K+     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 210 SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFND 269
           + LT L  L++  + L S                             +  + HL L    
Sbjct: 171 AGLTFLEELEIDASDLQS-------------YEPKSLKS--------IQNVSHLILHMKQ 209

Query: 270 LSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS 306
              +    +    ++  L L    L      +LS G 
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 14/149 (9%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTL 147
               LT L  L + +  +    P  +  + ++  L +        +          ++ L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECL 227

Query: 148 TMDTNFFDDN--------VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSN 199
            +     D            +          + +    L  Q    + +I+ L ++  S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 200 NELSGKLPDM--SALTSLHVLDLRENKLD 226
           N+L   +PD     LTSL  + L  N  D
Sbjct: 287 NQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 211 ALTSLHVLDLRENKLDSGLPLMPKGL---VTVL-LSRNLFSGAIPQQFGELAQLQHLDLS 266
           +     +       L+S    +P GL   V  L LS N  +            LQ L L+
Sbjct: 29  SCDRNGICKGSSGSLNS----IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 84

Query: 267 FNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
            N ++ I      SL ++ +L L+ N LS  L    
Sbjct: 85  SNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSW 119

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.9 bits (216), Expect = 5e-19
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 14/189 (7%)

Query: 115 HRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
                L++LD+S   +   I  G    L  L TL +  N         +  LS+L  L  
Sbjct: 49  FSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA---LTSLHVLDLRENKLDS--- 227
               L       I  + TL ++ +++N +            LT+L  LDL  NK+ S   
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 228 ----GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN 283
                L  MP   +++ LS N  +   P  F E+ +L+ L L  N L  +P  +   L +
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTS 225

Query: 284 ISYLHLASN 292
           +  + L +N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 28/170 (16%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
            IP  +      + L +  N         + S   L VL L   +++     +   ++ L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 193 TDIAMSNNELSGKLPDM--SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI 250
           + + ++ N +   L     S L+SL  L   E  L S L                 +   
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LE----------------NFP- 119

Query: 251 PQQFGELAQLQHLDLSFNDLSGIP-PSVLFSLPNISYLHLASNMLSGTLP 299
               G L  L+ L+++ N +     P    +L N+ +L L+SN +  ++ 
Sbjct: 120 ---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 29/146 (19%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWG-PLPDKIHRLSSLELLDMSSNFLFGAIPSGI-S 139
           S+++F   +  L TL+ L++    I    LP+    L++LE LD+SSN +  +I      
Sbjct: 114 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLR 170

Query: 140 RLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSN 199
            L ++  L +                     L L  N +         +   L ++A+  
Sbjct: 171 VLHQMPLLNLS--------------------LDLSLNPMN-FIQPGAFKEIRLKELALDT 209

Query: 200 NELSGKLPD--MSALTSLHVLDLREN 223
           N+L   +PD     LTSL  + L  N
Sbjct: 210 NQLK-SVPDGIFDRLTSLQKIWLHTN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.0 bits (208), Expect = 6e-18
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 21/195 (10%)

Query: 117 LSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN 176
           ++S   ++     L  A+P  +        L +  N             + LT L+L   
Sbjct: 9   VASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 177 QLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMPKG 235
           +L          +  L  + +S+N+L   LP +   L +L VLD+  N+L S    +P G
Sbjct: 66  EL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS----LPLG 118

Query: 236 -------LVTVLLSRNLFSGAIPQQ-FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL 287
                  L  + L  N     +P        +L+ L L+ N+L+ +P  +L  L N+  L
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 288 HLASNMLSGTLPKDL 302
            L  N L  T+PK  
Sbjct: 178 LLQENSLY-TIPKGF 191

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 28/201 (13%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF 153
               +L L    ++      +   + L  L++    L   +      L  L TL +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQ 88

Query: 154 FDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSA 211
              ++P    +L  LTVL +  N+L      ++  +  L ++ +  NEL   LP   ++ 
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 212 LTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLS 271
              L  L L  N L               L   L +G        L  L  L L  N L 
Sbjct: 147 TPKLEKLSLANNNLTE-------------LPAGLLNG--------LENLDTLLLQENSLY 185

Query: 272 GIPPSVLFSLPNISYLHLASN 292
            IP    F    + +  L  N
Sbjct: 186 TIPKGF-FGSHLLPFAFLHGN 205

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 18/214 (8%)

Query: 111 PDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
                RL  L+ L +        I +     L  L  L +D N F       ++ L+NL 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 170 VLSLKSNQLKGQF--PSSICRIATLTDIAMSNNELSGKLPDM--SALTSLHVLDLRENKL 225
           VL+L    L G     +    + +L  + + +N +    P      +   HVLDL  NK+
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 226 DS----GLPLMPKGLVTVL---------LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
            S     L        T+L         ++             +   +  LDLS N    
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 273 IPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS 306
                 F     + +       S  +       +
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.4 bits (196), Expect = 9e-16
 Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 33/230 (14%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLV---RLQ 145
           TL RL+++ +  +    +         + +S+  LD+S N    ++       +   ++Q
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242

Query: 146 TLTMDTNFFD------------DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT-L 192
           +L +  ++              DN        S +    L  +++      S+    T L
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDL 301

Query: 193 TDIAMSNNELSGKLPDMS--ALTSLHVLDLRENKLDS-------GLPLMPKGLVTVLLSR 243
             + ++ NE++ K+ D +   LT L  L+L +N L S        L      L  + LS 
Sbjct: 302 EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD----KLEVLDLSY 356

Query: 244 NLFSGAIPQQ-FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
           N    A+  Q F  L  L+ L L  N L  +P  +   L ++  + L +N
Sbjct: 357 NHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLREN 223
           +++  + L  N +     +S  R+  L  + +        + +     L+SL +L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 224 KLDSGLPLMPKG-------LVTVLLSRN-LFSGAIPQ-QFGELAQLQHLDLSFNDLSGIP 274
           +       +  G       L  + L++  L    +    F  L  L+ L L  N++  I 
Sbjct: 90  QFLQ----LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 275 PSVLF-SLPNISYLHLASNMLSGTLPKD 301
           P+  F ++     L L  N +  ++ ++
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVK-SICEE 172

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 24/116 (20%)

Query: 190 ATLTDIAMSNNELSGKLPDMS--ALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFS 247
           A +  + +S N ++ +L + S   L  L  L + +      +                  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIR----------------- 71

Query: 248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML-SGTLPKDL 302
                 F  L+ L  L L +N    +       L N+  L L    L    L  + 
Sbjct: 72  ---NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 27/141 (19%)

Query: 88  TTLTRLTTLRVLSLVSLGIWGPLPDKI-HRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQ 145
           +  +  T L  L+L    I   + D     L+ L  L++S NFL G+I S +   L +L+
Sbjct: 293 SVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLE 350

Query: 146 TLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK 205
            L +  N         +  L NL  L+L +NQLK           ++ D           
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-----------SVPDGIFDR------ 393

Query: 206 LPDMSALTSLHVLDLRENKLD 226
                 LTSL  + L  N  D
Sbjct: 394 ------LTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 3/87 (3%)

Query: 217 VLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG-IPP 275
                   L   +P +P  +  V LS N  +      F  L  LQ L +        I  
Sbjct: 14  NAICINRGLHQ-VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN 72

Query: 276 SVLFSLPNISYLHLASNMLSGTLPKDL 302
           +    L ++  L L  N     L    
Sbjct: 73  NTFRGLSSLIILKLDYNQFL-QLETGA 98

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 41/209 (19%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 116 RLSSLELLDMSSNFLFGAIPSGISRLV---RLQTLTMDTNFFDDNVPDWWDSLS--NLTV 170
           +  SL+ L + +  +   I  G  R++    LQ LT++        P      +  +L +
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 171 LSLKSNQLKGQFPS----SICRIATLTDIAMSNNELSG-KLPDMSALTSLHVLDLRENKL 225
           L+L++     +              L  ++++           +    +L  LDL +N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 226 DSGLPLMP-------KGLVTVLLSRNLF---SGAIPQQFGELAQLQHLDLSFNDLSGIPP 275
                L+          L  + L        SG          QLQ LDLS N L     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 276 SVLFSLP-NISYLHLASNMLSGTLPKDLS 303
           +     P  ++ L+L+   L   +PK L 
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP 273

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 5e-16
 Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 45/206 (21%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
              L+VLS+          +++    +L  LD+S N   G                 +  
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-----------------ERG 190

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM--S 210
                 P  + +L  L + +       G   +       L  + +S+N L          
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 211 ALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDL 270
             + L+ L+L    L               + + L +           +L  LDLS+N L
Sbjct: 251 WPSQLNSLNLSFTGLKQ-------------VPKGLPA-----------KLSVLDLSYNRL 286

Query: 271 SGIPPSVLFSLPNISYLHLASNMLSG 296
              P      LP +  L L  N    
Sbjct: 287 DRNPS--PDELPQVGNLSLKGNPFLD 310

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 81.1 bits (201), Expect = 5e-17
 Identities = 58/324 (17%), Positives = 105/324 (32%), Gaps = 94/324 (29%)

Query: 449 GEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           G+GS G + +G           VA++ L   K   +   +   DF+        L H +L
Sbjct: 27  GDGSFGVVRRGEWDAPSGKTVSVAVKCL---KPDVLSQPEAMDDFIREVNAMHSLDHRNL 83

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           + L G  +            + +V E  P GS    L ++               + VA+
Sbjct: 84  IRLYGVVLTP---------PMKMVTELAPLGSLLDRLRKHQGH--FLLGTLSRYAVQVAE 132

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK--- 614
            + +L S      F +R L   N+LL    + K+ D+G+   + +++      E  K   
Sbjct: 133 GMGYLESK----RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPF 188

Query: 615 -------ARYG-FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE 666
                   +   F     + A                D + FG                 
Sbjct: 189 AWCAPESLKTRTF-----SHAS---------------DTWMFG----------------- 211

Query: 667 AFLLNEMASFGSQ--DGR--RRIVDPVVLT--------TCSQESLSIVVSITNKCICPEP 714
              L EM ++G +   G    +I+  +            C Q+    + ++  +C   +P
Sbjct: 212 -VTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQD----IYNVMVQCWAHKP 266

Query: 715 SSRPSFEDVLWNLQYAAQVQATAD 738
             RP+F  +   L  A      A+
Sbjct: 267 EDRPTFVALRDFLLEAQPTDMRAE 290

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 81.2 bits (201), Expect = 7e-17
 Identities = 58/318 (18%), Positives = 108/318 (33%), Gaps = 92/318 (28%)

Query: 449 GEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           GEG  G + +G L         VA++++    K    + +   +FLS         HP++
Sbjct: 43  GEGEFGSVMEGNLKQEDGTSLKVAVKTM----KLDNSSQREIEEFLSEAACMKDFSHPNV 98

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN---VLKWSDRLAILIG 555
           + LLG CIE  SQ      K  ++  ++  G    +L  +  E     +     L  ++ 
Sbjct: 99  IRLLGVCIEMSSQGIP---KPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVD 155

Query: 556 VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG-- 612
           +A  + +L +     +F +R L   N +L +     ++D+G+S  +   +          
Sbjct: 156 IALGMEYLSNR----NFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKM 211

Query: 613 ------PKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                  ++     ++   TS               + DV+ FG       V        
Sbjct: 212 PVKWIAIESLADR-VY---TS---------------KSDVWAFG-------V-------- 237

Query: 666 EAFLLNEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
               + E+A+ G                    R+  P     C  E    +  I   C  
Sbjct: 238 ---TMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQP---EDCLDE----LYEIMYSCWR 287

Query: 712 PEPSSRPSFEDVLWNLQY 729
            +P  RP+F  +   L+ 
Sbjct: 288 TDPLDRPTFSVLRLQLEK 305

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 80.3 bits (199), Expect = 8e-17
 Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 28/163 (17%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLVSLL 502
           G G  G ++ G   N   VAI+++   ++ ++       DF+       KL HP LV L 
Sbjct: 17  GSGQFGLVHLGYWLNKDKVAIKTI---REGAMS----EEDFIEEAEVMMKLSHPKLVQLY 69

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C+E           + LV E++ +G    +L       +      L + + V + + +
Sbjct: 70  GVCLEQAP--------ICLVTEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAY 119

Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
           L  +       +R L   N L+ E+++ K+SD+G++  + + +
Sbjct: 120 LEEA----CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 158

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 55/296 (18%), Positives = 115/296 (38%), Gaps = 33/296 (11%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAI-RSLTFLKKYSIQNLKVRLDFLSKLQHPH 497
            +F+ +  +G G  G +++ +   +    AI R     ++ + + +   +  L+KL+HP 
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 498 LVSLLGHCIESGSQDDSNTNK----VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
           +V      +E  + +    +     +++  +     + +  ++  C     + S  L I 
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF 124

Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
           + +A+AV FLHS  +     +R L  +NI      + K+ D+G+   M++ E+ +     
Sbjct: 125 LQIAEAVEFLHSKGL----MHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTP 180

Query: 613 PKARYGFLFICRT----SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF 668
             A         T    S E     +       + D+++ G IL E L+ P  T      
Sbjct: 181 MPAYARHTGQVGTKLYMSPE----QIHGNSYSHKVDIFSLGLILFE-LLYPFSTQMERVR 235

Query: 669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
            L ++         R +  P + T        +V       + P P  RP   +++
Sbjct: 236 TLTDV---------RNLKFPPLFTQKYPCEYVMV----QDMLSPSPMERPEAINII 278

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 61/313 (19%), Positives = 113/313 (36%), Gaps = 97/313 (30%)

Query: 449 GEGSRGKLYKGRLENG-----TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           G G+ G +YKG            VAI+ L   ++ +    K   + L        + +PH
Sbjct: 24  GSGAFGTVYKGLWIPEGEKVKIPVAIKEL---REATSP--KANKEILDEAYVMASVDNPH 78

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +  LLG C+ S          V L+ + +P G    ++ E+     +     L   + +A
Sbjct: 79  VCRLLGICLTS---------TVQLITQLMPFGCLLDYVREHKDN--IGSQYLLNWCVQIA 127

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG---- 612
           K +++L          +R L   N+L+   +  K++D+G++ ++   EK      G    
Sbjct: 128 KGMNYLEDR----RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 183

Query: 613 ----PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF 668
                ++    ++   T                  DV+++G           VT      
Sbjct: 184 KWMALESILHRIY---THQS---------------DVWSYG-----------VT------ 208

Query: 669 LLNEMASFGSQ--DGRR------------RIVDPVVLTTCSQESLSIVVSITNKCICPEP 714
            + E+ +FGS+  DG              R+  P     C+ +    V  I  KC   + 
Sbjct: 209 -VWELMTFGSKPYDGIPASEISSILEKGERLPQP---PICTID----VYMIMRKCWMIDA 260

Query: 715 SSRPSFEDVLWNL 727
            SRP F +++   
Sbjct: 261 DSRPKFRELIIEF 273

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 66/308 (21%), Positives = 108/308 (35%), Gaps = 88/308 (28%)

Query: 449 GEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLVSL 501
           G G+ G+++ GRL  + T VA++S             ++  FL       +  HP++V L
Sbjct: 123 GRGNFGEVFSGRLRADNTLVAVKSCR-----ETLPPDLKAKFLQEARILKQYSHPNIVRL 177

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           +G C +           +++V E +  G +   L        L+    L ++   A  + 
Sbjct: 178 IGVCTQKQP--------IYIVMELVQGGDFLTFLRTEGAR--LRVKTLLQMVGDAAAGME 227

Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG-------- 612
           +L S        +R L   N L+ E  + K+SD+G+S    +     + G          
Sbjct: 228 YLESK----CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTA 283

Query: 613 PKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN 671
           P+A  YG  +   +S                 DV++FG ILL                  
Sbjct: 284 PEALNYG-RY---SSES---------------DVWSFG-ILLW----------------- 306

Query: 672 EMASFGSQ--------DGRRRIVDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPSF 720
           E  S G+           R  +     L     C       V  +  +C   EP  RPSF
Sbjct: 307 ETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDA----VFRLMEQCWAYEPGQRPSF 362

Query: 721 EDVLWNLQ 728
             +   LQ
Sbjct: 363 STIYQELQ 370

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 64/339 (18%), Positives = 119/339 (35%), Gaps = 103/339 (30%)

Query: 431 YLEELKEATNNFDSLS-----FMGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQ 481
            ++ ++       SL       +G G  G +Y G L        + A++SL    + +  
Sbjct: 11  LVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL---NRIT-- 65

Query: 482 NLKVRLDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL 535
           ++     FL+         HP+++SLLG C+ S            +V  Y+ +G  R  +
Sbjct: 66  DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS-------PLVVLPYMKHGDLRNFI 118

Query: 536 SENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDY 594
                       D +   + VAK + +L S      F +R L   N +LDE    K++D+
Sbjct: 119 RNETHN--PTVKDLIGFGLQVAKGMKYLASK----KFVHRDLAARNCMLDEKFTVKVADF 172

Query: 595 GIS--IIMEEHEKLEAKGEG--------PKA-RYGFLFICRTSAENVVIVVDIQRTKLED 643
           G++  +  +E+  +  K            ++ +    F   T+                 
Sbjct: 173 GLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQ-KF---TTKS--------------- 213

Query: 644 DVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ--------------DGRRRIVDPV 689
           DV++FG                   LL E+ + G+                  RR++ P 
Sbjct: 214 DVWSFG------------------VLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP- 254

Query: 690 VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
               C       +  +  KC  P+   RPSF +++  + 
Sbjct: 255 --EYCPDP----LYEVMLKCWHPKAEMRPSFSELVSRIS 287

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 54/317 (17%), Positives = 103/317 (32%), Gaps = 91/317 (28%)

Query: 449 GEGSRGKLYKGRLENG----TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           G+G  G + + +L+        VA++ L    K  I       +FL       +  HPH+
Sbjct: 32  GKGEFGSVREAQLKQEDGSFVKVAVKML----KADIIASSDIEEFLREAACMKEFDHPHV 87

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN---VLKWSDRLAILIG 555
             L+G  + S ++         ++  ++ +G   A L  +        L     +  ++ 
Sbjct: 88  AKLVGVSLRSRAK--GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVD 145

Query: 556 VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG-- 612
           +A  + +L S     +F +R L   N +L E     ++D+G+S  +   +          
Sbjct: 146 IACGMEYLSSR----NFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKL 201

Query: 613 ------PKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
                  ++     L+   T                  DV+ FG                
Sbjct: 202 PVKWLALESLADN-LY---TV---------------HSDVWAFG---------------- 226

Query: 666 EAFLLNEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
               + E+ + G                 G  R+  P     C +E    V  +  +C  
Sbjct: 227 --VTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQP---PECMEE----VYDLMYQCWS 277

Query: 712 PEPSSRPSFEDVLWNLQ 728
            +P  RPSF  +   L+
Sbjct: 278 ADPKQRPSFTCLRMELE 294

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 29/168 (17%)

Query: 449 GEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           GEG  GK+   R +      G  VA++SL   K  S        D          L H +
Sbjct: 30  GEGHFGKVELCRYDPEGDNTGEQVAVKSL---KPESGG--NHIADLKKEIEILRNLYHEN 84

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V   G C E G         + L+ E++P+GS + +L +N  +  +    +L   + + 
Sbjct: 85  IVKYKGICTEDGGNG------IKLIMEFLPSGSLKEYLPKNKNK--INLKQQLKYAVQIC 136

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
           K + +L S      + +R L   N+L++     K+ D+G++  +E  +
Sbjct: 137 KGMDYLGSR----QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK 180

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 30/177 (16%)

Query: 449 GEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           G G  G++  GRL    +    VAI++L   K    +  + R DFLS      +  HP++
Sbjct: 58  GSGDSGEVCYGRLRVPGQRDVPVAIKAL---KAGYTE--RQRRDFLSEASIMGQFDHPNI 112

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           + L G                 +V EY+ NGS    L  +  +        + +L GV  
Sbjct: 113 IRLEGVVTRG--------RLAMIVTEYMENGSLDTFLRTHDGQ--FTIMQLVGMLRGVGA 162

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
            + +L        + +R L   N+L+D + + K+SD+G+S ++E+         G K
Sbjct: 163 GMRYLSDL----GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGK 215

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 77.6 bits (192), Expect = 5e-16
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 28/163 (17%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLVSLL 502
           G G  G +  G+ +    VA++ +   K+ S+       +F        KL HP LV   
Sbjct: 17  GSGQFGVVKLGKWKGQYDVAVKMI---KEGSMS----EDEFFQEAQTMMKLSHPKLVKFY 69

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C        S    +++V EYI NG    +L  +     L+ S  L +   V + + F
Sbjct: 70  GVC--------SKEYPIYIVTEYISNGCLLNYLRSHGKG--LEPSQLLEMCYDVCEGMAF 119

Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
           L S      F +R L   N L+D     K+SD+G++  + + +
Sbjct: 120 LESH----QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ 158

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 31/178 (17%)

Query: 449 GEGSRGKLYKGRLEN-----GTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           GEG  GK+     +      G  VA+++L   K  +    + R  +         L H H
Sbjct: 40  GEGHFGKVSLYCYDPTNDGTGEMVAVKAL---KADA--GPQHRSGWKQEIDILRTLYHEH 94

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++   G C ++G+        + LV EY+P GS R +L    P + +  +  L     + 
Sbjct: 95  IIKYKGCCEDAGAAS------LQLVMEYVPLGSLRDYL----PRHSIGLAQLLLFAQQIC 144

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
           + + +LH+      + +R L   N+LLD  R+ K+ D+G++  + E  +     E   
Sbjct: 145 EGMAYLHAQ----HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGD 198

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 77.7 bits (192), Expect = 8e-16
 Identities = 60/317 (18%), Positives = 119/317 (37%), Gaps = 85/317 (26%)

Query: 449 GEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           G+G+ G +   R +      G  VA++ L   +  + ++L+   DF         LQH +
Sbjct: 19  GKGNFGSVEMCRYDPLQDNTGEVVAVKKL---QHSTEEHLR---DFEREIEILKSLQHDN 72

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V   G C  +G ++      + L+ EY+P GS R +L ++     +     L     + 
Sbjct: 73  IVKYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKER--IDHIKLLQYTSQIC 124

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK-- 614
           K + +L +      + +R L T NIL++     K+ D+G++ ++ + ++     E  +  
Sbjct: 125 KGMEYLGTK----RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESP 180

Query: 615 --------ARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE 666
                         F   + A                DV++FG +L E     + T   +
Sbjct: 181 IFWYAPESLTESK-F---SVAS---------------DVWSFGVVLYE-----LFTYIEK 216

Query: 667 AFLLNEMASFGSQDGRRR---IVDPVVL------------TTCSQESLSIVVSITNKCIC 711
           +   +  A F    G  +   ++   ++              C  E    +  I  +C  
Sbjct: 217 SK--SPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDE----IYMIMTECWN 270

Query: 712 PEPSSRPSFEDVLWNLQ 728
              + RPSF D+   + 
Sbjct: 271 NNVNQRPSFRDLALRVD 287

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 58/203 (28%), Positives = 79/203 (38%), Gaps = 28/203 (13%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTN 152
              + L L S  +        HRL+ L LL ++ N L   +P+GI   L  L+TL +  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDN 95

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSIC-RIATLTDIAMSNNELSGKLPD--M 209
                    +D L NL  L L  NQLK   P  +   +  LT +++  NEL   LP    
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 210 SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFND 269
             LTSL  L L  N+L               +    F          L +L+ L L  N 
Sbjct: 154 DKLTSLKELRLYNNQLKR-------------VPEGAFDK--------LTELKTLKLDNNQ 192

Query: 270 LSGIPPSVLFSLPNISYLHLASN 292
           L  +P     SL  +  L L  N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 12/170 (7%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSIC-RIAT 191
           AIPS I      + L + +N         +  L+ L +L L  N+L+   P+ I   +  
Sbjct: 30  AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 192 LTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLV--TVL-LSRNLF 246
           L  + +++N+L   LP      L +L  L L  N+L S  P +   L   T L L  N  
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 247 SGAIPQQ-FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
             ++P+  F +L  L+ L L  N L  +P      L  +  L L +N L 
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 22/87 (25%)

Query: 213 TSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
                LDL+ NKL S             L    F          L +L+ L L+ N L  
Sbjct: 37  ADTKKLDLQSNKLSS-------------LPSKAFHR--------LTKLRLLYLNDNKLQT 75

Query: 273 IPPSVLFSLPNISYLHLASNMLSGTLP 299
           +P  +   L N+  L +  N L   LP
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQ-ALP 101

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 77.2 bits (191), Expect = 9e-16
 Identities = 65/313 (20%), Positives = 109/313 (34%), Gaps = 97/313 (30%)

Query: 449 GEGSRGKLYKGRLENG----TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           GEG  G++Y+G   N       VA+++    KK     L  +  F+S       L HPH+
Sbjct: 21  GEGFFGEVYEGVYTNHKGEKINVAVKTC---KKDC--TLDNKEKFMSEAVIMKNLDHPHI 75

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V L+G   E            +++ E  P G    +L  N     LK    +   + + K
Sbjct: 76  VKLIGIIEEE---------PTWIIMELYPYGELGHYLERNKNS--LKVLTLVLYSLQICK 124

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK--- 614
           A+ +L S     +  +R +   NIL+      KL D+G+S  +E+ +    K    +   
Sbjct: 125 AMAYLESI----NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDED--YYKASVTRLPI 178

Query: 615 -------ARYG-FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE 666
                    +  F     T+A                DV+ F                  
Sbjct: 179 KWMSPESINFRRF-----TTAS---------------DVWMFA----------------- 201

Query: 667 AFLLNEMASFGSQ--------DGRRRIVDPVVL---TTCSQESLSIVVSITNKCICPEPS 715
              + E+ SFG Q        D    +     L     C       + ++  +C   +PS
Sbjct: 202 -VCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPV----LYTLMTRCWDYDPS 256

Query: 716 SRPSFEDVLWNLQ 728
            RP F +++ +L 
Sbjct: 257 DRPRFTELVCSLS 269

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 30/177 (16%)

Query: 449 GEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           G G  G++  GRL    +    VAI++L   K    +  K R DFL       +  HP++
Sbjct: 54  GAGEFGEVCSGRLKLPSKKEISVAIKTL---KVGYTE--KQRRDFLGEASIMGQFDHPNI 108

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           + L G   +S          V +V EY+ NGS  + L ++  +        + +L G+A 
Sbjct: 109 IRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIAS 158

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
            + +L        + +R L   NIL++ + + K+SD+G+  ++E+  +      G K
Sbjct: 159 GMKYLSDM----GYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGK 211

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 28/163 (17%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLVSLL 502
           G G  G +  G+      VAI+ +   K+ S+       +F+        L H  LV L 
Sbjct: 33  GTGQFGVVKYGKWRGQYDVAIKMI---KEGSMS----EDEFIEEAKVMMNLSHEKLVQLY 85

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G C +           +F++ EY+ NG    +L E    +  +    L +   V +A+ +
Sbjct: 86  GVCTKQRP--------IFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEY 135

Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
           L S      F +R L   N L+++  + K+SD+G+S  + + E
Sbjct: 136 LESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 63/317 (19%), Positives = 123/317 (38%), Gaps = 85/317 (26%)

Query: 449 GEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           G+G+ G +   R +      G  VA++ L   +  + ++L+   DF         LQH +
Sbjct: 50  GKGNFGSVEMCRYDPLQDNTGEVVAVKKL---QHSTEEHLR---DFEREIEILKSLQHDN 103

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V   G C  +G ++      + L+ EY+P GS R +L ++     +     L     + 
Sbjct: 104 IVKYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKER--IDHIKLLQYTSQIC 155

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEG--- 612
           K + +L +      + +R L T NIL++     K+ D+G++ ++ ++ E  + K  G   
Sbjct: 156 KGMEYLGTK----RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESP 211

Query: 613 -----PKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE 666
                P++      F   + A                DV++FG +L E     + T   +
Sbjct: 212 IFWYAPESLTESK-F---SVAS---------------DVWSFGVVLYE-----LFTYIEK 247

Query: 667 AFLLNEMASFGSQDGRRR---IVDPVVL------------TTCSQESLSIVVSITNKCIC 711
           +   +  A F    G  +   ++   ++              C  E    +  I  +C  
Sbjct: 248 SK--SPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDE----IYMIMTECWN 301

Query: 712 PEPSSRPSFEDVLWNLQ 728
              + RPSF D+   + 
Sbjct: 302 NNVNQRPSFRDLALRVD 318

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 66/312 (21%), Positives = 105/312 (33%), Gaps = 97/312 (31%)

Query: 449 GEGSRGKLYKGRLENG----TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           GEG  G +++G   +       VAI++    K  +     VR  FL       +  HPH+
Sbjct: 24  GEGQFGDVHQGIYMSPENPALAVAIKTC---KNCTSD--SVREKFLQEALTMRQFDHPHI 78

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V L+G   E+          V+++ E    G  R+ L        L  +  +     ++ 
Sbjct: 79  VKLIGVITEN---------PVWIIMELCTLGELRSFLQVRKYS--LDLASLILYAYQLST 127

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK--- 614
           A+ +L S      F +R +   N+L+  +   KL D+G+S  ME+      K    K   
Sbjct: 128 ALAYLESK----RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST--YYKASKGKLPI 181

Query: 615 -------ARYG-FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE 666
                    +  F     TSA                DV+ FG                 
Sbjct: 182 KWMAPESINFRRF-----TSAS---------------DVWMFG----------------- 204

Query: 667 AFLLNEMASFGS--------QDGRRRIVDPVVL---TTCSQESLSIVVSITNKCICPEPS 715
              + E+   G          D   RI +   L     C       + S+  KC   +PS
Sbjct: 205 -VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPT----LYSLMTKCWAYDPS 259

Query: 716 SRPSFEDVLWNL 727
            RP F ++   L
Sbjct: 260 RRPRFTELKAQL 271

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 31/177 (17%)

Query: 449 GEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           G+G+ G +   R        G  VA++ L   +       +   DF         L    
Sbjct: 32  GKGNFGSVELCRYDPLGDNTGALVAVKQL---QHSGPDQQR---DFQREIQILKALHSDF 85

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V   G     G Q       + LV EY+P+G  R  L  +     L  S  L     + 
Sbjct: 86  IVKYRGVSYGPGRQS------LRLVMEYLPSGCLRDFLQRHRAR--LDASRLLLYSSQIC 137

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEG 612
           K + +L S        +R L   NIL++     K++D+G++ ++  + +    +  G
Sbjct: 138 KGMEYLGSR----RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPG 190

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 31/178 (17%)

Query: 449 GEGSRGKLYKGRLENGT-----YVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           G G  G++YKG L+  +      VAI++L   K    +  K R+DFL       +  H +
Sbjct: 53  GAGEFGEVYKGMLKTSSGKKEVPVAIKTL---KAGYTE--KQRVDFLGEAGIMGQFSHHN 107

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           ++ L G   +           + ++ EY+ NG+    L E   +        + +L G+A
Sbjct: 108 IIRLEGVISKY--------KPMMIITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIA 157

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
             + +L +     ++ +R L   NIL++ + + K+SD+G+S ++E+  +      G K
Sbjct: 158 AGMKYLANM----NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGK 211

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 77.5 bits (191), Expect = 2e-15
 Identities = 64/312 (20%), Positives = 110/312 (35%), Gaps = 90/312 (28%)

Query: 449 GEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           G G  G +Y G L        + A++SL    + +  ++     FL+         HP++
Sbjct: 98  GRGHFGCVYHGTLLDNDGKKIHCAVKSL---NRIT--DIGEVSQFLTEGIIMKDFSHPNV 152

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           +SLLG C+ S            +V  Y+ +G  R  +            D +   + VAK
Sbjct: 153 LSLLGICLRSEGS-------PLVVLPYMKHGDLRNFIRNETHN--PTVKDLIGFGLQVAK 203

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
            + FL S      F +R L   N +LDE    K++D+G++  M + E             
Sbjct: 204 GMKFLASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVH----NKTG 255

Query: 618 GFLFICRTSAENVVIVVDIQRTKLED-------DVYNFGFILLESLVGPIVTGKGEAFLL 670
             L +   + E+           L+        DV++FG                   LL
Sbjct: 256 AKLPVKWMALES-----------LQTQKFTTKSDVWSFG------------------VLL 286

Query: 671 NEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
            E+ + G+                  RR++ P     C       +  +  KC  P+   
Sbjct: 287 WELMTRGAPPYPDVNTFDITVYLLQGRRLLQP---EYCPDP----LYEVMLKCWHPKAEM 339

Query: 717 RPSFEDVLWNLQ 728
           RPSF +++  + 
Sbjct: 340 RPSFSELVSRIS 351

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 75.7 bits (187), Expect = 4e-15
 Identities = 68/344 (19%), Positives = 120/344 (34%), Gaps = 125/344 (36%)

Query: 443 DSLSFM---GEGSRGKLYKGRLENG------TYVAIRSLTFLKKYSIQNLKVRLDFL--- 490
            ++ FM   GE   GK+YKG L           VAI++L   K  +     +R +F    
Sbjct: 9   SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTL---KDKA--EGPLREEFRHEA 63

Query: 491 ---SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV---- 543
              ++LQHP++V LLG   +           + +++ Y  +G     L    P +     
Sbjct: 64  MLRARLQHPNVVCLLGVVTKDQP--------LSMIFSYCSHGDLHEFLVMRSPHSDVGST 115

Query: 544 ---------LKWSDRLAILIGVAK------AVHFLHSSVISGSFSNR-LTTNNILLDEHR 587
                    L+  D + ++  +A       + H +H          + L T N+L+ +  
Sbjct: 116 DDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVH----------KDLATRNVLVYDKL 165

Query: 588 IAKLSDYGISIIMEEHEKLEAKGEG--------PKA-RYGFLFICRTSAENVVIVVDIQR 638
             K+SD G+   +   +  +  G          P+A  YG  F   +             
Sbjct: 166 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGK-F---SIDS---------- 211

Query: 639 TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ--------------DGRRR 684
                D++++G       V           +L E+ S+G Q                R+ 
Sbjct: 212 -----DIWSYG-------V-----------VLWEVFSYGLQPYCGYSNQDVVEMIRNRQV 248

Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
           +  P     C       V ++  +C    PS RP F+D+   L+
Sbjct: 249 LPCP---DDCPAW----VYALMIECWNEFPSRRPRFKDIHSRLR 285

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 63/293 (21%), Positives = 119/293 (40%), Gaps = 60/293 (20%)

Query: 449 GEGSRGKLYKGRLEN-GTYVAIRSL--------TFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           G G  G++Y+G  +     VA+++L         FLK+ ++         + +++HP+LV
Sbjct: 229 GGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNLV 279

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            LLG C              +++ E++  G+   +L E   +  +     L +   ++ A
Sbjct: 280 QLLGVCTREPP--------FYIITEFMTYGNLLDYLRECNRQE-VSAVVLLYMATQISSA 330

Query: 560 VHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYG 618
           + +L       +F +R L   N L+ E+ + K++D+G+S +M         G        
Sbjct: 331 MEYLEKK----NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG-------A 379

Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT-GKG--EAFLLNEMAS 675
              I  T+ E     +   +  ++ DV+ FG +L E     I T G        L+++  
Sbjct: 380 KFPIKWTAPE----SLAYNKFSIKSDVWAFGVLLWE-----IATYGMSPYPGIDLSQVYE 430

Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
              +D R     P     C ++    V  +   C    PS RPSF ++    +
Sbjct: 431 LLEKDYRMER--P---EGCPEK----VYELMRACWQWNPSDRPSFAEIHQAFE 474

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 32/176 (18%)

Query: 449 GEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           G G+ G +YKG       +    VAI+ L   ++ +    K   + L        + +PH
Sbjct: 24  GSGAFGTVYKGLWIPEGEKVKIPVAIKEL---REATSP--KANKEILDEAYVMASVDNPH 78

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +  LLG C+ S          V L+ + +P G    ++ E+     +     L   + +A
Sbjct: 79  VCRLLGICLTS---------TVQLITQLMPFGCLLDYVREHKDN--IGSQYLLNWCVQIA 127

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
           K +++L          +R L   N+L+   +  K++D+G++ ++   EK      G
Sbjct: 128 KGMNYLEDR----RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGG 179

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 74.6 bits (184), Expect = 7e-15
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 32/165 (19%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSL--------TFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
           G G  G+++ G     T VA++SL         FL + ++         + +LQH  LV 
Sbjct: 22  GAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANL---------MKQLQHQRLVR 72

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
           L     +           ++++ EY+ NGS    L        L  +  L +   +A+ +
Sbjct: 73  LYAVVTQEP---------IYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGM 122

Query: 561 HFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
            F+       ++ +R L   NIL+ +    K++D+G++ ++E++E
Sbjct: 123 AFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 74.6 bits (184), Expect = 7e-15
 Identities = 55/315 (17%), Positives = 102/315 (32%), Gaps = 100/315 (31%)

Query: 449 GEGSRGKLYKGRLENG---TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLV 499
           G G+ G + +G          VAI+ L   K+ + +      + +       +L +P++V
Sbjct: 19  GCGNFGSVRQGVYRMRKKQIDVAIKVL---KQGTEK--ADTEEMMREAQIMHQLDNPYIV 73

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L+G C             + LV E    G     L     E  +  S+   +L  V+  
Sbjct: 74  RLIGVCQA---------EALMLVMEMAGGGPLHKFLVGKREE--IPVSNVAELLHQVSMG 122

Query: 560 VHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK---- 614
           + +L       +F +R L   N+LL     AK+SD+G+S  +   +         K    
Sbjct: 123 MKYLEEK----NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLK 178

Query: 615 ------ARYG-FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA 667
                   +  F     +S                 DV+++G                  
Sbjct: 179 WYAPECINFRKF-----SSRS---------------DVWSYG------------------ 200

Query: 668 FLLNEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
             + E  S+G +              +  +R+  P     C  E    + ++ + C   +
Sbjct: 201 VTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECP---PECPPE----LYALMSDCWIYK 253

Query: 714 PSSRPSFEDVLWNLQ 728
              RP F  V   ++
Sbjct: 254 WEDRPDFLTVEQRMR 268

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 68/309 (22%), Positives = 109/309 (35%), Gaps = 89/309 (28%)

Query: 449 GEGSRGKLYKGRLENG----TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHL 498
           GEG  G +++G   +       VAI++    K  +     VR  FL       +  HPH+
Sbjct: 399 GEGQFGDVHQGIYMSPENPAMAVAIKTC---KNCTSD--SVREKFLQEALTMRQFDHPHI 453

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V L+G   E+          V+++ E    G  R+ L        L  +  +     ++ 
Sbjct: 454 VKLIGVITEN---------PVWIIMELCTLGELRSFLQVRKFS--LDLASLILYAYQLST 502

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE-------KLEAKG 610
           A+ +L S      F +R +   N+L+  +   KL D+G+S  ME+         KL  K 
Sbjct: 503 ALAYLESK----RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 558

Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
             P++     F   TSA                DV+ FG                    +
Sbjct: 559 MAPESINFRRF---TSAS---------------DVWMFG------------------VCM 582

Query: 671 NEMASFGSQ--------DGRRRIVDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPS 719
            E+   G +        D   RI +   L     C       + S+  KC   +PS RP 
Sbjct: 583 WEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPT----LYSLMTKCWAYDPSRRPR 638

Query: 720 FEDVLWNLQ 728
           F ++   L 
Sbjct: 639 FTELKAQLS 647

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 32/176 (18%)

Query: 449 GEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
           G G  G ++KG            V I+ +   +  S +  +              L H H
Sbjct: 22  GSGVFGTVHKGVWIPEGESIKIPVCIKVI---EDKSGR--QSFQAVTDHMLAIGSLDHAH 76

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V LLG C  S          + LV +Y+P GS   H+ ++     L     L   + +A
Sbjct: 77  IVRLLGLCPGS---------SLQLVTQYLPLGSLLDHVRQHRGA--LGPQLLLNWGVQIA 125

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
           K +++L          +R L   N+LL      +++D+G++ ++   +K     E 
Sbjct: 126 KGMYYLEEH----GMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEA 177

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 76.3 bits (188), Expect = 8e-15
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 28/163 (17%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLVSLL 502
           G G  G+++       T VA++++                FL+       LQH  LV L 
Sbjct: 197 GAGQFGEVWMATYNKHTKVAVKTM-------KPGSMSVEAFLAEANVMKTLQHDKLVKLH 249

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
               +           ++++ E++  GS    L  +           +     +A+ + F
Sbjct: 250 AVVTKEP---------IYIITEFMAKGSLLDFLKSDEGSK-QPLPKLIDFSAQIAEGMAF 299

Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
           +       ++ +R L   NIL+    + K++D+G++ ++E++E
Sbjct: 300 IEQR----NYIHRDLRAANILVSASLVCKIADFGLARVIEDNE 338

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 59/300 (19%), Positives = 117/300 (39%), Gaps = 76/300 (25%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSL--------TFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
           G+G  G+++ G     T VAI++L         FL++  +         + KL+H  LV 
Sbjct: 193 GQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV---------MKKLRHEKLVQ 243

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
           L     E           +++V EY+  GS    L     +  L+    + +   +A  +
Sbjct: 244 LYAVVSEEP---------IYIVTEYMSKGSLLDFLKGETGK-YLRLPQLVDMAAQIASGM 293

Query: 561 HFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGF 619
            ++       ++ +R L   NIL+ E+ + K++D+G++ ++E++E    +G         
Sbjct: 294 AYVERM----NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG-------AK 342

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS- 678
             I  T+ E         R  ++ DV++FG                   LL E+ + G  
Sbjct: 343 FPIKWTAPE----AALYGRFTIKSDVWSFG------------------ILLTELTTKGRV 380

Query: 679 -------QDGRRRIVDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
                  ++   ++     +     C +     +  +  +C   EP  RP+FE +   L+
Sbjct: 381 PYPGMVNREVLDQVERGYRMPCPPECPES----LHDLMCQCWRKEPEERPTFEYLQAFLE 436

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 56/317 (17%), Positives = 104/317 (32%), Gaps = 93/317 (29%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR--LDFLSKLQHP 496
            +F  +  +G G  G+++K +   +G    I      K+    N K    +  L+KL H 
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVI------KRVKYNNEKAEREVKALAKLDHV 64

Query: 497 HLVSLLGHCIE--------SGSQDDSNTNKVFLVYEYIPNGS--------YRAHLSENCP 540
           ++V   G            S +   S T  +F+  E+   G+            L +   
Sbjct: 65  NIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDK--- 121

Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
              L+          + K V ++HS  +     NR L  +NI L + +  K+ D+G+   
Sbjct: 122 VLALEL------FEQITKGVDYIHSKKLI----NRDLKPSNIFLVDTKQVKIGDFGLVTS 171

Query: 600 MEEHEKL------------EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYN 647
           ++   K             E         YG                       E D+Y 
Sbjct: 172 LKNDGKRTRSKGTLRYMSPEQISSQD---YGK----------------------EVDLYA 206

Query: 648 FGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITN 707
            G IL E L+    T    +                 + D ++     ++  +++     
Sbjct: 207 LGLILAE-LLHVCDTAFETSKFFT------------DLRDGIISDIFDKKEKTLL----Q 249

Query: 708 KCICPEPSSRPSFEDVL 724
           K +  +P  RP+  ++L
Sbjct: 250 KLLSKKPEDRPNTSEIL 266

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 59/327 (18%), Positives = 119/327 (36%), Gaps = 104/327 (31%)

Query: 449 GEGSRGKLYKGRLENG------TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHP 496
           G+GS G +Y+G  +        T VAI+++    + +  +++ R++FL+      +    
Sbjct: 34  GQGSFGMVYEGVAKGVVKDEPETRVAIKTV---NEAA--SMRERIEFLNEASVMKEFNCH 88

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SY----RAHLSENCPENVLKWSDR 549
           H+V LLG   +             ++ E +  G   SY    R  ++ N        S  
Sbjct: 89  HVVRLLGVVSQGQP--------TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKM 140

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
           + +   +A  + +L+++     F +R L   N ++ E    K+ D+G++  + E +    
Sbjct: 141 IQMAGEIADGMAYLNAN----KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRK 196

Query: 609 KGEG--------PKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
            G+G        P++ + G  F   T+                 DV++FG       V  
Sbjct: 197 GGKGLLPVRWMSPESLKDGV-F---TT---------------YSDVWSFG-------V-- 228

Query: 660 IVTGKGEAFLLNEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSI 705
                    +L E+A+   Q                   +  P     C       +  +
Sbjct: 229 ---------VLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKP---DNCPDM----LFEL 272

Query: 706 TNKCICPEPSSRPSFEDVLWNLQYAAQ 732
              C    P  RPSF +++ +++   +
Sbjct: 273 MRMCWQYNPKMRPSFLEIISSIKEEME 299

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 65/320 (20%), Positives = 105/320 (32%), Gaps = 105/320 (32%)

Query: 449 GEGSRGKLYKGRL--------ENGTYVAIRSLTFLKKYSIQNLKVRLDFL------SKLQ 494
           G+G+  K++KG           + T V ++ L    K           F       SKL 
Sbjct: 17  GQGTFTKIFKGVRREVGDYGQLHETEVLLKVL---DKAH---RNYSESFFEAASMMSKLS 70

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           H HLV   G C+              LV E++  GS   +L +N     +    +L +  
Sbjct: 71  HKHLVLNYGVCVCGDE--------NILVQEFVKFGSLDTYLKKNKNC--INILWKLEVAK 120

Query: 555 GVAKAVHFLHSSVISGSFSNR-LTTNNILLD--------EHRIAKLSDYGISIIMEEHE- 604
            +A A+HFL  +    +  +  +   NILL              KLSD GISI +   + 
Sbjct: 121 QLAAAMHFLEEN----TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDI 176

Query: 605 -KLEAKGEGPKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT 662
            +       P+             A                D ++FG             
Sbjct: 177 LQERIPWVPPECIENPKNL---NLAT---------------DKWSFG------------- 205

Query: 663 GKGEAFLLNEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSITNK 708
                  L E+ S G +              + R ++  P      + E    + ++ N 
Sbjct: 206 -----TTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAP-----KAAE----LANLINN 251

Query: 709 CICPEPSSRPSFEDVLWNLQ 728
           C+  EP  RPSF  ++ +L 
Sbjct: 252 CMDYEPDHRPSFRAIIRDLN 271

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 69/338 (20%), Positives = 116/338 (34%), Gaps = 114/338 (33%)

Query: 443 DSLSFM---GEGSRGKLYKGRLENG------TYVAIRSLTFLKKYSIQNLKVRLDFL--- 490
             +      GEG+ GK++     N         VA+++L   K  +   L  R DF    
Sbjct: 15  RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKAL---KDPT---LAARKDFQREA 68

Query: 491 ---SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV---- 543
              + LQH H+V   G C +           + +V+EY+ +G     L  + P+ +    
Sbjct: 69  ELLTNLQHEHIVKFYGVCGDGDP--------LIMVFEYMKHGDLNKFLRAHGPDAMILVD 120

Query: 544 ---------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSD 593
                    L  S  L I   +A  + +L S      F +R L T N L+  + + K+ D
Sbjct: 121 GQPRQAKGELGLSQMLHIASQIASGMVYLASQ----HFVHRDLATRNCLVGANLLVKIGD 176

Query: 594 YGISIIMEEHEKLEAKGEG--------PKA-RYGFLFICRTSAENVVIVVDIQRTKLEDD 644
           +G+S  +   +     G          P++  Y   F   T+               E D
Sbjct: 177 FGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK-F---TT---------------ESD 217

Query: 645 VYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ--------------DGRRRIVDPVV 690
           V++FG       V           +L E+ ++G Q                 R +  P  
Sbjct: 218 VWSFG-------V-----------ILWEIFTYGKQPWFQLSNTEVIECITQGRVLERP-- 257

Query: 691 LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
              C +E    V  +   C   EP  R + +++   L 
Sbjct: 258 -RVCPKE----VYDVMLGCWQREPQQRLNIKEIYKILH 290

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 30/157 (19%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSL-------TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
           G+G  G +  G    G  VA++ +        FL + S+         +++L+H +LV L
Sbjct: 202 GKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASV---------MTQLRHSNLVQL 251

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           LG  +E           +++V EY+  GS   +L       VL     L   + V +A+ 
Sbjct: 252 LGVIVEEK-------GGLYIVTEYMAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAME 303

Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           +L  +    +F +R L   N+L+ E  +AK+SD+G++
Sbjct: 304 YLEGN----NFVHRDLAARNVLVSEDNVAKVSDFGLT 336

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 28/164 (17%)

Query: 449 GEGSRGKLYKGRLENGTY-VAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLVSL 501
           G G  G++Y+G  +  +  VA+++L   K+ +++      +FL       +++HP+LV L
Sbjct: 22  GGGQYGEVYEGVWKKYSLTVAVKTL---KEDTME----VEEFLKEAAVMKEIKHPNLVQL 74

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           LG C              +++ E++  G+   +L E   +  +     L +   ++ A+ 
Sbjct: 75  LGVCTREPP--------FYIITEFMTYGNLLDYLRECNRQE-VSAVVLLYMATQISSAME 125

Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE 604
           +L       +F +R L   N L+ E+ + K++D+G+S +M    
Sbjct: 126 YLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
           +     L     ++     +   +      L  +  L      +      G+  L  L  
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIG 67

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
           L +  N   D  P    +L+ +T L L  N LK    S+I  + ++  + +++ +++  +
Sbjct: 68  LELKDNQITDLAPL--KNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT-DV 122

Query: 207 PDMSALTSLHVLDLRENKLD--SGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLD 264
             ++ L++L VL L  N++   S L  +   L  + +     S   P     L++L  L 
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTN-LQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 265 LSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
              N +S I P  L SLPN+  +HL +N +S
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 12/193 (6%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
           +  L  L  L L    I    P  +  L+ +  L++S N L     S I+ L  ++TL +
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 114

Query: 150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
            +    D  P     LSNL VL L  NQ+     S +  +  L  +++ N ++S  L  +
Sbjct: 115 TSTQITDVTPL--AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS-DLTPL 169

Query: 210 SALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFN 268
           + L+ L  L   +NK+    PL     L+ V L  N  S   P      + L  + L+  
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227

Query: 269 DLSGIPPSVLFSL 281
            ++  P     +L
Sbjct: 228 TITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 87  VTTLTRLTTLRVLSLVSLGI--WGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRL 144
           V+ +  L +++ L L S  I    PL      LS+L++L +  N +     S ++ L  L
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITDVTPLAG----LSNLQVLYLDLNQI--TNISPLAGLTNL 153

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG 204
           Q L++      D  P    +LS LT L    N++     S +  +  L ++ + NN++S 
Sbjct: 154 QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS- 208

Query: 205 KLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI-PQQFGELAQLQHL 263
            +  ++  ++L ++ L    + +        LV   + +      I P    +       
Sbjct: 209 DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

Query: 264 DLSFNDLSGIP 274
           +L++N  S I 
Sbjct: 269 NLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 198 SNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGE 256
               ++   PD  AL +   +   ++ +   +      G+ T+       +         
Sbjct: 5   QPTAINVIFPD-PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQY 61

Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           L  L  L+L  N ++ + P  L +L  I+ L L+ N L 
Sbjct: 62  LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 63/294 (21%), Positives = 93/294 (31%), Gaps = 65/294 (22%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G GS   +YKG   E    VA        L K   Q  K   + L  LQHP++V      
Sbjct: 35  GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 94

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC--PENVLK-WSDRLAILIGVAKAVHF 562
             +          + LV E + +G+ + +L         VL+ W     IL G+     F
Sbjct: 95  ESTVKGKKC----IVLVTELMTSGTLKTYLKRFKVMKIKVLRSWC--RQILKGL----QF 144

Query: 563 LHS---SVISGSFSNRLTTNNILLDEHR-IAKLSDYGISIIMEEHEKLEAKG-------E 611
           LH+    +I       L  +NI +       K+ D G++ +          G       E
Sbjct: 145 LHTRTPPIIHRD----LKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPE 200

Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN 671
             + +Y                VD+         Y FG  +LE     + T +       
Sbjct: 201 MYEEKYDES-------------VDV---------YAFGMCMLE-----MATSEYPYSECQ 233

Query: 672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVV-SITNKCICPEPSSRPSFEDVL 724
             A         R V   V      +     V  I   CI      R S +D+L
Sbjct: 234 NAAQIY------RRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 281

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHP 496
             +  L  +GEGS GK    +  E+G    I+  +++ +     +  +  +  L+ ++HP
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS--------YRAHLSENCPENVLKWSD 548
           ++V       E+          +++V +Y   G               E   + +L W  
Sbjct: 84  NIVQYRESFEEN--------GSLYIVMDYCEGGDLFKRINAQKGVLFQE---DQILDW-- 130

Query: 549 RLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
                + +  A+  +H   I     +R + + NI L +    +L D+GI+ ++    +L
Sbjct: 131 ----FVQICLALKHVHDRKIL----HRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVEL 181

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 59/300 (19%), Positives = 117/300 (39%), Gaps = 76/300 (25%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSL--------TFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
           G+G  G+++ G     T VAI++L         FL++  +         + KL+H  LV 
Sbjct: 276 GQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV---------MKKLRHEKLVQ 326

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
           L     E           +++V EY+  GS    L     +  L+    + +   +A  +
Sbjct: 327 LYAVVSEEP---------IYIVTEYMSKGSLLDFLKGETGKY-LRLPQLVDMAAQIASGM 376

Query: 561 HFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGF 619
            ++       ++ +R L   NIL+ E+ + K++D+G++ ++E++E    +G         
Sbjct: 377 AYVERM----NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG-------AK 425

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS- 678
             I  T+ E         R  ++ DV++FG                   LL E+ + G  
Sbjct: 426 FPIKWTAPE----AALYGRFTIKSDVWSFG------------------ILLTELTTKGRV 463

Query: 679 -------QDGRRRIVDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
                  ++   ++     +     C +     +  +  +C   EP  RP+FE +   L+
Sbjct: 464 PYPGMVNREVLDQVERGYRMPCPPECPES----LHDLMCQCWRKEPEERPTFEYLQAFLE 519

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 26/183 (14%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSI-CRIAT 191
           ++PSGI      + L + +          +  L+ LT L+L  NQL+    + +   +  
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 192 LTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKG-------LVTVLLS 242
           L  + ++NN+L+  LP      LT L  L L  N+L S    +P G       L  + L+
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS----LPSGVFDRLTKLKELRLN 139

Query: 243 RNLFSGAIPQ-QFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKD 301
            N    +IP   F +L  LQ L LS N L  +P      L  +  + L  N        D
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN------QFD 192

Query: 302 LSC 304
            S 
Sbjct: 193 CSR 195

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 27/161 (16%), Positives = 68/161 (42%), Gaps = 13/161 (8%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           ++  +  +GEG    +     L +G + A++ +   ++   +  +   D      HP+++
Sbjct: 30  HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNIL 89

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR--LAILIGVA 557
            L+ +C+     +    ++ +L+  +   G+    + E   +     ++   L +L+G+ 
Sbjct: 90  RLVAYCLR----ERGAKHEAWLLLPFFKRGTLWNEI-ERLKDKGNFLTEDQILWLLLGIC 144

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           + +  +H+       ++R L   NILL +     L D G  
Sbjct: 145 RGLEAIHAKGY----AHRDLKPTNILLGDEGQPVLMDLGSM 181

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 72.2 bits (178), Expect = 5e-14
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 28/156 (17%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLVSLL 502
           G+G  G +  G    G  VA++ +   K  +         FL+      +L+H +LV LL
Sbjct: 30  GKGEFGDVMLGDY-RGNKVAVKCI---KNDATAQ-----AFLAEASVMTQLRHSNLVQLL 80

Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
           G  +E           +++V EY+  GS   +L      +VL     L   + V +A+ +
Sbjct: 81  GVIVEEK-------GGLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEY 132

Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           L  +    +F +R L   N+L+ E  +AK+SD+G++
Sbjct: 133 LEGN----NFVHRDLAARNVLVSEDNVAKVSDFGLT 164

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.0 bits (179), Expect = 6e-14
 Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 28/182 (15%)

Query: 118 SSLELLDMSSNFLFGAIPSGI--SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
           S   LLD+S N L   + +    +RL  L +L +  N  +    + +  + NL  L L S
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 176 NQLKGQFPSSICR-IATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLM 232
           N L       +   +  L  + + NN +   +       +  L  L L +N++       
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR----- 150

Query: 233 PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS--YLHLA 290
                       L          +L +L  LDLS N L  +P + L  LP      L+L 
Sbjct: 151 --------FPVELIKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 291 SN 292
           +N
Sbjct: 198 NN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 32/173 (18%), Positives = 51/173 (29%), Gaps = 52/173 (30%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWW-DSLSNLTVLSLKSNQLKGQFPSSICRIAT 191
            +P  +        L +  N       +W    L+NL  L L  N L             
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN------------ 77

Query: 192 LTDIAMSNNELSGKLPDM--SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGA 249
                         +       + +L  LDL  N L +             L   LFS  
Sbjct: 78  -------------FISSEAFVPVPNLRYLDLSSNHLHT-------------LDEFLFSD- 110

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
                  L  L+ L L  N +  +  +    +  +  L+L+ N +S   P +L
Sbjct: 111 -------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKI-HRLSSLELLDMSSNFLFGAIPSGI----SRLVR 143
             + L  L VL L +  I   +       ++ L+ L +S N +    P  +    ++L +
Sbjct: 107 LFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPK 164

Query: 144 LQTLTMDTNFFDDNVPDWWDSLSNLTV--LSLKSNQL 178
           L  L + +N            L       L L +N L
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.6 bits (181), Expect = 7e-14
 Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 20/208 (9%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
           +  +L TL  L   +  I   +   I +L+ L  L  +SN +   +   +S+   L  L 
Sbjct: 37  SEEQLATLTSLDCHNSSI-TDMTG-IEKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLA 91

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
            D+N    N+      L+ LT L+  +N+L  +   S      LT +  + N L+ ++ D
Sbjct: 92  CDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-KLDVSQN--PLLTYLNCARNTLT-EI-D 143

Query: 209 MSALTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSF 267
           +S  T L  LD   NK  + L + P   L T+  S N  +  +     +   L  L+   
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDT 200

Query: 268 NDLSGIPPSVLFSLPNISYLHLASNMLS 295
           N+++ +  +       +++L  +SN L+
Sbjct: 201 NNITKLDLN---QNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 9e-12
 Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 17/208 (8%)

Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           +++   L  LD SSN L   I   ++ L +L       N   + +     +LS LT L  
Sbjct: 208 LNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLTE-LDVS--TLSKLTTLHC 261

Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL-M 232
               L       +     L            K  D++  T L++LD +   +   L L  
Sbjct: 262 IQTDLLE---IDLTHNTQLIYFQAEGCRKI-KELDVTHNTQLYLLDCQAAGITE-LDLSQ 316

Query: 233 PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              LV + L+    +  +        +L+ L      +       +  +P ++    A  
Sbjct: 317 NPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEG 371

Query: 293 MLSGTLPKDLSCGSKLDSISDKRVVKFG 320
                  + L+  S   ++S   + +FG
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 14/148 (9%)

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
             T  F+D  PD      N       + +++     S  ++ATLT +   N+ ++  +  
Sbjct: 6   GQTQSFNDWFPD-----DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG 59

Query: 209 MSALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSF 267
           +  LT L  L    N + + L L     L  +    N  +  +      L +L +L+   
Sbjct: 60  IEKLTGLTKLICTSNNITT-LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDT 115

Query: 268 NDLSGIPPSVLFSLPNISYLHLASNMLS 295
           N L+ +  S     P ++YL+ A N L+
Sbjct: 116 NKLTKLDVS---QNPLLTYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 21/207 (10%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
           L++ T L  L+  S  +   L   +  L+ L  L+  +N L       +S+   L  L  
Sbjct: 81  LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNC 134

Query: 150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
             N   +         + LT L    N+        +     LT +  S N+++    D+
Sbjct: 135 ARNTLTEID---VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITEL--DV 187

Query: 210 SALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFN 268
           S    L+ L+   N +   L L     L  +  S N  +  I      L QL + D S N
Sbjct: 188 SQNKLLNRLNCDTNNITK-LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVN 243

Query: 269 DLSGIPPSVLFSLPNISYLHLASNMLS 295
            L+ +  S   +L  ++ LH     L 
Sbjct: 244 PLTELDVS---TLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 29/200 (14%), Positives = 71/200 (35%), Gaps = 23/200 (11%)

Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
           + +   L  L+  +N +   +   +++ ++L  L   +N   + +      L+ LT    
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240

Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL-M 232
             N L  +   S    + LT +     +L  ++ D++  T L        +    L +  
Sbjct: 241 SVNPLT-ELDVSTL--SKLTTLHCIQTDLL-EI-DLTHNTQLIYFQAEGCRKIKELDVTH 295

Query: 233 PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              L  +       +  +     +  +L +L L+  +L+ +  S       +  L   + 
Sbjct: 296 NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTELDVS---HNTKLKSLSCVNA 349

Query: 293 MLSGTLPKDLSCGSKLDSIS 312
            +      D S   K+ +++
Sbjct: 350 HIQ-----DFSSVGKIPALN 364

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 72.7 bits (179), Expect = 7e-14
 Identities = 76/332 (22%), Positives = 115/332 (34%), Gaps = 110/332 (33%)

Query: 449 GEGSRGKLYKGRLENG------TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHP 496
           GEG+ GK++     N         VA+++L   K+ S      R DF         LQH 
Sbjct: 50  GEGAFGKVFLAECHNLLPEQDKMLVAVKAL---KEAS---ESARQDFQREAELLTMLQHQ 103

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV------------L 544
           H+V   G C E           + +V+EY+ +G     L  + P+              L
Sbjct: 104 HIVRFFGVCTEGRP--------LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPL 155

Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
                LA+   VA  + +L        F +R L T N L+ +  + K+ D+G+S  +   
Sbjct: 156 GLGQLLAVASQVAAGMVYLAGL----HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST 211

Query: 604 EKLEAKGEG--------PKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           +     G          P++  Y   F   T+               E DV++FG     
Sbjct: 212 DYYRVGGRTMLPIRWMPPESILYRK-F---TT---------------ESDVWSFG----- 247

Query: 655 SLVGPIVTGKGEAFLLNEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLS 700
             V           +L E+ ++G Q                 R +  P     C  E   
Sbjct: 248 --V-----------VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERP---RACPPE--- 288

Query: 701 IVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ 732
            V +I   C   EP  R S +DV   LQ  AQ
Sbjct: 289 -VYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 71.5 bits (176), Expect = 9e-14
 Identities = 56/339 (16%), Positives = 117/339 (34%), Gaps = 103/339 (30%)

Query: 431 YLEELKEATNNFDSLS-----FMGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQ 481
            L E+K+     + +       +G+G  G +Y G      +N    AI+SL    + +  
Sbjct: 7   LLAEVKDVLIPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSL---SRIT-- 61

Query: 482 NLKVRLDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL 535
            ++    FL        L HP++++L+G  +              ++  Y+ +G     +
Sbjct: 62  EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGL-------PHVLLPYMCHGDLLQFI 114

Query: 536 SENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDY 594
                       D ++  + VA+ + +L        F +R L   N +LDE    K++D+
Sbjct: 115 RSPQRN--PTVKDLISFGLQVARGMEYLAEQ----KFVHRDLAARNCMLDESFTVKVADF 168

Query: 595 GISIIMEEHE--KLEAKGEG--------PKA-RYGFLFICRTSAENVVIVVDIQRTKLED 643
           G++  + + E   ++              ++ +    F   T+                 
Sbjct: 169 GLARDILDREYYSVQQHRHARLPVKWTALESLQTY-RF---TTKS--------------- 209

Query: 644 DVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ--------------DGRRRIVDPV 689
           DV++FG                   LL E+ + G+                  RR+  P 
Sbjct: 210 DVWSFG------------------VLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQP- 250

Query: 690 VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
               C       +  +  +C   +P+ RP+F  ++  ++
Sbjct: 251 --EYCPDS----LYQVMQQCWEADPAVRPTFRVLVGEVE 283

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 58/306 (18%), Positives = 113/306 (36%), Gaps = 48/306 (15%)

Query: 439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH 497
            ++F+ ++ +G+G+ G++ K R   +  Y AI+ +    +  +  +   +  L+ L H +
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIR-HTEEKLSTILSEVMLLASLNHQY 63

Query: 498 LVSLLG-----HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
           +V                      + +F+  EY  NG+    +     EN+ +  D    
Sbjct: 64  VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHS---ENLNQQRDEYWR 120

Query: 553 LIG-VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
           L   + +A+ ++HS  I     +R L   NI +DE R  K+ D+G++  +     +    
Sbjct: 121 LFRQILEALSYIHSQGII----HRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176

Query: 611 EGPKARYGFLFICRTSA---------ENVVIVVDIQRTKLED---DVYNFGFILLESLVG 658
                         TSA         E V     +  T   +   D+Y+ G I  E ++ 
Sbjct: 177 SQNLPGSSDN---LTSAIGTAMYVATE-V-----LDGTGHYNEKIDMYSLGIIFFE-MIY 226

Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
           P  TG     +L ++     +        P       +    I+       I  +P+ RP
Sbjct: 227 PFSTGMERVNILKKL-----RSVSIEF-PPDFDDNKMKVEKKII----RLLIDHDPNKRP 276

Query: 719 SFEDVL 724
               +L
Sbjct: 277 GARTLL 282

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 60/335 (17%), Positives = 105/335 (31%), Gaps = 112/335 (33%)

Query: 449 GEGSRGKLYKGRLENG---TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLV 499
           G G+ G + KG  +       VA++ L    K    +  ++ + L+      +L +P++V
Sbjct: 26  GSGNFGTVKKGYYQMKKVVKTVAVKIL----KNEANDPALKDELLAEANVMQQLDNPYIV 81

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            ++G C               LV E    G    +L +N     +K  + + ++  V+  
Sbjct: 82  RMIGICEAE---------SWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMG 129

Query: 560 ------VHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
                  +F+H          R L   N+LL     AK+SD+G+S  +   E        
Sbjct: 130 MKYLEESNFVH----------RDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTH 179

Query: 613 PK----------ARYG-FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV 661
            K            Y  F     +S                 DV++FG            
Sbjct: 180 GKWPVKWYAPECINYYKF-----SSKS---------------DVWSFG------------ 207

Query: 662 TGKGEAFLLNEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSITN 707
                  L+ E  S+G +              +   R+  P     C +E    +  + N
Sbjct: 208 ------VLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCP---AGCPRE----MYDLMN 254

Query: 708 KCICPEPSSRPSFEDVLWNLQYAAQVQATADADQK 742
            C   +  +RP F  V   L+              
Sbjct: 255 LCWTYDVENRPGFAAVELRLRNYYYDVVNEGHHHH 289

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 61/325 (18%), Positives = 107/325 (32%), Gaps = 100/325 (30%)

Query: 449 GEGSRGKLYKGRLENG------TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHP 496
           G G+ G++Y+G++           VA+++L    +    + +  LDFL       K  H 
Sbjct: 39  GHGAFGEVYEGQVSGMPNDPSPLQVAVKTL---PEVC--SEQDELDFLMEALIISKFNHQ 93

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SY-RAHLSENCPENVLKWSDRLAI 552
           ++V  +G  ++S           F++ E +  G   S+ R         + L   D L +
Sbjct: 94  NIVRCIGVSLQSLP--------RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHV 145

Query: 553 LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLD---EHRIAKLSDYGISIIMEEHEKLEA 608
              +A    +L  +     F +R +   N LL      R+AK+ D+G++  +        
Sbjct: 146 ARDIACGCQYLEEN----HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRK 201

Query: 609 KGEGPKARYGFLFICRTSAENVVIVVDIQRTKLED-------DVYNFGFILLESLVGPIV 661
            G         L +     E              +       D ++FG            
Sbjct: 202 GGC------AMLPVKWMPPEA-----------FMEGIFTSKTDTWSFG------------ 232

Query: 662 TGKGEAFLLNEMASFGSQ--------------DGRRRIVDPVVLTTCSQESLSIVVSITN 707
                  LL E+ S G                    R+  P     C       V  I  
Sbjct: 233 ------VLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPP---KNCPGP----VYRIMT 279

Query: 708 KCICPEPSSRPSFEDVLWNLQYAAQ 732
           +C   +P  RP+F  +L  ++Y  Q
Sbjct: 280 QCWQHQPEDRPNFAIILERIEYCTQ 304

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 72.7 bits (178), Expect = 2e-13
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 30/176 (17%)

Query: 449 GEGSRGKLYKGRLENG---TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPHLV 499
           G G+ G + +G          VAI+ L   K+ + +      + +       +L +P++V
Sbjct: 345 GCGNFGSVRQGVYRMRKKQIDVAIKVL---KQGTEK--ADTEEMMREAQIMHQLDNPYIV 399

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L+G C             + LV E    G     L     E  +  S+   +L  V+  
Sbjct: 400 RLIGVCQAE---------ALMLVMEMAGGGPLHKFLVGKREE--IPVSNVAELLHQVSMG 448

Query: 560 VHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
           + +L       +F +R L   N+LL     AK+SD+G+S  +   +         K
Sbjct: 449 MKYLEEK----NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGK 500

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 23/230 (10%)

Query: 71  PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL 130
           P+ ++T++    I   + +          +L    +   +    + L+S++ +  +++ +
Sbjct: 2   PLGSETITVPTPIKQ-IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 58

Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA 190
             ++  GI  L  +  L ++ N   D  P    +L NL  L L  N++       +  + 
Sbjct: 59  -KSV-QGIQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKV-----KDLSSLK 109

Query: 191 TLTDI---AMSNNELSGKLPDMSALTSLHVLDLRENKLD--SGLPLMPKGLVTVLLSRNL 245
            L  +   ++ +N +S  +  +  L  L  L L  NK+   + L  + K L T+ L  N 
Sbjct: 110 DLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQ 167

Query: 246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            S  +P     L +LQ+L LS N +S +    L  L N+  L L S    
Sbjct: 168 ISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 38/183 (20%), Positives = 77/183 (42%), Gaps = 16/183 (8%)

Query: 90  LTRLTTLRVLSLVSLGI--WGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL 147
           L  L  L  L L    +     L D    L  L+ L +  N +  +  +G+  L +L++L
Sbjct: 86  LANLKNLGWLFLDENKVKDLSSLKD----LKKLKSLSLEHNGI--SDINGLVHLPQLESL 139

Query: 148 TMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP 207
            +  N   D        L+ L  LSL+ NQ+       +  +  L ++ +S N +S  L 
Sbjct: 140 YLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-DLR 194

Query: 208 DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI--PQQFGELAQLQHLDL 265
            ++ L +L VL+L   +  +  P+  +  + V  +     G++  P+   +    +  ++
Sbjct: 195 ALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

Query: 266 SFN 268
            ++
Sbjct: 254 KWH 256

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 44/190 (23%)

Query: 115 HRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN-------FFDDNVPDWWDSLSN 167
           + L+S++ +  +++ +  ++  GI  L  ++ L +  N                   L+N
Sbjct: 38  NELNSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGNKLHDISAL---------KELTN 86

Query: 168 LTVLSLKSNQLKGQFPSSI-CRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENK 224
           LT L L  NQL+   P+ +  ++  L ++ +  N+L   LPD     LT+L  L+L  N+
Sbjct: 87  LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144

Query: 225 LDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNI 284
           L S    +PKG+                 F +L  L  LDLS+N L  +P  V   L  +
Sbjct: 145 LQS----LPKGV-----------------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183

Query: 285 SYLHLASNML 294
             L L  N L
Sbjct: 184 KDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 11/171 (6%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
             P             +      D V    + L+++  +   ++ +  +    I  +  +
Sbjct: 12  IFPDDAF--AETIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDI--KSVQGIQYLPNV 65

Query: 193 TDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS---GLPLMPKGLVTVLLSRNLFSGA 249
             +A+  N+L   +  +  LT+L  L L  N+L S   G+      L  ++L  N     
Sbjct: 66  RYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
               F +L  L +L+L+ N L  +P  V   L N++ L L+ N L  +LP+
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE 174

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 26/162 (16%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
            IP+ +     +  + ++ N      P  +     L  + L +NQ+    P +   + +L
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 193 TDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI 250
             + +  N+++ +LP      L SL +L L  NK++     +                  
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC----LRVDA-------------- 123

Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              F +L  L  L L  N L  I       L  I  +HLA N
Sbjct: 124 ---FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 25/138 (18%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM--SALTSLHVLDLREN 223
             +T + L+ N +K   P +      L  I +SNN++S +L       L SL+ L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 224 KLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN 283
           K+   LP                       F  L  LQ L L+ N ++ +       L N
Sbjct: 91  KITE-LP--------------------KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 284 ISYLHLASNMLSGTLPKD 301
           ++ L L  N L  T+ K 
Sbjct: 130 LNLLSLYDNKLQ-TIAKG 146

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 228 GLPLMPKGL---VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN 283
           GL  +P  L   +T + L +N      P  F    +L+ +DLS N +S + P     L +
Sbjct: 22  GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 284 ISYLHLASNMLSGTLPKDL 302
           ++ L L  N ++  LPK L
Sbjct: 82  LNSLVLYGNKIT-ELPKSL 99

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 90  LTRLTTLRVLS---LVSLGIWGPLPDKI-HRLSSLELLDMSSNFLFGAIPSGI-SRLVRL 144
           L  L +L  L    +  L      P  +   L SL+LL +++N +   +       L  L
Sbjct: 79  LRSLNSLV-LYGNKITEL------PKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNL 130

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN 176
             L++  N         +  L  +  + L  N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 3e-13
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 15/193 (7%)

Query: 118 SSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVP-DWWDSLSNLTVLSL-K 174
            +   L      L   I  G  S    L+ + +  N   + +  D + +L  L  + + K
Sbjct: 30  RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 175 SNQLKGQFPSSICR-IATLTDIAMSNNELSGKLPDMS--ALTSLHVLDLRENKLDSGLPL 231
           +N L         + +  L  + +SN  +   LPD+         +LD+++N     +  
Sbjct: 89  ANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 232 -----MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISY 286
                +    V + L++N         F      +      N+L  +P  V         
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 287 LHLASNMLSGTLP 299
           L ++   +  +LP
Sbjct: 207 LDISRTRIH-SLP 218

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 7e-13
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 18/212 (8%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTM-DT 151
                L  V   +             LE +++S N +   I + + S L +L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT-LTDIAMSNNELSGKLPDMS 210
           N      P+ + +L NL  L + +  +K   P      +     + + +N     +   S
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 211 --ALTS-LHVLDLRENKLDS-------GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQL 260
              L+    +L L +N +         G  L        L   N         F   +  
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQL----DELNLSDNNNLEELPNDVFHGASGP 204

Query: 261 QHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
             LD+S   +  +P   L +L  +      + 
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 24/143 (16%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM--SALTSLHVLDL-RE 222
            N   L     +L+     +      L  I +S N++   +     S L  LH + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 223 NKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP 282
           N L               ++   F          L  LQ+L +S   +  +P        
Sbjct: 90  NNLLY-------------INPEAFQN--------LPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 283 NISYLHLASNMLSGTLPKDLSCG 305
               L +  N+   T+ ++   G
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVG 151

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 22/190 (11%)

Query: 90  LTRLTTLRVL---SLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQ 145
           L +L  +R+    +L+ +      P+    L +L+ L +S+  +   +P       ++  
Sbjct: 78  LPKLHEIRIEKANNLLYIN-----PEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKV 131

Query: 146 TLTMDTNFFDDNVPDWWDSLSNLTV----LSLKSNQLKGQFPSSICRIATLTDIA-MSNN 200
            L +  N     +    +S   L+     L L  N ++ +  +S      L ++    NN
Sbjct: 132 LLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188

Query: 201 ELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELA 258
            L  +LP+      +   +LD+   ++ S      + L   L +R+ ++        +L 
Sbjct: 189 NLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENL-KKLRARSTYNLKKLPTLEKLV 246

Query: 259 QLQHLDLSFN 268
            L    L++ 
Sbjct: 247 ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 214 SLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFND-LS 271
           S  V   +E+K+   +P  +P+  + +              F     L+ +++S ND L 
Sbjct: 10  SNRVFLCQESKVTE-IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 272 GIPPSVLFSLPNISYLHLA-SNMLSGTLPKDL 302
            I   V  +LP +  + +  +N L   +  + 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLL-YINPEA 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 18/184 (9%)

Query: 116 RLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDD--NVPDWWDSLSNLTVLSL 173
             +     ++    +  A+    + L  +  +  + +       +      L N+T L L
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGI----QYLPNVTKLFL 72

Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLD--SGLPL 231
             N+L    P  +  +  L  + +  N++   L  +  L  L  L L  N +   +GL  
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGISDINGLVH 129

Query: 232 MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLAS 291
           +P+ L ++ L  N  +         L +L  L L  N +S I P  L  L  +  L+L+ 
Sbjct: 130 LPQ-LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184

Query: 292 NMLS 295
           N +S
Sbjct: 185 NHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 1e-12
 Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 22/214 (10%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
           +            +L    +   +    + L+S++ +  +++ +      GI  L  +  
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTK 69

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAM---SNNELS 203
           L ++ N   D  P    +L NL  L L  N++       +  +  L  +      +N +S
Sbjct: 70  LFLNGNKLTDIKPL--TNLKNLGWLFLDENKI-----KDLSSLKDLKKLKSLSLEHNGIS 122

Query: 204 GKLPDMSALTSLHVLDLRENKLD--SGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQ 261
             +  +  L  L  L L  NK+   + L  + K L T+ L  N  S  +P     L +LQ
Sbjct: 123 -DINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVP--LAGLTKLQ 178

Query: 262 HLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           +L LS N +S +    L  L N+  L L S    
Sbjct: 179 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 13/161 (8%)

Query: 87  VTTLTRLTTLRVLSLVSLGIW--GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRL 144
           +  LT L  L  L L    I     L D    L  L+ L +  N +  +  +G+  L +L
Sbjct: 80  IKPLTNLKNLGWLFLDENKIKDLSSLKD----LKKLKSLSLEHNGI--SDINGLVHLPQL 133

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG 204
           ++L +  N   D        L+ L  LSL+ NQ+       +  +  L ++ +S N +S 
Sbjct: 134 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS- 188

Query: 205 KLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNL 245
            L  ++ L +L VL+L   +  +        LV     +N 
Sbjct: 189 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 192 LTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAI 250
           + +    +  +  ++    A       +L++  +   +       +  ++ + +      
Sbjct: 1   MGETITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 59

Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
                 L  +  L L+ N L+ I P  L +L N+ +L L  N + 
Sbjct: 60  G--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 59/322 (18%), Positives = 107/322 (33%), Gaps = 94/322 (29%)

Query: 449 GEGSRGKLYKGRLENG------TYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHP 496
           G G+ G++Y+G++           VA+++L    +    + +  LDFL       K  H 
Sbjct: 80  GHGAFGEVYEGQVSGMPNDPSPLQVAVKTL---PEVC--SEQDELDFLMEALIISKFNHQ 134

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SY-RAHLSENCPENVLKWSDRLAI 552
           ++V  +G  ++S           F++ E +  G   S+ R         + L   D L +
Sbjct: 135 NIVRCIGVSLQSLP--------RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHV 186

Query: 553 LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLD---EHRIAKLSDYGISIIMEEHEKLEA 608
              +A    +L  +     F +R +   N LL      R+AK+ D+G++  +        
Sbjct: 187 ARDIACGCQYLEEN----HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRK 242

Query: 609 KGEGPKARYGFLFICRTSAENVVIVVDIQRTKLED-------DVYNFGFILLESLVGPIV 661
            G         L +     E              +       D ++FG            
Sbjct: 243 GGC------AMLPVKWMPPEA-----------FMEGIFTSKTDTWSFG------------ 273

Query: 662 TGKGEAFLLNEMASFGSQ--------DGRRRIVDPVVL---TTCSQESLSIVVSITNKCI 710
                  LL E+ S G          +    +     +     C       V  I  +C 
Sbjct: 274 ------VLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGP----VYRIMTQCW 323

Query: 711 CPEPSSRPSFEDVLWNLQYAAQ 732
             +P  RP+F  +L  ++Y  Q
Sbjct: 324 QHQPEDRPNFAIILERIEYCTQ 345

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPD-WWDSLSNLTVLSLKSNQLKGQFPSSICRIAT 191
            IP  I        L ++ N F        +  L  L  ++  +N++      +    + 
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 192 LTDIAMSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI 250
           + +I +++N L      M   L SL  L LR N++      +                  
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC----VGNDS-------------- 124

Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
              F  L+ ++ L L  N ++ + P    +L ++S L+L +N
Sbjct: 125 ---FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 26/139 (18%)

Query: 166 SNLTVLSLKSNQLKGQFPSSI-CRIATLTDIAMSNNELSGKLPDM--SALTSLHVLDLRE 222
                L L +N+      + I  ++  L  I  SNN+++  + +      + ++ + L  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 223 NKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP 282
           N+L++             +   +F G        L  L+ L L  N ++ +       L 
Sbjct: 91  NRLEN-------------VQHKMFKG--------LESLKTLMLRSNRITCVGNDSFIGLS 129

Query: 283 NISYLHLASNMLSGTLPKD 301
           ++  L L  N ++ T+   
Sbjct: 130 SVRLLSLYDNQIT-TVAPG 147

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 90  LTRLTTLRVLS---LVSLGIWGPLPDKI-HRLSSLELLDMSSNFLFGAIPSGI-SRLVRL 144
            + +  +  L+   L ++        K+   L SL+ L + SN +   + +     L  +
Sbjct: 80  ASGVNEIL-LTSNRLENV------QHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSV 131

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL 178
           + L++  N      P  +D+L +L+ L+L +N  
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 69.6 bits (171), Expect = 6e-13
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 53/179 (29%)

Query: 449 GEGSRGKLYKGRLENG---TYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-------HPHL 498
           GEG+ G++ K R++        AI+ +   K+Y+  +     DF  +L+       HP++
Sbjct: 34  GEGNFGQVLKARIKKDGLRMDAAIKRM---KEYA--SKDDHRDFAGELEVLCKLGHHPNI 88

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-------------SENCPENVLK 545
           ++LLG C   G         ++L  EY P+G+    L               N   + L 
Sbjct: 89  INLLGACEHRGY--------LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 140

Query: 546 WSDRLAILIGVAK------AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
               L     VA+         F+H          R L   NIL+ E+ +AK++D+G+S
Sbjct: 141 SQQLLHFAADVARGMDYLSQKQFIH----------RDLAARNILVGENYVAKIADFGLS 189

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 36/185 (19%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHP 496
            +++ L  +G GS G+  K R   +G  +  +      + +   Q L   ++ L +L+HP
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG----------SYRAHLSENCPENVLKW 546
           ++V      I      D     +++V EY   G            R +L E   E VL+ 
Sbjct: 66  NIVRYYDRII------DRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDE---EFVLRV 116

Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYGISIIME 601
                 +  +  A+   H         +      L   N+ LD  +  KL D+G++ I+ 
Sbjct: 117 ------MTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN 167

Query: 602 EHEKL 606
                
Sbjct: 168 HDTSF 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 28/181 (15%), Positives = 69/181 (38%), Gaps = 29/181 (16%)

Query: 117 LSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN 176
           ++SL  + +++  +     +GI     ++ LT++     +  P     LSNL  L +   
Sbjct: 43  MNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 177 QLKGQFPSSICRIATLTDIAMSNNELSG-KLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
            +      ++  + +LT + +S++      L  ++ L  ++ +DL  N   + +      
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI------ 152

Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
                                L +L+ L++ F+ +       +   P ++ L+  S  + 
Sbjct: 153 ----------------MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

Query: 296 G 296
           G
Sbjct: 195 G 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 24/185 (12%), Positives = 62/185 (33%), Gaps = 27/185 (14%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
           T  ++ +L  ++L ++ +       I    +++ L +++        + IS L  L+ L 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLR 94

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
           +       +       L++LT+L +  +       + I  +  +  I +S N     +  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 209 MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFN 268
           +  L  L  L+++ + +     +                        +  +L  L     
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRGI-----------------------EDFPKLNQLYAFSQ 191

Query: 269 DLSGI 273
            + G 
Sbjct: 192 TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG 204
           +   +  +  + N+PD   +        L  +        +  ++ +LT I ++N  ++ 
Sbjct: 4   EQTGLKASQDNVNIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT- 57

Query: 205 KLPDMSALTSLHVLDLRENKLD--SGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQH 262
            L  +    ++  L +        + +  +   L  + +     +         L  L  
Sbjct: 58  DLTGIEYAHNIKDLTINNIHATNYNPISGLSN-LERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 263 LDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
           LD+S +       + + +LP ++ + L+ N  
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
              ++ L+ L  L ++   +       +  L+SL LLD+S +    +I + I+ L ++ +
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG 204
           + +  N    ++     +L  L  L+++ + +       I     L  +   +  + G
Sbjct: 141 IDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 70.5 bits (172), Expect = 1e-12
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 18/168 (10%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRL----DFLSKLQHPHLVSLLG 503
           G G  G + +    + G  VAI+     ++      + R       + KL HP++VS   
Sbjct: 23  GTGGFGYVLRWIHQDTGEQVAIKQC---RQELSPKNRERWCLEIQIMKKLNHPNVVSA-- 77

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL 563
             +  G Q  +  +   L  EY   G  R +L++      LK      +L  ++ A+ +L
Sbjct: 78  REVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYL 137

Query: 564 HSSVISGSFSNR-LTTNNILLD---EHRIAKLSDYGISIIMEEHEKLE 607
           H + I     +R L   NI+L    +  I K+ D G +  +++ E   
Sbjct: 138 HENRI----IHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCT 181

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 26/172 (15%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
            +F+    +G+G  G +Y  R  ++   +A++ L      K      L+  ++  S L+H
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA--IL 553
           P+++ L G+       D     +V+L+ EY P G+    L +       K+ ++     +
Sbjct: 69  PNILRLYGYF-----HDA---TRVYLILEYAPLGTVYRELQKLS-----KFDEQRTATYI 115

Query: 554 IGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
             +A A+ + HS  VI     +R +   N+LL      K++D+G S+     
Sbjct: 116 TELANALSYCHSKRVI-----HRDIKPENLLLGSAGELKIADFGWSVHAPSS 162

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 23/169 (13%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRL----DFLSKLQHPHLVSLLG 503
           G+G+   +++GR  + G   AI+        S            + L KL H ++V L  
Sbjct: 18  GQGATANVFRGRHKKTGDLFAIK---VFNNISFLRPVDVQMREFEVLKKLNHKNIVKLF- 73

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL 563
              E     ++ T    L+ E+ P GS    L E      L  S+ L +L  V   ++ L
Sbjct: 74  AIEE-----ETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 564 HSSVISGSFSNR-LTTNNILL----DEHRIAKLSDYGISIIMEEHEKLE 607
             + I     +R +   NI+     D   + KL+D+G +  +E+ E+  
Sbjct: 129 RENGI----VHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFV 173

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 34/175 (19%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSIC-RIAT 191
           ++P+GI    +   L ++TN         +D L++LT L L  N+L+   P+ +  ++ +
Sbjct: 21  SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 192 LTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGA 249
           LT + +S N+L   LP+     LT L  L L  N+L S    +P G+             
Sbjct: 78  LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS----LPDGV------------- 119

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC 304
               F +L QL+ L L  N L  +P  V   L ++ Y+ L  N      P D +C
Sbjct: 120 ----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN------PWDCTC 164

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 219 DLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVL 278
           +       S    +P     + L  N         F EL  L  L L  N L  +P  V 
Sbjct: 13  ECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72

Query: 279 FSLPNISYLHLASNMLSGTLP 299
             L +++YL+L++N L  +LP
Sbjct: 73  NKLTSLTYLNLSTNQLQ-SLP 92

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 6/167 (3%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCI 506
            EG    +Y+ + + +G   A++ L   ++   + +   + F+ KL  HP++V       
Sbjct: 37  AEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAAS 96

Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
               + D+   +  L+ E    G     L +      L     L I     +AV  +H  
Sbjct: 97  IGKEESDTGQAEFLLLTEL-CKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ 155

Query: 567 VISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
                  +R L   N+LL      KL D+G +  +  +       + 
Sbjct: 156 --KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQR 200

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 23/169 (13%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRL----DFLSKLQHPHLVSLLG 503
           G+G+   +++GR  + G   AI+        S            + L KL H ++V L  
Sbjct: 18  GQGATANVFRGRHKKTGDLFAIK---VFNNISFLRPVDVQMREFEVLKKLNHKNIVKLF- 73

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL 563
              E     ++ T    L+ E+ P GS    L E      L  S+ L +L  V   ++ L
Sbjct: 74  AIEE-----ETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 564 HSSVISGSFSNR-LTTNNILL----DEHRIAKLSDYGISIIMEEHEKLE 607
             + I     +R +   NI+     D   + KL+D+G +  +E+ E+  
Sbjct: 129 RENGI----VHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFV 173

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 25/216 (11%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDT 151
             + + L L+   +          L ++  + +S +     + S     L ++  + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 152 NFFDDNVP-DWWDSLSNLTVLSLKSNQLKGQFP--SSICRIATLTDIAMSNNELSGKLPD 208
                 +  D    L  L  L + +  LK  FP  + +        + +++N     +P 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 209 MS--ALTS-LHVLDLRENKLDS-------GLPLMPKGLVTVLLSRNLFSGAIPQQ-FGEL 257
            +   L +    L L  N   S       G  L       V L++N +   I +  FG +
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL-----DAVYLNKNKYLTVIDKDAFGGV 203

Query: 258 AQ-LQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
                 LD+S   ++ +P   L  L     L   + 
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKE---LIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 183 PSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS-------GLPLMPKG 235
            S  C      D  ++  ++  ++P +    S   L L E  L +        LP     
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQ-RIPSLP--PSTQTLKLIETHLRTIPSHAFSNLP----N 56

Query: 236 LVTVLLSRNLFSGAIPQQ-FGELAQLQHLDLSFN-DLSGIPPSVLFSLPNISYLHLASNM 293
           +  + +S ++    +    F  L+++ H+++    +L+ I P  L  LP + +L + +  
Sbjct: 57  ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116

Query: 294 LSGTLPKDLSCGS 306
           L    P      S
Sbjct: 117 LK-MFPDLTKVYS 128

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 23/141 (16%)

Query: 165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM--SALTSLHVLDLRE 222
             +   L L    L+     +   +  ++ I +S +    +L       L+ +  +++R 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 223 NKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPP-SVLFSL 281
            +  + +                     P    EL  L+ L +    L   P  + ++S 
Sbjct: 90  TRNLTYID--------------------PDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 282 PNISYLHLASNMLSGTLPKDL 302
                L +  N    ++P + 
Sbjct: 130 DIFFILEITDNPYMTSIPVNA 150

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 47/175 (26%), Positives = 66/175 (37%), Gaps = 35/175 (20%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSIC-RIAT 191
           ++P+GI      Q L +  N      P  +DSL NL  L L SNQL    P  +   +  
Sbjct: 33  SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 192 LTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGA 249
           LT + +  N+L+  LP      L  L  L +  NKL                        
Sbjct: 90  LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE---------------------- 126

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC 304
           +P+    L  L HL L  N L  IP      L ++++ +L  N      P D  C
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN------PWDCEC 175

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 65.7 bits (161), Expect = 8e-12
 Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 32/175 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR------LDFLSK 492
           ++FD    +G+G  G +Y  R  +N   +A++    L K  ++   V       ++  S 
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALK---VLFKSQLEKEGVEHQLRREIEIQSH 70

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
           L+HP+++ +  +       D     +++L+ E+ P G     L ++      ++ ++ + 
Sbjct: 71  LRHPNILRMYNYF-----HDRK---RIYLMLEFAPRGELYKELQKHG-----RFDEQRSA 117

Query: 553 LIG--VAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
                +A A+H+ H   VI     +R +   N+L+      K++D+G S+     
Sbjct: 118 TFMEELADALHYCHERKVI-----HRDIKPENLLMGYKGELKIADFGWSVHAPSL 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 9/160 (5%)

Query: 136 SGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDI 195
                L       +      D V      LS +   +  ++ ++    + +     L ++
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS--LAGMQFFTNLKEL 68

Query: 196 AMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFG 255
            +S+N++S  L  +  LT L  L +  N+L +   +    L  + L  N           
Sbjct: 69  HLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDS--LI 125

Query: 256 ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            L  L+ L +  N L  I    L  L  +  L L  N ++
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 39/211 (18%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
           V     L      +L    +   +      LS ++  +  ++ +     +G+     L+ 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKE 67

Query: 147 LTMDTNFFDD--NVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG 204
           L +  N   D   +      L+ L  LS+  N+LK            L+ + + NNEL  
Sbjct: 68  LHLSHNQISDLSPL----KDLTKLEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELR- 119

Query: 205 KLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLD 264
               +  L +L +L +R NKL S + L                       G L++L+ LD
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVML-----------------------GFLSKLEVLD 156

Query: 265 LSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           L  N+++      L  L  ++++ L      
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 26/228 (11%)

Query: 385 QEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDS 444
                    +         +      R    +  LGT       +   E +      +  
Sbjct: 1   HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISVKGRIYSI 60

Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHP--HLVS 500
           L  +G G   K+++   E     AI+  +L      ++ + +  + +L+KLQ     ++ 
Sbjct: 61  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 120

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLAILIGVAK 558
           L  + I            +++V E   N    + L +  +      K     +    + +
Sbjct: 121 LYDYEI--------TDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERK-----SYWKNMLE 166

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           AVH +H   I     +  L   N L+ +  + KL D+GI+  M+    
Sbjct: 167 AVHTIHQHGI----VHSDLKPANFLIVDGML-KLIDFGIANQMQPDTT 209

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 26/164 (15%)

Query: 449 GEGSRGKLYKGRLENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHP--HLVSLLGH 504
           G G   K+++   E     AI+  +L      ++ + +  + +L+KLQ     ++ L  +
Sbjct: 18  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY 77

Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLAILIGVAKAVHF 562
            I            +++V E   N    + L +  +      K     +    + +AVH 
Sbjct: 78  EI--------TDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERK-----SYWKNMLEAVHT 123

Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
           +H   I     +  L   N L+ +  + KL D+GI+  M+    
Sbjct: 124 IHQHGI----VHSDLKPANFLIVDGML-KLIDFGIANQMQPDTT 162

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 60/333 (18%), Positives = 120/333 (36%), Gaps = 115/333 (34%)

Query: 449 GEGSRGKLYKGRL--------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ------ 494
           GEG  G++             +    VA++ L   K  +    K   D +S+++      
Sbjct: 90  GEGCFGQVVMAEAVGIDKDKPKEAVTVAVKML---KDDA--TEKDLSDLVSEMEMMKMIG 144

Query: 495 -HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-------------SENCP 540
            H ++++LLG C + G         ++++ EY   G+ R +L                 P
Sbjct: 145 KHKNIINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 196

Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
           E  + + D ++    +A+ + +L S        +R L   N+L+ E+ + K++D+G++  
Sbjct: 197 EEQMTFKDLVSCTYQLARGMEYLASQ----KCIHRDLAARNVLVTENNVMKIADFGLARD 252

Query: 600 MEEHEKLEAKGEG--------PKA-RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF 650
           +   +  +    G        P+A      +   T                + DV++FG 
Sbjct: 253 INNIDYYKKTTNGRLPVKWMAPEALFDRV-Y---TH---------------QSDVWSFG- 292

Query: 651 ILLESLVGPIVTGKGEAFLLNEMASFGSQ---------------DGRRRIVDPVVLTTCS 695
                 V           L+ E+ + G                 +G  R+  P     C+
Sbjct: 293 ------V-----------LMWEIFTLGGSPYPGIPVEELFKLLKEG-HRMDKP---ANCT 331

Query: 696 QESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
            E    +  +   C    PS RP+F+ ++ +L 
Sbjct: 332 NE----LYMMMRDCWHAVPSQRPTFKQLVEDLD 360

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 35/164 (21%)

Query: 447 FMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
            +G+G+ G +Y GR L N   +AI+ +        Q L   +     L+H ++V  L   
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYL--- 85

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA------ILIGVAKA 559
              GS  ++   K+F+  E +P GS  A L        LK +++        IL G+   
Sbjct: 86  ---GSFSENGFIKIFM--EQVPGGSLSALLRSKW--GPLKDNEQTIGFYTKQILEGLK-- 136

Query: 560 VHFLHSSV-----ISGSFSNRLTTNNILLDEHR-IAKLSDYGIS 597
             +LH +      I G        +N+L++ +  + K+SD+G S
Sbjct: 137 --YLHDNQIVHRDIKG--------DNVLINTYSGVLKISDFGTS 170

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 34/182 (18%), Positives = 70/182 (38%), Gaps = 26/182 (14%)

Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIR--SLTFLKKYSIQNLKVRLD 488
           Y + +      +  L  +G G   K+++   E     AI+  +L      ++ + +  + 
Sbjct: 19  YFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIA 78

Query: 489 FLSKLQHP--HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVL 544
           +L+KLQ     ++ L  + I            +++V E   N    + L +  +      
Sbjct: 79  YLNKLQQHSDKIIRLYDYEI--------TDQYIYMVMEC-GNIDLNSWLKKKKSIDPWER 129

Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
           K     +    + +AVH +H   I     +  L   N L+ +  + KL D+GI+  M+  
Sbjct: 130 K-----SYWKNMLEAVHTIHQHGI----VHSDLKPANFLIVDGML-KLIDFGIANQMQPD 179

Query: 604 EK 605
             
Sbjct: 180 TT 181

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 54/192 (28%)

Query: 443 DSLSFM---GEGSRGKLYKGRLENG------TYVAIRSLTFLKKYSIQNLKVRLDFLS-- 491
           +++ ++   GEG+ G++++ R          T VA++ L   K+ +  +  ++ DF    
Sbjct: 47  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKML---KEEA--SADMQADFQREA 101

Query: 492 ----KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV---- 543
               +  +P++V LLG C             + L++EY+  G     L    P  V    
Sbjct: 102 ALMAEFDNPNIVKLLGVCAVGKP--------MCLLFEYMAYGDLNEFLRSMSPHTVCSLS 153

Query: 544 -----------------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDE 585
                            L  +++L I   VA  + +L        F +R L T N L+ E
Sbjct: 154 HSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER----KFVHRDLATRNCLVGE 209

Query: 586 HRIAKLSDYGIS 597
           + + K++D+G+S
Sbjct: 210 NMVVKIADFGLS 221

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 36/179 (20%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQH 495
            NF     +G G   ++Y+   L +G  VA++ +            +    +D L +L H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----------YRAHLSENCPENVLK 545
           P+++      IE         N++ +V E    G            +  + E     V K
Sbjct: 92  PNVIKYYASFIED--------NELNIVLELADAGDLSRMIKHFKKQKRLIPE---RTVWK 140

Query: 546 WSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
           +       + +  A+  +HS  +     +R +   N+ +    + KL D G+       
Sbjct: 141 Y------FVQLCSALEHMHSRRVM----HRDIKPANVFITATGVVKLGDLGLGRFFSSK 189

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 46/193 (23%)

Query: 449 GEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-------QH 495
           G G+ GK+ +         +    VA++ L   K  +  +L  R   +S+L        H
Sbjct: 32  GAGAFGKVVEATAYGLIKSDAAMTVAVKML---KPSA--HLTEREALMSELKVLSYLGNH 86

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV------------ 543
            ++V+LLG C   G           ++ EY   G     L       +            
Sbjct: 87  MNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDD 138

Query: 544 ---LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
              L   D L+    VAK + FL S     +  +R L   NILL   RI K+ D+G++  
Sbjct: 139 ELALDLEDLLSFSYQVAKGMAFLASK----NCIHRDLAARNILLTHGRITKICDFGLARD 194

Query: 600 MEEHEKLEAKGEG 612
           ++       KG  
Sbjct: 195 IKNDSNYVVKGNA 207

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 44/184 (23%)

Query: 449 GEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-------QH 495
           G G+ G++ +              VA++ L   K+ +          +S+L        H
Sbjct: 36  GRGAFGQVIEADAFGIDKTATCRTVAVKML---KEGA--THSEHRALMSELKILIHIGHH 90

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-------------SENCPEN 542
            ++V+LLG C + G         + ++ E+   G+   +L              E+  ++
Sbjct: 91  LNVVNLLGACTKPGGP-------LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS-IIM 600
            L     +     VAK + FL S        +R L   NILL E  + K+ D+G++  I 
Sbjct: 144 FLTLEHLICYSFQVAKGMEFLASR----KCIHRDLAARNILLSEKNVVKICDFGLARDIY 199

Query: 601 EEHE 604
           ++ +
Sbjct: 200 KDPD 203

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 67/334 (20%), Positives = 112/334 (33%), Gaps = 112/334 (33%)

Query: 449 GEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-------QH 495
           G G+ GK+ +         +    VA++ L   K  +  +   +   +S+L       QH
Sbjct: 55  GAGAFGKVVEATAFGLGKEDAVLKVAVKML---KSTA--HADEKEALMSELKIMSHLGQH 109

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE-----------NVL 544
            ++V+LLG C   G         V ++ EY   G     L                 +  
Sbjct: 110 ENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTA 161

Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
              D L     VA+ + FL S     +  +R +   N+LL    +AK+ D+G++  +   
Sbjct: 162 STRDLLHFSSQVAQGMAFLASK----NCIHRDVAARNVLLTNGHVAKIGDFGLARDIMND 217

Query: 604 EKLEAKGEG--------PKARYGFLFICR-TSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
                KG          P++    +F C  T                + DV+++G     
Sbjct: 218 SNYIVKGNARLPVKWMAPES----IFDCVYTV---------------QSDVWSYG----- 253

Query: 655 SLVGPIVTGKGEAFLLNEMASFGSQ----------------DGRRRIVDPVVLTTCSQES 698
                         LL E+ S G                  DG  ++  P       +  
Sbjct: 254 -------------ILLWEIFSLGLNPYPGILVNSKFYKLVKDG-YQMAQP---AFAPKN- 295

Query: 699 LSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ 732
              + SI   C   EP+ RP+F+ +   LQ  AQ
Sbjct: 296 ---IYSIMQACWALEPTHRPTFQQICSFLQEQAQ 326

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 37/193 (19%), Positives = 80/193 (41%), Gaps = 46/193 (23%)

Query: 449 GEGSRGKLYKGRL--------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ------ 494
           GEG+ G++             +    VA++ L   K  +    K   D +S+++      
Sbjct: 44  GEGAFGQVVMAEAVGIDKDKPKEAVTVAVKML---KDDA--TEKDLSDLVSEMEMMKMIG 98

Query: 495 -HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-------------SENCP 540
            H ++++LLG C + G         ++++ EY   G+ R +L                 P
Sbjct: 99  KHKNIINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 150

Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
           E  + + D ++    +A+ + +L S        +R L   N+L+ E+ + K++D+G++  
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQ----KCIHRDLAARNVLVTENNVMKIADFGLARD 206

Query: 600 MEEHEKLEAKGEG 612
           +   +  +    G
Sbjct: 207 INNIDYYKKTTNG 219

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 63.0 bits (154), Expect = 7e-11
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 41/182 (22%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR------LDFLSKL 493
            +    F+G+G   K ++    +     A +    + K  +     R      +     L
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGK---IVPKSLLLKPHQREKMSMEISIHRSL 72

Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS------YRAHLSENCPENVLKWS 547
            H H+V       E         + VF+V E     S       R  L+E  PE      
Sbjct: 73  AHQHVVGFH-GFFED-------NDFVFVVLELCRRRSLLELHKRRKALTE--PEA----- 117

Query: 548 DRLAILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS-IIMEEHE 604
            R   L  +     +LH   VI     +R L   N+ L+E    K+ D+G++  +  + E
Sbjct: 118 -R-YYLRQIVLGCQYLHRNRVI-----HRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE 170

Query: 605 KL 606
           + 
Sbjct: 171 RK 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 8e-11
 Identities = 95/605 (15%), Positives = 180/605 (29%), Gaps = 181/605 (29%)

Query: 71  PIPNQTLSESFSIDSFVTTLTRL-TTLRVLSLVSLGIWGPLPDKIHRL-SSLELLDMSSN 128
           PI  +    S     ++    RL    +V +  ++           +L  +L  L  + N
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKN 152

Query: 129 -FLFGAIPSGISRLVRLQTLTMD--TNFFDDNVPDWW----------DSLSNLTVLSLKS 175
             + G + SG + +  L            D  +  +W            L  L  L  + 
Sbjct: 153 VLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLD-LRENKLDSGLPLMPK 234
           +            I           EL   L        L VL  ++  K  +   L  K
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 235 GLVTVLLSRN-----LFSGAIPQQF-----------GELAQL--QHLDLSFNDLSGIPPS 276
            L+T   +R        S A                 E+  L  ++LD    DL   P  
Sbjct: 268 ILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PRE 321

Query: 277 VLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHKEAF 336
           VL + P      L+  +++ ++   L+       ++  ++     + L+   P+++++ F
Sbjct: 322 VLTTNP----RRLS--IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 337 CKETNGSKSSRGREIGLIAAIAFGAVLVLVLSAF--GVIIYCKRCCTKGRQEQSTRPKIV 394
            +                            LS F     I                  ++
Sbjct: 376 DR----------------------------LSVFPPSAHIPTILLS------------LI 395

Query: 395 QDNAPTGVSSEV---LANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEG 451
             +        V   L    L+ +  K  T   P+    YLE   +  N           
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---YLELKVKLEN----------- 441

Query: 452 SRGKLYKGRLENGTYVAIRSLTFLKKYSIQNL-KVRLD--FLSKLQHPHLVSLLGHCIES 508
               L++  +       +      K +   +L    LD  F S + H HL +     IE 
Sbjct: 442 -EYALHR-SI-------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKN-----IEH 486

Query: 509 GSQDDSNTNKVFLVYEYIPN------------GS----------YRAHLSENCPENVLKW 546
             +  +    VFL + ++              GS          Y+ ++ +N P+     
Sbjct: 487 P-ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY---- 541

Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH----RIAKLSDYGISIIMEE 602
            +RL   I     + FL                N++  ++    RIA +++   +I  E 
Sbjct: 542 -ERLVNAI-----LDFLPKI-----------EENLICSKYTDLLRIALMAEDE-AIFEEA 583

Query: 603 HEKLE 607
           H++++
Sbjct: 584 HKQVQ 588

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 8e-11
 Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 31/282 (10%)

Query: 12  LRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHP 71
           L   L   +   IW   +     +         C+D++        +  V+++T      
Sbjct: 309 LNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSEL 368

Query: 72  IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLF 131
              + L E    ++    LT +  +R L  +         + +   S+L+ +D       
Sbjct: 369 ESCKELQE-LEPENKWCLLTIILLMRALDPLLY-----EKETLQYFSTLKAVDPM----- 417

Query: 132 GAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT 191
                      R   L    + F           +++ VL L    L       + ++  
Sbjct: 418 -----------RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLL 464

Query: 192 LTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS--GLPLMPKGLVTVLLSRNLFSG- 248
           +T + +S+N L    P ++AL  L VL   +N L++  G+  +P+ L  +LL  N     
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR-LQELLLCNNRLQQS 523

Query: 249 AIPQQFGELAQLQHLDLSFNDLSGIPP---SVLFSLPNISYL 287
           A  Q      +L  L+L  N L         +   LP++S +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 38/223 (17%), Positives = 63/223 (28%), Gaps = 28/223 (12%)

Query: 73  PNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFG 132
           P  +L++     +F    T   + +   L+                 L   ++S      
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSATDEQLFRCELSVEKST- 362

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
            + S +     LQ L  +  +    +     +L  L                   R A L
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422

Query: 193 TDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ 252
            D  + +  L            + VL L    L          L                
Sbjct: 423 DD--LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCHL---------------- 459

Query: 253 QFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
              +L  + HLDLS N L  +PP+ L +L  +  L  + N L 
Sbjct: 460 --EQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE 499

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 37/179 (20%)

Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR-LDFLS 491
           E +E  +       +G GS G++++ +  + G   A+      KK  ++  +V  L   +
Sbjct: 52  EYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAV------KKVRLEVFRVEELVACA 105

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDR 549
            L  P +V L G   E           V +  E +  GS    + +    PE+   +   
Sbjct: 106 GLSSPRIVPLYGAVREG--------PWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLG 157

Query: 550 LAILIGVAKAVHFLHSSV-----ISGSFSNRLTTNNILLDEH-RIAKLSDYGISIIMEE 602
              L G+     +LH+       +           N+LL      A L D+G ++ ++ 
Sbjct: 158 -QALEGLE----YLHTRRILHGDVKAD--------NVLLSSDGSRAALCDFGHALCLQP 203

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 41/182 (22%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR------LDFLSKL 493
            +    F+G+G   K ++    +     A +    + K  +     R      +     L
Sbjct: 42  RYVRGRFLGKGGFAKCFEISDADTKEVFAGK---IVPKSLLLKPHQREKMSMEISIHRSL 98

Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS------YRAHLSENCPENVLKWS 547
            H H+V       E         + VF+V E     S       R  L+E  PE      
Sbjct: 99  AHQHVVGFH-GFFED-------NDFVFVVLELCRRRSLLELHKRRKALTE--PEA----- 143

Query: 548 DRLAILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS-IIMEEHE 604
            R   L  +     +LH   VI     +R L   N+ L+E    K+ D+G++  +  + E
Sbjct: 144 -R-YYLRQIVLGCQYLHRNRVI-----HRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE 196

Query: 605 KL 606
           + 
Sbjct: 197 RK 198

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G+G+  K+   R +  G  VAI+ +  T L   S+Q L   +  +  L HP++V L    
Sbjct: 24  GKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLF-EV 82

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS 565
           IE+          ++L+ EY   G    +L  +     +K  +  +    +  AV + H 
Sbjct: 83  IET-------EKTLYLIMEYASGGEVFDYLVAH---GRMKEKEARSKFRQIVSAVQYCHQ 132

Query: 566 SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
             I     +R L   N+LLD     K++D+G S       KL+
Sbjct: 133 KRIV----HRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLD 171

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 28/191 (14%), Positives = 75/191 (39%), Gaps = 45/191 (23%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDF---------- 489
           N++  +  + +G   K+     ++  + A++     +K  ++  +               
Sbjct: 31  NDYRIIRTLNQGKFNKIILCE-KDNKFYALKKY---EKSLLEKKRDFTKSNNDKISIKSK 86

Query: 490 ----------LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SYRAHLS 536
                     ++ +++ + ++  G  I        N ++V+++YEY+ N     +  +  
Sbjct: 87  YDDFKNELQIITDIKNEYCLTCEGI-IT-------NYDEVYIIYEYMENDSILKFDEYFF 138

Query: 537 ENCPENVLKWSDRLAILI--GVAKAVHFLHS--SVISGSFSNR-LTTNNILLDEHRIAKL 591
                       ++   I   V  +  ++H+  ++      +R +  +NIL+D++   KL
Sbjct: 139 VLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNIC-----HRDVKPSNILMDKNGRVKL 193

Query: 592 SDYGISIIMEE 602
           SD+G S  M +
Sbjct: 194 SDFGESEYMVD 204

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 46/204 (22%), Positives = 75/204 (36%), Gaps = 63/204 (30%)

Query: 449 GEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHP 496
           GEG  GK+ K            T VA++ L   K+ +  +     D LS      ++ HP
Sbjct: 32  GEGEFGKVVKATAFHLKGRAGYTTVAVKML---KENA--SPSELRDLLSEFNVLKQVNHP 86

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV------------- 543
           H++ L G C + G         + L+ EY   GS R  L E+                  
Sbjct: 87  HVIKLYGACSQDGP--------LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSS 138

Query: 544 --------LKWSDRLAILIGVAK------AVHFLHSSVISGSFSNR-LTTNNILLDEHRI 588
                   L   D ++    +++       +  +H          R L   NIL+ E R 
Sbjct: 139 LDHPDERALTMGDLISFAWQISQGMQYLAEMKLVH----------RDLAARNILVAEGRK 188

Query: 589 AKLSDYGISIIMEEHEKLEAKGEG 612
            K+SD+G+S  + E +    + +G
Sbjct: 189 MKISDFGLSRDVYEEDSYVKRSQG 212

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 46/193 (23%)

Query: 449 GEGSRGKLYKGRL--------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ------ 494
           GEG+ G++                T VA++ L   K  +    K   D +S+++      
Sbjct: 78  GEGAFGQVVLAEAIGLDKDKPNRVTKVAVKML---KSDA--TEKDLSDLISEMEMMKMIG 132

Query: 495 -HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-------------SENCP 540
            H ++++LLG C + G         ++++ EY   G+ R +L               + P
Sbjct: 133 KHKNIINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNP 184

Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
           E  L   D ++    VA+ + +L S        +R L   N+L+ E  + K++D+G++  
Sbjct: 185 EEQLSSKDLVSCAYQVARGMEYLASK----KCIHRDLAARNVLVTEDNVMKIADFGLARD 240

Query: 600 MEEHEKLEAKGEG 612
           +   +  +    G
Sbjct: 241 IHHIDYYKKTTNG 253

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 31/142 (21%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLREN 223
            ++T L L  NQ     P  +     LT I +SNN +S  L +   S +T L  L L  N
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88

Query: 224 KLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN 283
           +L      +P                    F  L  L+ L L  ND+S +P      L  
Sbjct: 89  RLRC----IPPRT-----------------FDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127

Query: 284 ISYLHLASNMLSGTLPKDLSCG 305
           +S+L + +N      P    C 
Sbjct: 128 LSHLAIGAN------PLYCDCN 143

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNL 168
           +P ++     L L+D+S+N +   + +   S + +L TL +  N      P  +D L +L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104

Query: 169 TVLSLKSNQLK----GQFPSSICRIATLTDIAMSNN 200
            +LSL  N +     G F      ++ L+ +A+  N
Sbjct: 105 RLLSLHGNDISVVPEGAFN----DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 228 GLPLMPKGL---VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN 283
           GL ++PKG+   VT L L  N F+  +P++      L  +DLS N +S +      ++  
Sbjct: 21  GLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 284 ISYLHLASNMLSGTLPK 300
           +  L L+ N L   +P 
Sbjct: 80  LLTLILSYNRLR-CIPP 95

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 31/140 (22%)

Query: 169 TVLSLKSNQLKGQFPSSI-CRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKL 225
           T L L  N+L       +  R+  L  + +  N+L+  +        + +  L L ENK+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 226 DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
                 +   +                 F  L QL+ L+L  N +S + P     L +++
Sbjct: 91  KE----ISNKM-----------------FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 286 YLHLASNMLSGTLPKDLSCG 305
            L+LASN      P + +C 
Sbjct: 130 SLNLASN------PFNCNCH 143

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 115 HRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
            RL  L  L++  N L   I          +Q L +  N   +     +  L  L  L+L
Sbjct: 51  GRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109

Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNN 200
             NQ+    P S   + +LT + +++N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 21/88 (23%)

Query: 213 TSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG 272
                L L +N+L     +   GL                 FG L  L  L+L  N L+G
Sbjct: 29  LHTTELLLNDNELGR---ISSDGL-----------------FGRLPHLVKLELKRNQLTG 68

Query: 273 IPPSVLFSLPNISYLHLASNMLSGTLPK 300
           I P+      +I  L L  N +   +  
Sbjct: 69  IEPNAFEGASHIQELQLGENKIK-EISN 95

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
           ++ +  +G+G+ GK+YK +  E G   A + +    +  +++  V ++ L+   HP++V 
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 80

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
           LLG              K++++ E+ P G+  A + E   +  L       +   + +A+
Sbjct: 81  LLGAYYHD--------GKLWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVVCRQMLEAL 130

Query: 561 HFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           +FLHS  +I     +R L   N+L+      +L+D+G+S
Sbjct: 131 NFLHSKRII-----HRDLKAGNVLMTLEGDIRLADFGVS 164

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 59/301 (19%), Positives = 97/301 (32%), Gaps = 72/301 (23%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKL-QHP 496
           +F  LS +G GS G+++K R  E+G   A++     F            +    K+ QHP
Sbjct: 58  SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC---PENVLKWSDRLAIL 553
             V L     E G         ++L  E     S + H        PE  +        L
Sbjct: 118 CCVRLEQAWEEGG--------ILYLQTELC-GPSLQQHCEAWGASLPEAQVW-----GYL 163

Query: 554 IGVAKAVHFLHSS-VISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA-KG 610
                A+  LHS  ++     +  +   NI L      KL D+G+ + +      E  +G
Sbjct: 164 RDTLLALAHLHSQGLV-----HLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEG 218

Query: 611 -------EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTG 663
                  E          + + S                 DV++ G  +LE     +   
Sbjct: 219 DPRYMAPE----------LLQGSYGTAA------------DVFSLGLTILE-----VACN 251

Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
                          Q  R+  + P      S E  S++       + P+P  R + E +
Sbjct: 252 MELPHGGEGW-----QQLRQGYLPPEFTAGLSSELRSVL----VMMLEPDPKLRATAEAL 302

Query: 724 L 724
           L
Sbjct: 303 L 303

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 59.5 bits (145), Expect = 8e-10
 Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 31/184 (16%)

Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR------ 486
            + E   +F   + +G+GS   +Y+   +  G  VAI+    + K ++    +       
Sbjct: 5   CIGEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIK---MIDKKAMYKAGMVQRVQNE 61

Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKW 546
           +    +L+HP ++ L     E        +N V+LV E   NG    +L          +
Sbjct: 62  VKIHCQLKHPSILELYN-YFED-------SNYVYLVLEMCHNGEMNRYLKNRVK----PF 109

Query: 547 SDRLA--ILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEE 602
           S+  A   +  +   + +LHS  ++     +R LT +N+LL  +   K++D+G++  ++ 
Sbjct: 110 SENEARHFMHQIITGMLYLHSHGIL-----HRDLTLSNLLLTRNMNIKIADFGLATQLKM 164

Query: 603 HEKL 606
             + 
Sbjct: 165 PHEK 168

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 31/179 (17%), Positives = 75/179 (41%), Gaps = 49/179 (27%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD---------- 488
           + ++ L+ +G+G+ G+++K R  + G  VA      LKK       V ++          
Sbjct: 17  SKYEKLAKIGQGTFGEVFKARHRKTGQKVA------LKK-------VLMENEKEGFPITA 63

Query: 489 -----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCPE 541
                 L  L+H ++V+L+  C    S  +     ++LV+++  +      +++      
Sbjct: 64  LREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTL 123

Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
           + +K      ++  +   ++++H         N+     +   N+L+    + KL+D+G
Sbjct: 124 SEIK-----RVMQMLLNGLYYIH--------RNKILHRDMKAANVLITRDGVLKLADFG 169

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 13/170 (7%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFL 490
           L  L++    F+ +  +G G+ G++YKGR ++ G   AI+ +  +     + +K  ++ L
Sbjct: 16  LSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD-VTGDEEEEIKQEINML 74

Query: 491 SKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
            K   H ++ +  G  I+         ++++LV E+   GS    L +N   N LK    
Sbjct: 75  KKYSHHRNIATYYGAFIKKNPP--GMDDQLWLVMEFCGAGSVT-DLIKNTKGNTLKEEWI 131

Query: 550 LAILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
             I   + + +  LH   VI     +R +   N+LL E+   KL D+G+S
Sbjct: 132 AYICREILRGLSHLHQHKVI-----HRDIKGQNVLLTENAEVKLVDFGVS 176

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 52/191 (27%)

Query: 449 GEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-------QH 495
           G G+ GK+                VA++ L   K+ +  +   R   +S+L        H
Sbjct: 54  GSGAFGKVMNATAYGISKTGVSIQVAVKML---KEKA--DSSEREALMSELKMMTQLGSH 108

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE-------------- 541
            ++V+LLG C  SG         ++L++EY   G    +L     +              
Sbjct: 109 ENIVNLLGACTLSG--------PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRL 160

Query: 542 ------NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDY 594
                 NVL + D L     VAK + FL       S  +R L   N+L+   ++ K+ D+
Sbjct: 161 EEEEDLNVLTFEDLLCFAYQVAKGMEFLE----FKSCVHRDLAARNVLVTHGKVVKICDF 216

Query: 595 GIS-IIMEEHE 604
           G++  IM +  
Sbjct: 217 GLARDIMSDSN 227

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 38/173 (21%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR------LDFLSKLQHPHLVSL 501
           G G+ GK+  G     G  VA++    L +  I++L V       +  L   +HPH++ L
Sbjct: 20  GVGTFGKVKIGEHQLTGHKVAVK---ILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKL 76

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK--- 558
               I +           F+V EY+  G    ++ ++          R+  +        
Sbjct: 77  Y-QVIST-------PTDFFMVMEYVSGGELFDYICKH---------GRVEEMEARRLFQQ 119

Query: 559 ---AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
              AV + H  ++     +R L   N+LLD H  AK++D+G+S +M + E L 
Sbjct: 120 ILSAVDYCHRHMV----VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR 168

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 56/174 (32%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
           ++P+GI        L +++N         +D L+ LT LSL  NQ++             
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ------------- 65

Query: 193 TDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI 250
                        LPD     LT L +L L ENKL S    +P G+              
Sbjct: 66  ------------SLPDGVFDKLTKLTILYLHENKLQS----LPNGV-------------- 95

Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC 304
              F +L QL+ L L  N L  +P  +   L ++  + L +N      P D SC
Sbjct: 96  ---FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN------PWDCSC 140

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 51/180 (28%)

Query: 438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD-------- 488
           +++ F  L  +G G+   +YKG     G YVA      LK       +V+LD        
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVA------LK-------EVKLDSEEGTPST 49

Query: 489 ------FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCP 540
                  + +L+H ++V L  + +          NK+ LV+E++ N    Y    +    
Sbjct: 50  AIREISLMKELKHENIVRL--YDVIHTE------NKLTLVFEFMDNDLKKYMDSRTVGNT 101

Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
              L+ +        + + + F H         N+     L   N+L+++    KL D+G
Sbjct: 102 PRGLELNLVKYFQWQLLQGLAFCH--------ENKILHRDLKPQNLLINKRGQLKLGDFG 153

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 26/175 (14%)

Query: 432 LEELKEATNN------FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK 484
           LE+L+   +       +     +G+G+ G +Y    +  G  VAIR +   ++   + + 
Sbjct: 6   LEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII 65

Query: 485 VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL 544
             +  + + ++P++V+ L   +          +++++V EY+  GS    L++   E  +
Sbjct: 66  NEILVMRENKNPNIVNYLDSYLVG--------DELWVVMEYLAGGS----LTDVVTETCM 113

Query: 545 KWSDRLAILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
                 A+     +A+ FLHS  VI     +R + ++NILL      KL+D+G  
Sbjct: 114 DEGQIAAVCRECLQALEFLHSNQVI-----HRDIKSDNILLGMDGSVKLTDFGFC 163

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 21/116 (18%)

Query: 187 CRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLF 246
           C     + +  + +     L  +    +L  L +   +    L                 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE---------------- 48

Query: 247 SGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL 302
                +    L +L++L +  + L  + P      P +S L+L+ N L  +L    
Sbjct: 49  ----LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT 99

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 6e-08
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 24/114 (21%)

Query: 183 PSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
              +     LT++ + N +    L    +  L  L  L + ++ L               
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF------------- 70

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
           ++ + F            +L  L+LSFN L  +         ++  L L+ N L
Sbjct: 71  VAPDAFHF--------TPRLSRLNLSFNALESLSWKT-VQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 25/117 (21%)

Query: 111 PDKIHRLSSLELLDMSSNFLFGAIPSG-ISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
              +    +L  L + +      +    +  L  L+ LT+  +      PD +     L+
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLD 226
            L+L                        S N L           SL  L L  N L 
Sbjct: 84  RLNL------------------------SFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 57.5 bits (140), Expect = 4e-09
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 52/177 (29%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD---------- 488
            NF  +  +GEG+ G +YK R    G  VA      LK       K+RLD          
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVA------LK-------KIRLDTETEGVPSTA 49

Query: 489 -----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV 543
                 L +L HP++V L    +          NK++LV+E++          +      
Sbjct: 50  IREISLLKELNHPNIVKL--LDVIHTE------NKLYLVFEFLHQD--LKKFMDASALTG 99

Query: 544 LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
           +      + L  + + + F H        S+R     L   N+L++     KL+D+G
Sbjct: 100 IPLPLIKSYLFQLLQGLAFCH--------SHRVLHRDLKPQNLLINTEGAIKLADFG 148

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 56/178 (31%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLD----------- 488
             +  L  +GEG+ G +YK +   G  VA      LK       ++RLD           
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQGRIVA------LK-------RIRLDAEDEGIPSTAI 67

Query: 489 ----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCPEN 542
                L +L HP++VSL    +            + LV+E++                ++
Sbjct: 68  REISLLKELHHPNIVSL--IDVIHSE------RCLTLVFEFMEKDLKKVLDENKTGLQDS 119

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
            +K       L  + + V   H         +R     L   N+L++     KL+D+G
Sbjct: 120 QIK-----IYLYQLLRGVAHCH--------QHRILHRDLKPQNLLINSDGALKLADFG 164

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.0 bits (141), Expect = 6e-09
 Identities = 42/276 (15%), Positives = 81/276 (29%), Gaps = 62/276 (22%)

Query: 74  NQTLSE------SFSIDSFVTTLTRLTTLRVLSLVSLGI----WGPLPDKIHRLSSLELL 123
           +  +          S   +   L  L   +V+ L   G+       +   +    +L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 124 DMSSNFLFGAIPSGISRL--------VRLQTLTMDTNFFDDNVPDWWDSLS-------NL 168
           ++ SN L      G+  +         ++Q L++               LS        L
Sbjct: 62  NLRSNEL---GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG---AGCGVLSSTLRTLPTL 115

Query: 169 TVLSLKSNQLKGQFPSSICRIA-----TLTDIAMSNNELSGKLPDMSAL-------TSLH 216
             L L  N L       +C         L  + +    LS        L           
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--SCEPLASVLRAKPDFK 173

Query: 217 VLDLRENKL-DSGLPLMPKGL------VTVL-LSRNLFSGAIPQQFGEL----AQLQHLD 264
            L +  N + ++G+ ++ +GL      +  L L     +    +    +    A L+ L 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 265 LSFNDLSG-----IPPSVLFSLPNISYLHLASNMLS 295
           L  N L       + P +L     +  L +    ++
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 42/248 (16%), Positives = 84/248 (33%), Gaps = 49/248 (19%)

Query: 91  TRLTTLRVLSLVSLGI--WGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLV------ 142
            ++  L  L    L     G L   +  L +L+ L +S N L     +G+  L       
Sbjct: 85  CKIQKLS-LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL---GDAGLQLLCEGLLDP 140

Query: 143 --RLQTLTMDTNFFDD----NVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRI-----AT 191
             RL+ L ++           +     +  +   L++ +N +       +C+        
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 192 LTDIAMSNNELSGKLPDMSAL-------TSLHVLDLRENKL-DSGLPLMPKG-------L 236
           L  + + +  ++    +   L        SL  L L  NKL D G+  +  G       L
Sbjct: 201 LEALKLESCGVTSD--NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 237 VTVLLSRNLFS----GAIPQQFGELAQLQHLDLSFNDLS-----GIPPSVLFSLPNISYL 287
            T+ +     +    G + +       L+ L L+ N+L       +  ++L     +  L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318

Query: 288 HLASNMLS 295
            + S   +
Sbjct: 319 WVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 27/163 (16%)

Query: 166 SNLTVLSLKSNQLKGQFPSSICR-IATLTDIAMSNNELSGKLPDMSAL-------TSLHV 217
            ++  L ++  +L     + +   +     + + +  L+        +        +L  
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNPALAE 60

Query: 218 LDLRENKL-DSGLPLMPKGL-------VTVLLSRNLFS----GAIPQQFGELAQLQHLDL 265
           L+LR N+L D G+  + +GL         + L     +    G +      L  LQ L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 266 SFNDLSGIPPSVLFSL-----PNISYLHLASNMLSGTLPKDLS 303
           S N L      +L          +  L L    LS    + L+
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 50/251 (19%), Positives = 87/251 (34%), Gaps = 55/251 (21%)

Query: 91  TRLTTLRVLSLVSLGIWG--PLPDKIHRLSSLELLDMSSNFLFGAIPSGISRL------- 141
            RL  L+ L   SL      PL   +      + L +S+N +     +G+  L       
Sbjct: 142 CRLEKLQ-LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI---NEAGVRVLCQGLKDS 197

Query: 142 -VRLQTLTMDTNFFDDNVPDWWDSLS-------NLTVLSLKSNQLKGQFPSSICRIA--- 190
             +L+ L +++        D    L        +L  L+L SN+L     + +C      
Sbjct: 198 PCQLEALKLESCGVTS---DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 191 --TLTDIAMSNNELSGKLPDMSAL-------TSLHVLDLRENKL-DSGLPLMPKGLV--- 237
              L  + +    ++ K      L        SL  L L  N+L D G  L+ + L+   
Sbjct: 255 SSRLRTLWIWECGITAK--GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312

Query: 238 ----TVLLSRNLFSGAIPQQFGELAQ----LQHLDLSFNDL--SGIPP---SVLFSLPNI 284
               ++ +    F+ A    F  +      L  L +S N L  +G+      +      +
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372

Query: 285 SYLHLASNMLS 295
             L LA   +S
Sbjct: 373 RVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 47/217 (21%), Positives = 72/217 (33%), Gaps = 45/217 (20%)

Query: 95  TLRVLSLVSLGI----WGPLPDKIHRLSSLELLDMSSNFL--FGAI---PSGISRLVRLQ 145
            L  L L S G+       L   +   +SL  L + SN L   G     P  +    RL+
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 146 TLTMDTNFFDDNVPDWWDSLS-------NLTVLSLKSNQLKGQFPSSICRI-----ATLT 193
           TL +               L        +L  LSL  N+L  +    +C         L 
Sbjct: 260 TLWIWECGITA---KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 194 DIAMSNNELSGKLPDMSAL-------TSLHVLDLRENKL-DSGLPLMPKGL------VTV 239
            + + +   +      S           L  L +  N+L D+G+  + +GL      + V
Sbjct: 317 SLWVKSCSFTAA--CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 240 L-LSRNLFSGAIPQQFGEL----AQLQHLDLSFNDLS 271
           L L+    S +              L+ LDLS N L 
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 47/182 (25%)

Query: 438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK----------VR 486
           AT+ ++ ++ +G G+ G +YK R   +G +VA      LK   + N            VR
Sbjct: 7   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVA------LKSVRVPNGGGGGGGLPISTVR 60

Query: 487 ----LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH----LSEN 538
               L  L   +HP++V L    + + S+ D    KV LV+E++              + 
Sbjct: 61  EVALLRRLEAFEHPNVVRL--MDVCATSRTDREI-KVTLVFEHVD------QDLRTYLDK 111

Query: 539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSD 593
            P   L       ++    + + FLH        +N      L   NIL+      KL+D
Sbjct: 112 APPPGLPAETIKDLMRQFLRGLDFLH--------ANCIVHRDLKPENILVTSGGTVKLAD 163

Query: 594 YG 595
           +G
Sbjct: 164 FG 165

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 56.8 bits (138), Expect = 7e-09
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 57/179 (31%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD---------- 488
             ++ L  +GEG+ G ++K +  E    VA      LK       +VRLD          
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVA------LK-------RVRLDDDDEGVPSSA 48

Query: 489 -----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCPE 541
                 L +L+H ++V L  H +           K+ LV+E+       Y    + +   
Sbjct: 49  LREICLLKELKHKNIVRL--HDVLHSD------KKLTLVFEFCDQDLKKYFDSCNGDLDP 100

Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
            ++K     + L  + K + F H        S       L   N+L++ +   KL+++G
Sbjct: 101 EIVK-----SFLFQLLKGLGFCH--------SRNVLHRDLKPQNLLINRNGELKLANFG 146

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 20/159 (12%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVS 500
            DS   +GEGS G +   R   +G  VA++ +   K+   + L   +  +   QH ++V 
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE 106

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
           +    +           +++++ E++  G+    L++   +  L       +   V +A+
Sbjct: 107 MYKSYLVG--------EELWVLMEFLQGGA----LTDIVSQVRLNEEQIATVCEAVLQAL 154

Query: 561 HFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
            +LH+  VI     +R + +++ILL      KLSD+G  
Sbjct: 155 AYLHAQGVI-----HRDIKSDSILLTLDGRVKLSDFGFC 188

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 38/173 (21%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR------LDFLSKLQHPHLVSL 501
           G G+ GK+  G+    G  VA++    L +  I++L V       +  L   +HPH++ L
Sbjct: 25  GVGTFGKVKVGKHELTGHKVAVK---ILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKL 81

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK--- 558
               I +        + +F+V EY+  G    ++ +N          RL           
Sbjct: 82  Y-QVIST-------PSDIFMVMEYVSGGELFDYICKN---------GRLDEKESRRLFQQ 124

Query: 559 ---AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
               V + H  ++     +R L   N+LLD H  AK++D+G+S +M + E L 
Sbjct: 125 ILSGVDYCHRHMV----VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR 173

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 45/178 (25%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR--LENGTYVAIRSLTFLKKYSIQNLK-------VR---- 486
             ++ ++ +GEG+ GK++K R     G +VA      LK+  +Q  +       +R    
Sbjct: 11  QQYECVAEIGEGAYGKVFKARDLKNGGRFVA------LKRVRVQTGEEGMPLSTIREVAV 64

Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH----LSENCPEN 542
           L  L   +HP++V L    + + S+ D    K+ LV+E++              +  PE 
Sbjct: 65  LRHLETFEHPNVVRL--FDVCTVSRTDRE-TKLTLVFEHVD------QDLTTYLDKVPEP 115

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
            +       ++  + + + FLH        S+R     L   NIL+      KL+D+G
Sbjct: 116 GVPTETIKDMMFQLLRGLDFLH--------SHRVVHRDLKPQNILVTSSGQIKLADFG 165

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 57/179 (31%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDF--------- 489
             ++ +  +GEGS G ++K R  + G  VAI+             K              
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIK-------------KFLESEDDPVIKKIA 49

Query: 490 ------LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCPE 541
                 L +L+HP+LV+LL               ++ LV+EY  +             PE
Sbjct: 50  LREIRMLKQLKHPNLVNLLEVFRRK--------RRLHLVFEYCDHTVLHELDRYQRGVPE 101

Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
           +++K     +I     +AV+F H         +      +   NIL+ +H + KL D+G
Sbjct: 102 HLVK-----SITWQTLQAVNFCH--------KHNCIHRDVKPENILITKHSVIKLCDFG 147

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 35/168 (20%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G      +   R    G YV +R  +L       +  L+  L       HP++V      
Sbjct: 36  GFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATF 95

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
           I          N++++V  ++  GS       H  +   E  +       IL GV KA+ 
Sbjct: 96  IAD--------NELWVVTSFMAYGSAKDLICTHFMDGMNELAIA-----YILQGVLKALD 142

Query: 562 FLHS------SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH 603
           ++H       SV +          +IL+       LS    ++ M  H
Sbjct: 143 YIHHMGYVHRSVKAS---------HILISVDGKVYLSGLRSNLSMISH 181

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 55/349 (15%), Positives = 113/349 (32%), Gaps = 94/349 (26%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPH 497
            +F+ +  MG G  G +++ +   +    AI+ +    +  + + +   +  L+KL+HP 
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 65

Query: 498 LV-------------------------------------------------SLLGHCIES 508
           +V                                                          
Sbjct: 66  IVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVG 125

Query: 509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS-V 567
             Q  S    +++  +     + +  ++  C     +    L I I +A+AV FLHS  +
Sbjct: 126 QLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGL 185

Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRT- 625
           +     +R L  +NI      + K+ D+G+   M++ E+ +       A         T 
Sbjct: 186 M-----HRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240

Query: 626 ---SAENVVIVVDIQRTKLEDDVYNF-------GFILLESLVGPIVTGKGEAFLLNEMAS 675
              S E            +  + Y+        G IL E L+    T      ++ ++  
Sbjct: 241 LYMSPEQ-----------IHGNNYSHKVDIFSLGLILFE-LLYSFSTQMERVRIITDV-- 286

Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                  R +  P++ T    +   +V       + P P+ RP   D++
Sbjct: 287 -------RNLKFPLLFTQKYPQEHMMV----QDMLSPSPTERPEATDII 324

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 42/186 (22%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAI--------RSLTFLKKYSIQNLKVRLDFLS 491
            + ++S +G G+ G ++     E    V +            +++   +  + + +  LS
Sbjct: 25  KYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILS 84

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG-------SYRAHLSENCPENVL 544
           +++H +++ +L    E       N     LV E   +G            L E       
Sbjct: 85  RVEHANIIKVL-DIFE-------NQGFFQLVMEKHGSGLDLFAFIDRHPRLDE------- 129

Query: 545 KWSDRLAILI--GVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIME 601
                LA  I   +  AV +L    I     +R +   NI++ E    KL D+G +  +E
Sbjct: 130 ----PLASYIFRQLVSAVGYLRLKDII----HRDIKDENIVIAEDFTIKLIDFGSAAYLE 181

Query: 602 EHEKLE 607
             +   
Sbjct: 182 RGKLFY 187

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 56/178 (31%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLD----------- 488
             +  L  +GEG+ G +YK +   G   A      LK       K+RL+           
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFA------LK-------KIRLEKEDEGIPSTTI 48

Query: 489 ----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCPEN 542
                L +L+H ++V L  + +           ++ LV+E++                  
Sbjct: 49  REISILKELKHSNIVKL--YDVIHTK------KRLVLVFEHLDQDLKKLLDVCEGGLESV 100

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
             K     + L+ +   + + H          R     L   N+L++     K++D+G
Sbjct: 101 TAK-----SFLLQLLNGIAYCH--------DRRVLHRDLKPQNLLINREGELKIADFG 145

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 57/179 (31%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDF--------- 489
             +++L  +GEGS G + K R  + G  VAI+             K              
Sbjct: 25  EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIK-------------KFLESDDDKMVKKIA 71

Query: 490 ------LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCPE 541
                 L +L+H +LV+LL  C +          + +LV+E++ +               
Sbjct: 72  MREIKLLKQLRHENLVNLLEVCKKK--------KRWYLVFEFVDHTILDDLELFPNGLDY 123

Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
            V++       L  +   + F H        S+      +   NIL+ +  + KL D+G
Sbjct: 124 QVVQ-----KYLFQIINGIGFCH--------SHNIIHRDIKPENILVSQSGVVKLCDFG 169

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 56/178 (31%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDF--------- 489
             +  L  +GEG+   +YKG+       VA      LK       ++RL+          
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVA------LK-------EIRLEHEEGAPCTAI 48

Query: 490 -----LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENCPEN 542
                L  L+H ++V+L  H I            + LV+EY+      Y          +
Sbjct: 49  REVSLLKDLKHANIVTL--HDIIHTE------KSLTLVFEYLDKDLKQYLDDCGNIINMH 100

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDYG 595
            +K       L  + + + + H          +     L   N+L++E    KL+D+G
Sbjct: 101 NVK-----LFLFQLLRGLAYCH--------RQKVLHRDLKPQNLLINERGELKLADFG 145

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 46/181 (25%)

Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD---- 488
           ++K     ++ L F+GEG    +YK R       VA      +KK  + +     D    
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVA------IKKIKLGHRSEAKDGINR 57

Query: 489 -------FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN--GSYRAHLSENC 539
                   L +L HP+++ L               + + LV++++           S   
Sbjct: 58  TALREIKLLQELSHPNIIGL--LDAFGHK------SNISLVFDFMETDLEVIIKDNSLVL 109

Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIAKLSDY 594
             + +K     A ++   + + +LH         +      L  NN+LLDE+ + KL+D+
Sbjct: 110 TPSHIK-----AYMLMTLQGLEYLH--------QHWILHRDLKPNNLLLDENGVLKLADF 156

Query: 595 G 595
           G
Sbjct: 157 G 157

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 30/177 (16%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
           ++F+ L  +G+GS GK+   +  +     A++ +     +++  ++N+   L  +  L+H
Sbjct: 15  DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEH 74

Query: 496 PHLVSLLGHCIESGS-QDDSNTNKVFLVYEYIPNGSYRAHLSENC--PENVLK-WSDRLA 551
           P LV+L        S QD+     +F+V + +  G  R HL +N    E  +K +   L 
Sbjct: 75  PFLVNL------WYSFQDEE---DMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELV 125

Query: 552 ILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
           +      A+ +L +  +I     +R +  +NILLDEH    ++D+ I+ ++    ++
Sbjct: 126 M------ALDYLQNQRII-----HRDMKPDNILLDEHGHVHITDFNIAAMLPRETQI 171

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 27/163 (16%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS--IQNLKVRLDFLSKLQHPHL 498
           F  L  +G+GS G+++KG        VAI+ +  L++    I++++  +  LS+   P++
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIID-LEEAEDEIEDIQQEITVLSQCDSPYV 82

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGV 556
               G  ++          K++++ EY+  GS    L E  P  E  +       IL  +
Sbjct: 83  TKYYGSYLKD--------TKLWIIMEYLGGGSAL-DLLEPGPLDETQIA-----TILREI 128

Query: 557 AKAVHFLHSS-VISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
            K + +LHS   I     +R +   N+LL EH   KL+D+G++
Sbjct: 129 LKGLDYLHSEKKI-----HRDIKAANVLLSEHGEVKLADFGVA 166

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 24/148 (16%)

Query: 134 IPSGISRLVRLQTLTMDTNFFD--DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT 191
           + + +S L   + L + TN  +   ++      + NL +LSL  N +K +  +      T
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSL----SGMENLRILSLGRNLIK-KIENLDAVADT 94

Query: 192 LTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS-----GLPLMPKGLVTVLLSRNLF 246
           L ++ +S N+++  L  +  L +L VL +  NK+ +      L  + K L  +LL+ N  
Sbjct: 95  LEELWISYNQIA-SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK-LEDLLLAGNPL 152

Query: 247 SGAIPQQFGE----------LAQLQHLD 264
                +              L  L+ LD
Sbjct: 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 162 WDSLSNLTVLSLKSNQLKGQFP------SSICRIATLTDIAMSNNELSGKLPDMSALTSL 215
           ++   ++     +  +L G  P      +++  +     +A+S N +  K+  +S + +L
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENL 72

Query: 216 HVLDLRENKLD--SGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFN---DL 270
            +L L  N +     L  +   L  + +S N  +        +L  L+ L +S N   + 
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNW 130

Query: 271 SGIPPSVLFSLPNISYLHLASN 292
             I    L +L  +  L LA N
Sbjct: 131 GEI--DKLAALDKLEDLLLAGN 150

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 36/186 (19%)

Query: 439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKL-Q 494
           T  F  L  +G G  G ++K     +G   AI+            QN    +   + L Q
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQ 69

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC------PENVLKWSD 548
           H H+V       E         + + +  EY   GS    +SEN        E  LK   
Sbjct: 70  HSHVVRYFSAWAED--------DHMLIQNEYCNGGSLADAISENYRIMSYFKEAELK--- 118

Query: 549 RLAILIGVAKAVHFLHSSV-----ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEH 603
              +L+ V + + ++HS       I  S        NI +    I   +           
Sbjct: 119 --DLLLQVGRGLRYIHSMSLVHMDIKPS--------NIFISRTSIPNAASEEGDEDDWAS 168

Query: 604 EKLEAK 609
            K+  K
Sbjct: 169 NKVMFK 174

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 53.7 bits (128), Expect = 9e-08
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 48/196 (24%)

Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLENGTYVAI-----------------RSLTFLKKYSI 480
            T        +GEG  G++++    + T VAI                      L +  I
Sbjct: 18  PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIII 76

Query: 481 QNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ----------------------DDSNTNK 518
                 L      +    + L       GS                       D    ++
Sbjct: 77  SKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQ 136

Query: 519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LT 577
           +F+V E+   G       E     +   +   +IL  +  ++    +S+    F +R L 
Sbjct: 137 LFIVLEFEFGGI----DLEQMRTKLSSLATAKSILHQLTASLAVAEASL---RFEHRDLH 189

Query: 578 TNNILLDEHRIAKLSD 593
             N+LL +  + KL  
Sbjct: 190 WGNVLLKKTSLKKLHY 205

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 38/170 (22%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRL----DFLSKLQHPHLVSLLG 503
           GEG+ G++           VA++    +      +    +         L H ++V   G
Sbjct: 16  GEGAYGEVQLAVNRVTEEAVAVK---IVDMKRAVDCPENIKKEICINKMLNHENVVKFYG 72

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDRLAI-----LIGV 556
           H    G+         +L  EY   G     +  +   PE         A      L+  
Sbjct: 73  H-RREGN-------IQYLFLEYCSGGELFDRIEPDIGMPEPD-------AQRFFHQLMA- 116

Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
              V +LH   I    ++R +   N+LLDE    K+SD+G++ +   + +
Sbjct: 117 --GVVYLHGIGI----THRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 28/192 (14%), Positives = 50/192 (26%), Gaps = 30/192 (15%)

Query: 433 EELKEATNNFDSLSFMGEGSRGKLYKGR------LENGTYVAIRSL---TFLKKYSIQNL 483
            E +  +        +GEG+  ++Y+         +N     ++        + Y    L
Sbjct: 58  TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQL 117

Query: 484 KVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV 543
             RL           +      +          N   LV E    G+    ++       
Sbjct: 118 MERLK---PSMQHMFMKFYSAHLFQ--------NGSVLVGELYSYGTLLNAINLYKNTPE 166

Query: 544 LKWSDRLAILIG--VAKAVHFLHSSVI--------SGSFSNRLTTNNILLDEHRIAKLSD 593
                 L I     +   +  +H   I        +    N     +   D      L D
Sbjct: 167 KVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALID 226

Query: 594 YGISIIMEEHEK 605
            G SI M+   K
Sbjct: 227 LGQSIDMKLFPK 238

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 32/328 (9%), Positives = 77/328 (23%), Gaps = 62/328 (18%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPHLVSLLGH 504
             G R  ++  R +E     A++  T   + S   ++ L       ++L           
Sbjct: 71  RVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDR 130

Query: 505 C------------------IESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENCPEN 542
                                S  QDD       L+     +      +           
Sbjct: 131 RRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPA-ASVDLELLFSTLDFVYVFRG 189

Query: 543 VLKWSDRLAILIGVAKAVHFLHSS-VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
                    +   + +    L S  ++ G      T +N+ +       L D        
Sbjct: 190 DEGILALHILTAQLIRLAANLQSKGLVHG----HFTPDNLFIMPDGRLMLGDVSALW--- 242

Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--- 658
                   G    A    +     +    +       T    + +  G  +         
Sbjct: 243 ------KVGTRGPASSVPVT---YAPREFLNASTATFTH-ALNAWQLGLSIYRVWCLFLP 292

Query: 659 --PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
              +  G   ++    +   G+         P+          +++     + +  +   
Sbjct: 293 FGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPL-----PDFVKTLI----GRFLNFDRRR 343

Query: 717 RPSFEDVL---WNLQYAAQVQATADADQ 741
           R    + +     LQ   ++ ++    Q
Sbjct: 344 RLLPLEAMETPEFLQLQNEISSSLSTGQ 371

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 38/170 (22%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRL----DFLSKLQHPHLVSLLG 503
           GEG+ G++           VA++    +      +    +         L H ++V   G
Sbjct: 16  GEGAYGEVQLAVNRVTEEAVAVK---IVDMKRAVDCPENIKKEICINKMLNHENVVKFYG 72

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDRLAI-----LIGV 556
           H    G+         +L  EY   G     +  +   PE         A      L+  
Sbjct: 73  H-RREGN-------IQYLFLEYCSGGELFDRIEPDIGMPEPD-------AQRFFHQLMA- 116

Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
              V +LH   I    ++R +   N+LLDE    K+SD+G++ +   + +
Sbjct: 117 --GVVYLHGIGI----THRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 34/179 (18%)

Query: 432 LEELKEATNN------FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK 484
           L++L E +        FD L  +GEGS G +YK    E G  VAI+ +       +Q + 
Sbjct: 15  LKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD--LQEII 72

Query: 485 VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL 544
             +  + +   PH+V   G   ++          +++V EY   GS    +        L
Sbjct: 73  KEISIMQQCDSPHVVKYYGSYFKN--------TDLWIVMEYCGAGSVSDIIRLR--NKTL 122

Query: 545 KWSDRLAILIGVAKAVHFLHS-SVI-----SGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
              +   IL    K + +LH    I     +G         NILL+    AKL+D+G++
Sbjct: 123 TEDEIATILQSTLKGLEYLHFMRKIHRDIKAG---------NILLNTEGHAKLADFGVA 172

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 38/170 (22%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNL-----KVR--LDFLSKLQHPHLVS 500
           GEGS GK+ +    E     A++    LKK  ++ +      V+  +  L +L+H +++ 
Sbjct: 14  GEGSYGKVKEVLDSETLCRRAVK---ILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQ 70

Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR--AHLSENCPENVLKWSDRLAI-----L 553
           L+   +      +    K+++V EY   G       + E       ++    A      L
Sbjct: 71  LV-DVL-----YNEEKQKMYMVMEYCVCGMQEMLDSVPEK------RFPVCQAHGYFCQL 118

Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEE 602
           I     + +LHS  I     ++ +   N+LL      K+S  G++  +  
Sbjct: 119 ID---GLEYLHSQGI----VHKDIKPGNLLLTTGGTLKISALGVAEALHP 161

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 39/173 (22%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR------LDFLSKLQHPHLVSL 501
           GEGS GK+      +    VA++   F+ +  ++   +       + +L  L+HPH++ L
Sbjct: 18  GEGSFGKVKLATHYKTQQKVALK---FISRQLLKKSDMHMRVEREISYLKLLRHPHIIKL 74

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK--- 558
               I +          + +V EY   G    ++ E           R+    G      
Sbjct: 75  Y-DVITT-------PTDIVMVIEYA-GGELFDYIVEK---------KRMTEDEGRRFFQQ 116

Query: 559 ---AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
              A+ + H   I     +R L   N+LLD++   K++D+G+S IM +   L+
Sbjct: 117 IICAIEYCHRHKI----VHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLK 165

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 26/149 (17%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKI----HRLSSLELLDMSSNFLFGAIPS--GISRLVR 143
            T     R L L    I       I      L   + +D S N     I    G   L R
Sbjct: 15  YTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRR 65

Query: 144 LQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT---LTDIAMSNN 200
           L+TL ++ N           +L +LT L L +N L       +  +A+   LT + +  N
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRN 123

Query: 201 ELSGKLPD-----MSALTSLHVLDLRENK 224
            ++          +  +  + VLD ++ K
Sbjct: 124 PVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 199 NNELSGKLPDMSALTSLHVLDLRENKLDS--GLPLMPKGLVTVLLSRNLFSGAIP--QQF 254
             EL  +    +       LDLR  K+     L         +  S N     I     F
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE----IRKLDGF 60

Query: 255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
             L +L+ L ++ N +  I   +  +LP+++ L L +N L 
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 28/167 (16%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR--LDFLSKLQHPHLVSLLGHC 505
           G G+ G     R       VA++   ++++ +  +  V+  +     L+HP++V      
Sbjct: 29  GSGNFGVARLMRDKLTKELVAVK---YIERGAAIDENVQREIINHRSLRHPNIVRFK-EV 84

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDRLAILIGVAKAVHFL 563
           I +          + ++ EY   G     +       E+  ++  +  +       V + 
Sbjct: 85  ILT-------PTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLS-----GVSYC 132

Query: 564 HSSVISGSFSNR-LTTNNILLDEHRIA--KLSDYGISIIMEEHEKLE 607
           HS  I     +R L   N LLD       K+ D+G S     H + +
Sbjct: 133 HSMQI----CHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPK 175

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 30/134 (22%)

Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLREN 223
           + S++  L L +++      S+  ++  LTD                    L  L     
Sbjct: 15  TPSDVKELVLDNSR------SNEGKLEGLTD----------------EFEELEFLSTINV 52

Query: 224 KLDS--GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFN---DLSGIPPSVL 278
            L S   LP + K L  + LS N  SG +     +   L HL+LS N   DLS I    L
Sbjct: 53  GLTSIANLPKLNK-LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI--EPL 109

Query: 279 FSLPNISYLHLASN 292
             L N+  L L + 
Sbjct: 110 KKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 92  RLTTLRVLSLVSLGI-WGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD 150
             + ++ L L +     G L         LE L   +  L  +I + + +L +L+ L + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELS 72

Query: 151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT---LTDIAMSNNELSGKLP 207
            N     +    +   NLT L+L  N++K    S+I  +     L  + + N E++  L 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNCEVT-NLN 129

Query: 208 D-----MSALTSLHVLD 219
           D        L  L  LD
Sbjct: 130 DYRENVFKLLPQLTYLD 146

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 31/168 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQHPH 497
           ++F+ +S +G G+ G ++K     +G  +A + +    K +I+N  +R L  L +   P+
Sbjct: 33  DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 92

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDRLAILIG 555
           +V   G     G        ++ +  E++  GS    L +    PE +L       + I 
Sbjct: 93  IVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG-----KVSIA 139

Query: 556 VAKAVHFLHSSV------ISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           V K + +L          +  S        NIL++     KL D+G+S
Sbjct: 140 VIKGLTYLREKHKIMHRDVKPS--------NILVNSRGEIKLCDFGVS 179

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 34/168 (20%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPH 497
           F  L  +G GS G +Y  R + N   VAI+ +++  K S    Q++   + FL KL+HP+
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIG 555
            +   G  +          +  +LV EY    +         P  E  +      A+  G
Sbjct: 116 TIQYRGCYLRE--------HTAWLVMEYCLGSASDLLEVHKKPLQEVEIA-----AVTHG 162

Query: 556 VAKAVHFLHSS-VI-----SGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
             + + +LHS  +I     +G         NILL E  + KL D+G +
Sbjct: 163 ALQGLAYLHSHNMIHRDVKAG---------NILLSEPGLVKLGDFGSA 201

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 32/172 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPH 497
           ++++    +G G+   +           VAI+ +   K   S+  L   +  +S+  HP+
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL------A 551
           +VS     +          ++++LV + +  GS    + ++        S  L       
Sbjct: 75  IVSYYTSFVVK--------DELWLVMKLLSGGSVL-DIIKHIVAKGEHKSGVLDESTIAT 125

Query: 552 ILIGVAKAVHFLHS-SVI-----SGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
           IL  V + + +LH    I     +G         NILL E    +++D+G+S
Sbjct: 126 ILREVLEGLEYLHKNGQIHRDVKAG---------NILLGEDGSVQIADFGVS 168

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLREN 223
             S + +      +L+ + P+++     L  +    +         +   +L  L L   
Sbjct: 4   GSSGMDMKRRIHLELRNRTPAAV---RELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINV 59

Query: 224 KLDS--GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPP-SVLFS 280
            L S   LP +PK L  + LS N   G +     +L  L HL+LS N L  I     L  
Sbjct: 60  GLISVSNLPKLPK-LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK 118

Query: 281 LPNISYLHLASN 292
           L  +  L L + 
Sbjct: 119 LECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 93  LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN 152
           +  L VL        G +        +LE L + +  L     S + +L +L+ L +  N
Sbjct: 26  VREL-VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN 81

Query: 153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA---TLTDIAMSNNELSGKLPD- 208
                +    + L NLT L+L  N+LK    S++  +     L  + + N E++  L D 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVT-NLNDY 138

Query: 209 ----MSALTSLHVLDLRENK 224
                  L  L  LD  + +
Sbjct: 139 RESVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 218 LDLRENKLDSGLPLMPKGLVT-VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS 276
           +D++           P  +   VL +     G I     E   L+ L L    L  +  S
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S 65

Query: 277 VLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
            L  LP +  L L+ N + G L         L  ++
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 34/171 (19%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G G+ G++   R        AI+ +  T +   S   L   +  L  L HP+++ L    
Sbjct: 46  GSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFF 105

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGS------YRAHLSENCPENVLKWSDRLAILIGVAKA 559
                +D  N    +LV E    G       +R   +E          D   I+  V   
Sbjct: 106 -----EDKRN---YYLVMECYKGGELFDEIIHRMKFNEV---------DAAVIIKQVLSG 148

Query: 560 VHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
           V +LH   I     +R L   N+LL   ++  + K+ D+G+S + E  +K+
Sbjct: 149 VTYLHKHNI----VHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKM 195

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 62/196 (31%)

Query: 449 GEGSRGKLYKGR-LENGTYVAI---------RSLTFLKKYSIQNLKVRLDF--------- 489
           G+GS G +       + TY A+         R   F ++   +  +              
Sbjct: 22  GKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIE 81

Query: 490 --------LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SYRAH--LS 536
                   L KL HP++V L    +     DD N + +++V+E +  G          LS
Sbjct: 82  QVYQEIAILKKLDHPNVVKL--VEV----LDDPNEDHLYMVFELVNQGPVMEVPTLKPLS 135

Query: 537 ENCPENVLKWSDRLAI-----LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAK 590
           E+            A      LI   K + +LH   I     +R +  +N+L+ E    K
Sbjct: 136 ED-----------QARFYFQDLI---KGIEYLHYQKI----IHRDIKPSNLLVGEDGHIK 177

Query: 591 LSDYGISIIMEEHEKL 606
           ++D+G+S   +  + L
Sbjct: 178 IADFGVSNEFKGSDAL 193

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 59/182 (32%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLD---------- 488
           + +  ++ +GEG+ G++YK         VA      +K       ++RL+          
Sbjct: 34  DRYRRITKLGEGTYGEVYKAIDTVTNETVA------IK-------RIRLEHEEEGVPGTA 80

Query: 489 -----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV 543
                 L +LQH +++ L    +   +      +++ L++EY  N        +  P+  
Sbjct: 81  IREVSLLKELQHRNIIEL--KSVIHHN------HRLHLIFEYAEND--LKKYMDKNPD-- 128

Query: 544 LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILLDEHRIA-----KLSD 593
           +      + L  +   V+F H        S R     L   N+LL     +     K+ D
Sbjct: 129 VSMRVIKSFLYQLINGVNFCH--------SRRCLHRDLKPQNLLLSVSDASETPVLKIGD 180

Query: 594 YG 595
           +G
Sbjct: 181 FG 182

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 48.9 bits (116), Expect = 4e-06
 Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 38/239 (15%)

Query: 387 QSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLE-ELKEATNNFDSL 445
           +    +I Q N  T       A   L+S ++          + F +E EL E        
Sbjct: 25  EELFNRIPQANVRTTSEYMQSAADSLVSTSLW------NTGQPFRVESELGERPRTLVRG 78

Query: 446 SFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK------VRLDFLSKLQHPH- 497
           + +G+       +    E G    +    F ++     +K      +RL  L  +++   
Sbjct: 79  TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQ 138

Query: 498 ------------LVSLLGHCI---ESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENC 539
                       LV              + D      F +Y  + +         LS + 
Sbjct: 139 AKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSS 198

Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSS-VISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
               L    RL + + V + +  LH   ++       L   +I+LD+     L+ +   
Sbjct: 199 THKSLVHHARLQLTLQVIRLLASLHHYGLVHT----YLRPVDIVLDQRGGVFLTGFEHL 253

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 35/172 (20%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
           G+GS G++   +    G   A++ +      +K   ++L   +  L +L HP+++ L   
Sbjct: 35  GKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEF 94

Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGS------YRAHLSENCPENVLKWSDRLAILIGVAK 558
                 +D       +LV E    G        R   SE          D   I+  V  
Sbjct: 95  F-----EDKGY---FYLVGEVYTGGELFDEIISRKRFSEV---------DAARIIRQVLS 137

Query: 559 AVHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
            + ++H + I     +R L   N+LL    +    ++ D+G+S   E  +K+
Sbjct: 138 GITYMHKNKIV----HRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKM 185

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 51/173 (29%)

Query: 449 GEGSRGKLYKGR---LENGTYVAIRSLTFLKKYSIQNL---KVR-LDFLSKLQHPHLVSL 501
           G G+ G +YK +    ++    A      LK+     +     R +  L +L+HP+++SL
Sbjct: 30  GRGTYGHVYKAKRKDGKDDKDYA------LKQIEGTGISMSACREIALLRELKHPNVISL 83

Query: 502 LGHCIESGSQDDSNTNKVFLVYEYI----------PNGSYRAHLSENCPENVLKWSDRLA 551
               +           KV+L+++Y              S         P  ++K     +
Sbjct: 84  QKVFLSHAD------RKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVK-----S 132

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-----LTTNNILL----DEHRIAKLSDYG 595
           +L  +   +H+LH        +N      L   NIL+     E    K++D G
Sbjct: 133 LLYQILDGIHYLH--------ANWVLHRDLKPANILVMGEGPERGRVKIADMG 177

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 5e-06
 Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 34/181 (18%)

Query: 107 WGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDW--WDS 164
           W    D    L ++ LL+         +  G      L++L + +    D+V +      
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 165 LSNLTVLSL---KSNQLKGQFPSSICRIA------TLTDIAMSNNELSGK----LPDMSA 211
           L NL  L L     +       +    +        L  + + + E          +   
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 212 LTSLHVLDLRENKL-DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDL 270
           L  L  +D+    L D G                     +     ++  L+ +++ +N L
Sbjct: 278 LPQLETMDISAGVLTDEGAR------------------LLLDHVDKIKHLKFINMKYNYL 319

Query: 271 S 271
           S
Sbjct: 320 S 320

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 30/241 (12%), Positives = 69/241 (28%), Gaps = 43/241 (17%)

Query: 384 RQEQSTRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFD 443
            +      +   +   +   S V  +     Q  ++ ++     RT     +        
Sbjct: 34  NRIPQANVRTTSEYMQSAADSLVSTSLWNTGQPFRVESELGERPRTLVRGTV-------- 85

Query: 444 SLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK------VRLDFLSKLQHP 496
               +G+       +    E G    +    F ++     +K      +RL  L  +++ 
Sbjct: 86  ----LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQ 141

Query: 497 H-------------LVSLLGHCI---ESGSQDDSNTNKVFLVYEYI--PNGSYRAHLSEN 538
                         LV              + D      F +Y  +     ++   L  +
Sbjct: 142 KQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSH 201

Query: 539 CPEN-VLKWSDRLAILIGVAKAVHFLHSS-VISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
              +  L    RL + + V + +  LH   ++       L   +I+LD+     L+ +  
Sbjct: 202 SSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT----YLRPVDIVLDQRGGVFLTGFEH 257

Query: 597 S 597
            
Sbjct: 258 L 258

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 34/171 (19%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G+GS G++ K +        A++ +     K      +   ++ L KL HP+++ L    
Sbjct: 31  GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEIL 90

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGS------YRAHLSENCPENVLKWSDRLAILIGVAKA 559
                +D S+    ++V E    G        R   SE+         D   I+  V   
Sbjct: 91  -----EDSSS---FYIVGELYTGGELFDEIIKRKRFSEH---------DAARIIKQVFSG 133

Query: 560 VHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
           + ++H   I     +R L   NILL   ++    K+ D+G+S   +++ K+
Sbjct: 134 ITYMHKHNI----VHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM 180

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 19/163 (11%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
           N F+ L  +G+G+ GK+   +    G Y A++ L     + K  + +       L   +H
Sbjct: 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRH 207

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           P L +L     +   Q      ++  V EY   G    HLS    E V    DR      
Sbjct: 208 PFLTAL-----KYSFQTHD---RLCFVMEYANGGELFFHLSR---ERVFS-EDRARFYGA 255

Query: 556 -VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            +  A+ +LHS          L   N++LD+    K++D+G+ 
Sbjct: 256 EIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLC 296

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 388 STRPKIVQDNAPTGVSSEVLANARLISQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSF 447
           S RP+            +  A   +     K G++ +    T      +    ++     
Sbjct: 2   SGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKV 61

Query: 448 MGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQHPHLVSLLGHC 505
           +G GS G +Y+ +L ++G  VAI+ +   K++     K R L  + KL H ++V L  + 
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF-----KNRELQIMRKLDHCNIVRLR-YF 115

Query: 506 IESGSQDDSNTNKVFLVYEYIP 527
             S S +  +   + LV +Y+P
Sbjct: 116 FYS-SGEKKDEVYLNLVLDYVP 136

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 50/300 (16%), Positives = 97/300 (32%), Gaps = 58/300 (19%)

Query: 441 NFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLV 499
           +F     +G G+ G +    + +   VA++    +           +  L +  +HP+++
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKR---ILPECFSFADREVQLLRESDEHPNVI 81

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA--ILIGVA 557
                C E   +D       ++  E     +    L E   +            +L    
Sbjct: 82  RY--FCTE---KDRQF---QYIAIELCA-AT----LQEYVEQKDFAHLGLEPITLLQQTT 128

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDE-----HRIAKLSDYGISIIMEEHEKLEAKGE 611
             +  LHS  I     +R L  +NIL+          A +SD+G+   +       ++  
Sbjct: 129 SGLAHLHSLNI----VHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRS 184

Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN 671
           G     G++      A  ++     +      D+++ G +    +        G      
Sbjct: 185 GVPGTEGWI------APEMLSEDCKENPTYTVDIFSAGCVFYYVISE------GSHP--- 229

Query: 672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT-------NKCICPEPSSRPSFEDVL 724
               FG    R+     ++L  CS + L               K I  +P  RPS + VL
Sbjct: 230 ----FGKSLQRQAN---ILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVL 282

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 28/170 (16%), Positives = 68/170 (40%), Gaps = 34/170 (20%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           G G+ G +++      G   A + +    +   + ++  +  +S L+HP LV+L      
Sbjct: 166 GTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF-- 223

Query: 508 SGSQDDSNTNKVFLVYEYIPNG-------SYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
              +DD+    + ++YE++  G            +SE+     ++      +     K +
Sbjct: 224 ---EDDNE---MVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMR-----QVC----KGL 268

Query: 561 HFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
             +H +       +  L   NI+      + + KL D+G++  ++  + +
Sbjct: 269 CHMHENNY----VHLDLKPENIMFTTKRSNEL-KLIDFGLTAHLDPKQSV 313

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 32/170 (18%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G GS G++            A + +       +   K  ++ +  L HP+++ L     
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETF- 75

Query: 507 ESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
               +D+++   ++LV E    G       ++    E         SD   I+  V  AV
Sbjct: 76  ----EDNTD---IYLVMELCTGGELFERVVHKRVFRE---------SDAARIMKDVLSAV 119

Query: 561 HFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
            + H   +    ++R L   N L          KL D+G++   +  + +
Sbjct: 120 AYCHKLNV----AHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM 165

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 43/178 (24%), Positives = 64/178 (35%), Gaps = 50/178 (28%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLK----VRL--DFLSK 492
            +F     +GEGS   +   R        AI+ L   +K  I        V    D +S+
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKIL---EKRHIIKENKVPYVTRERDVMSR 86

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL------SENCP-----E 541
           L HP  V L         QDD    K++    Y  NG    ++       E C      E
Sbjct: 87  LDHPFFVKLYFTF-----QDDE---KLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAE 138

Query: 542 NVLKWSDRLAILIGVAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
            V               A+ +LH   +I     +R L   NILL+E    +++D+G +
Sbjct: 139 IVS--------------ALEYLHGKGII-----HRDLKPENILLNEDMHIQITDFGTA 177

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 489 FLSKLQHPHLVSLLGHCIESGSQDDSNTNKV-FLVYEYIPNGSYRAHLSENCPENVLKWS 547
           FL+++ HP +V +           D + + V ++V EY+   S +    +  P      +
Sbjct: 132 FLAEVVHPSIVQI----FNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLP-----VA 182

Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
           + +A L+ +  A+ +LHS    G   N L   NI+L E ++ KL D G 
Sbjct: 183 EAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEEQL-KLIDLGA 227

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 34/171 (19%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G+GS G++ K +        A++ +     K      +   ++ L KL HP+++ L    
Sbjct: 31  GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEIL 90

Query: 506 IESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAILIGVAKA 559
                +D S+    ++V E    G        R   SE          D   I+  V   
Sbjct: 91  -----EDSSS---FYIVGELYTGGELFDEIIKRKRFSE---------HDAARIIKQVFSG 133

Query: 560 VHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
           + ++H   I     +R L   NILL   ++    K+ D+G+S   +++ K+
Sbjct: 134 ITYMHKHNI----VHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM 180

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 22/112 (19%)

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
           + L HP +V++     ++G  +       ++V EY+   + R  +    P   +     +
Sbjct: 67  AALNHPAIVAVY----DTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAI 119

Query: 551 AILIGVAKAVHFLHSSVI------SGSFSNRLTTNNILLDEHRIAKLSDYGI 596
            ++    +A++F H + I                 NI++      K+ D+GI
Sbjct: 120 EVIADACQALNFSHQNGIIHRDVKPA---------NIMISATNAVKVMDFGI 162

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 36/173 (20%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHP 496
            +   L  +G G+ G + K     +G  +A++ +   + +   + L + LD + +    P
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCP 81

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS------YRAHLSENCPENVLKWSDRL 550
           ++V   G     G          ++  E +            + L +  PE +L      
Sbjct: 82  YIVQFYGALFREG--------DCWICMELMSTSFDKFYKYVYSVLDDVIPEEILG----- 128

Query: 551 AILIGVAKAVHFLHSSV------ISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
            I +   KA++ L  ++      I  S        NILLD     KL D+GIS
Sbjct: 129 KITLATVKALNHLKENLKIIHRDIKPS--------NILLDRSGNIKLCDFGIS 173

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQHPHLVSLLGHCIE 507
           G GS G +++ +L     VAI+ +   K++     K R L  +  ++HP++V L      
Sbjct: 49  GNGSFGVVFQAKLVESDEVAIKKVLQDKRF-----KNRELQIMRIVKHPNVVDLK-AFFY 102

Query: 508 SGSQDDSNTNKVFLVYEYIP 527
           S + D  +   + LV EY+P
Sbjct: 103 S-NGDKKDEVFLNLVLEYVP 121

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 34/171 (19%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLT--FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G+G+   + +      G   A + +    L     Q L+       KLQHP++V L    
Sbjct: 15  GKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI 74

Query: 506 IESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAILIGVAKA 559
                Q++S     +LV++ +  G        R   SE         +D    +  + ++
Sbjct: 75  -----QEESF---HYLVFDLVTGGELFEDIVAREFYSE---------ADASHCIQQILES 117

Query: 560 VHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
           + + HS+ I     +R L   N+LL    +    KL+D+G++I + + E  
Sbjct: 118 IAYCHSNGI----VHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW 164

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 34/170 (20%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G G+   +Y+ +        A++ L   K    + ++  +  L +L HP+++ L     
Sbjct: 61  LGRGATSIVYRCKQKGTQKPYALKVL--KKTVDKKIVRTEIGVLLRLSHPNIIKLKEIF- 117

Query: 507 ESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
               +      ++ LV E +  G        + + SE          D    +  + +AV
Sbjct: 118 ----ETP---TEISLVLELVTGGELFDRIVEKGYYSE---------RDAADAVKQILEAV 161

Query: 561 HFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
            +LH + I     +R L   N+L          K++D+G+S I+E    +
Sbjct: 162 AYLHENGI----VHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLM 207

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 41/177 (23%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--------TFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           G G+ G++      +    VAI+ +        +  +     N++  ++ L KL HP ++
Sbjct: 19  GSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCII 78

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAIL 553
            +     +            ++V E +  G           L E   +          +L
Sbjct: 79  KIKNF-FD--------AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFY-----QML 124

Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
                AV +LH + I     +R L   N+LL   +E  + K++D+G S I+ E   +
Sbjct: 125 ----LAVQYLHENGII----HRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM 173

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 41/177 (23%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--------TFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           G G+ G++      +    VAIR +        +  +     N++  ++ L KL HP ++
Sbjct: 144 GSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCII 203

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAIL 553
            +             +    ++V E +  G           L E         +      
Sbjct: 204 KIKNFF---------DAEDYYIVLELMEGGELFDKVVGNKRLKE---------ATCKLYF 245

Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
             +  AV +LH + I     +R L   N+LL   +E  + K++D+G S I+ E   +
Sbjct: 246 YQMLLAVQYLHENGII----HRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM 298

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 26/166 (15%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHP 496
           N+ ++L  MG G+ G+++K R  + G  +A++ +     K   + + + LD + K    P
Sbjct: 25  NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCP 84

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR--AHLSENCPENVLKWSDRLAILI 554
           ++V   G  I +          VF+  E +   + +    +    PE +L       + +
Sbjct: 85  YIVQCFGTFITNT--------DVFIAMELMGTCAEKLKKRMQGPIPERILG-----KMTV 131

Query: 555 GVAKAVHFLHS--SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
            + KA+++L     VI      R +  +NILLDE    KL D+GIS
Sbjct: 132 AIVKALYYLKEKHGVIH-----RDVKPSNILLDERGQIKLCDFGIS 172

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 32/168 (19%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
           +G G+  +++  +    G   A++ +     +   +L+  +  L K++H ++V+L     
Sbjct: 17  LGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDI-Y 75

Query: 507 ESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAILIGVAKAV 560
           ES       T   +LV + +  G        R   +E          D   ++  V  AV
Sbjct: 76  ES-------TTHYYLVMQLVSGGELFDRILERGVYTE---------KDASLVIQQVLSAV 119

Query: 561 HFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHE 604
            +LH + I     +R L   N+L    +E+    ++D+G+S + +   
Sbjct: 120 KYLHENGI----VHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI 163

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 45/265 (16%), Positives = 82/265 (30%), Gaps = 63/265 (23%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKI-----------HRLSSLELLDMSSNFLFG-----A 133
           +     L +     +   G + D+I            +   L  + +S N  FG      
Sbjct: 56  IASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEP 113

Query: 134 IPSGISRLVRLQTLTMDTNFFDD-------------NVPDWWDSLSNLTVLSLKSNQLKG 180
           +   +S+   L+ L +  N                  V     +   L  +    N+L+ 
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 181 QFPSSICRI----ATLTDIAMSNNELS---GKLPDMSAL---TSLHVLDLRENKL-DSGL 229
                  +       L  + M  N +     +   +  L     L VLDL++N     G 
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 230 PLMPKGL-----VTVL-LSRNLFS--GAIPQQFGEL------AQLQHLDLSFNDLS---- 271
             +   L     +  L L+  L S  GA      +         LQ L L +N++     
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGA--AAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 272 -GIPPSVLFSLPNISYLHLASNMLS 295
             +   +   +P++ +L L  N  S
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFS 316

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 242 SRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            R L   ++P           L L+ N+L+ +PP +L +LP +   HL +N
Sbjct: 17  RRGLTWASLPT--AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 24/187 (12%)

Query: 422 QGSPAYRTF----YLEELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSL---T 473
             S  +  F    +LE      + F     +G G  G+++  ++   G   A + L    
Sbjct: 163 LDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKR 222

Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
             K+   Q   V    L+K+    +VSL  +  E+ +        + LV   +  G  R 
Sbjct: 223 LKKRKGYQGAMVEKKILAKVHSRFIVSLA-YAFETKT-------DLCLVMTIMNGGDIRY 274

Query: 534 HLSENCPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAK 590
           H+  N  E+   + +  AI     +   +  LH   I      R L   N+LLD+    +
Sbjct: 275 HIY-NVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNII----YRDLKPENVLLDDDGNVR 329

Query: 591 LSDYGIS 597
           +SD G++
Sbjct: 330 ISDLGLA 336

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 34/171 (19%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G+G+   + +      G   A + +    L     Q L+       KLQHP++V L    
Sbjct: 38  GKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI 97

Query: 506 IESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAILIGVAKA 559
                Q++S     +LV++ +  G        R   SE         +D    +  + ++
Sbjct: 98  -----QEESF---HYLVFDLVTGGELFEDIVAREFYSE---------ADASHCIQQILES 140

Query: 560 VHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
           + + HS+ I     +R L   N+LL    +    KL+D+G++I + + E  
Sbjct: 141 IAYCHSNGI----VHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW 187

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
           N F     +G+G  G++   ++   G   A + L      K+            L K+  
Sbjct: 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNS 243

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
             +VSL  +  E+          + LV   +  G  + H+  +  +       R      
Sbjct: 244 RFVVSL-AYAYETKD-------ALCLVLTLMNGGDLKFHIY-HMGQAGFP-EARAVFYAA 293

Query: 556 -VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
            +   +  LH   I      R L   NILLD+H   ++SD G+++ + E + 
Sbjct: 294 EICCGLEDLHRERIV----YRDLKPENILLDDHGHIRISDLGLAVHVPEGQT 341

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAI---RSLTFLKKYSIQNLKVRLDFLS 491
           ++  + F      G+G+ G +  G+    G  VAI         +   +Q ++     L+
Sbjct: 19  RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQ----DLA 74

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIP 527
            L HP++V L      +  + D     + +V EY+P
Sbjct: 75  VLHHPNIVQLQ-SYFYTLGERDRRDIYLNVVMEYVP 109

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 38/175 (21%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDF------LSKL-QHPHL 498
           G G    + +      G   A++ +  T  +    Q  +VR         L ++  HPH+
Sbjct: 103 GRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHI 162

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAI 552
           ++L+        +  S    +FLV++ +  G      + +  LSE          +  +I
Sbjct: 163 ITLIDSY-----ESSSF---MFLVFDLMRKGELFDYLTEKVALSE---------KETRSI 205

Query: 553 LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
           +  + +AV FLH++ I     +R L   NILLD++   +LSD+G S  +E  EKL
Sbjct: 206 MRSLLEAVSFLHANNIV----HRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKL 256

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 31/170 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQN-LKVRLDF-LSKLQHP 496
           ++ + +  +G G+ G + K R + +G  +A++ +        Q  L + LD  +  +  P
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSEN--CPENVLKWSDRL 550
             V+  G     G         V++  E + + S    Y+  + +    PE++L      
Sbjct: 67  FTVTFYGALFREG--------DVWICMELM-DTSLDKFYKQVIDKGQTIPEDILG----- 112

Query: 551 AILIGVAKAVHFLHS--SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
            I + + KA+  LHS  SVI     +R +  +N+L++     K+ D+GIS
Sbjct: 113 KIAVSIVKALEHLHSKLSVI-----HRDVKPSNVLINALGQVKMCDFGIS 157

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 32/169 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLK----VRL--DFLSK 492
           + FD +  +G GS G++   +  E+G + A++ L    K  +  LK           L  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL---DKQKVVKLKQIEHTLNEKRILQA 97

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
           +  P LV L         +D+SN   +++V EY+  G   +HL       + ++S+  A 
Sbjct: 98  VNFPFLVKLEFSF-----KDNSN---LYMVMEYVAGGEMFSHLR-----RIGRFSEPHAR 144

Query: 553 LIG--VAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
                +     +LHS  +I      R L   N+L+D+    +++D+G +
Sbjct: 145 FYAAQIVLTFEYLHSLDLIY-----RDLKPENLLIDQQGYIQVTDFGFA 188

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
           N+FD L  +G+G+ GK+   R    G Y A++ L     + K  + +       L   +H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           P L +L         Q     +++  V EY   G    HLS    E V    +R      
Sbjct: 65  PFLTAL--KY---AFQ---THDRLCFVMEYANGGELFFHLSR---ERVFT-EERARFYGA 112

Query: 556 -VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
            +  A+ +LHS  +      R +   N++LD+    K++D+G+ 
Sbjct: 113 EIVSALEYLHSRDVV----YRDIKLENLMLDKDGHIKITDFGLC 152

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 39/176 (22%)

Query: 449 GEGSRGKLYKGR-LENGTYVAI-----RSLTFLKKYSIQNLKVRL----DFLSKL-QHPH 497
           G G    + +          A+               +Q L+       D L K+  HP+
Sbjct: 26  GRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPN 85

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLA 551
           ++ L         + ++     FLV++ +  G      + +  LSE          +   
Sbjct: 86  IIQLKDTY-----ETNTF---FFLVFDLMKKGELFDYLTEKVTLSE---------KETRK 128

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
           I+  + + +  LH   I     +R L   NILLD+    KL+D+G S  ++  EKL
Sbjct: 129 IMRALLEVICALHKLNIV----HRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKL 180

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 34/171 (19%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G+G+   + +   +  G   A   +    L     Q L+        L+HP++V L    
Sbjct: 20  GKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSI 79

Query: 506 IESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSDRLAILIGVAKA 559
                 ++ +    +L+++ +  G        R + SE         +D    +  + +A
Sbjct: 80  -----SEEGH---HYLIFDLVTGGELFEDIVAREYYSE---------ADASHCIQQILEA 122

Query: 560 VHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
           V   H   +     +R L   N+LL    +    KL+D+G++I +E  ++ 
Sbjct: 123 VLHCHQMGV----VHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA 169

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 29/175 (16%), Positives = 68/175 (38%), Gaps = 37/175 (21%)

Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           +G G+ G ++      +G    I+++   + +  ++ ++  ++ L  L HP+++ +    
Sbjct: 30  LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVF 89

Query: 506 IESGSQDDSNTNKVFLVYEYIPNG----------SYRAHLSENCPENVLKWSDRLAILIG 555
                +D  N   +++V E    G          +    LSE              ++  
Sbjct: 90  -----EDYHN---MYIVMETCEGGELLERIVSAQARGKALSEG---------YVAELMKQ 132

Query: 556 VAKAVHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
           +  A+ + HS  +     ++ L   NIL      H   K+ D+G++ + +  E  
Sbjct: 133 MMNALAYFHSQHVV----HKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS 183

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 45/182 (24%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSL-------------TFLKKYSIQNLKVRLDFLSKLQ 494
           G G+ G++   +     +  AI+ +                 +   + +   +  L  L 
Sbjct: 45  GSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLD 104

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG------SYRAHLSENCPENVLKWSD 548
           HP+++ L         +D       +LV E+   G        R    E          D
Sbjct: 105 HPNIIKLFDVF-----EDKKY---FYLVTEFYEGGELFEQIINRHKFDEC---------D 147

Query: 549 RLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHE 604
              I+  +   + +LH   I     +R +   NILL   +     K+ D+G+S    +  
Sbjct: 148 AANIMKQILSGICYLHKHNIV----HRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY 203

Query: 605 KL 606
           KL
Sbjct: 204 KL 205

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 31/174 (17%)

Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCI 506
           +G GS G +       G  VA++ +  +    I  ++++L  L++   HP+++    +C 
Sbjct: 23  LGYGSSGTVVFQGSFQGRPVAVKRML-IDFCDIALMEIKL--LTESDDHPNVIRY--YCS 77

Query: 507 ESGSQDDSNTNKVFLVYEYIPNGS------YRAHLSENCPENVLKWSDRLAILIGVAKAV 560
           E     D     +++  E   N +       +    EN    + K  + +++L  +A  V
Sbjct: 78  E---TTDRF---LYIALELC-NLNLQDLVESKNVSDENLK--LQKEYNPISLLRQIASGV 128

Query: 561 HFLHSSVIS----------GSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
             LHS  I            S S+R T +     E+    +SD+G+   ++  +
Sbjct: 129 AHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQ 182

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 35/179 (19%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSL---TFLKKYSIQNLKVRL 487
           +++++    +F+ L  +G G+ G++   +L       A++ L     LK+      +   
Sbjct: 66  VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREER 125

Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
           D L       + +L  H      QDD   N ++LV +Y   G     LS        K+ 
Sbjct: 126 DVLVNGDSKWITTL--HY---AFQDD---NNLYLVMDYYVGGDLLTLLS--------KFE 169

Query: 548 DRLAILIGVAK--------AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
           DRL     +A+        A+  +H         +R +  +NIL+D +   +L+D+G  
Sbjct: 170 DRL--PEEMARFYLAEMVIAIDSVHQLHYV----HRDIKPDNILMDMNGHIRLADFGSC 222

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           G G+ G +++      G     + +          +K  +  +++L HP L++L     E
Sbjct: 60  GSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDA-FE 118

Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI--GVAKAVHFLHS 565
                     ++ L+ E++  G     L +       K S+   I       + +  +H 
Sbjct: 119 DK-------YEMVLILEFLSGGE----LFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE 167

Query: 566 SVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
             I     +  +   NI+        + K+ D+G++  +   E +
Sbjct: 168 HSI----VHLDIKPENIMCETKKASSV-KIIDFGLATKLNPDEIV 207

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 44/220 (20%)

Query: 118 SSLELLDMSSNFL----FGAIPSGISRL-VRLQTLTMDTNFFDDN-VPDWWDSL----SN 167
           +++  L++S NFL       +   ++ +   +  L +  N F      ++  +     ++
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 168 LTVLSLKSNQLKGQFPSSICRI-----ATLTDIAMSNNELSGKLPDMSAL--------TS 214
           +T L+L+ N L  +    + +I     A +  + +  N L+ K  + + L         S
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK--NCAELAKFLASIPAS 197

Query: 215 LHVLDLRENKLD--------SGLPLMPKGLVTVLLSRNLFSGAIPQQFGEL----AQLQH 262
           +  LDL  N L              +P  +V++ L  N   G   +    L      LQ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 263 LDLSFNDLSGIPP-------SVLFSLPNISYLHLASNMLS 295
           + L ++ +  +         +   ++  I  +      + 
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 18/107 (16%)

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
           +LQ PH+V +     + G  D      +++    I      A L    P   L     +A
Sbjct: 90  RLQEPHVVPIH----DFGEIDGQ----LYVDMRLINGVDLAAMLRRQGP---LAPPRAVA 138

Query: 552 ILIGVAKAVHFLHSS-VISGSFSNR-LTTNNILLDEHRIAKLSDYGI 596
           I+  +  A+   H++        +R +   NIL+     A L D+GI
Sbjct: 139 IVRQIGSALDAAHAAGAT-----HRDVKPENILVSADDFAYLVDFGI 180

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 30/117 (25%)

Query: 190 ATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFS 247
            T   + + +N+++ KL       LT L  LDL  N+L      +P G+           
Sbjct: 30  TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTV----LPAGV----------- 73

Query: 248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC 304
                 F +L QL  L L+ N L  IP     +L +++++ L +N      P D +C
Sbjct: 74  ------FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN------PWDCAC 118

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 31/170 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVR--------LDFL 490
           N+F     +G G  G++Y  R  + G   A++ L   KK                 L  +
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD--KKRIKMKQGETLALNERIMLSLV 246

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
           S    P +V +                K+  + + +  G    HLS         +S+  
Sbjct: 247 STGDCPFIVCM-----SYAFHTPD---KLSFILDLMNGGDLHYHLS-----QHGVFSEAD 293

Query: 551 AILIG--VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
                  +   +  +H+  +      R L   NILLDEH   ++SD G++
Sbjct: 294 MRFYAAEIILGLEHMHNRFVV----YRDLKPANILLDEHGHVRISDLGLA 339

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
                  +G G  G+++K      G  +A + +        + +K  +  +++L H +L+
Sbjct: 90  TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLI 149

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI--GVA 557
            L     ES        N + LV EY+  G     L +   +     ++   IL    + 
Sbjct: 150 QLYD-AFES-------KNDIVLVMEYVDGGE----LFDRIIDESYNLTELDTILFMKQIC 197

Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILL---DEHRIAKLSDYGISIIMEEHEKL 606
           + +  +H   I        L   NIL    D  +I K+ D+G++   +  EKL
Sbjct: 198 EGIRHMHQMYILH----LDLKPENILCVNRDAKQI-KIIDFGLARRYKPREKL 245

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 27/167 (16%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKV------RLDFLSK 492
            +F+ L  +G+GS GK+            A++ L   K   IQ+  V      +      
Sbjct: 341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILK--KDVVIQDDDVECTMVEKRVLALP 398

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
            + P L  L      S  Q     ++++ V EY+  G    H+ +       K       
Sbjct: 399 GKPPFLTQLH-----SCFQ---TMDRLYFVMEYVNGGDLMYHIQQ---VGRFK-EPHAVF 446

Query: 553 LIG-VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
               +A  + FL S  I      R L  +N++LD     K++D+G+ 
Sbjct: 447 YAAEIAIGLFFLQSKGII----YRDLKLDNVMLDSEGHIKIADFGMC 489

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
           S+L H ++VS++    +   +DD      +LV EYI   +   ++  + P   L     +
Sbjct: 66  SQLSHQNIVSMI----DVDEEDDCY----YLVMEYIEGPTLSEYIESHGP---LSVDTAI 114

Query: 551 AILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEE 602
                +   +   H   I     +R +   NIL+D ++  K+ D+GI+  + E
Sbjct: 115 NFTNQILDGIKHAHDMRIV----HRDIKPQNILIDSNKTLKIFDFGIAKALSE 163

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSL---TFLKKYSIQNLKVRL 487
           + +L+    +++ +  +G G+ G++   R        A++ L     +K+          
Sbjct: 61  IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEER 120

Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-PENVLKW 546
           D ++    P +V L         QDD     +++V EY+P G     +S    PE   ++
Sbjct: 121 DIMAFANSPWVVQLFYAF-----QDD---RYLYMVMEYMPGGDLVNLMSNYDVPEKWARF 172

Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
               A ++    A+  +HS      F +R +  +N+LLD+    KL+D+G  
Sbjct: 173 Y--TAEVV---LALDAIHSM----GFIHRDVKPDNMLLDKSGHLKLADFGTC 215

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 41.7 bits (99), Expect = 6e-04
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 32/169 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLK----VRL--DFLSK 492
            +F  L  +G GS G+++  R   NG Y A++ L   KK  +  LK           LS 
Sbjct: 6   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVL---KKEIVVRLKQVEHTNDERLMLSI 62

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
           + HP ++ + G       QD     ++F++ +YI  G   + L         ++ + +A 
Sbjct: 63  VTHPFIIRMWGTF-----QDAQ---QIFMIMDYIEGGELFSLLR-----KSQRFPNPVAK 109

Query: 553 LIG--VAKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
                V  A+ +LHS  +I      R L   NILLD++   K++D+G +
Sbjct: 110 FYAAEVCLALEYLHSKDIIY-----RDLKPENILLDKNGHIKITDFGFA 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	747
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.23
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.23
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.1
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.49
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.12
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.08
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.0
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.95
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.84
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.78
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.59
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.56
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.43
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.33
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.93
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.85
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.81
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.63
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.61
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.56
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.49
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.32
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.29
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.75
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	95.75
3mes_A	424	Choline kinase; malaria, structural genomics, stru	94.18
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	94.18
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	92.79
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	87.11
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	85.17
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	82.87
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	82.72
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	80.62

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.5e-55  Score=455.99  Aligned_cols=263  Identities=23%  Similarity=0.303  Sum_probs=212.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|.+.+.||+|+||+||+|++.      +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.     
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~-----   87 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG-----   87 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-----
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeC-----
Confidence            56778899999999999999853      4789999999876666678899999999999999999999999873     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCC----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENC----------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL  583 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  583 (747)
                         +..+||||||++|+|.++|+..+          ....++|.+++.|+.|||+||+|||+   ++||||||||+|||+
T Consensus        88 ---~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl  161 (299)
T 4asz_A           88 ---DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLV  161 (299)
T ss_dssp             ---SSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEE
T ss_pred             ---CEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEE
Confidence               37899999999999999997532          23569999999999999999999999   889999999999999


Q ss_pred             cCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCC
Q 044236          584 DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVT  662 (747)
Q Consensus       584 d~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~  662 (747)
                      +.++.+||+|||+|+...........          ....++..|+|||++....|+.|+|||||||++|||+| |+.||
T Consensus       162 ~~~~~~Ki~DFGla~~~~~~~~~~~~----------~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf  231 (299)
T 4asz_A          162 GENLLVKIGDFGMSRDVYSTDYYRVG----------GHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPW  231 (299)
T ss_dssp             CGGGCEEECCCSCHHHHTGGGCEEET----------TTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             CCCCcEEECCcccceecCCCCceeec----------CceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999866443322111          11356778999999999999999999999999999999 89998


Q ss_pred             CCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 044236          663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQA  735 (747)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  735 (747)
                      .......+........   .     +..+..+++    ++.+|+.+||+.||++||||.||++.|+.+.+..+
T Consensus       232 ~~~~~~~~~~~i~~~~---~-----~~~p~~~~~----~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p  292 (299)
T 4asz_A          232 YQLSNNEVIECITQGR---V-----LQRPRTCPQ----EVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP  292 (299)
T ss_dssp             TTSCHHHHHHHHHHTC---C-----CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHcCC---C-----CCCCccchH----HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence            7654333322222111   0     111233444    48899999999999999999999999998876543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.6e-54  Score=457.17  Aligned_cols=262  Identities=23%  Similarity=0.307  Sum_probs=206.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|.+.+.||+|+||+||+|++.      +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.     
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~-----  115 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEG-----  115 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-----
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-----
Confidence            46777789999999999999864      4789999999876666778899999999999999999999999873     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCP------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                         ..++||||||++|+|.++++....            ..+++|.+++.|+.|||+||+|||+   .+||||||||+||
T Consensus       116 ---~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NI  189 (329)
T 4aoj_A          116 ---RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNC  189 (329)
T ss_dssp             ---SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGE
T ss_pred             ---CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHhhE
Confidence               378999999999999999975421            2469999999999999999999999   8899999999999


Q ss_pred             eecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCC
Q 044236          582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPI  660 (747)
Q Consensus       582 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~  660 (747)
                      ||+.++.+||+|||+|+.+.........          ...+++..|+|||++....|+.++|||||||++|||+| |+.
T Consensus       190 Ll~~~~~~Ki~DFGla~~~~~~~~~~~~----------~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~  259 (329)
T 4aoj_A          190 LVGQGLVVKIGDFGMSRDIYSTDYYRVG----------GRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQ  259 (329)
T ss_dssp             EEETTTEEEECCCC--------------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             EECCCCcEEEcccccceeccCCCcceec----------CcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCC
Confidence            9999999999999999876443221111          01245678999999999999999999999999999999 899


Q ss_pred             CCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ||.......+........        .+..+..+++    .+.+|+.+||+.||++||||.||+++|+.+.+..
T Consensus       260 Pf~~~~~~~~~~~i~~g~--------~~~~p~~~~~----~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p  321 (329)
T 4aoj_A          260 PWYQLSNTEAIDCITQGR--------ELERPRACPP----EVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP  321 (329)
T ss_dssp             TTCSSCHHHHHHHHHHTC--------CCCCCTTCCH----HHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHcCC--------CCCCcccccH----HHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCC
Confidence            987644333222221111        1112233444    4889999999999999999999999999887654

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=3.1e-54  Score=450.81  Aligned_cols=257  Identities=21%  Similarity=0.292  Sum_probs=205.2

Q ss_pred             hCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ++++..+.||+|+||+||+|++.      +++.||||+++... ....++|.+|+.+|++++|||||+++|+|.+.    
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~----  101 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD----  101 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSS----
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEEC----
Confidence            34566788999999999999862      46899999997533 34467899999999999999999999999873    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCC
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN  579 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~  579 (747)
                          ...+||||||++|+|.++|+.+.+             ...++|..++.|+.|||+||+|||+   .+||||||||+
T Consensus       102 ----~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~  174 (308)
T 4gt4_A          102 ----QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATR  174 (308)
T ss_dssp             ----SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             ----CEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCcccc
Confidence                368999999999999999965321             2459999999999999999999999   78999999999


Q ss_pred             ceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-C
Q 044236          580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-G  658 (747)
Q Consensus       580 NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g  658 (747)
                      ||||++++.+||+|||+|+.+..........          ..+++..|+|||++....|+.++|||||||++|||+| |
T Consensus       175 NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~----------~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g  244 (308)
T 4gt4_A          175 NVLVYDKLNVKISDLGLFREVYAADYYKLLG----------NSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYG  244 (308)
T ss_dssp             GEEECGGGCEEECCSCCBCGGGGGGCBCSSS----------SSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred             ceEECCCCCEEECCcccceeccCCCceeEec----------ccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCC
Confidence            9999999999999999998765433211110          1245678999999999999999999999999999999 8


Q ss_pred             CCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       659 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      +.||.......+.......   ..     +..+..+++    .+.+|+.+||+.||++||||.||+++|+.
T Consensus       245 ~~Pf~~~~~~~~~~~i~~~---~~-----~~~p~~~~~----~~~~li~~C~~~dP~~RPs~~ei~~~L~a  303 (308)
T 4gt4_A          245 LQPYCGYSNQDVVEMIRNR---QV-----LPCPDDCPA----WVYALMIECWNEFPSRRPRFKDIHSRLRA  303 (308)
T ss_dssp             CCTTTTCCHHHHHHHHHTT---CC-----CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHcC---CC-----CCCcccchH----HHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence            8898765443332222211   11     112233444    48899999999999999999999999975

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=7.6e-54  Score=445.74  Aligned_cols=259  Identities=19%  Similarity=0.318  Sum_probs=202.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|.+.+.||+|+||+||+|++++  .||||+++..  .....+.|.+|+++|++++|||||+++|+|.+         +
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~---------~  104 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK---------D  104 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---------S
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC---------C
Confidence            567888999999999999999753  5999998743  34456789999999999999999999999864         2


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      .++||||||++|+|.++|+..  ...++|.+++.|+.|||+||+|||+   .+||||||||+||||+.++.+||+|||+|
T Consensus       105 ~~~iVmEy~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla  179 (307)
T 3omv_A          105 NLAIVTQWCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLA  179 (307)
T ss_dssp             SCEEEEECCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSC
T ss_pred             eEEEEEEcCCCCCHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCc
Confidence            579999999999999999754  4569999999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec---cCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHH
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI---QRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEM  673 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~  673 (747)
                      +..........          ....+|++.|+|||++..   ..|+.|+|||||||++|||+||+.||.... ...+...
T Consensus       180 ~~~~~~~~~~~----------~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~  249 (307)
T 3omv_A          180 TVKSRWSGSQQ----------VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFM  249 (307)
T ss_dssp             BC----------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHH
T ss_pred             eecccCCccee----------ecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHH
Confidence            87643221111          012467889999999853   458999999999999999999999997533 2233222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ........  .  .+.....++    ..+.+|+.+||+.||++||||.||+++|+.+.+
T Consensus       250 ~~~~~~~p--~--~~~~~~~~~----~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~  300 (307)
T 3omv_A          250 VGRGYASP--D--LSKLYKNCP----KAMKRLVADCVKKVKEERPLFPQILSSIELLQH  300 (307)
T ss_dssp             HHTTCCCC--C--STTSCTTSC----HHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred             HhcCCCCC--C--cccccccch----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence            22111100  0  011222334    448899999999999999999999999987754

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.4e-51  Score=434.68  Aligned_cols=251  Identities=18%  Similarity=0.271  Sum_probs=201.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++++.||+|+||+||+|+. .+|+.||||+++..  .....+.+.+|+++|++++|||||++++++.+.       
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-------   95 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEEN-------   95 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-------
T ss_pred             ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEEC-------
Confidence            46899999999999999999994 67999999999753  334567899999999999999999999999874       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +.+|||||||++|+|.++|.... ...+++..+..|+.||+.||+|||+   .+||||||||+||||+.++.+||+|||
T Consensus        96 -~~~yiVmEy~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFG  170 (350)
T 4b9d_A           96 -GSLYIVMDYCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFG  170 (350)
T ss_dssp             -TEEEEEEECCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTT
T ss_pred             -CEEEEEEeCCCCCcHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEcccc
Confidence             48999999999999999997532 3457899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~  674 (747)
                      +|+..........            ..+|++.|+|||++.+..|+.++|||||||++|||+||+.||....... +..+.
T Consensus       171 la~~~~~~~~~~~------------~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~  238 (350)
T 4b9d_A          171 IARVLNSTVELAR------------ACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKII  238 (350)
T ss_dssp             EESCCCHHHHHHH------------HHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred             cceeecCCccccc------------ccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHH
Confidence            9987654322111            1367889999999999999999999999999999999999997654332 22222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .. ..        +.+...+++    .+.+|+.+||+.||++|||+.|++++
T Consensus       239 ~~-~~--------~~~~~~~s~----~~~~li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          239 SG-SF--------PPVSLHYSY----DLRSLVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             HT-CC--------CCCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             cC-CC--------CCCCccCCH----HHHHHHHHHccCChhHCcCHHHHhcC
Confidence            21 10        112223333    48899999999999999999999863

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=9.2e-52  Score=435.34  Aligned_cols=250  Identities=17%  Similarity=0.277  Sum_probs=205.5

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++..+....+.+.+|+++|++++|||||+++++|.+.        +.
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~--------~~  145 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG--------DE  145 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEET--------TE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--------CE
Confidence            5688899999999999999995 57999999999866555567789999999999999999999999874        48


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      +|||||||++|+|.+++.+    ..+++..+..|+.||+.||+|||+   .+||||||||+||||+.++.+||+|||+|+
T Consensus       146 ~~ivmEy~~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~  218 (346)
T 4fih_A          146 LWVVMEFLEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCA  218 (346)
T ss_dssp             EEEEECCCTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEeCCCCCcHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCce
Confidence            9999999999999999875    348999999999999999999999   899999999999999999999999999998


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .+.......            ...+|++.|+|||++....|+.++|||||||++|||++|+.||................
T Consensus       219 ~~~~~~~~~------------~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~  286 (346)
T 4fih_A          219 QVSKEVPRR------------KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNL  286 (346)
T ss_dssp             ECCSSSCCB------------CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSS
T ss_pred             ecCCCCCcc------------cccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCC
Confidence            664322111            12478899999999999999999999999999999999999997654332222221111


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .        +.+  ......+..+.+|+.+||+.||++|||+.|++++
T Consensus       287 ~--------~~~--~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          287 P--------PRL--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             C--------CCC--SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             C--------CCC--CccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            1        100  0112233448899999999999999999999864

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.4e-51  Score=438.16  Aligned_cols=270  Identities=20%  Similarity=0.244  Sum_probs=212.5

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCC-CCcceeeee
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQH-PHLVSLLGH  504 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H-~nIv~l~g~  504 (747)
                      ++.+...++|++.+.||+|+||+||+|++.      .++.||||+++... ....+.|.+|+++|++++| ||||+++|+
T Consensus        57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~  136 (353)
T 4ase_A           57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA  136 (353)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence            333344578999999999999999999853      24689999997543 3445789999999999975 899999999


Q ss_pred             eeccCCCCCCCCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 044236          505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGS  571 (747)
Q Consensus       505 ~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i  571 (747)
                      |.+.+       ..++||||||++|+|.++|+...             ....++|..++.++.|||+||+|||+   .+|
T Consensus       137 ~~~~~-------~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~i  206 (353)
T 4ase_A          137 CTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKC  206 (353)
T ss_dssp             ECCTT-------SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTC
T ss_pred             EEecC-------CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh---CCe
Confidence            97632       36899999999999999997531             13458999999999999999999999   889


Q ss_pred             ccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHH
Q 044236          572 FSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI  651 (747)
Q Consensus       572 vHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvv  651 (747)
                      |||||||+|||++.++.+||+|||+|+.+.........          ...+++..|+|||++....|+.++|||||||+
T Consensus       207 iHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~----------~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~  276 (353)
T 4ase_A          207 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRK----------GDARLPLKWMAPETIFDRVYTIQSDVWSFGVL  276 (353)
T ss_dssp             CCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEE----------TTEEECGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             ecCccCccceeeCCCCCEEECcchhhhhcccCCCceee----------ccccccccccCHHHHhcCCCCCcccEeehHHH
Confidence            99999999999999999999999999876443221111          12456778999999999999999999999999


Q ss_pred             HHHHhh-CCCCCCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          652 LLESLV-GPIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       652 l~Ellt-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      +|||+| |+.||..... ..+........        .+..+..+++    ++.+++.+||+.||++||||.||+++|+.
T Consensus       277 l~El~t~G~~Pf~~~~~~~~~~~~i~~g~--------~~~~p~~~~~----~~~~li~~c~~~dP~~RPt~~eil~~L~~  344 (353)
T 4ase_A          277 LWEIFSLGASPYPGVKIDEEFCRRLKEGT--------RMRAPDYTTP----EMYQTMLDCWHGEPSQRPTFSELVEHLGN  344 (353)
T ss_dssp             HHHHTTTSCCSSTTCCCSHHHHHHHHHTC--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHHcCC--------CCCCCccCCH----HHHHHHHHHcCcChhHCcCHHHHHHHHHH
Confidence            999998 8999875432 22222222111        1112223344    48899999999999999999999999998


Q ss_pred             HHHHh
Q 044236          730 AAQVQ  734 (747)
Q Consensus       730 ~~~~~  734 (747)
                      +.+..
T Consensus       345 llq~~  349 (353)
T 4ase_A          345 LLQAN  349 (353)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            86643

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=2e-51  Score=430.56  Aligned_cols=271  Identities=16%  Similarity=0.233  Sum_probs=201.5

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .+|.+.+.||+|+||+||+|++ +|+.||||+++..... ...+.+|+..+.+++|||||+++|+|.+.+    .....+
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~----~~~~~~   76 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDN----GTWTQL   76 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEEC----SSSEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecC----CCceEE
Confidence            3466778999999999999998 5899999999743322 223345666677899999999999998743    112468


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCcccCCCCCCceeecCCCcEEEecc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV-----ISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      +||||||++|+|.++++..    .++|..+.+++.|+|+||+|||+.+     .++||||||||+|||||.++++||+||
T Consensus        77 ~lV~Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DF  152 (303)
T 3hmm_A           77 WLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCC
T ss_pred             EEEecCCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeC
Confidence            9999999999999999753    5999999999999999999999842     248999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc------CCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ------RTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      |+|+...........        .....++++.|+|||++...      .|+.|+|||||||++|||+||+.|++.....
T Consensus       153 Gla~~~~~~~~~~~~--------~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~  224 (303)
T 3hmm_A          153 GLAVRHDSATDTIDI--------APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY  224 (303)
T ss_dssp             TTCEEEETTTTEESC--------C-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCC
T ss_pred             CCCccccCCCCceee--------ecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccc
Confidence            999876543221110        01124678899999988653      4678999999999999999998776532110


Q ss_pred             ------------hHHHHHhccCcCCccccccccccCCC-CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          669 ------------LLNEMASFGSQDGRRRIVDPVVLTTC-SQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       669 ------------~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                                  ....+......    ...+|.++... +.+....+.+|+.+||+.||++||||.||+++|+.+.+
T Consensus       225 ~~p~~~~~~~~~~~~~~~~~~~~----~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~  297 (303)
T 3hmm_A          225 QLPYYDLVPSDPSVEEMRKVVCE----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  297 (303)
T ss_dssp             CCTTTTTSCSSCCHHHHHHHHTT----SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccchhcccccchHHHHHHHHhc----ccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence                        01111111111    11223222221 23556678999999999999999999999999998765

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.4e-51  Score=430.88  Aligned_cols=257  Identities=18%  Similarity=0.166  Sum_probs=203.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++....     ..+|+.+|++++|||||++++++.+.        +.
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~--------~~  124 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREG--------PW  124 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEET--------TE
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEEC--------CE
Confidence            4677888999999999999994 5799999999975322     24699999999999999999999873        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-cEEEeccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGIS  597 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla  597 (747)
                      +|||||||++|+|.++++..   +.+++..+..|+.||+.||+|||+   .+||||||||+||||+.++ .+||+|||+|
T Consensus       125 ~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla  198 (336)
T 4g3f_A          125 VNIFMELLEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHA  198 (336)
T ss_dssp             EEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTC
T ss_pred             EEEEEeccCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCC
Confidence            99999999999999999763   469999999999999999999999   8999999999999999987 6999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~  676 (747)
                      +.+.........       .....++||+.|+|||++.+..|+.++|||||||++|||+||+.||..... .....+...
T Consensus       199 ~~~~~~~~~~~~-------~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~  271 (336)
T 4g3f_A          199 LCLQPDGLGKSL-------LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASE  271 (336)
T ss_dssp             EEC-------------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHS
T ss_pred             eEccCCCcccce-------ecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcC
Confidence            876543221110       001124688999999999999999999999999999999999999975432 222222221


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .  .     ..+.++..+    +..+.+++.+||+.||++|||+.|++++|..+.+.
T Consensus       272 ~--~-----~~~~~~~~~----s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~  317 (336)
T 4g3f_A          272 P--P-----PIREIPPSC----APLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE  317 (336)
T ss_dssp             C--C-----GGGGSCTTS----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C--C-----CchhcCccC----CHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence            0  0     001122233    34488999999999999999999999999877653

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=3.7e-50  Score=414.93  Aligned_cols=249  Identities=22%  Similarity=0.242  Sum_probs=194.7

Q ss_pred             CccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          443 DSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      +..+.||+|+||+||+|+. .+++.||||++...  .....+.|.+|+++|++++|||||+++++|....    .....+
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~----~~~~~~  104 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV----KGKKCI  104 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEE----TTEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeecc----CCCcEE
Confidence            4456799999999999985 56899999999743  2344578999999999999999999999986521    113468


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCcEEEecccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRIAKLSDYGISI  598 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~  598 (747)
                      +||||||++|+|.+++++.   ..+++..+..++.||+.||+|||+.. ++||||||||+||||+. ++.+||+|||+|+
T Consensus       105 ~lvmEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~  180 (290)
T 3fpq_A          105 VLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence            9999999999999999763   46999999999999999999999832 24999999999999984 7999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~~~~  677 (747)
                      .......              ...+||+.|+|||++. +.|+.++|||||||++|||+||+.||.... ...+.......
T Consensus       181 ~~~~~~~--------------~~~~GTp~YmAPE~~~-~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~  245 (290)
T 3fpq_A          181 LKRASFA--------------KAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG  245 (290)
T ss_dssp             GCCTTSB--------------EESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTT
T ss_pred             eCCCCcc--------------CCcccCccccCHHHcC-CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcC
Confidence            5332111              1246889999999885 469999999999999999999999996432 22222211111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                         ..    .+.....+++    ++.+++.+||+.||++|||+.|+++
T Consensus       246 ---~~----~~~~~~~~~~----~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          246 ---VK----PASFDKVAIP----EVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             ---CC----CGGGGGCCCH----HHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ---CC----CCCCCccCCH----HHHHHHHHHccCChhHCcCHHHHhc
Confidence               00    1111122333    4789999999999999999999985

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.6e-50  Score=436.24  Aligned_cols=250  Identities=17%  Similarity=0.266  Sum_probs=206.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++...+....+.+.+|+++|++++|||||+++++|...        +.
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~--------~~  222 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG--------DE  222 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEET--------TE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEEC--------CE
Confidence            5688999999999999999995 57999999999866555567789999999999999999999999874        48


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      +|||||||++|+|.+++..    ..+++..+..|+.||+.||+|||+   .+||||||||+||||+.++.+||+|||+|+
T Consensus       223 ~~iVmEy~~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~  295 (423)
T 4fie_A          223 LWVVMEFLEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCA  295 (423)
T ss_dssp             EEEEEECCTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCE
T ss_pred             EEEEEeCCCCCcHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccce
Confidence            9999999999999999874    248999999999999999999999   899999999999999999999999999998


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .+......            ....+|++.|+|||++....|+.++|||||||++|||++|+.||................
T Consensus       296 ~~~~~~~~------------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~  363 (423)
T 4fie_A          296 QVSKEVPR------------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNL  363 (423)
T ss_dssp             ECCSSCCC------------BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC
T ss_pred             ECCCCCcc------------ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCC
Confidence            65432211            112578999999999999999999999999999999999999997554333222222111


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..      .......+++    .+.+|+.+||+.||++|||+.|++++
T Consensus       364 ~~------~~~~~~~~s~----~~~dli~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          364 PP------RLKNLHKVSP----SLKGFLDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             CC------CCSCTTSSCH----HHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CC------CCcccccCCH----HHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            10      0011122333    48899999999999999999999864

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.2e-50  Score=420.56  Aligned_cols=248  Identities=18%  Similarity=0.247  Sum_probs=205.3

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||+||+|+ ..+|+.||||++...   +....+.+.+|+++|++++|||||++++++.+.       
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-------  104 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD-------  104 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-------
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-------
Confidence            579999999999999999999 467999999999743   234567899999999999999999999999773       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +.+|||||||++|+|.+++.+.   +.+++..+..++.||+.||+|||+   .+||||||||+|||++.++.+||+|||
T Consensus       105 -~~~yivmEy~~gG~L~~~i~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFG  177 (311)
T 4aw0_A          105 -EKLYFGLSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFG  177 (311)
T ss_dssp             -SEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             -CEEEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcC
Confidence             4899999999999999999763   459999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~  674 (747)
                      +|+.+........          ...++||+.|+|||++....|+.++||||+||++|||+||+.||....... ...+.
T Consensus       178 la~~~~~~~~~~~----------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~  247 (311)
T 4aw0_A          178 TAKVLSPESKQAR----------ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKII  247 (311)
T ss_dssp             TCEECCTTTTCCC----------BCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             CceecCCCCCccc----------ccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            9987643221110          112578999999999999999999999999999999999999997654333 22222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ..          +..++..++    .++.+|+.+||+.||++|||+.|++.
T Consensus       248 ~~----------~~~~p~~~s----~~~~dli~~lL~~dp~~R~t~~e~~~  284 (311)
T 4aw0_A          248 KL----------EYDFPEKFF----PKARDLVEKLLVLDATKRLGCEEMEG  284 (311)
T ss_dssp             HT----------CCCCCTTCC----HHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred             cC----------CCCCCcccC----HHHHHHHHHHccCCHhHCcChHHHcC
Confidence            21          011122233    34889999999999999999998753

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.3e-49  Score=407.18  Aligned_cols=247  Identities=21%  Similarity=0.303  Sum_probs=190.6

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||+||+|+ ..+|+.||||+++..   +....+.+.+|+++|++++|||||++++++.+.      
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~------   85 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSK------   85 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECS------
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC------
Confidence            3689999999999999999999 467999999999743   233456789999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..|+||||| +|+|.+++.++   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        86 --~~~~ivmEy~-~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DF  156 (275)
T 3hyh_A           86 --DEIIMVIEYA-GNELFDYIVQR---DKMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADF  156 (275)
T ss_dssp             --SEEEEEEECC-CEEHHHHHHHS---CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCS
T ss_pred             --CEEEEEEeCC-CCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeec
Confidence              4899999999 68999998763   469999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      |+|+........             ...+|++.|+|||++.+..| +.++||||+||++|||+||+.||.......+...
T Consensus       157 Gla~~~~~~~~~-------------~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~  223 (275)
T 3hyh_A          157 GLSNIMTDGNFL-------------KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKN  223 (275)
T ss_dssp             SCC----------------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred             CCCeecCCCCcc-------------CCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence            999765432211             12468899999999988776 5799999999999999999999976544333222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....         +.++...+    ..+.+++.+||+.||++|||+.|++++
T Consensus       224 i~~~~---------~~~p~~~s----~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          224 ISNGV---------YTLPKFLS----PGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             HHHTC---------CCCCTTSC----HHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             HHcCC---------CCCCCCCC----HHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            21111         11112233    347899999999999999999999864

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=8.3e-50  Score=414.27  Aligned_cols=246  Identities=24%  Similarity=0.317  Sum_probs=193.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe----CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|++.+.||+|+||+||+|+.    .+++.||||+++...  ......+.+|+++|++++|||||++++++.+.     
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----   98 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTE-----   98 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEET-----
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC-----
Confidence            5799999999999999999984    247899999997432  22334678899999999999999999999874     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         +.+|||||||++|+|.+++.+.   ..+++.++..++.||+.||+|||+   .+||||||||+|||++.++.+||+|
T Consensus        99 ---~~~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~D  169 (304)
T 3ubd_A           99 ---GKLYLILDFLRGGDLFTRLSKE---VMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTD  169 (304)
T ss_dssp             ---TEEEEEECCCTTCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEES
T ss_pred             ---CEEEEEEEcCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEecc
Confidence               4899999999999999999863   459999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~  672 (747)
                      ||+|+.........            ...+|++.|+|||++....|+.++||||+||++|||+||+.||....... +..
T Consensus       170 FGla~~~~~~~~~~------------~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~  237 (304)
T 3ubd_A          170 FGLSKESIDHEKKA------------YSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTM  237 (304)
T ss_dssp             SEEEEC-----CCC------------CSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred             cccceeccCCCccc------------cccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence            99997654322110            12468899999999999999999999999999999999999997654433 222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH-----HHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF-----EDVLW  725 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~-----~evl~  725 (747)
                      +...          .+..+..+++    ++.+++.+||+.||++|||+     +|+++
T Consensus       238 i~~~----------~~~~p~~~s~----~~~~li~~~L~~dP~~R~ta~~~~~~eil~  281 (304)
T 3ubd_A          238 ILKA----------KLGMPQFLSP----EAQSLLRMLFKRNPANRLGAGPDGVEEIKR  281 (304)
T ss_dssp             HHHC----------CCCCCTTSCH----HHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred             HHcC----------CCCCCCcCCH----HHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence            2221          0111222333    48899999999999999984     56654

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.8e-49  Score=412.26  Aligned_cols=270  Identities=17%  Similarity=0.286  Sum_probs=191.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC----
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD----  512 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~----  512 (747)
                      .++|++++.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+...    
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            45799999999999999999994 579999999997543 334567899999999999999999999987643100    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                      ......+|+|||||++|+|.+++.........++..++.|+.||+.||+|||+   .+||||||||+|||++.++.+||+
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl~~~~~vKl~  160 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVG  160 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH---CcCccccCcHHHeEECCCCcEEEc
Confidence            01123579999999999999999865444456778889999999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+|+........................+||+.|+|||++.+..|+.++|||||||++|||++   ||.... +....
T Consensus       161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~-~~~~~  236 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM-ERVRT  236 (299)
T ss_dssp             CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH-HHHHH
T ss_pred             cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc-HHHHH
Confidence            99999877544322111100011111223578999999999999999999999999999999997   554321 11111


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      +...... .     -|..    .........+++.+||+.||++|||+.|+++
T Consensus       237 ~~~~~~~-~-----~p~~----~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          237 LTDVRNL-K-----FPPL----FTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHHHTT-C-----CCHH----HHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHhcC-C-----CCCC----CcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1111100 0     0111    1222334678999999999999999999986

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.9e-46  Score=401.38  Aligned_cols=270  Identities=15%  Similarity=0.171  Sum_probs=201.8

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...  ....+.+.+|+++|++++|||||++++++.....  ....
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~--~~~~  131 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVP--YGEF  131 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSC--TTTC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccc--cccC
Confidence            5799999999999999999994 679999999997432  3345678899999999999999999998865321  1123


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ..+|||||||+ |+|.+++..   ...+++..+..|+.||+.||+|||+   .+||||||||+|||++.++.+||+|||+
T Consensus       132 ~~~~ivmE~~~-g~L~~~i~~---~~~l~~~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~DFGl  204 (398)
T 4b99_A          132 KSVYVVLDLME-SDLHQIIHS---SQPLTLEHVRYFLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGM  204 (398)
T ss_dssp             CCEEEEEECCS-EEHHHHHTS---SSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CEEEEEEeCCC-CCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CcCcCCCcCccccccCCCCCEEEeecce
Confidence            57899999996 689999876   3469999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~  674 (747)
                      |+.+.........        .....++++.|+|||++.+. .|+.++||||+||++|||++|+.||.... .+.+..+.
T Consensus       205 a~~~~~~~~~~~~--------~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~  276 (398)
T 4b99_A          205 ARGLCTSPAEHQY--------FMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIM  276 (398)
T ss_dssp             CBCC-------CC--------CCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHH
T ss_pred             eeecccCcccccc--------ccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence            9866432211110        11124788999999987764 57999999999999999999999986543 34444333


Q ss_pred             hccCcCCcccc--------------cccccc---CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRI--------------VDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~--------------~d~~~~---~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...........              ..+...   ....+....++.+|+.+||+.||.+|||+.|++++
T Consensus       277 ~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          277 MVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             HHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             HhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            22111100000              000000   00011223458899999999999999999999864

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=6.4e-45  Score=389.73  Aligned_cols=270  Identities=17%  Similarity=0.202  Sum_probs=196.2

Q ss_pred             HHhhCCCccccccCCCCeeEEEEEe----CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCC
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~  511 (747)
                      ...+.|++.+.||+|+||+||+|+.    .+++.||||++....  ....+.+|+++|+.+ +|||||++++++.+.   
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~---   92 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKN---   92 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEET---
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEEC---
Confidence            4467899999999999999999974    247899999986433  345678999999998 699999999998773   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-CcEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIAK  590 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~k  590 (747)
                           +.+++|||||++|+|.++++      .+++.++..++.|++.||+|||+   .+||||||||+|||++.+ +.+|
T Consensus        93 -----~~~~lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~k  158 (361)
T 4f9c_A           93 -----DHVVIAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKYA  158 (361)
T ss_dssp             -----TEEEEEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEE
T ss_pred             -----CEEEEEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeEE
Confidence                 48999999999999999884      38899999999999999999999   899999999999999876 7999


Q ss_pred             EecccccccccccchhcccCC----------------CCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHH
Q 044236          591 LSDYGISIIMEEHEKLEAKGE----------------GPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILL  653 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~  653 (747)
                      |+|||+|+...+.........                ...........+||+.|+|||++.+. .|+.++||||+||++|
T Consensus       159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~  238 (361)
T 4f9c_A          159 LVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFL  238 (361)
T ss_dssp             ECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHH
T ss_pred             ECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHH
Confidence            999999976543221100000                00000011234789999999988765 5899999999999999


Q ss_pred             HHhhCCCCCCCC--hhhhHHHHHhccCcC----------------------Ccccc------cc---cccc---------
Q 044236          654 ESLVGPIVTGKG--EAFLLNEMASFGSQD----------------------GRRRI------VD---PVVL---------  691 (747)
Q Consensus       654 Elltg~~p~~~~--~~~~~~~~~~~~~~~----------------------~~~~~------~d---~~~~---------  691 (747)
                      ||+||+.||...  +.+.+..+.......                      .....      .+   |...         
T Consensus       239 ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  318 (361)
T 4f9c_A          239 SLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATN  318 (361)
T ss_dssp             HHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC-------------------
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhcccccccccccccccccccc
Confidence            999999888533  223333222110000                      00000      00   0000         


Q ss_pred             CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          692 TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       692 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .......+.++.+|+.+|++.||++|||++|+++
T Consensus       319 ~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~  352 (361)
T 4f9c_A          319 LEGWNEVPDEAYDLLDKLLDLNPASRITAEEALL  352 (361)
T ss_dssp             ---CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             ccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            0001123345889999999999999999999885

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=3.4e-44  Score=381.03  Aligned_cols=284  Identities=34%  Similarity=0.517  Sum_probs=230.4

Q ss_pred             cCHHHHHHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccC
Q 044236          430 FYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESG  509 (747)
Q Consensus       430 ~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~  509 (747)
                      +.+.++..++++|+..+.||+|+||.||+|+..+|+.||||++........+.+.+|++++++++||||++++++|... 
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-  107 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER-  107 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT-
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC-
Confidence            3344556678999999999999999999999888999999998866666678899999999999999999999998763 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                             +..++||||+++|+|.+++.... ....++|..+..++.|+++||+|||+   .+|+||||||+||+++.++.
T Consensus       108 -------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~  177 (321)
T 2qkw_B          108 -------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFV  177 (321)
T ss_dssp             -------TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCC
T ss_pred             -------CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCC
Confidence                   36899999999999999997542 23469999999999999999999999   89999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-  667 (747)
                      +||+|||+++.........          ......++..|++||.+....++.++|||||||++|||+||+.|+..... 
T Consensus       178 ~kl~Dfg~~~~~~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~  247 (321)
T 2qkw_B          178 PKITDFGISKKGTELDQTH----------LSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPR  247 (321)
T ss_dssp             EEECCCTTCEECSSSSCCC----------CBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSS
T ss_pred             EEEeecccccccccccccc----------cccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcH
Confidence            9999999997543221110          01123567789999999888999999999999999999999988864321 


Q ss_pred             ---hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          668 ---FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       668 ---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                         ....+.............+++......+.+....+.+++.+||+.||++|||+.|++++|+.+.+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~  317 (321)
T 2qkw_B          248 EMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ  317 (321)
T ss_dssp             SCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence               1122222222223344555666666677888889999999999999999999999999999887654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.4e-44  Score=410.37  Aligned_cols=251  Identities=17%  Similarity=0.263  Sum_probs=206.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++........+.+.+|+++|+.++|||||+++++|.+.        .
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--------~  227 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDD--------N  227 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECS--------S
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEEC--------C
Confidence            46899999999999999999984 67999999999876666667889999999999999999999999873        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC--CcEEEeccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH--RIAKLSDYG  595 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~--~~~kl~DFG  595 (747)
                      .++||||||++|+|.+++...  ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.+  +.+||+|||
T Consensus       228 ~~~iv~E~~~gg~L~~~i~~~--~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG  302 (573)
T 3uto_A          228 EMVMIYEFMSGGELFEKVADE--HNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFG  302 (573)
T ss_dssp             EEEEEEECCCCCBHHHHHTCT--TSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCS
T ss_pred             EEEEEEeecCCCcHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeecc
Confidence            899999999999999998653  3469999999999999999999999   899999999999999854  899999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~  674 (747)
                      +|+.+......             ...+|++.|+|||++.+..|+.++||||+||++|||++|+.||....... +..+.
T Consensus       303 ~a~~~~~~~~~-------------~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~  369 (573)
T 3uto_A          303 LTAHLDPKQSV-------------KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVK  369 (573)
T ss_dssp             SCEECCTTSEE-------------EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHH
T ss_pred             ceeEccCCCce-------------eeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHH
Confidence            99876533221             12468889999999999999999999999999999999999997654332 22222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....      .+++.....+++    .+.+|+.+||+.||.+|||+.|+++
T Consensus       370 ~~~~------~~~~~~~~~~s~----~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          370 SCDW------NMDDSAFSGISE----DGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             TTCC------CCCSGGGTTSCH----HHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             hCCC------CCCcccccCCCH----HHHHHHHHHccCChhHCcCHHHHhc
Confidence            2110      011111222333    4789999999999999999999986

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2e-44  Score=405.50  Aligned_cols=249  Identities=18%  Similarity=0.228  Sum_probs=196.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHH---HHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNL---KVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~---~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|++.++||+|+||+||+|+. .+|+.||||+++...   ......+   ..++.+++.++|||||+++++|.+.   
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~---  264 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP---  264 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS---
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC---
Confidence            46899999999999999999994 579999999997422   1222233   3456778889999999999999873   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                           +.+|||||||+||+|.++|.+.   +.+++..+..|+.||+.||+|||+   .+||||||||+|||||.+|.+||
T Consensus       265 -----~~lylVmEy~~GGdL~~~l~~~---~~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL  333 (689)
T 3v5w_A          265 -----DKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRI  333 (689)
T ss_dssp             -----SEEEEEECCCCSCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEE
T ss_pred             -----CEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEe
Confidence                 4899999999999999999863   459999999999999999999999   89999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL  670 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~  670 (747)
                      +|||+|+.......              ...+|++.|+|||++.. ..|+.++||||+||++|||++|+.||........
T Consensus       334 ~DFGlA~~~~~~~~--------------~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~  399 (689)
T 3v5w_A          334 SDLGLACDFSKKKP--------------HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK  399 (689)
T ss_dssp             CCCTTCEECSSCCC--------------CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCH
T ss_pred             cccceeeecCCCCC--------------CCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH
Confidence            99999976543211              12478999999999964 5799999999999999999999999975332211


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHH
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLW  725 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~  725 (747)
                      .++......      .++.++..+++    .+.+|+.+||+.||.+|++     +.||.+
T Consensus       400 ~~i~~~i~~------~~~~~p~~~S~----~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          400 HEIDRMTLT------MAVELPDSFSP----ELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             HHHHHHHHH------CCCCCCTTSCH----HHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             HHHHHhhcC------CCCCCCccCCH----HHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence            121111000      01112223333    4889999999999999998     677764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1e-43  Score=378.27  Aligned_cols=285  Identities=26%  Similarity=0.447  Sum_probs=231.2

Q ss_pred             ccccCHHHHHHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeee
Q 044236          427 YRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHC  505 (747)
Q Consensus       427 ~~~~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~  505 (747)
                      .+.|+++++....++|++.+.||+|+||.||+|+..+|+.||||++..... .....+.+|++++++++||||++++++|
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   96 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC   96 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence            457889999999999999999999999999999988899999999975432 2223688999999999999999999999


Q ss_pred             eccCCCCCCCCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec
Q 044236          506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD  584 (747)
Q Consensus       506 ~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  584 (747)
                      ...        ...++||||+++|+|.+++.... ....++|..+..++.|++.||+|||+.+.++|+||||||+|||++
T Consensus        97 ~~~--------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~  168 (326)
T 3uim_A           97 MTP--------TERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLD  168 (326)
T ss_dssp             CCS--------SCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEEC
T ss_pred             ecC--------CceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEEC
Confidence            763        36799999999999999997643 234599999999999999999999994334999999999999999


Q ss_pred             CCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          585 EHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       585 ~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      .++.+||+|||+++..........           ....++..|++||.+....++.++|||||||++|||+||+.||..
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  237 (326)
T 3uim_A          169 EEFEAVVGDFGLAKLMDYKDTHVT-----------TAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDL  237 (326)
T ss_dssp             TTCCEEECCCSSCEECCSSSSCEE-----------CCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCH
T ss_pred             CCCCEEeccCccccccCccccccc-----------ccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccc
Confidence            999999999999976543221111           112356778999999888899999999999999999999999852


Q ss_pred             ------ChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          665 ------GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       665 ------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                            .......++.............+......++.+....+.+++.+||+.||.+|||+.||+++|+..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          238 ARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             cccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence                  122223333333334444555666666677888889999999999999999999999999999853

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.4e-42  Score=363.75  Aligned_cols=274  Identities=18%  Similarity=0.295  Sum_probs=210.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.||+|++........+.+.+|++++++++||||+++++++...        .
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--------~   80 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKD--------K   80 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET--------T
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecC--------C
Confidence            35788899999999999999995 56999999998766666778899999999999999999999999873        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++...  ...++|..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  155 (310)
T 3s95_A           81 RLNFITEYIKGGTLRGIIKSM--DSQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLA  155 (310)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC--CTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTC
T ss_pred             eeEEEEEecCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeecccc
Confidence            789999999999999999764  3469999999999999999999999   88999999999999999999999999999


Q ss_pred             ccccccchhcccCC--CCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          598 IIMEEHEKLEAKGE--GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +.............  ............++..|+|||.+....++.++|||||||++|||++|..|+.........    
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~----  231 (310)
T 3s95_A          156 RLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD----  231 (310)
T ss_dssp             EECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT----
T ss_pred             eecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH----
Confidence            87654332111000  000000111245677899999999989999999999999999999998887532211000    


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQA  735 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  735 (747)
                        .........+......++++    +.+++.+||+.||++|||+.|+++.|+.+.....
T Consensus       232 --~~~~~~~~~~~~~~~~~~~~----l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~  285 (310)
T 3s95_A          232 --FGLNVRGFLDRYCPPNCPPS----FFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA  285 (310)
T ss_dssp             --SSBCHHHHHHHTCCTTCCTT----HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             --HhhhhhccccccCCCCCCHH----HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence              00000111111112233333    8889999999999999999999999998866443

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=2.2e-42  Score=364.68  Aligned_cols=260  Identities=22%  Similarity=0.307  Sum_probs=201.6

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ..++|++.+.||+|+||.||+|+. +|+.||||++....  ....+.+.+|++++++++|||||++++++...       
T Consensus        35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-------  106 (309)
T 3p86_A           35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQP-------  106 (309)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST-------
T ss_pred             ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-------
Confidence            356789999999999999999987 58899999987543  34456789999999999999999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceeecCCCcEEEec
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG--SFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--ivHrDlk~~NILld~~~~~kl~D  593 (747)
                       ...++||||+++|+|.+++........+++..+..++.|+++||+|||+   .+  |+||||||+|||++.++.+||+|
T Consensus       107 -~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~D  182 (309)
T 3p86_A          107 -PNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNLKSPNLLVDKKYTVKVCD  182 (309)
T ss_dssp             -TCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTCCGGGEEECTTCCEEECC
T ss_pred             -CceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCCChhhEEEeCCCcEEECC
Confidence             3689999999999999999764322348999999999999999999999   66  99999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++........            .....++..|+|||.+....++.++|||||||++|||+||+.||...........
T Consensus       183 fg~a~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~  250 (309)
T 3p86_A          183 FGLSRLKASTFLS------------SKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAA  250 (309)
T ss_dssp             CC-----------------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHH
T ss_pred             CCCCccccccccc------------cccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence            9999754322111            0113466789999999888899999999999999999999999986544333222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ......       .......+++    .+.+++.+||+.||.+|||+.|+++.|+.+..
T Consensus       251 ~~~~~~-------~~~~~~~~~~----~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~  298 (309)
T 3p86_A          251 VGFKCK-------RLEIPRNLNP----QVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK  298 (309)
T ss_dssp             HHHSCC-------CCCCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred             HHhcCC-------CCCCCccCCH----HHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            211110       1111222333    48899999999999999999999999987754

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=5.1e-42  Score=371.12  Aligned_cols=263  Identities=18%  Similarity=0.318  Sum_probs=208.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe--------CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeecc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL--------ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIES  508 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~  508 (747)
                      .++|.+.+.||+|+||.||+|+.        .++..||||+++.. .....+.+.+|+++|+++ +|||||+++++|...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            36788899999999999999984        23568999999754 334557899999999999 899999999999763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                              ...++||||+++|+|.+++.....             ...+++..++.++.||++||+|||+   .+|+|||
T Consensus       160 --------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrD  228 (370)
T 2psq_A          160 --------GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRD  228 (370)
T ss_dssp             --------SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             --------CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeccc
Confidence                    368999999999999999976421             2358999999999999999999999   8999999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      |||+|||++.++.+||+|||+++............          ...++..|+|||++....++.++|||||||++|||
T Consensus       229 lkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~----------~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~el  298 (370)
T 2psq_A          229 LAARNVLVTENNVMKIADFGLARDINNIDYYKKTT----------NGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI  298 (370)
T ss_dssp             CCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTT----------TTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred             cchhhEEECCCCCEEEccccCCcccCcccceeccc----------CCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999997654322111100          01234568899999888999999999999999999


Q ss_pred             hh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          656 LV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       656 lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      +| |+.||.......+........        .+.....++    ..+.+++.+||+.||.+|||+.|+++.|+.+....
T Consensus       299 lt~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~----~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~  366 (370)
T 2psq_A          299 FTLGGSPYPGIPVEELFKLLKEGH--------RMDKPANCT----NELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  366 (370)
T ss_dssp             HTTSCCSSTTCCGGGHHHHHHTTC--------CCCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HcCCCCCCCCCCHHHHHHHHhcCC--------CCCCCCCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence            99 899987655443333222111        011112333    34889999999999999999999999999887654

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.7e-42  Score=364.93  Aligned_cols=266  Identities=19%  Similarity=0.302  Sum_probs=206.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC----CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|.+.+.||+|+||.||+|+..    .+..||||+++.. .....+.+.+|++++++++||||++++++|...     
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----  122 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRG-----  122 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGG-----
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-----
Confidence            356888999999999999999963    3556999999754 344457899999999999999999999999763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.++++..  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus       123 ---~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~D  194 (325)
T 3kul_A          123 ---RLAMIVTEYMENGSLDTFLRTH--DGQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSD  194 (325)
T ss_dssp             ---GCCEEEEECCTTCBHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECC
T ss_pred             ---CccEEEeeCCCCCcHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECC
Confidence               3689999999999999999754  3469999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++...........         .....++..|++||.+....++.++|||||||++|||++ |+.||..........
T Consensus       195 fg~a~~~~~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~  265 (325)
T 3kul_A          195 FGLSRVLEDDPDAAYT---------TTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVIS  265 (325)
T ss_dssp             CSSCEECC----CCEE---------CC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHH
T ss_pred             CCcccccccCccceee---------ccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence            9999876543221111         011123446889999988889999999999999999999 999987554433222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhhcc
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATAD  738 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~~~  738 (747)
                      ......        .......++.    .+.+++.+||+.||.+|||+.||++.|+.+.+.....+
T Consensus       266 ~~~~~~--------~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~~~  319 (325)
T 3kul_A          266 SVEEGY--------RLPAPMGCPH----ALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESLR  319 (325)
T ss_dssp             HHHTTC--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC---
T ss_pred             HHHcCC--------CCCCCCCcCH----HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccccc
Confidence            221110        1111122333    48899999999999999999999999998876554433

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.3e-42  Score=364.10  Aligned_cols=273  Identities=19%  Similarity=0.298  Sum_probs=204.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|++     .+++.||||++........+.+.+|++++++++||||++++++|...+     
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----   84 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG-----   84 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHH-----
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC-----
Confidence            5788899999999999999984     358999999998766666788999999999999999999999987532     


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       ....++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        85 -~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Df  158 (295)
T 3ugc_A           85 -RRNLKLIMEYLPYGSLRDYLQKH--KERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDF  158 (295)
T ss_dssp             -HTSCEEEEECCTTCBHHHHHHHC--GGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCC
T ss_pred             -CCceEEEEEeCCCCCHHHHHHhc--ccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccC
Confidence             23579999999999999999764  3358999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.............         ...++..|+|||.+....++.++|||||||++|||+||..|+............
T Consensus       159 g~~~~~~~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~  229 (295)
T 3ugc_A          159 GLTKVLPQDKEFFKVKE---------PGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIG  229 (295)
T ss_dssp             CSCC----------------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHC
T ss_pred             cccccccCCcceeeecc---------CCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhc
Confidence            99987643322111000         012334588999998889999999999999999999998887654322211110


Q ss_pred             hccCcC----CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          675 SFGSQD----GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       675 ~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ......    .....+........+...+..+.+++.+||+.||++|||+.|++++|+.+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~  291 (295)
T 3ugc_A          230 NDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  291 (295)
T ss_dssp             TTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence            000000    0000000000011122333458899999999999999999999999998765

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=5.4e-42  Score=359.67  Aligned_cols=249  Identities=19%  Similarity=0.319  Sum_probs=203.5

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+ ..+|+.||||++........+.+.+|+.++++++|||||++++++...        +
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--------~   90 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG--------D   90 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEET--------T
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEEC--------C
Confidence            4679999999999999999999 467999999999866666677889999999999999999999999873        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++...    .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~  163 (297)
T 3fxz_A           91 ELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFC  163 (297)
T ss_dssp             EEEEEEECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEECCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCc
Confidence            789999999999999999753    48999999999999999999999   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~~~  676 (747)
                      +.........            ....++..|++||.+....++.++|||||||++|||+||+.||........ ..+...
T Consensus       164 ~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~  231 (297)
T 3fxz_A          164 AQITPEQSKR------------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN  231 (297)
T ss_dssp             EECCSTTCCB------------CCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHH
T ss_pred             eecCCccccc------------CCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhC
Confidence            7654322111            113456788999999888999999999999999999999999975543222 111111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ...    ..       ..+......+.+++.+||+.||++|||+.|+++
T Consensus       232 ~~~----~~-------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          232 GTP----EL-------QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             CSC----CC-------SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCC----CC-------CCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            110    00       011223344889999999999999999999986

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4.9e-42  Score=364.41  Aligned_cols=271  Identities=17%  Similarity=0.251  Sum_probs=204.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|+.. ++.||||++..... ....+.+|+.++++++|||||++++++.....    ....
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~----~~~~   96 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTS----VDVD   96 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECS----SSEE
T ss_pred             hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCC----CCce
Confidence            467899999999999999999875 78999999975432 33455679999999999999999999987431    1345


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-------CCCcccCCCCCCceeecCCCcEEE
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV-------ISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-------~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                      .++||||+++|+|.++++..    .++|..+..++.|+++||+|||+..       .++|+||||||+|||++.++.+||
T Consensus        97 ~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL  172 (322)
T 3soc_A           97 LWLITAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACI  172 (322)
T ss_dssp             EEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEE
T ss_pred             EEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEE
Confidence            79999999999999999753    4999999999999999999999820       119999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----cCCCcCCceeehhHHHHHHhhCCCCCCCCh
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----QRTKLEDDVYNFGFILLESLVGPIVTGKGE  666 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~s~k~DVwSfGvvl~Elltg~~p~~~~~  666 (747)
                      +|||+++..........          .....++..|+|||++..     ..++.++|||||||++|||+||+.||....
T Consensus       173 ~DFg~a~~~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~  242 (322)
T 3soc_A          173 ADFGLALKFEAGKSAGD----------THGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPV  242 (322)
T ss_dssp             CCCTTCEEECTTSCCCC----------CTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCC
T ss_pred             ccCCcccccccccCccc----------cccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCc
Confidence            99999976543221110          011245677889998865     356678899999999999999988886432


Q ss_pred             hh-------------hHHHHHhccCcCCccccccccccCCC-CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          667 AF-------------LLNEMASFGSQDGRRRIVDPVVLTTC-SQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       667 ~~-------------~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ..             ....+........    ..+.+...+ .......+.+++.+||+.||++|||+.||+++|+.+.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~  318 (322)
T 3soc_A          243 DEYMLPFEEEIGQHPSLEDMQEVVVHKK----KRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR  318 (322)
T ss_dssp             CCCCCTTHHHHCSSCCHHHHHHHHTTSC----CCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             chhccchhhhhccCCchhhhhhhhhccc----CCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            11             0011111111111    111111111 22445668999999999999999999999999998876


Q ss_pred             H
Q 044236          733 V  733 (747)
Q Consensus       733 ~  733 (747)
                      .
T Consensus       319 ~  319 (322)
T 3soc_A          319 L  319 (322)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1.2e-41  Score=368.45  Aligned_cols=261  Identities=20%  Similarity=0.320  Sum_probs=197.5

Q ss_pred             hCCCccccccCCCCeeEEEEEeC----CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|+..    ++..||||+++.. .....+.+.+|+.++++++|||||+++++|...      
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~------  118 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS------  118 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS------
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC------
Confidence            57899999999999999999854    5778999999754 334457899999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.++++..  ...+++..+..++.||++||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus       119 --~~~~lv~e~~~~~sL~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Df  191 (373)
T 2qol_A          119 --KPVMIVTEYMENGSLDSFLRKH--DAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDF  191 (373)
T ss_dssp             --SSCEEEEECCTTCBHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC
T ss_pred             --CceEEEEeCCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcC
Confidence              3689999999999999999764  3469999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |+++...........         .....++..|++||.+....++.++|||||||++|||++ |+.||.......+...
T Consensus       192 g~a~~~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~  262 (373)
T 2qol_A          192 GLGRVLEDDPEAAYT---------TRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKA  262 (373)
T ss_dssp             -------------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHH
T ss_pred             ccccccccCCcccee---------ccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            999776533211110         001123456889999988899999999999999999998 9999875443332222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .....        .......++    ..+.+++.+||+.||.+||++.||++.|+.+.+..
T Consensus       263 i~~~~--------~~~~~~~~~----~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~  311 (373)
T 2qol_A          263 VDEGY--------RLPPPMDCP----AALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP  311 (373)
T ss_dssp             HHTTE--------ECCCCTTCB----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred             HHcCC--------CCCCCcccc----HHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence            21110        011112233    34889999999999999999999999999887643

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.8e-41  Score=359.85  Aligned_cols=261  Identities=18%  Similarity=0.262  Sum_probs=209.4

Q ss_pred             ccCHHHHHHHhhC----------CCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCC
Q 044236          429 TFYLEELKEATNN----------FDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH  497 (747)
Q Consensus       429 ~~~~~~l~~~~~~----------f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~n  497 (747)
                      .++++++..+++.          |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++|||
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n  103 (321)
T 2c30_A           24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN  103 (321)
T ss_dssp             -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred             cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence            4778888888765          666778999999999999964 79999999998766666778999999999999999


Q ss_pred             cceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCC
Q 044236          498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLT  577 (747)
Q Consensus       498 Iv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk  577 (747)
                      |++++++|...        ...++||||+++|+|.+++..    ..+++..+..++.|++.||+|||+   .+|+|||||
T Consensus       104 iv~~~~~~~~~--------~~~~lv~e~~~~~~L~~~l~~----~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlk  168 (321)
T 2c30_A          104 VVEMYKSYLVG--------EELWVLMEFLQGGALTDIVSQ----VRLNEEQIATVCEAVLQALAYLHA---QGVIHRDIK  168 (321)
T ss_dssp             BCCEEEEEEET--------TEEEEEECCCCSCBHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred             cceEEEEEEEC--------CEEEEEEecCCCCCHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCC
Confidence            99999999873        378999999999999999864    358999999999999999999999   899999999


Q ss_pred             CCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh
Q 044236          578 TNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV  657 (747)
Q Consensus       578 ~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt  657 (747)
                      |+|||++.++.+||+|||+++.........            ....++..|++||.+....++.++|||||||++|||++
T Consensus       169 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~  236 (321)
T 2c30_A          169 SDSILLTLDGRVKLSDFGFCAQISKDVPKR------------KSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVD  236 (321)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSSSCCB------------CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             HHHEEECCCCcEEEeeeeeeeecccCcccc------------ccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHh
Confidence            999999999999999999987654321110            11245678899999988889999999999999999999


Q ss_pred             CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          658 GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       658 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      |+.||.................        +...  ........+.+++.+||+.||++|||+.|+++.
T Consensus       237 g~~pf~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          237 GEPPYFSDSPVQAMKRLRDSPP--------PKLK--NSHKVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             SSCTTTTSCHHHHHHHHHHSSC--------CCCT--TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCCCCCCCCHHHHHHHHhcCCC--------CCcC--ccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            9999875443322211111110        1000  011223348899999999999999999999864

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.3e-41  Score=351.41  Aligned_cols=256  Identities=23%  Similarity=0.358  Sum_probs=206.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||.||+|+..+++.||||++.... ...+++.+|++++++++||||+++++++.+.        ...
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~~~   80 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ--------API   80 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSS--------SSE
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecC--------Cce
Confidence            5688899999999999999998888999999997433 3346789999999999999999999998763        368


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        81 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           81 CLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             EEEEECCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             EEEEEeCCCCcHHHHHHhc--CcccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEecccccccc
Confidence            9999999999999999754  3468999999999999999999999   8899999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ...........           ..++..|++||.+....++.++|||||||++|||++ |+.||................
T Consensus       156 ~~~~~~~~~~~-----------~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~  224 (269)
T 4hcu_A          156 VLDDQYTSSTG-----------TKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGF  224 (269)
T ss_dssp             BCCHHHHSTTS-----------TTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTC
T ss_pred             ccccccccccC-----------cccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCc
Confidence            64433221111           112346889999988899999999999999999999 899987654433322221110


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                              .+.....++    ..+.+++.+||+.||++|||+.|++++|+.+.+
T Consensus       225 --------~~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~  266 (269)
T 4hcu_A          225 --------RLYKPRLAS----THVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  266 (269)
T ss_dssp             --------CCCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --------cCCCCCcCC----HHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence                    011111223    348899999999999999999999999998765

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.9e-42  Score=373.27  Aligned_cols=259  Identities=22%  Similarity=0.364  Sum_probs=206.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|.+.+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|+++|++++|||||+++|+|...        
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~--------  184 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK--------  184 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSS--------
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecC--------
Confidence            457888999999999999999965 78999999987432 23345788999999999999999999999763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++|||||++|+|.++++..  ...+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       185 ~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG~  259 (377)
T 3cbl_A          185 QPIYIVMELVQGGDFLTFLRTE--GARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFGM  259 (377)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGG
T ss_pred             CCcEEEEEcCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECcCCC
Confidence            3689999999999999999754  3458999999999999999999999   8899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~  675 (747)
                      ++...........+          ....+..|+|||.+....++.++|||||||++|||+| |+.|+.............
T Consensus       260 s~~~~~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~  329 (377)
T 3cbl_A          260 SREEADGVYAASGG----------LRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVE  329 (377)
T ss_dssp             CEECTTSEEECCSS----------CCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHH
T ss_pred             ceecCCCceeecCC----------CCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            97543321110000          0122446889999988889999999999999999999 899987655443333322


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ....        ...+..+++    .+.+++.+||+.||++|||+.+|++.|+.+..
T Consensus       330 ~~~~--------~~~~~~~~~----~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          330 KGGR--------LPCPELCPD----AVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             TTCC--------CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCC--------CCCCCCCCH----HHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence            1110        111122333    48899999999999999999999999998754

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.3e-41  Score=361.30  Aligned_cols=248  Identities=21%  Similarity=0.289  Sum_probs=202.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+++|+.++||||+++++++...       
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~-------   86 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETE-------   86 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-------
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-------
Confidence            46799999999999999999995 67999999999753  334456788999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        87 -~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG  159 (328)
T 3fe3_A           87 -KTLYLIMEYASGGEVFDYLVAH---GRMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFG  159 (328)
T ss_dssp             -SEEEEEECCCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTT
T ss_pred             -CEEEEEEECCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeecc
Confidence             4799999999999999999763   358999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCC-cCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTK-LEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s-~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      +++........             ...++++.|+|||++....++ .++|||||||++|||++|+.||.......+....
T Consensus       160 ~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i  226 (328)
T 3fe3_A          160 FSNEFTVGGKL-------------DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERV  226 (328)
T ss_dssp             CCGGGSSSCGG-------------GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             CceecCCCCcc-------------ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            99755432211             112466789999999877765 7999999999999999999999866544333322


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....         ..+...+    ..+.+++.+||+.||.+|||+.|++++
T Consensus       227 ~~~~~---------~~p~~~s----~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          227 LRGKY---------RIPFYMS----TDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             HHCCC---------CCCTTSC----HHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             HhCCC---------CCCCCCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            21110         1111223    347899999999999999999999864

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=5.1e-41  Score=354.10  Aligned_cols=281  Identities=30%  Similarity=0.449  Sum_probs=219.6

Q ss_pred             ccccCHHHHHHHhhCCCcc------ccccCCCCeeEEEEEeCCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcCCCC
Q 044236          427 YRTFYLEELKEATNNFDSL------SFMGEGSRGKLYKGRLENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKLQHP  496 (747)
Q Consensus       427 ~~~~~~~~l~~~~~~f~~~------~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l~H~  496 (747)
                      ...|+++++..++++|...      +.||+|+||.||+|+. +++.||||++....    ....+.+.+|+.++++++||
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            4578999999999999877      8899999999999987 57899999986432    23457789999999999999


Q ss_pred             CcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       497 nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                      ||+++++++...        ...++||||+++|+|.+++........++|..+..++.|++.||+|||+   .+|+||||
T Consensus        91 ~i~~~~~~~~~~--------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl  159 (307)
T 2nru_A           91 NLVELLGFSSDG--------DDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDI  159 (307)
T ss_dssp             TBCCEEEEECSS--------SSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             CeEEEEEEEecC--------CceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCC
Confidence            999999998763        3689999999999999998754334569999999999999999999999   89999999


Q ss_pred             CCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHh
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ell  656 (747)
                      ||+||+++.++.+||+|||+++..........          .....++..|++||.+.. .++.++|||||||++|||+
T Consensus       160 kp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~----------~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~  228 (307)
T 2nru_A          160 KSANILLDEAFTAKISDFGLARASEKFAQTVM----------TSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEII  228 (307)
T ss_dssp             CGGGEEECTTCCEEECCCTTCEECCSCSSCEE----------CSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEcCCCcEEEeeccccccccccccccc----------ccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHH
Confidence            99999999999999999999976543221110          011235667888987754 5788999999999999999


Q ss_pred             hCCCCCCCChhh-hHHHHHh-cc-CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          657 VGPIVTGKGEAF-LLNEMAS-FG-SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       657 tg~~p~~~~~~~-~~~~~~~-~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      +|..|+...... ....+.. .. ........+++.. ...+......+.+++.+||+.||.+|||+.+|++.|+.+.
T Consensus       229 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~  305 (307)
T 2nru_A          229 TGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT  305 (307)
T ss_dssp             HCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred             HCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence            999998753321 1111111 00 1111122222222 3345667778999999999999999999999999998763

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=4.2e-41  Score=353.62  Aligned_cols=265  Identities=18%  Similarity=0.260  Sum_probs=199.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhc--CCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK--LQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~--l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. +|+.||||++...   ....+.+|.+++..  ++||||+++++++....    ...
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~----~~~   78 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSR----HSS   78 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEE----TTE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeecccc----CCC
Confidence            46799999999999999999998 6899999998643   33455667776665  89999999999986532    113


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCCcccCCCCCCceeecCCCc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH--------SSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                      ...++||||+++|+|.++++.    ..+++..+..++.|++.||+|||        +   .+|+||||||+|||++.++.
T Consensus        79 ~~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~Nill~~~~~  151 (301)
T 3q4u_A           79 TQLWLITHYHEMGSLYDYLQL----TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK---PAIAHRDLKSKNILVKKNGQ  151 (301)
T ss_dssp             EEEEEEECCCTTCBHHHHHTT----CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB---CEEECSCCCGGGEEECTTSC
T ss_pred             ceeEEehhhccCCCHHHHHhh----cccCHHHHHHHHHHHHHHHHHHHHhhhhccCC---CCeecCCCChHhEEEcCCCC
Confidence            468999999999999999964    35999999999999999999999        6   89999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc------CCCcCCceeehhHHHHHHhhC----
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ------RTKLEDDVYNFGFILLESLVG----  658 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~s~k~DVwSfGvvl~Elltg----  658 (747)
                      +||+|||+++............        .....++..|+|||.+...      .++.++|||||||++|||+||    
T Consensus       152 ~kl~Dfg~a~~~~~~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~  223 (301)
T 3q4u_A          152 CCIADLGLAVMHSQSTNQLDVG--------NNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSN  223 (301)
T ss_dssp             EEECCCTTCEEEETTTTEEECC--------CCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBT
T ss_pred             EEEeeCCCeeeccccccccccc--------ccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCc
Confidence            9999999997654332211110        0112466788999988766      455789999999999999999    


Q ss_pred             ------CCCCCCCh--hhhHHHHHhccCcCCccccccccccC-CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          659 ------PIVTGKGE--AFLLNEMASFGSQDGRRRIVDPVVLT-TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       659 ------~~p~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                            +.||....  ......+.........    .+.... ..+......+.+++.+||+.||.+|||+.||++.|+.
T Consensus       224 ~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~  299 (301)
T 3q4u_A          224 GIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQ----RPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTK  299 (301)
T ss_dssp             TBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred             cccccccccccccCCCCcchhhhhHHHhccCC----CCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhc
Confidence                  67764321  1111111111111111    111111 1233466779999999999999999999999999986


Q ss_pred             H
Q 044236          730 A  730 (747)
Q Consensus       730 ~  730 (747)
                      +
T Consensus       300 i  300 (301)
T 3q4u_A          300 I  300 (301)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.1e-40  Score=355.19  Aligned_cols=249  Identities=21%  Similarity=0.263  Sum_probs=202.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++..   .......+.+|+.++++++||||+++++++...      
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~------   77 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH------   77 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS------
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeC------
Confidence            46789999999999999999995 56999999999753   234567788999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        78 --~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DF  149 (337)
T 1o6l_A           78 --DRLCFVMEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDF  149 (337)
T ss_dssp             --SEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             --CEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeec
Confidence              4799999999999999998753   458999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++........            ....++++.|+|||++....++.++|||||||++|||++|+.||.......+....
T Consensus       150 G~a~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i  217 (337)
T 1o6l_A          150 GLCKEGISDGAT------------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI  217 (337)
T ss_dssp             TTCBCSCCTTCC------------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             cchhhcccCCCc------------ccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence            999753221110            11246788999999998889999999999999999999999998765443332221


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  726 (747)
                      ....         ..++..++    ..+.+++.+||+.||.+||     ++.||+++
T Consensus       218 ~~~~---------~~~p~~~s----~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          218 LMEE---------IRFPRTLS----PEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             HHCC---------CCCCTTSC----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             HcCC---------CCCCCCCC----HHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence            1110         11112233    3488999999999999999     89999764

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=6.6e-41  Score=348.92  Aligned_cols=257  Identities=21%  Similarity=0.297  Sum_probs=204.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|+..++..||||+++... ...+++.+|++++++++||||++++++|...        ..
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~~   93 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--------RP   93 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSS--------SS
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecC--------CC
Confidence            46788999999999999999998888899999997543 2346789999999999999999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  168 (283)
T 3gen_A           94 IFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR  168 (283)
T ss_dssp             EEEEECCCTTCBHHHHHHCG--GGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGG
T ss_pred             eEEEEeccCCCcHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCEEEccccccc
Confidence            89999999999999999753  3458999999999999999999999   899999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ............           ..++..|++||.+....++.++|||||||++|||+| |+.||...............
T Consensus       169 ~~~~~~~~~~~~-----------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~  237 (283)
T 3gen_A          169 YVLDDEYTSSVG-----------SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG  237 (283)
T ss_dssp             GBCCHHHHSTTS-----------TTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTT
T ss_pred             cccccccccccC-----------CccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcc
Confidence            664432221111           112345788999888889999999999999999999 99998765443332222211


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ..        ......++    ..+.+++.+||+.||.+|||+.|+++.|+.+..
T Consensus       238 ~~--------~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          238 LR--------LYRPHLAS----EKVYTIMYSCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             CC--------CCCCTTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cC--------CCCCCcCC----HHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence            10        11111222    348899999999999999999999999988764

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=8.9e-41  Score=354.34  Aligned_cols=273  Identities=17%  Similarity=0.235  Sum_probs=209.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|.+.+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++||||+++++++...+      ..
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~------~~   82 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT------TR   82 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT------TC
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCC------Cc
Confidence            5688899999999999999995 459999999997543 344677889999999999999999999987633      34


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee----cCCCcEEEec
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL----DEHRIAKLSD  593 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl~D  593 (747)
                      ..++||||+++|+|.+++........+++..+..++.|++.||+|||+   .+|+||||||+|||+    +.++.+||+|
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (319)
T 4euu_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (319)
T ss_dssp             CEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEEECC
T ss_pred             eEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEEEcc
Confidence            789999999999999999865434459999999999999999999999   899999999999999    8888999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeee--------ccCCCcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD--------IQRTKLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--------~~~~s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      ||+++.........             ...++..|++||++.        ...++.++|||||||++|||+||+.||...
T Consensus       160 fg~a~~~~~~~~~~-------------~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  226 (319)
T 4euu_A          160 FGAARELEDDEQFV-------------SLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF  226 (319)
T ss_dssp             CTTCEECCTTCCBC-------------CCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECT
T ss_pred             CCCceecCCCCcee-------------ecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99997654322111             123566788888775        467899999999999999999999998632


Q ss_pred             h-----hhhHHHHHhccCcCCcccc---------ccc--cccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          666 E-----AFLLNEMASFGSQDGRRRI---------VDP--VVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       666 ~-----~~~~~~~~~~~~~~~~~~~---------~d~--~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      .     ...+..+...........+         .++  ......+......+.+++.+||+.||++|||+.|+++....
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d  306 (319)
T 4euu_A          227 EGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD  306 (319)
T ss_dssp             TCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred             CccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence            1     1222222221111000000         000  11123456777889999999999999999999999999886


Q ss_pred             HHHHh
Q 044236          730 AAQVQ  734 (747)
Q Consensus       730 ~~~~~  734 (747)
                      .++..
T Consensus       307 ~~~~~  311 (319)
T 4euu_A          307 ILHRG  311 (319)
T ss_dssp             HTC--
T ss_pred             HhhcC
Confidence            65543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=3.5e-41  Score=364.29  Aligned_cols=265  Identities=19%  Similarity=0.285  Sum_probs=206.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|.+.+.||+|+||.||+|++.      +++.||||+++.. .......+.+|+.++++++|||||++++++...   
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~---  146 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS---  146 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecC---
Confidence            357888999999999999999843      4678999999743 344456788999999999999999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENC----PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                           ...++||||+++|+|.+++....    ....+++..++.++.||++||+|||+   .+|+||||||+|||++.++
T Consensus       147 -----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~  218 (367)
T 3l9p_A          147 -----LPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPG  218 (367)
T ss_dssp             -----SSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSS
T ss_pred             -----CCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCC
Confidence                 36799999999999999997542    12458999999999999999999999   8999999999999999554


Q ss_pred             ---cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCC
Q 044236          588 ---IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTG  663 (747)
Q Consensus       588 ---~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~  663 (747)
                         .+||+|||+++...........    .      ...++..|+|||++....++.++|||||||++|||+| |..||.
T Consensus       219 ~~~~~kL~DFG~a~~~~~~~~~~~~----~------~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~  288 (367)
T 3l9p_A          219 PGRVAKIGDFGMARDIYRAGYYRKG----G------CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP  288 (367)
T ss_dssp             TTCCEEECCCHHHHHHHHHSSCTTC----C------GGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CCceEEECCCccccccccccccccC----C------CcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence               5999999999755332211100    0      0123557889999988899999999999999999998 899987


Q ss_pred             CChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 044236          664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQAT  736 (747)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~  736 (747)
                      ......+.........        +.....++.    .+.+++.+||+.||.+|||+.||++.|+.+.+....
T Consensus       289 ~~~~~~~~~~i~~~~~--------~~~~~~~~~----~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~~~  349 (367)
T 3l9p_A          289 SKSNQEVLEFVTSGGR--------MDPPKNCPG----PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDV  349 (367)
T ss_dssp             TCCHHHHHHHHHTTCC--------CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHHH
T ss_pred             CCCHHHHHHHHHcCCC--------CCCCccCCH----HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhChhh
Confidence            6554433332221110        111122333    488999999999999999999999999988775443

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.7e-41  Score=359.51  Aligned_cols=258  Identities=21%  Similarity=0.307  Sum_probs=200.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcE----EEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTY----VAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|++.+.||+|+||.||+|+. .+++.    ||+|.++.. .....+.+.+|+.++++++|||||+++++|...     
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----   89 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-----   89 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-----
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-----
Confidence            5688999999999999999984 44544    588877533 234567899999999999999999999999762     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                          ..++||||+++|+|.+++...  ...+++..++.++.|+++||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus        90 ----~~~~v~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~D  160 (327)
T 3poz_A           90 ----TVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITD  160 (327)
T ss_dssp             ----SEEEEEECCTTCBHHHHHHHS--TTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECC
T ss_pred             ----CeEEEEEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEcc
Confidence                478999999999999999764  3569999999999999999999999   7999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++...........          ....++..|++||.+....++.++|||||||++|||+| |+.||.......+..
T Consensus       161 fg~a~~~~~~~~~~~~----------~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~  230 (327)
T 3poz_A          161 FGLAKLLGAEEKEYHA----------EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS  230 (327)
T ss_dssp             TTHHHHHTTTCC-----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH
T ss_pred             CcceeEccCCcccccc----------cCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHH
Confidence            9999765432221110          01123456889999988999999999999999999999 999998655544444


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      ........        .....++    ..+.+++.+||+.||.+|||+.|++++|+.+.+.
T Consensus       231 ~~~~~~~~--------~~~~~~~----~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~  279 (327)
T 3poz_A          231 ILEKGERL--------PQPPICT----IDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             HHHTTCCC--------CCCTTBC----HHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred             HHHcCCCC--------CCCccCC----HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence            33321110        1112223    3488999999999999999999999999988654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=3.7e-41  Score=374.62  Aligned_cols=257  Identities=19%  Similarity=0.312  Sum_probs=205.8

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ..++|++.+.||+|+||.||+|+..+++.||||+++... ...+.|.+|+++|++++|||||++++++..         .
T Consensus       186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~---------~  255 (454)
T 1qcf_A          186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK---------E  255 (454)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECS---------S
T ss_pred             chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeC---------C
Confidence            346788899999999999999999888999999997533 456789999999999999999999999863         2


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++|||||++|+|.++++... ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus       256 ~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a  331 (454)
T 1qcf_A          256 PIYIITEFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLA  331 (454)
T ss_dssp             SCEEEECCCTTCBHHHHHHSHH-HHTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEECSTTGG
T ss_pred             ccEEEEeecCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEeeCCCc
Confidence            5799999999999999997531 2358899999999999999999999   78999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~  676 (747)
                      +............           ..++..|+|||.+....++.++|||||||++|||+| |+.||.......+......
T Consensus       332 ~~~~~~~~~~~~~-----------~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~  400 (454)
T 1qcf_A          332 RVIEDNEYTAREG-----------AKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALER  400 (454)
T ss_dssp             GGBCCHHHHTTCS-----------SSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHH
T ss_pred             eEcCCCceeccCC-----------CcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence            8765432211110           112346889999988899999999999999999999 9999875443332222211


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ..     .   ......+++    .+.+++.+||+.||++||||.+|++.|+.+.
T Consensus       401 ~~-----~---~~~~~~~~~----~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~  443 (454)
T 1qcf_A          401 GY-----R---MPRPENCPE----ELYNIMMRCWKNRPEERPTFEYIQSVLDDFY  443 (454)
T ss_dssp             TC-----C---CCCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred             CC-----C---CCCCCCCCH----HHHHHHHHHccCChhHCcCHHHHHHHHHHHH
Confidence            11     0   111123333    4889999999999999999999999998653

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=3.9e-41  Score=347.67  Aligned_cols=256  Identities=22%  Similarity=0.311  Sum_probs=204.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|+..++..||||+++... ...+.+.+|++++++++||||+++++++...        ..
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~~   77 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKE--------YP   77 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--------SS
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccC--------Cc
Confidence            46788899999999999999998888899999997533 3446789999999999999999999998763        46


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        78 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  152 (268)
T 3sxs_A           78 IYIVTEYISNGCLLNYLRSH--GKGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTR  152 (268)
T ss_dssp             EEEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEE
T ss_pred             eEEEEEccCCCcHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCccce
Confidence            89999999999999999764  3458999999999999999999999   899999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ...........           ...++..|++||.+....++.++|||||||++|||+| |+.||...............
T Consensus       153 ~~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~  221 (268)
T 3sxs_A          153 YVLDDQYVSSV-----------GTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQG  221 (268)
T ss_dssp             ECCTTCEEECC-----------SCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTT
T ss_pred             ecchhhhhccc-----------CCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcC
Confidence            65433211110           1123446889999888889999999999999999999 89998755433322211111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      .     ....+   ..++    ..+.+++.+||+.||.+|||+.|+++.|+.+.
T Consensus       222 ~-----~~~~~---~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~  263 (268)
T 3sxs_A          222 H-----RLYRP---HLAS----DTIYQIMYSCWHELPEKRPTFQQLLSSIEPLR  263 (268)
T ss_dssp             C-----CCCCC---TTSC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGC
T ss_pred             C-----CCCCC---CcCh----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence            1     00111   1223    34889999999999999999999999998653

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.3e-40  Score=358.03  Aligned_cols=250  Identities=19%  Similarity=0.253  Sum_probs=201.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch------hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .+.|++.+.||+|+||.||+|+. .+|+.||||.++....      ...+.+.+|+.+|++++|||||++++++...   
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~---   87 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENR---   87 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECS---
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeC---
Confidence            46789999999999999999995 5699999999975432      1357889999999999999999999999763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC----
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR----  587 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----  587 (747)
                           ...++||||+++|+|.+++..   ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++    
T Consensus        88 -----~~~~lv~e~~~gg~L~~~l~~---~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~  156 (361)
T 2yab_A           88 -----TDVVLILELVSGGELFDFLAQ---KESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIP  156 (361)
T ss_dssp             -----SEEEEEEECCCSCBHHHHHTT---CSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSC
T ss_pred             -----CEEEEEEEcCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCcc
Confidence                 479999999999999999975   3469999999999999999999999   8999999999999998776    


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      .+||+|||+++........             ...++++.|+|||++....++.++|||||||++|||++|..||.....
T Consensus       157 ~vkl~DFG~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~  223 (361)
T 2yab_A          157 HIKLIDFGLAHEIEDGVEF-------------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK  223 (361)
T ss_dssp             CEEECCCSSCEECCTTCCC-------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH
T ss_pred             CEEEEecCCceEcCCCCcc-------------ccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH
Confidence            7999999999765432111             113467789999999888999999999999999999999999875443


Q ss_pred             hh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          668 FL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       668 ~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .. ...+... ..     .+++......+    ..+.+++.+||..||.+|||+.|+++
T Consensus       224 ~~~~~~i~~~-~~-----~~~~~~~~~~s----~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          224 QETLANITAV-SY-----DFDEEFFSQTS----ELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             HHHHHHHHTT-CC-----CCCHHHHTTSC----HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHhc-CC-----CCCchhccCCC----HHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            32 2222211 10     01111122233    34889999999999999999999985

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=3.8e-41  Score=363.39  Aligned_cols=271  Identities=19%  Similarity=0.241  Sum_probs=210.2

Q ss_pred             CHHHHHHHhhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceee
Q 044236          431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLL  502 (747)
Q Consensus       431 ~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~  502 (747)
                      ...+.....++|++.+.||+|+||.||+|++      .+++.||||+++... ....+.+.+|+++++++ +|||||+++
T Consensus        13 ~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~   92 (359)
T 3vhe_A           13 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   92 (359)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence            3444455678899999999999999999973      346899999997532 33456789999999999 799999999


Q ss_pred             eeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCC------------------------------------------
Q 044236          503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP------------------------------------------  540 (747)
Q Consensus       503 g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~------------------------------------------  540 (747)
                      ++|...+       ...++||||+++|+|.++++....                                          
T Consensus        93 ~~~~~~~-------~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (359)
T 3vhe_A           93 GACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASS  165 (359)
T ss_dssp             EEECSTT-------SCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------
T ss_pred             eeeecCC-------CceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccc
Confidence            9987632       357999999999999999875421                                          


Q ss_pred             ---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          541 ---------------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       541 ---------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                                           ...+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~  242 (359)
T 3vhe_A          166 GFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARD  242 (359)
T ss_dssp             ------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSC
T ss_pred             ccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEeccceee
Confidence                                 1228999999999999999999999   8899999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhh-hHHHHHhcc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAF-LLNEMASFG  677 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~-~~~~~~~~~  677 (747)
                      .........          .....++..|+|||++....++.++|||||||++|||+| |+.||...... .........
T Consensus       243 ~~~~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~  312 (359)
T 3vhe_A          243 IYKDPDYVR----------KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEG  312 (359)
T ss_dssp             TTSCTTCEE----------C--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHT
T ss_pred             ecccccchh----------ccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcC
Confidence            533221111          111345667999999988899999999999999999999 99998754322 221211111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      ..        +.....+++    .+.+++.+||+.||.+|||+.||+++|+.+.+.
T Consensus       313 ~~--------~~~~~~~~~----~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          313 TR--------MRAPDYTTP----EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             CC--------CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CC--------CCCCCCCCH----HHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence            10        111122333    488999999999999999999999999988653

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.5e-41  Score=352.03  Aligned_cols=257  Identities=22%  Similarity=0.309  Sum_probs=199.0

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||.||+|+.. ++.||||++..  ....+.+.+|++++++++||||+++++++.+          ..
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----------~~   74 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIES--ESERKAFIVELRQLSRVNHPNIVKLYGACLN----------PV   74 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSS--TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT----------TT
T ss_pred             hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecC--hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC----------Cc
Confidence            56888899999999999999975 78899999863  3345788999999999999999999998864          36


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc-EEEecccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI-AKLSDYGISI  598 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-~kl~DFGla~  598 (747)
                      ++||||+++|+|.+++........+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+++
T Consensus        75 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~  154 (307)
T 2eva_A           75 CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC  154 (307)
T ss_dssp             EEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--
T ss_pred             EEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccc
Confidence            899999999999999986533335789999999999999999999865568999999999999998876 7999999996


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccC
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .......               ...++..|++||.+....++.++|||||||++|||+||+.||................
T Consensus       155 ~~~~~~~---------------~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~  219 (307)
T 2eva_A          155 DIQTHMT---------------NNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHN  219 (307)
T ss_dssp             -------------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHT
T ss_pred             ccccccc---------------cCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhc
Confidence            5432111               1235667899999988889999999999999999999999987433222111111100


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .      ..+.....++.    .+.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus       220 ~------~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          220 G------TRPPLIKNLPK----PIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             T------CCCCCBTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred             C------CCCCcccccCH----HHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence            0      01112223333    4889999999999999999999999999886543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.1e-40  Score=370.20  Aligned_cols=253  Identities=21%  Similarity=0.321  Sum_probs=203.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|+.. |+.||||+++...  ..+.|.+|+++|++++|||||+++++|....       ..
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-------~~  261 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-------GG  261 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTT-------SC
T ss_pred             hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCC-------Cc
Confidence            457888999999999999999985 7899999997543  4578999999999999999999999987632       36


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++|||||++|+|.++++... ...+++..++.++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus       262 ~~iv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  337 (450)
T 1k9a_A          262 LYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK  337 (450)
T ss_dssp             EEEEEECCTTCBHHHHHHHHC-TTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             eEEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCcc
Confidence            899999999999999998642 3347999999999999999999999   899999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ........               ..++..|+|||.+....++.++|||||||++|||+| |+.||.......+.......
T Consensus       338 ~~~~~~~~---------------~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~  402 (450)
T 1k9a_A          338 EASSTQDT---------------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG  402 (450)
T ss_dssp             ECC---------------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTT
T ss_pred             cccccccC---------------CCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence            43321100               122456889999988899999999999999999999 99998754433322222111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      .        ....+..+++    .+.+++.+||+.||.+|||+.++++.|+.+..
T Consensus       403 ~--------~~~~p~~~~~----~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~  445 (450)
T 1k9a_A          403 Y--------KMDAPDGCPP----AVYDVMKNCWHLDAATRPTFLQLREQLEHIRT  445 (450)
T ss_dssp             C--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             C--------CCCCCCcCCH----HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence            0        1111223343    48899999999999999999999999988754

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=361.53  Aligned_cols=267  Identities=19%  Similarity=0.311  Sum_probs=210.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe--------CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeecc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL--------ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIES  508 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~  508 (747)
                      .++|.+.+.||+|+||.||+|+.        ..+..||||+++.. .....+.+.+|+++++++ +|||||+++++|...
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            46788899999999999999984        22468999999754 234457889999999999 999999999999763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                              ...++||||+++|+|.+++.....             ...+++..++.++.|++.||+|||+   .+|+|||
T Consensus       148 --------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~D  216 (382)
T 3tt0_A          148 --------GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRD  216 (382)
T ss_dssp             --------SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             --------CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCEecCC
Confidence                    368999999999999999975421             2459999999999999999999999   7999999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      |||+|||++.++.+||+|||+++............          ...++..|+|||.+....++.++|||||||++|||
T Consensus       217 lkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~----------~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el  286 (382)
T 3tt0_A          217 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTT----------NGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI  286 (382)
T ss_dssp             CCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCT----------TCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEcCCCcEEEcccCccccccccccccccc----------CCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHH
Confidence            99999999999999999999997654322111100          01234568899999888999999999999999999


Q ss_pred             hh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          656 LV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       656 lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      +| |..|+.......+........        .+.....++.    .+.+++.+||+.||++|||+.||+++|+.+....
T Consensus       287 lt~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  354 (382)
T 3tt0_A          287 FTLGGSPYPGVPVEELFKLLKEGH--------RMDKPSNCTN----ELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT  354 (382)
T ss_dssp             HTTSCCSSTTCCHHHHHHHHHTTC--------CCCCCSSCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             HhCCCCCCCCCCHHHHHHHHHcCC--------CCCCCccCCH----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence            99 899987655443333222111        1111123333    4889999999999999999999999999887655


Q ss_pred             hhcc
Q 044236          735 ATAD  738 (747)
Q Consensus       735 ~~~~  738 (747)
                      ...+
T Consensus       355 ~~~~  358 (382)
T 3tt0_A          355 SNQE  358 (382)
T ss_dssp             CSCC
T ss_pred             hcCC
Confidence            4443

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=5.5e-41  Score=356.88  Aligned_cols=259  Identities=20%  Similarity=0.320  Sum_probs=202.1

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcE----EEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTY----VAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|++.+.||+|+||.||+|+. .+++.    ||+|.+.... ....+.+.+|+.++++++|||||+++++|..      
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   86 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG------   86 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB------
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC------
Confidence            5688899999999999999984 44554    7788775332 2333567789999999999999999999854      


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus        87 ---~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~D  158 (325)
T 3kex_A           87 ---SSLQLVTQYLPLGSLLDHVRQH--RGALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVAD  158 (325)
T ss_dssp             ---SSEEEEEECCTTCBSHHHHHSS--GGGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECS
T ss_pred             ---CccEEEEEeCCCCCHHHHHHHc--cccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECC
Confidence               2589999999999999998754  3468999999999999999999999   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++..........          .....++..|++||.+....++.++|||||||++|||+| |+.||.......+..
T Consensus       159 fg~a~~~~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~  228 (325)
T 3kex_A          159 FGVADLLPPDDKQLL----------YSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPD  228 (325)
T ss_dssp             CSGGGGSCCCTTCCC---------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHH
T ss_pred             CCcccccCccccccc----------ccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHH
Confidence            999987643322110          111234557899999988899999999999999999999 999997655444333


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .........        ....++.    .+.+++.+||+.||.+|||+.|++++|+.+.+..
T Consensus       229 ~~~~~~~~~--------~~~~~~~----~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~  278 (325)
T 3kex_A          229 LLEKGERLA--------QPQICTI----DVYMVMVKCWMIDENIRPTFKELANEFTRMARDP  278 (325)
T ss_dssp             HHHTTCBCC--------CCTTBCT----TTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred             HHHcCCCCC--------CCCcCcH----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence            322211110        1111222    2778999999999999999999999999886544

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.7e-41  Score=350.89  Aligned_cols=260  Identities=17%  Similarity=0.211  Sum_probs=203.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+++.||||++...   .....+.+.+|+.++++++||||+++++++...       
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-------   83 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEED-------   83 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECS-------
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeC-------
Confidence            5788999999999999999984 56899999998643   234456789999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        84 -~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg  156 (294)
T 4eqm_A           84 -DCYYLVMEYIEGPTLSEYIESH---GPLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFG  156 (294)
T ss_dssp             -SEEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCS
T ss_pred             -CeEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCC
Confidence             4789999999999999999763   458999999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++.........           .....++..|++||.+....++.++|||||||++|||+||+.||.............
T Consensus       157 ~~~~~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~  225 (294)
T 4eqm_A          157 IAKALSETSLTQ-----------TNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHI  225 (294)
T ss_dssp             SSTTC------------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHH
T ss_pred             Cccccccccccc-----------cCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHh
Confidence            997654322111           011346778999999988889999999999999999999999997654332211111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-CHHHHHHHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-SFEDVLWNLQYAAQ  732 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~evl~~L~~~~~  732 (747)
                      .  . .. ..........++    ..+.+++.+||+.||.+|| +++++.+.|+.+..
T Consensus       226 ~--~-~~-~~~~~~~~~~~~----~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~  275 (294)
T 4eqm_A          226 Q--D-SV-PNVTTDVRKDIP----QSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH  275 (294)
T ss_dssp             S--S-CC-CCHHHHSCTTSC----HHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred             h--c-cC-CCcchhcccCCC----HHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence            0  0 00 001111122233    3488999999999999999 89999999886644

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-40  Score=353.38  Aligned_cols=252  Identities=13%  Similarity=0.155  Sum_probs=202.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.||+|.+... ......+.+|+++++.++||||+++++++...        .
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~--------~   74 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESM--------E   74 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEET--------T
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecC--------C
Confidence            46788999999999999999995 56899999998743 33456788999999999999999999999773        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC--CCcEEEeccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE--HRIAKLSDYG  595 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--~~~~kl~DFG  595 (747)
                      ..++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.  ++.+||+|||
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg  149 (321)
T 1tki_A           75 ELVMIFEFISGLDIFERINTS--AFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFG  149 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSS--SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred             EEEEEEEeCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECC
Confidence            799999999999999999753  3468999999999999999999999   89999999999999987  7899999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~  674 (747)
                      +++.......             .....+++.|++||++....++.++|||||||++|||++|..||....... ...+.
T Consensus       150 ~a~~~~~~~~-------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~  216 (321)
T 1tki_A          150 QARQLKPGDN-------------FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIM  216 (321)
T ss_dssp             TCEECCTTCE-------------EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH
T ss_pred             CCeECCCCCc-------------cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHH
Confidence            9976543221             112356678999999988888999999999999999999999987544332 22222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ... ..     .++.....++    ..+.+++.+||+.||.+|||+.|++++-
T Consensus       217 ~~~-~~-----~~~~~~~~~s----~~~~~li~~~L~~dp~~Rpt~~e~l~hp  259 (321)
T 1tki_A          217 NAE-YT-----FDEEAFKEIS----IEAMDFVDRLLVKERKSRMTASEALQHP  259 (321)
T ss_dssp             HTC-CC-----CCHHHHTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred             cCC-CC-----CChhhhccCC----HHHHHHHHHHcCCChhHCcCHHHHhcCh
Confidence            211 00     1111112233    3488999999999999999999998754

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.4e-40  Score=346.28  Aligned_cols=252  Identities=18%  Similarity=0.233  Sum_probs=193.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--------------------------hcHHHHHHHHHHHh
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--------------------------YSIQNLKVRLDFLS  491 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--------------------------~~~~~~~~E~~~l~  491 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++.....                          ...+.+.+|+++++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            36789999999999999999984 5689999999974321                          11356889999999


Q ss_pred             cCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 044236          492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGS  571 (747)
Q Consensus       492 ~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i  571 (747)
                      +++||||+++++++....      ....++||||+++|+|.+++..    ..+++..+..++.|+++||+|||+   .+|
T Consensus        92 ~l~h~~iv~~~~~~~~~~------~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i  158 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPN------EDHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLHY---QKI  158 (298)
T ss_dssp             TCCCTTBCCEEEEEECSS------SSEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             hCCCCCCCeEEEEEEcCC------CCEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCe
Confidence            999999999999987632      3578999999999999987653    469999999999999999999999   799


Q ss_pred             ccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC---CCcCCceeeh
Q 044236          572 FSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR---TKLEDDVYNF  648 (747)
Q Consensus       572 vHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~s~k~DVwSf  648 (747)
                      +||||||+|||++.++.+||+|||+++.........            ....++..|+|||.+....   ++.++|||||
T Consensus       159 vH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~sl  226 (298)
T 2zv2_A          159 IHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALL------------SNTVGTPAFMAPESLSETRKIFSGKALDVWAM  226 (298)
T ss_dssp             ECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEE------------CCCCSCGGGCCGGGCCTTCCCEESHHHHHHHH
T ss_pred             eccCCCHHHEEECCCCCEEEecCCCccccccccccc------------cCCcCCccccChhhhccCCCCCCCchhhhHhH
Confidence            999999999999999999999999997654322110            0124566788999887654   3778999999


Q ss_pred             hHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          649 GFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       649 Gvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ||++|||++|+.||.................    ..   .....+++    .+.+++.+||+.||++|||+.|+++.
T Consensus       227 G~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~----~~---~~~~~~~~----~l~~li~~~l~~dp~~R~s~~e~l~h  293 (298)
T 2zv2_A          227 GVTLYCFVFGQCPFMDERIMCLHSKIKSQAL----EF---PDQPDIAE----DLKDLITRMLDKNPESRIVVPEIKLH  293 (298)
T ss_dssp             HHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC----CC---CSSSCCCH----HHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCCccHHHHHHHHhcccC----CC---CCccccCH----HHHHHHHHHhhcChhhCCCHHHHhcC
Confidence            9999999999999976544332221111100    00   01122333    48899999999999999999999753

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=2.1e-41  Score=360.44  Aligned_cols=279  Identities=19%  Similarity=0.243  Sum_probs=207.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|++     .+++.||||++........+.+.+|++++++++||||+++++++...+     
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----   97 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPG-----   97 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCC-----
Confidence            5788999999999999999984     458999999998766666678999999999999999999999987532     


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       ....++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        98 -~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Df  171 (327)
T 3lxl_A           98 -RQSLRLVMEYLPSGCLRDFLQRH--RARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADF  171 (327)
T ss_dssp             -SCEEEEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCG
T ss_pred             -CceEEEEEeecCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEccc
Confidence             45789999999999999999753  2358999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++............         ....++..|++||.+....++.++|||||||++|||++|..|+..........+.
T Consensus       172 g~~~~~~~~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~  242 (327)
T 3lxl_A          172 GLAKLLPLDKDYYVVR---------EPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMG  242 (327)
T ss_dssp             GGCEECCTTCSEEECS---------SCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC
T ss_pred             ccceecccCCccceee---------ccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcc
Confidence            9997654322211110         0112345588999888888899999999999999999999888644332211110


Q ss_pred             hccCcCC---ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhhcc
Q 044236          675 SFGSQDG---RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATAD  738 (747)
Q Consensus       675 ~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~~~  738 (747)
                      .......   .............+......+.+++.+||+.||.+|||+.|++++|+.+......++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~  309 (327)
T 3lxl_A          243 CERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGCE  309 (327)
T ss_dssp             ----CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC--------
T ss_pred             cccccccHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCcc
Confidence            0000000   000001111111122333458899999999999999999999999997765444333

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=5.2e-41  Score=377.08  Aligned_cols=256  Identities=19%  Similarity=0.297  Sum_probs=205.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+.. ++..||||+++... ...+.|.+|+++|++++|||||+++++|...        .
T Consensus       219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~--------~  289 (495)
T 1opk_A          219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--------P  289 (495)
T ss_dssp             GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--------S
T ss_pred             HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecC--------C
Confidence            456888899999999999999965 48999999997543 3467899999999999999999999999763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++|||||++|+|.++++... ...+++..++.++.||++||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus       290 ~~~lv~E~~~~g~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a  365 (495)
T 1opk_A          290 PFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLS  365 (495)
T ss_dssp             SCEEEEECCTTCBHHHHHHHSC-TTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCE
T ss_pred             cEEEEEEccCCCCHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeecccc
Confidence            6899999999999999997542 3468999999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~  676 (747)
                      +...........           ...++..|+|||.+....++.++|||||||++|||+| |+.|+.......+......
T Consensus       366 ~~~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~  434 (495)
T 1opk_A          366 RLMTGDTYTAHA-----------GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK  434 (495)
T ss_dssp             ECCTTCCEECCT-----------TCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHT
T ss_pred             eeccCCceeecC-----------CCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence            876432211110           0122346889999988889999999999999999999 8889876554433332221


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ..        .......++    ..+.+++.+||+.||.+||||.||++.|+.+
T Consensus       435 ~~--------~~~~~~~~~----~~l~~li~~cl~~dP~~RPs~~el~~~L~~~  476 (495)
T 1opk_A          435 DY--------RMERPEGCP----EKVYELMRACWQWNPSDRPSFAEIHQAFETM  476 (495)
T ss_dssp             TC--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             CC--------CCCCCCCCC----HHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence            11        011112233    3488999999999999999999999999865

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.7e-40  Score=345.59  Aligned_cols=259  Identities=21%  Similarity=0.282  Sum_probs=195.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC----CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||.||+|+..    .+..||||+++... ....+.+.+|+.++++++||||+++++++.+      
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   87 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE------   87 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS------
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc------
Confidence            467888999999999999999853    25679999987532 3445678999999999999999999999753      


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         +..++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        88 ---~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~D  159 (281)
T 1mp8_A           88 ---NPVWIIMELCTLGELRSFLQVR--KYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGD  159 (281)
T ss_dssp             ---SSCEEEEECCTTEEHHHHHHHT--TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC
T ss_pred             ---CccEEEEecCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEECc
Confidence               2579999999999999999754  3468999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++..........           ....++..|++||.+....++.++|||||||++|||++ |..||..........
T Consensus       160 fg~~~~~~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~  228 (281)
T 1mp8_A          160 FGLSRYMEDSTYYKA-----------SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIG  228 (281)
T ss_dssp             ------------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH
T ss_pred             cccccccCccccccc-----------ccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence            999976543221111           01123446889999988899999999999999999997 888887544332222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ......        .+.....++    ..+.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus       229 ~i~~~~--------~~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  278 (281)
T 1mp8_A          229 RIENGE--------RLPMPPNCP----PTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE  278 (281)
T ss_dssp             HHHTTC--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCC--------CCCCCCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            111110        011122333    34889999999999999999999999999887654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=3.1e-40  Score=358.16  Aligned_cols=252  Identities=15%  Similarity=0.243  Sum_probs=203.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||+|.+..........+.+|+++|++++|||||++++++...        .
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~--------~  121 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDK--------Y  121 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECS--------S
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeC--------C
Confidence            46799999999999999999985 56899999999865555567889999999999999999999999763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC--CCcEEEeccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE--HRIAKLSDYG  595 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--~~~~kl~DFG  595 (747)
                      ..++||||+++|+|.+++...  ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.  ++.+||+|||
T Consensus       122 ~~~lv~E~~~gg~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG  196 (387)
T 1kob_A          122 EMVLILEFLSGGELFDRIAAE--DYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFG  196 (387)
T ss_dssp             EEEEEEECCCCCBHHHHTTCT--TCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCT
T ss_pred             EEEEEEEcCCCCcHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEecc
Confidence            799999999999999998753  3469999999999999999999999   89999999999999974  5789999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      +++........             ....++..|+|||++....++.++|||||||++|||++|..||...... .+..+.
T Consensus       197 ~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~  263 (387)
T 1kob_A          197 LATKLNPDEIV-------------KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVK  263 (387)
T ss_dssp             TCEECCTTSCE-------------EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHH
T ss_pred             cceecCCCcce-------------eeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            99765432111             1234677899999998888999999999999999999999998754432 222222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....      ..++.....+++    .+.+++.+||+.||.+|||+.|+++.
T Consensus       264 ~~~~------~~~~~~~~~~s~----~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          264 RCDW------EFDEDAFSSVSP----EAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             HCCC------CCCSSTTTTSCH----HHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hCCC------CCCccccccCCH----HHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            2111      011111222333    48899999999999999999999863

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-40  Score=356.00  Aligned_cols=262  Identities=22%  Similarity=0.299  Sum_probs=206.7

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      ..++|++.+.||+|+||.||+|+..      +++.||||+++... ....+.+.+|+.++++++||||++++++|...  
T Consensus        45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--  122 (343)
T 1luf_A           45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG--  122 (343)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS--
T ss_pred             cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC--
Confidence            4578999999999999999999863      35899999997543 33456789999999999999999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCC---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCP---------------------ENVLKWSDRLAILIGVAKAVHFLHSSVIS  569 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  569 (747)
                            ...++||||+++|+|.+++.....                     ...+++.+++.++.||++||+|||+   .
T Consensus       123 ------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~---~  193 (343)
T 1luf_A          123 ------KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---R  193 (343)
T ss_dssp             ------SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             ------CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence                  368999999999999999875321                     1568999999999999999999999   8


Q ss_pred             CcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehh
Q 044236          570 GSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFG  649 (747)
Q Consensus       570 ~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfG  649 (747)
                      +|+||||||+|||++.++.+||+|||+++...........          ....++..|++||.+....++.++||||||
T Consensus       194 ~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~----------~~~~~t~~y~aPE~~~~~~~~~~~Di~slG  263 (343)
T 1luf_A          194 KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKAD----------GNDAIPIRWMPPESIFYNRYTTESDVWAYG  263 (343)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC--------------CCBCGGGCCHHHHHHCCCCHHHHHHHHH
T ss_pred             CeecCCCCcceEEECCCCeEEEeecCCCcccccCcccccc----------CCCcccceecChhhhccCCcCcccccHHHH
Confidence            9999999999999999999999999999765432211110          012345568899998888999999999999


Q ss_pred             HHHHHHhh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          650 FILLESLV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       650 vvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      |++|||+| |..||................   .     +.....++    ..+.+++.+||+.||.+|||+.|+++.|+
T Consensus       264 ~il~el~t~g~~p~~~~~~~~~~~~~~~~~---~-----~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~~~~~L~  331 (343)
T 1luf_A          264 VVLWEIFSYGLQPYYGMAHEEVIYYVRDGN---I-----LACPENCP----LELYNLMRLCWSKLPADRPSFCSIHRILQ  331 (343)
T ss_dssp             HHHHHHHTTTCCTTTTSCHHHHHHHHHTTC---C-----CCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcCCCCChHHHHHHHhCCC---c-----CCCCCCCC----HHHHHHHHHHcccCcccCCCHHHHHHHHH
Confidence            99999999 888887654433322221111   0     11112233    34889999999999999999999999998


Q ss_pred             HHHH
Q 044236          729 YAAQ  732 (747)
Q Consensus       729 ~~~~  732 (747)
                      .+..
T Consensus       332 ~~~~  335 (343)
T 1luf_A          332 RMCE  335 (343)
T ss_dssp             HTTC
T ss_pred             HHHh
Confidence            7643

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.1e-40  Score=360.34  Aligned_cols=277  Identities=10%  Similarity=0.094  Sum_probs=205.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCC------CcEEEEEEeeccchh-----------cHHHHHHHHHHHhcCCCCCccee
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKY-----------SIQNLKVRLDFLSKLQHPHLVSL  501 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vAvK~l~~~~~~-----------~~~~~~~E~~~l~~l~H~nIv~l  501 (747)
                      .++|.+.+.||+|+||.||+|+...      ++.||||++......           ....+..|+..++.++||||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4578999999999999999998644      478999998754321           11234456667788899999999


Q ss_pred             eeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       502 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                      ++++....    ......++||||+ +|+|.+++...  ...+++..++.++.||+.||+|||+   .+|+||||||+||
T Consensus       114 ~~~~~~~~----~~~~~~~lv~e~~-g~~L~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Ni  183 (364)
T 3op5_A          114 WGSGLHDK----NGKSYRFMIMDRF-GSDLQKIYEAN--AKRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNL  183 (364)
T ss_dssp             EEEEEEEE----TTEEEEEEEEECE-EEEHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGE
T ss_pred             Eeeeeecc----CCcceEEEEEeCC-CCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHE
Confidence            99987632    1124689999999 99999999764  3569999999999999999999999   8999999999999


Q ss_pred             eec--CCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCC
Q 044236          582 LLD--EHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP  659 (747)
Q Consensus       582 Lld--~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~  659 (747)
                      |++  .++.+||+|||+++.............     .......++..|++||.+....++.++|||||||++|||+||+
T Consensus       184 ll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~  258 (364)
T 3op5_A          184 LLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAA-----DPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGH  258 (364)
T ss_dssp             EEESSCTTCEEECCCTTCEESSGGGCCCCSSC-----CSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             EEecCCCCeEEEEECCcceecccCCccccccc-----CcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCC
Confidence            999  889999999999987654332111100     0111235778899999998888999999999999999999999


Q ss_pred             CCCCCChhh-hHHHHHhccCcCCcccccccccc-CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          660 IVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVL-TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       660 ~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .||...... ................++++.+. ..++.    .+.+++..||+.||.+||++.+|++.|+.+....
T Consensus       259 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~  331 (364)
T 3op5_A          259 LPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPG----EIAKYMETVKLLDYTEKPLYENLRDILLQGLKAI  331 (364)
T ss_dssp             CTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCH----HHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             CCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHH----HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHc
Confidence            999742211 11111111111112222222211 22333    4889999999999999999999999999886643

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.4e-40  Score=341.46  Aligned_cols=256  Identities=23%  Similarity=0.351  Sum_probs=205.5

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||.||+|+..+++.||||++.... ...+.+.+|++++++++||||+++++++...        ...
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~~~   78 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ--------API   78 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSS--------SSC
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEccC--------CCe
Confidence            5688899999999999999998888999999997543 2346789999999999999999999998763        368


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        79 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~  153 (267)
T 3t9t_A           79 CLVTEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  153 (267)
T ss_dssp             EEEECCCTTCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             EEEEeCCCCCcHHHHHhhC--cccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEcccccccc
Confidence            9999999999999999764  3468999999999999999999999   8899999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ...........           ..++..|++||.+....++.++||||||+++|||++ |+.|+................
T Consensus       154 ~~~~~~~~~~~-----------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~  222 (267)
T 3t9t_A          154 VLDDQYTSSTG-----------TKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGF  222 (267)
T ss_dssp             BCCHHHHSTTS-----------TTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTC
T ss_pred             ccccccccccc-----------ccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCC
Confidence            54322211110           122346788998888889999999999999999999 899987654333222111110


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      .        +.....++    ..+.+++.+||+.||++|||+.|++++|+.+..
T Consensus       223 ~--------~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          223 R--------LYKPRLAS----THVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             C--------CCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             c--------CCCCccCc----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            0        11111223    348899999999999999999999999998865

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=7.1e-41  Score=359.05  Aligned_cols=247  Identities=21%  Similarity=0.268  Sum_probs=197.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++..   .....+.+.+|..+++.+ +|||||++++++...     
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~-----   96 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTP-----   96 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-----
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeC-----
Confidence            57899999999999999999995 56899999999743   234556788999999988 699999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++|||||++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus        97 ---~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~D  167 (353)
T 3txo_A           97 ---DRLFFVMEFVNGGDLMFHIQKS---RRFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLAD  167 (353)
T ss_dssp             ---SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             ---CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEcc
Confidence               4799999999999999999763   458999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~  672 (747)
                      ||+++........            ....++++.|+|||++....++.++|||||||++|||++|+.||.......+ ..
T Consensus       168 FG~a~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~  235 (353)
T 3txo_A          168 FGMCKEGICNGVT------------TATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEA  235 (353)
T ss_dssp             CTTCBCSCC---------------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred             ccceeecccCCcc------------ccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHH
Confidence            9999753221111            1124678889999999988999999999999999999999999976544332 22


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH------HHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF------EDVLW  725 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~------~evl~  725 (747)
                      +... .         ...+...+    ..+.+++.+||+.||.+||++      .||++
T Consensus       236 i~~~-~---------~~~p~~~~----~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          236 ILND-E---------VVYPTWLH----EDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             HHHC-C---------CCCCTTSC----HHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             HHcC-C---------CCCCCCCC----HHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence            2211 0         11111223    347889999999999999998      77764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=2.6e-40  Score=345.18  Aligned_cols=252  Identities=22%  Similarity=0.366  Sum_probs=196.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchh-------cHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKY-------SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~-------~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++......       ..+.+.+|++++++++||||+++++++...  
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--   95 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP--   95 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT--
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC--
Confidence            36788899999999999999995 57999999998643221       126789999999999999999999998652  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceeecCCCc
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG--SFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--ivHrDlk~~NILld~~~~  588 (747)
                              .++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+  |+||||||+|||++.++.
T Consensus        96 --------~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~lH~---~~~~ivH~dikp~Nil~~~~~~  162 (287)
T 4f0f_A           96 --------PRMVMEFVPCGDLYHRLLDK--AHPIKWSVKLRLMLDIALGIEYMQN---QNPPIVHRDLRSPNIFLQSLDE  162 (287)
T ss_dssp             --------TEEEEECCTTCBHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCSCCSGGGEEESCCCT
T ss_pred             --------CeEEEEecCCCCHHHHHhcc--cCCccHHHHHHHHHHHHHHHHHHHh---CCCCeecCCCCcceEEEeccCC
Confidence                    27999999999999888654  4469999999999999999999999   66  999999999999988776


Q ss_pred             -----EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeee--eccCCCcCCceeehhHHHHHHhhCCCC
Q 044236          589 -----AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVV--DIQRTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       589 -----~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                           +||+|||+++.......               ...++..|++||.+  ....++.++|||||||++|||++|+.|
T Consensus       163 ~~~~~~kl~Dfg~~~~~~~~~~---------------~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p  227 (287)
T 4f0f_A          163 NAPVCAKVADFGLSQQSVHSVS---------------GLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGP  227 (287)
T ss_dssp             TCSCCEEECCCTTCBCCSSCEE---------------CCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCT
T ss_pred             CCceeEEeCCCCcccccccccc---------------ccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCC
Confidence                 99999999964332110               12356678889987  345578899999999999999999999


Q ss_pred             CCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      |..................     ..+.....++    ..+.+++.+||+.||.+|||+.|+++.|+.
T Consensus       228 f~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~L~~  286 (287)
T 4f0f_A          228 FDEYSYGKIKFINMIREEG-----LRPTIPEDCP----PRLRNVIELCWSGDPKKRPHFSYIVKELSE  286 (287)
T ss_dssp             TTTCCCCHHHHHHHHHHSC-----CCCCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CccccccHHHHHHHHhccC-----CCCCCCcccC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence            9754332222111111000     1122222333    348899999999999999999999999874

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.8e-40  Score=356.61  Aligned_cols=255  Identities=17%  Similarity=0.231  Sum_probs=201.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      .+.|++.+.||+|+||.||+|+. .+|+.||||+++...     ....+.+.+|+.++++++|||||++++++...    
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~----   98 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSD----   98 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEET----
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeC----
Confidence            35689999999999999999985 579999999997432     12467899999999999999999999999873    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc---
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI---  588 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---  588 (747)
                          ...++|||||++|+|.+++.... ....+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.   
T Consensus        99 ----~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~  171 (351)
T 3c0i_A           99 ----GMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAP  171 (351)
T ss_dssp             ----TEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCC
T ss_pred             ----CEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCc
Confidence                47899999999999988776431 23458999999999999999999999   89999999999999986554   


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      +||+|||+++.........            ...+++..|+|||++....++.++|||||||++|||++|+.||......
T Consensus       172 vkl~Dfg~a~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~  239 (351)
T 3c0i_A          172 VKLGGFGVAIQLGESGLVA------------GGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKER  239 (351)
T ss_dssp             EEECCCTTCEECCTTSCBC------------CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHH
T ss_pred             EEEecCcceeEecCCCeee------------cCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHH
Confidence            9999999997654322110            1124677899999998888999999999999999999999999876544


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....+.....      ..++.....++    ..+.+++.+||+.||++|||+.|++++
T Consensus       240 ~~~~i~~~~~------~~~~~~~~~~s----~~~~~li~~~L~~dP~~R~s~~e~l~h  287 (351)
T 3c0i_A          240 LFEGIIKGKY------KMNPRQWSHIS----ESAKDLVRRMLMLDPAERITVYEALNH  287 (351)
T ss_dssp             HHHHHHHTCC------CCCHHHHTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHcCCC------CCCccccccCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            3333322110      01111112223    348899999999999999999999863

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=350.06  Aligned_cols=250  Identities=19%  Similarity=0.276  Sum_probs=200.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch------hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .+.|.+.+.||+|+||.||+|+. .+|+.||||+++....      ...+.+.+|+.++++++|||||++++++...   
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~---   86 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK---   86 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS---
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeC---
Confidence            35688999999999999999995 5699999999975332      2467899999999999999999999999763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC----
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR----  587 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----  587 (747)
                           ...++||||+++|+|.+++..   ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++    
T Consensus        87 -----~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~  155 (326)
T 2y0a_A           87 -----TDVILILELVAGGELFDFLAE---KESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKP  155 (326)
T ss_dssp             -----SEEEEEEECCCSCBHHHHHTT---SSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSSSC
T ss_pred             -----CEEEEEEEcCCCCCHHHHHHh---cCCcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHHHEEEecCCCCCC
Confidence                 478999999999999999975   3468999999999999999999999   8999999999999999887    


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      .+||+|||+++........             ....++..|+|||++....++.++|||||||++|||++|..||.....
T Consensus       156 ~~kl~Dfg~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  222 (326)
T 2y0a_A          156 RIKIIDFGLAHKIDFGNEF-------------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK  222 (326)
T ss_dssp             CEEECCCTTCEECCTTSCC-------------CCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH
T ss_pred             CEEEEECCCCeECCCCCcc-------------ccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH
Confidence            8999999999765422111             112467789999999888999999999999999999999999865433


Q ss_pred             h-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          668 F-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       668 ~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      . ....+.... ..     ..+.....++    ..+.+++.+||+.||.+|||+.|+++
T Consensus       223 ~~~~~~~~~~~-~~-----~~~~~~~~~~----~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          223 QETLANVSAVN-YE-----FEDEYFSNTS----ALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             HHHHHHHHHTC-CC-----CCHHHHTTSC----HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHhcC-CC-----cCccccccCC----HHHHHHHHHHccCChhhCCCHHHHhc
Confidence            2 222222211 00     0111112223    34789999999999999999999986

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1.3e-40  Score=354.97  Aligned_cols=272  Identities=18%  Similarity=0.297  Sum_probs=199.6

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC----
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ----  511 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~----  511 (747)
                      ..++|++.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|+++|++++|||||+++++|.+....    
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   83 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE   83 (332)
T ss_dssp             HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred             hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence            3567899999999999999999964 79999999997543 33557899999999999999999999998763210    


Q ss_pred             ---------------------------------------------CCCCCceEEEEEeccCCCCcccccccCCCCCCCCH
Q 044236          512 ---------------------------------------------DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKW  546 (747)
Q Consensus       512 ---------------------------------------------~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~  546 (747)
                                                                   ........++||||+++|+|.+++.........++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  163 (332)
T 3qd2_B           84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH  163 (332)
T ss_dssp             HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred             hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence                                                         00112348999999999999999987654456778


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecC
Q 044236          547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS  626 (747)
Q Consensus       547 ~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (747)
                      ..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.........................++.
T Consensus       164 ~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  240 (332)
T 3qd2_B          164 GVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK  240 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred             HHHHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence            8899999999999999999   8999999999999999999999999999987654322111000000000111235677


Q ss_pred             CcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHH
Q 044236          627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT  706 (747)
Q Consensus       627 ~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~  706 (747)
                      .|+|||.+....++.++|||||||++|||++|..|+.... ........    ..     .+.    ........+.+++
T Consensus       241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~-~~~~~~~~----~~-----~~~----~~~~~~~~~~~li  306 (332)
T 3qd2_B          241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV-RIITDVRN----LK-----FPL----LFTQKYPQEHMMV  306 (332)
T ss_dssp             GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH-HHHHHHHT----TC-----CCH----HHHHHCHHHHHHH
T ss_pred             CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH-HHHHHhhc----cC-----CCc----ccccCChhHHHHH
Confidence            8999999988899999999999999999999866542111 11111111    00     010    1123334578899


Q ss_pred             hHccCCCCCCCCCHHHHHHH
Q 044236          707 NKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       707 ~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+||+.||++|||+.|++++
T Consensus       307 ~~~l~~~p~~Rps~~~~l~~  326 (332)
T 3qd2_B          307 QDMLSPSPTERPEATDIIEN  326 (332)
T ss_dssp             HHHHCSSGGGSCCHHHHHHS
T ss_pred             HHHccCCCCcCCCHHHHhhc
Confidence            99999999999999999863

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.4e-40  Score=350.10  Aligned_cols=261  Identities=24%  Similarity=0.322  Sum_probs=206.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|.+.+.||+|+||.||+|+.      .+++.||||+++.. .....+.+.+|++++++++||||+++++++...   
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~---   98 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD---   98 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecC---
Confidence            46788899999999999999984      34589999999753 234557889999999999999999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCC---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCP---------------------ENVLKWSDRLAILIGVAKAVHFLHSSVISG  570 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  570 (747)
                           ...++||||+++|+|.+++.....                     ...+++..+..++.|+++||+|||+   .+
T Consensus        99 -----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~  170 (314)
T 2ivs_A           99 -----GPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MK  170 (314)
T ss_dssp             -----SSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             -----CceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH---CC
Confidence                 368999999999999999975421                     2348999999999999999999999   88


Q ss_pred             cccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhH
Q 044236          571 SFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF  650 (747)
Q Consensus       571 ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGv  650 (747)
                      |+||||||+||+++.++.+||+|||+++...........          ....++..|++||.+....++.++|||||||
T Consensus       171 ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  240 (314)
T 2ivs_A          171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKR----------SQGRIPVKWMAIESLFDHIYTTQSDVWSFGV  240 (314)
T ss_dssp             EECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECS----------SCCCSCGGGCCHHHHHHCEECHHHHHHHHHH
T ss_pred             CcccccchheEEEcCCCCEEEccccccccccccccceec----------cCCCCcccccChhhhcCCCcCchhhHHHHHH
Confidence            999999999999999999999999999765432221110          0112345688999888888999999999999


Q ss_pred             HHHHHhh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          651 ILLESLV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       651 vl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      ++|||+| |+.|+.......+........        .+.....++    ..+.+++.+||+.||.+|||+.|++++|+.
T Consensus       241 il~el~t~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~l~~~l~~  308 (314)
T 2ivs_A          241 LLWEIVTLGGNPYPGIPPERLFNLLKTGH--------RMERPDNCS----EEMYRLMLQCWKQEPDKRPVFADISKDLEK  308 (314)
T ss_dssp             HHHHHHTTSCCSSTTCCGGGHHHHHHTTC--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCCCCHHHHHHHhhcCC--------cCCCCccCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence            9999999 999987655443333222111        011112233    348899999999999999999999999998


Q ss_pred             HHH
Q 044236          730 AAQ  732 (747)
Q Consensus       730 ~~~  732 (747)
                      +..
T Consensus       309 ~~~  311 (314)
T 2ivs_A          309 MMV  311 (314)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=6.1e-40  Score=362.00  Aligned_cols=254  Identities=20%  Similarity=0.252  Sum_probs=200.9

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|++.+.||+|+||.||+|. ..+|+.||+|++....  ....+.+.+|++++++++|||||++++++.+.      
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~------   82 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEE------   82 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECS------
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEEC------
Confidence            35679999999999999999998 4679999999997543  33456789999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec---CCCcEEE
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD---EHRIAKL  591 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl  591 (747)
                        ...++|||||++|+|.+++...   ..+++..+..++.||+.||.|||+   .+|+||||||+|||++   .++.+||
T Consensus        83 --~~~~lv~E~~~gg~L~~~i~~~---~~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL  154 (444)
T 3soa_A           83 --GHHYLIFDLVTGGELFEDIVAR---EYYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKL  154 (444)
T ss_dssp             --SEEEEEECCCBCCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEE
T ss_pred             --CEEEEEEEeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEE
Confidence              4889999999999999988763   458999999999999999999999   8999999999999998   5678999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      +|||+++........            ....++++.|+|||++....++.++|||||||++|||++|..||.........
T Consensus       155 ~DFG~a~~~~~~~~~------------~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~  222 (444)
T 3soa_A          155 ADFGLAIEVEGEQQA------------WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLY  222 (444)
T ss_dssp             CCCSSCBCCCTTCCB------------CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred             ccCceeEEecCCCce------------eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHH
Confidence            999999765432211            01135677899999998888999999999999999999999998765443322


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........    ...+ ....++    ..+.+++.+||+.||.+|||+.|++++
T Consensus       223 ~~i~~~~~~----~~~~-~~~~~s----~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          223 QQIKAGAYD----FPSP-EWDTVT----PEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             HHHHHTCCC----CCTT-TTTTSC----HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHhCCCC----CCcc-ccccCC----HHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            222211111    1111 112233    348899999999999999999999863

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=8.9e-41  Score=371.18  Aligned_cols=256  Identities=21%  Similarity=0.295  Sum_probs=200.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|+..++..||||+++... ...+.|.+|+++|++++|||||++++++..         ..
T Consensus       183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~---------~~  252 (452)
T 1fmk_A          183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE---------EP  252 (452)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS---------SS
T ss_pred             hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC---------Cc
Confidence            45688889999999999999998888889999997543 345789999999999999999999999864         25


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++|||||++|+|.++++... ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus       253 ~~iv~e~~~~gsL~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  328 (452)
T 1fmk_A          253 IYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  328 (452)
T ss_dssp             CEEEECCCTTCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             eEEEehhhcCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCCccce
Confidence            799999999999999997431 2358999999999999999999999   889999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ...........           ...++..|+|||.+....++.++|||||||++|||+| |+.|+.......+.......
T Consensus       329 ~~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~  397 (452)
T 1fmk_A          329 LIEDNEYTARQ-----------GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG  397 (452)
T ss_dssp             -------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT
T ss_pred             ecCCCceeccc-----------CCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence            65432211100           1123446889999988899999999999999999999 89998754433222221111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      .        .......++    ..+.+++.+||+.||++|||+.++++.|+.+.
T Consensus       398 ~--------~~~~~~~~~----~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~  439 (452)
T 1fmk_A          398 Y--------RMPCPPECP----ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  439 (452)
T ss_dssp             C--------CCCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred             C--------CCCCCCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence            0        011112333    34889999999999999999999999998664

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=4.5e-40  Score=347.44  Aligned_cols=261  Identities=19%  Similarity=0.256  Sum_probs=196.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+..+|+.||||+++...  ....+.+.+|++++++++|||||++++++...        
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--------   91 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSE--------   91 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCS--------
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccC--------
Confidence            46789999999999999999998889999999997432  22346788999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++ +|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        92 ~~~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  165 (311)
T 3niz_A           92 RCLTLVFEFMEK-DLKKVLDEN--KTGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGL  165 (311)
T ss_dssp             SCEEEEEECCSE-EHHHHHHTC--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CEEEEEEcCCCC-CHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcC
Confidence            478999999985 888877654  3458999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~  674 (747)
                      ++.........            ....++..|+|||++.. ..++.++|||||||++|||++|+.||.... ...+..+.
T Consensus       166 a~~~~~~~~~~------------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~  233 (311)
T 3niz_A          166 ARAFGIPVRSY------------THEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIF  233 (311)
T ss_dssp             CEETTSCCC---------------CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHH
T ss_pred             ceecCCCcccc------------cCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Confidence            97653221110            11234667899998765 568999999999999999999999886433 23333332


Q ss_pred             hccCcCCccc----------------cccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRR----------------IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~----------------~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ..........                ..+........+....++.+++.+||+.||++|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          234 SILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             HHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            2111110000                00000000011122345889999999999999999999986

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.9e-40  Score=356.13  Aligned_cols=253  Identities=20%  Similarity=0.257  Sum_probs=201.3

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..++|++.+.||+|+||.||+|+. .+|+.||||++....  ....+.+.+|++++++++|||||++++++.+.      
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~------  100 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE------  100 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS------
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC------
Confidence            457799999999999999999985 568999999997532  33456788999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC---CcEEE
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH---RIAKL  591 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl  591 (747)
                        ...++||||+++|+|.+++..   ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.+   +.+||
T Consensus       101 --~~~~lv~e~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl  172 (362)
T 2bdw_A          101 --SFHYLVFDLVTGGELFEDIVA---REFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKL  172 (362)
T ss_dssp             --SEEEEEECCCCSCBHHHHHTT---CSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEE
T ss_pred             --CEEEEEEecCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEE
Confidence              478999999999999998875   3458999999999999999999999   799999999999999865   45999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      +|||+++........             ...++++.|+|||++....++.++|||||||++|||++|..||.......+.
T Consensus       173 ~DfG~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~  239 (362)
T 2bdw_A          173 ADFGLAIEVNDSEAW-------------HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLY  239 (362)
T ss_dssp             CCCTTCBCCTTCCSC-------------CCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             eecCcceEecCCccc-------------ccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence            999999765432111             1135677899999998888999999999999999999999998765433322


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........    . .......++    ..+.+++.+||+.||++|||+.|+++.
T Consensus       240 ~~i~~~~~~----~-~~~~~~~~~----~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          240 AQIKAGAYD----Y-PSPEWDTVT----PEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             HHHHHTCCC----C-CTTGGGGSC----HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             HHHHhCCCC----C-CcccccCCC----HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            222111111    0 011111223    348899999999999999999999864

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=2.7e-40  Score=350.89  Aligned_cols=252  Identities=19%  Similarity=0.293  Sum_probs=196.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch-hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK-YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|+.+++.++|||||++++++...        
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~--------   77 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG--------   77 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECS--------
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecC--------
Confidence            46799999999999999999985 4799999999974432 2346688999999999999999999999763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++|+|.+++..   ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~  151 (323)
T 3tki_A           78 NIQYLFLEYCSGGELFDRIEP---DIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGL  151 (323)
T ss_dssp             SEEEEEEECCTTEEGGGGSBT---TTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             CeEEEEEEcCCCCcHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeec
Confidence            478999999999999999975   3459999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChhhhH--HHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEAFLL--NEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~--~~~  673 (747)
                      ++..........          ....+++..|+|||++....+ +.++|||||||++|||++|+.||........  ..+
T Consensus       152 a~~~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~  221 (323)
T 3tki_A          152 ATVFRYNNRERL----------LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDW  221 (323)
T ss_dssp             CEECEETTEECC----------BCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHH
T ss_pred             cceeccCCcccc----------cCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence            976543221110          011346678899999877665 7789999999999999999999975433211  111


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....      ....+      .......+.+++.+||+.||++|||+.|+++.
T Consensus       222 ~~~~------~~~~~------~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          222 KEKK------TYLNP------WKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             HTTC------TTSTT------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             hccc------ccCCc------cccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            1110      00000      11223347889999999999999999999864

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=3.1e-40  Score=350.77  Aligned_cols=270  Identities=17%  Similarity=0.250  Sum_probs=194.8

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeCC-C---cEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLEN-G---TYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~~-g---~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      ..++|++.+.||+|+||.||+|+... +   ..||||+++..  .....+.+.+|++++++++||||+++++++......
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence            34679999999999999999998543 3   27999998753  334567899999999999999999999998764310


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENC---PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                        ......++||||+++|+|.+++....   ....+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.
T Consensus       101 --~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~Dikp~NIli~~~~~  175 (323)
T 3qup_A          101 --GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS---RNFIHRDLAARNCMLAEDMT  175 (323)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSC
T ss_pred             --cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc---CCcccCCCCcceEEEcCCCC
Confidence              11123499999999999999986431   12358999999999999999999999   88999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEA  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~  667 (747)
                      +||+|||+++...........          ....++..|++||.+....++.++|||||||++|||++ |+.||.....
T Consensus       176 ~kl~Dfg~a~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~  245 (323)
T 3qup_A          176 VCVADFGLSRKIYSGDYYRQG----------CASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN  245 (323)
T ss_dssp             EEECCCCC---------------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             EEEeecccccccccccccccc----------ccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh
Confidence            999999999765433221110          01123446889999888889999999999999999999 8999876544


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ............        +.....++    ..+.+++.+||+.||.+|||+.|+++.|+.+....
T Consensus       246 ~~~~~~~~~~~~--------~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          246 AEIYNYLIGGNR--------LKQPPECM----EEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             GGHHHHHHTTCC--------CCCCTTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhcCCC--------CCCCCccC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            333222211110        11112233    34889999999999999999999999999886643

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=4.8e-40  Score=347.71  Aligned_cols=244  Identities=22%  Similarity=0.298  Sum_probs=200.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++...   ....+.+.+|+.+++.++|||||++++++.+.      
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~------   78 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA------   78 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS------
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeC------
Confidence            36789999999999999999995 579999999997432   23456788999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        79 --~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Df  150 (318)
T 1fot_A           79 --QQIFMIMDYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDF  150 (318)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             --CEEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeec
Confidence              4799999999999999999763   458999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~  673 (747)
                      |+++......               ...++++.|+|||++....++.++|||||||++|||++|+.||....... ...+
T Consensus       151 g~a~~~~~~~---------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i  215 (318)
T 1fot_A          151 GFAKYVPDVT---------------YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKI  215 (318)
T ss_dssp             SSCEECSSCB---------------CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH
T ss_pred             CcceecCCcc---------------ccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9997643211               01356778999999988899999999999999999999999987544332 2222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      ... .         ...+..++    ..+.+++.+|++.||++||     ++.||++
T Consensus       216 ~~~-~---------~~~p~~~~----~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          216 LNA-E---------LRFPPFFN----EDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             HHC-C---------CCCCTTSC----HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             HhC-C---------CCCCCCCC----HHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence            211 0         11112233    3488999999999999999     8899875

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-40  Score=357.63  Aligned_cols=262  Identities=22%  Similarity=0.328  Sum_probs=194.3

Q ss_pred             CCCccccccCCCCeeEEEEEeC--C--CcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLE--N--GTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~--~--g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .|...+.||+|+||.||+|+..  +  +..||||.++.. .....+.+.+|+.++++++|||||+++++|...       
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-------  162 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRS-------  162 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCC-------
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcC-------
Confidence            3566789999999999999852  2  246899998743 334567899999999999999999999998653       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+++|+|.++++..  ...+++..+..++.||++||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       163 ~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG  237 (373)
T 3c1x_A          163 EGSPLVVLPYMKHGDLRNFIRNE--THNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFG  237 (373)
T ss_dssp             SSCCEEEEECCTTCBHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             CCCeEEEEECCCCCCHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeecc
Confidence            23678999999999999999754  3458899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~  674 (747)
                      +++...........        ......++..|++||.+....++.++|||||||++|||+| |.+|+............
T Consensus       238 ~a~~~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~  309 (373)
T 3c1x_A          238 LARDMYDKEFDSVH--------NKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYL  309 (373)
T ss_dssp             ----------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHH
T ss_pred             cccccccccccccc--------ccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHH
Confidence            99765432211110        0011233456899999988899999999999999999999 57777654333222221


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ....     ....   ...++.    .+.+++.+||+.||++|||+.|+++.|+.+....
T Consensus       310 ~~~~-----~~~~---p~~~~~----~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~  357 (373)
T 3c1x_A          310 LQGR-----RLLQ---PEYCPD----PLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF  357 (373)
T ss_dssp             HTTC-----CCCC---CTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             HcCC-----CCCC---CCCCCH----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            1111     1111   122333    4889999999999999999999999999886543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=5.8e-40  Score=355.08  Aligned_cols=246  Identities=19%  Similarity=0.235  Sum_probs=193.5

Q ss_pred             cccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          445 LSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      .+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||+++++|...        ...++||
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~--------~~~~lv~  165 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESK--------NDIVLVM  165 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS--------SEEEEEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC--------CEEEEEE
Confidence            56799999999999985 57999999999876656667899999999999999999999999763        4789999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee--cCCCcEEEeccccccccc
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL--DEHRIAKLSDYGISIIME  601 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl--d~~~~~kl~DFGla~~~~  601 (747)
                      ||+++|+|.+++...  ...+++..+..++.||++||+|||+   .+|+||||||+|||+  +.++.+||+|||+++...
T Consensus       166 E~~~~~~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~  240 (373)
T 2x4f_A          166 EYVDGGELFDRIIDE--SYNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYK  240 (373)
T ss_dssp             ECCTTCEEHHHHHHT--GGGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECC
T ss_pred             eCCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceecC
Confidence            999999999988653  3458999999999999999999999   889999999999999  677899999999997654


Q ss_pred             ccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhccCcC
Q 044236          602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASFGSQD  680 (747)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~~~~~  680 (747)
                      ......             ...++..|+|||++....++.++|||||||++|||++|+.||..... ..+..+...... 
T Consensus       241 ~~~~~~-------------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~-  306 (373)
T 2x4f_A          241 PREKLK-------------VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWD-  306 (373)
T ss_dssp             TTCBCC-------------CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCC-
T ss_pred             Cccccc-------------cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCC-
Confidence            322110             12456789999999888899999999999999999999999875443 233333221110 


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       681 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                           ..+.....++    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       307 -----~~~~~~~~~~----~~~~~li~~~L~~dp~~Rps~~e~l~h  343 (373)
T 2x4f_A          307 -----LEDEEFQDIS----EEAKEFISKLLIKEKSWRISASEALKH  343 (373)
T ss_dssp             -----SCSGGGTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             -----CChhhhccCC----HHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                 1111112233    348899999999999999999999873

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-40  Score=353.33  Aligned_cols=277  Identities=17%  Similarity=0.185  Sum_probs=193.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ..+|++.+.||+|+||.||+|+. .+++.||||++........+.+.+|+.++++++ ||||+++++++...........
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            35788999999999999999995 579999999997666666678899999999996 9999999999864332222335


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceeecCCCcEEEecc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG--SFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      ...++||||+. |+|.+++........+++..+..++.|++.||+|||+   .+  |+||||||+|||++.++.+||+||
T Consensus       107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~~~ivH~Dikp~NIl~~~~~~~kl~Df  182 (337)
T 3ll6_A          107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR---QKPPIIHRDLKVENLLLSNQGTIKLCDF  182 (337)
T ss_dssp             EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred             ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCEEEccCCcccEEECCCCCEEEecC
Confidence            57899999996 7999988653334569999999999999999999998   56  999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeee---eccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVV---DIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      |+++.........................++..|++||++   ....++.++|||||||++|||+||+.||.........
T Consensus       183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~  262 (337)
T 3ll6_A          183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIV  262 (337)
T ss_dssp             TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred             ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhh
Confidence            9997765432211100000000011123466778999988   4667889999999999999999999998643321110


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .  .         ..........+..    +.+++.+||+.||.+|||+.|+++.|+.+....
T Consensus       263 ~--~---------~~~~~~~~~~~~~----~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~  310 (337)
T 3ll6_A          263 N--G---------KYSIPPHDTQYTV----FHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR  310 (337)
T ss_dssp             --------------CCCCTTCCSSGG----GHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             c--C---------cccCCcccccchH----HHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence            0  0         0000011122222    788999999999999999999999999887644

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=3e-40  Score=357.09  Aligned_cols=250  Identities=20%  Similarity=0.282  Sum_probs=197.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...   .....+.+.+|+++|++++|||||+++++|...      
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~------   87 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDE------   87 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS------
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC------
Confidence            36789999999999999999995 56899999999743   234567888999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++..   ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        88 --~~~~lv~e~~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DF  159 (384)
T 4fr4_A           88 --EDMFMVVDLLLGGDLRYHLQQ---NVHFKEETVKLFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDF  159 (384)
T ss_dssp             --SEEEEEECCCTTEEHHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCC
T ss_pred             --CEEEEEEecCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEECCCCCEEEecc
Confidence              478999999999999999975   3459999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeec---cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI---QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      |+++........             ...+++..|+|||++..   ..++.++|||||||++|||++|+.||.........
T Consensus       160 G~a~~~~~~~~~-------------~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~  226 (384)
T 4fr4_A          160 NIAAMLPRETQI-------------TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSK  226 (384)
T ss_dssp             TTCEECCTTCCB-------------CCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHH
T ss_pred             ceeeeccCCCce-------------eccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHH
Confidence            999765432111             11356778999998864   35889999999999999999999998643322222


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-HHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-FEDVLW  725 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~evl~  725 (747)
                      .+.......      ....+..+    ...+.+++.+||+.||.+||+ +.+|..
T Consensus       227 ~~~~~~~~~------~~~~p~~~----s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          227 EIVHTFETT------VVTYPSAW----SQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             HHHHHHHHC------CCCCCTTS----CHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             HHHHHHhhc------ccCCCCcC----CHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            211110000      01111223    344889999999999999998 666653

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=8.7e-40  Score=337.88  Aligned_cols=253  Identities=19%  Similarity=0.328  Sum_probs=200.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+.. ++.||||+++...  ....+.+.+|+.++++++||||++++++|...+      .
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~------~   81 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPP------A   81 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTT------S
T ss_pred             HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCC------C
Confidence            357889999999999999999985 8899999997542  344567999999999999999999999987642      3


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceeecCCCcEEEecc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG--SFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      ...++||||+++|+|.+++... ....+++..+..++.|++.||+|||+   .+  |+||||||+||+++.++.+||+||
T Consensus        82 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~l~~~  157 (271)
T 3kmu_A           82 PHPTLITHWMPYGSLYNVLHEG-TNFVVDQSQAVKFALDMARGMAFLHT---LEPLIPRHALNSRSVMIDEDMTARISMA  157 (271)
T ss_dssp             SSCEEEEECCTTCBHHHHHHSC-SSCCCCHHHHHHHHHHHHHHHHHHTT---SSSCCTTCCCSGGGEEECTTSCEEEEGG
T ss_pred             CCeEeeecccCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhc---CCCceecCCCccceEEEcCCcceeEEec
Confidence            4789999999999999999764 23368999999999999999999998   56  999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCc---CCceeehhHHHHHHhhCCCCCCCChhhhH-
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL---EDDVYNFGFILLESLVGPIVTGKGEAFLL-  670 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~---k~DVwSfGvvl~Elltg~~p~~~~~~~~~-  670 (747)
                      |++.......                 ..++..|+|||.+....++.   ++|||||||++|||++|+.||........ 
T Consensus       158 ~~~~~~~~~~-----------------~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~  220 (271)
T 3kmu_A          158 DVKFSFQSPG-----------------RMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIG  220 (271)
T ss_dssp             GSCCTTSCTT-----------------CBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHH
T ss_pred             cceeeecccC-----------------ccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHH
Confidence            9874322110                 12356788999887654443   79999999999999999999975443322 


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      .......        ..+.....++.    .+.+++.+||+.||++|||+.|+++.|+.+.
T Consensus       221 ~~~~~~~--------~~~~~~~~~~~----~~~~li~~~l~~~p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          221 MKVALEG--------LRPTIPPGISP----HVSKLMKICMNEDPAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             HHHHHSC--------CCCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             HHHHhcC--------CCCCCCCCCCH----HHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence            1121111        11122223333    4889999999999999999999999998763

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.7e-40  Score=349.82  Aligned_cols=259  Identities=20%  Similarity=0.311  Sum_probs=200.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcE----EEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTY----VAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      .++|++.+.||+|+||.||+|+. .+++.    ||+|.+... .....+.+.+|+.++++++||||++++++|...    
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~----   89 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS----   89 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS----
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC----
Confidence            36788999999999999999984 44554    577776532 334567899999999999999999999999762    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                           ..++||||+++|+|.+++...  ...+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+
T Consensus        90 -----~~~~v~~~~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~  159 (327)
T 3lzb_A           90 -----TVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKIT  159 (327)
T ss_dssp             -----SEEEEECCCSSCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEEC
T ss_pred             -----CceEEEEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEc
Confidence                 478999999999999999764  3468999999999999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~  671 (747)
                      |||+++...........          ....++..|++||.+....++.++|||||||++|||++ |+.||.......+.
T Consensus       160 DfG~a~~~~~~~~~~~~----------~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~  229 (327)
T 3lzb_A          160 DFGLAKLLGAEEKEYHA----------EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEIS  229 (327)
T ss_dssp             CTTC--------------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHH
T ss_pred             cCcceeEccCccccccc----------cCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence            99999765433221110          01123456889999988899999999999999999999 99999866554444


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      ........        ......++.    .+.+++.+||+.||.+|||+.|+++.|+.+...
T Consensus       230 ~~~~~~~~--------~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          230 SILEKGER--------LPQPPICTI----DVYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             HHHHTTCC--------CCCCTTBCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             HHHHcCCC--------CCCCccCCH----HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence            43332111        111122333    488999999999999999999999999988653

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=5.5e-40  Score=339.62  Aligned_cols=252  Identities=22%  Similarity=0.390  Sum_probs=192.5

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+.. |+.||||+++...    ....+.+.+|+++++.++||||++++++|...       
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-------   78 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKE-------   78 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC-------
T ss_pred             hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC-------
Confidence            57888999999999999999975 8899999987432    23356789999999999999999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC--------CC
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE--------HR  587 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--------~~  587 (747)
                       ...++||||+++|+|.+++..    ..+++..+..++.|++.||+|||+....+|+||||||+||+++.        ++
T Consensus        79 -~~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~  153 (271)
T 3dtc_A           79 -PNLCLVMEFARGGPLNRVLSG----KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNK  153 (271)
T ss_dssp             ---CEEEEECCTTEEHHHHHTS----SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSC
T ss_pred             -CceEEEEEcCCCCCHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCc
Confidence             368999999999999999863    35899999999999999999999944334999999999999986        77


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      .+||+|||+++........              ...++..|++||.+....++.++|||||||++|||++|+.||.....
T Consensus       154 ~~kl~Dfg~~~~~~~~~~~--------------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  219 (271)
T 3dtc_A          154 ILKITDFGLAREWHRTTKM--------------SAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG  219 (271)
T ss_dssp             CEEECCCCC---------------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH
T ss_pred             ceEEccCCccccccccccc--------------CCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            8999999999755432211              12345678899998888899999999999999999999999976543


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      ...........       ........++    ..+.+++.+||+.||.+|||+.|++++|+.
T Consensus       220 ~~~~~~~~~~~-------~~~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~~L~~  270 (271)
T 3dtc_A          220 LAVAYGVAMNK-------LALPIPSTCP----EPFAKLMEDCWNPDPHSRPSFTNILDQLTT  270 (271)
T ss_dssp             HHHHHHHHTSC-------CCCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred             HHHHHhhhcCC-------CCCCCCcccC----HHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence            33222211110       0111122233    348899999999999999999999999974

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.6e-40  Score=365.30  Aligned_cols=263  Identities=18%  Similarity=0.236  Sum_probs=205.3

Q ss_pred             CHHHHHHHhhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeee
Q 044236          431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCI  506 (747)
Q Consensus       431 ~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~  506 (747)
                      .+.++...+++|++.++||+|+||+||+|+.. +++.||||+++...   ......+.+|+.++..++|||||+++++|.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            34556667789999999999999999999964 58999999997422   222344889999999999999999999997


Q ss_pred             ccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC
Q 044236          507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH  586 (747)
Q Consensus       507 ~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~  586 (747)
                      +.        ...++|||||++|+|.+++...  ...+++..+..++.|++.||+|||+   .+||||||||+|||++.+
T Consensus       145 ~~--------~~~~lV~Ey~~gg~L~~~l~~~--~~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~  211 (437)
T 4aw2_A          145 DD--------NNLYLVMDYYVGGDLLTLLSKF--EDRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMN  211 (437)
T ss_dssp             CS--------SEEEEEECCCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTT
T ss_pred             eC--------CEEEEEEecCCCCcHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCC
Confidence            73        4799999999999999999763  3469999999999999999999999   899999999999999999


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCC
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                      +.+||+|||+|+.........           ....++++.|+|||++.     ...++.++|||||||++|||++|+.|
T Consensus       212 g~vkL~DFGla~~~~~~~~~~-----------~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~P  280 (437)
T 4aw2_A          212 GHIRLADFGSCLKLMEDGTVQ-----------SSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETP  280 (437)
T ss_dssp             SCEEECCCTTCEECCTTSCEE-----------CCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCT
T ss_pred             CCEEEcchhhhhhcccCCCcc-----------cccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCC
Confidence            999999999997654322111           11135678899999886     45689999999999999999999999


Q ss_pred             CCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCC--CCCHHHHHHH
Q 044236          662 TGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS--RPSFEDVLWN  726 (747)
Q Consensus       662 ~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~  726 (747)
                      |...... ....+.....     ...-|......++    .+.+++.+|+..+|++  ||++.|++++
T Consensus       281 f~~~~~~~~~~~i~~~~~-----~~~~p~~~~~~s~----~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          281 FYAESLVETYGKIMNHKE-----RFQFPTQVTDVSE----NAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             TCCSSHHHHHHHHHTHHH-----HCCCCSSCCCSCH----HHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             CCCCChhHHHHhhhhccc-----cccCCcccccCCH----HHHHHHHHHhcccccccCCCCHHHHhCC
Confidence            8755432 2222221100     0111111122333    4788999999988888  9999999863

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=4.9e-40  Score=343.32  Aligned_cols=260  Identities=17%  Similarity=0.217  Sum_probs=196.1

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||.||+|+..+|+.||||++....  ....+.+.+|++++++++||||+++++++...        .
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~   73 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTK--------K   73 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECS--------S
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccC--------C
Confidence            4688899999999999999998889999999997433  22346788999999999999999999999763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++ +|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  147 (288)
T 1ob3_A           74 RLVLVFEHLDQ-DLKKLLDVC--EGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLA  147 (288)
T ss_dssp             CEEEEEECCSE-EHHHHHHTS--TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHH
T ss_pred             eEEEEEEecCC-CHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccc
Confidence            78999999975 898888753  3468999999999999999999999   89999999999999999999999999998


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      +........            .....++..|+|||++.. ..++.++|||||||++|||++|+.||..... ..+..+..
T Consensus       148 ~~~~~~~~~------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~  215 (288)
T 1ob3_A          148 RAFGIPVRK------------YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR  215 (288)
T ss_dssp             HHHCC---------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred             cccCccccc------------cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            754321110            011234667899998865 4589999999999999999999999875432 22222222


Q ss_pred             ccCcCC------cc--ccccccc-------cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDG------RR--RIVDPVV-------LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~------~~--~~~d~~~-------~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......      ..  ...++..       ...........+.+++.+||+.||++|||+.|+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          216 ILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             HHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            111100      00  0001110       01111223445889999999999999999999985

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=2.4e-40  Score=345.69  Aligned_cols=251  Identities=24%  Similarity=0.303  Sum_probs=199.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CC-------cEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NG-------TYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g-------~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      .++|.+.+.||+|+||.||+|+.. ++       ..||+|++........+.+.+|++++++++||||+++++++...  
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--   84 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCG--   84 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT--
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC--
Confidence            357888999999999999999843 34       57999999876666778899999999999999999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc--
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI--  588 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--  588 (747)
                            +..++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.  
T Consensus        85 ------~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~  153 (289)
T 4fvq_A           85 ------DENILVQEFVKFGSLDTYLKKN--KNCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRK  153 (289)
T ss_dssp             ------TCCEEEEECCTTCBHHHHHHHT--GGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGG
T ss_pred             ------CCCEEEEECCCCCCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCccc
Confidence                  3679999999999999999764  3348999999999999999999999   88999999999999998887  


Q ss_pred             ------EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhC-CC
Q 044236          589 ------AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVG-PI  660 (747)
Q Consensus       589 ------~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg-~~  660 (747)
                            +||+|||+++.......                ..++..|+|||.+.. ..++.++|||||||++|||++| .+
T Consensus       154 ~~~~~~~kl~Dfg~~~~~~~~~~----------------~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~  217 (289)
T 4fvq_A          154 TGNPPFIKLSDPGISITVLPKDI----------------LQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDK  217 (289)
T ss_dssp             GTBCCEEEECCCCSCTTTSCHHH----------------HHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ccccceeeeccCcccccccCccc----------------cCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCC
Confidence                  99999999865433221                123456889998876 6789999999999999999996 55


Q ss_pred             CCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      |+...............          +......+.    .+.+++.+||+.||.+|||+.|+++.|+.+..
T Consensus       218 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~  275 (289)
T 4fvq_A          218 PLSALDSQRKLQFYEDR----------HQLPAPKAA----ELANLINNCMDYEPDHRPSFRAIIRDLNSLFT  275 (289)
T ss_dssp             TTTTSCHHHHHHHHHTT----------CCCCCCSSC----TTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred             CccccchHHHHHHhhcc----------CCCCCCCCH----HHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            65544333222221110          011111222    27889999999999999999999999987644

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.5e-40  Score=358.84  Aligned_cols=271  Identities=17%  Similarity=0.244  Sum_probs=209.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|.+.+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++...+      ..
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~------~~   82 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT------TR   82 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT------TC
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCC------CC
Confidence            5688899999999999999995 459999999997543 344577889999999999999999999987633      34


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee----cCCCcEEEec
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL----DEHRIAKLSD  593 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl~D  593 (747)
                      ..++||||+++|+|.+++........+++..++.++.|++.||+|||+   .+|+||||||+|||+    +.++.+||+|
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (396)
T 4eut_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (396)
T ss_dssp             CEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEEECC
T ss_pred             eeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEEEec
Confidence            689999999999999999865434459999999999999999999999   899999999999999    7888899999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec--------cCCCcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--------QRTKLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------~~~s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      ||+++.........             ...++..|++||++..        ..++.++|||||||++|||+||+.||...
T Consensus       160 FG~a~~~~~~~~~~-------------~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~  226 (396)
T 4eut_A          160 FGAARELEDDEQFV-------------SLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF  226 (396)
T ss_dssp             GGGCEECCCGGGSS-------------CSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECT
T ss_pred             CCCceEccCCCccc-------------cccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            99997664432211             1235667888988754        56788999999999999999999998532


Q ss_pred             h-----hhhHHHHHhccCcCCcccc---------c--cccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          666 E-----AFLLNEMASFGSQDGRRRI---------V--DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       666 ~-----~~~~~~~~~~~~~~~~~~~---------~--d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      .     ...+..+...........+         .  +.......+......+.+++.+||+.||++||++.|+++.++.
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~  306 (396)
T 4eut_A          227 EGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD  306 (396)
T ss_dssp             TCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred             CcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHH
Confidence            1     1222222221111000000         0  0011123456777889999999999999999999999999987


Q ss_pred             HHH
Q 044236          730 AAQ  732 (747)
Q Consensus       730 ~~~  732 (747)
                      +..
T Consensus       307 il~  309 (396)
T 4eut_A          307 ILH  309 (396)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            654

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.8e-40  Score=360.08  Aligned_cols=248  Identities=20%  Similarity=0.251  Sum_probs=194.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||+||+|+. .+++.||||+++...   ....+.+.+|..++.++ +|||||++++++...     
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~-----  125 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE-----  125 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECS-----
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEEC-----
Confidence            46799999999999999999995 568999999997542   22334578899999887 899999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|..++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus       126 ---~~~~lV~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~D  196 (396)
T 4dc2_A          126 ---SRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTD  196 (396)
T ss_dssp             ---SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             ---CEEEEEEEcCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEee
Confidence               4899999999999999998763   458999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh------
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA------  667 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~------  667 (747)
                      ||+++........            ....++++.|+|||++....++.++|||||||++|||++|+.||.....      
T Consensus       197 FGla~~~~~~~~~------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~  264 (396)
T 4dc2_A          197 YGMCKEGLRPGDT------------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ  264 (396)
T ss_dssp             CTTCBCCCCTTCC------------BCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------
T ss_pred             cceeeecccCCCc------------cccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccch
Confidence            9999753211110            1124678889999999999999999999999999999999999953211      


Q ss_pred             ---hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH------HHHHH
Q 044236          668 ---FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF------EDVLW  725 (747)
Q Consensus       668 ---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~------~evl~  725 (747)
                         ..+.......         ...++..+    ...+.+++.+||+.||.+||++      .||++
T Consensus       265 ~~~~~~~~~i~~~---------~~~~p~~~----s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~  318 (396)
T 4dc2_A          265 NTEDYLFQVILEK---------QIRIPRSL----SVKAASVLKSFLNKDPKERLGCHPQTGFADIQG  318 (396)
T ss_dssp             CCHHHHHHHHHHC---------CCCCCTTS----CHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHH
T ss_pred             hhHHHHHHHHhcc---------ccCCCCcC----CHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhc
Confidence               1111111100         01111223    3348899999999999999995      56654

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=375.01  Aligned_cols=253  Identities=19%  Similarity=0.265  Sum_probs=199.1

Q ss_pred             cccCCCCeeEEEEEeC---CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEE
Q 044236          447 FMGEGSRGKLYKGRLE---NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      .||+|+||.||+|.+.   ++..||||+++... ....+.+.+|+++|++++|||||+++++|..         ...++|
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~---------~~~~lv  413 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA---------EALMLV  413 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES---------SSEEEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc---------CCeEEE
Confidence            6999999999999853   46789999997543 3456889999999999999999999999864         258999


Q ss_pred             EeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccc
Q 044236          523 YEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE  602 (747)
Q Consensus       523 ~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  602 (747)
                      ||||++|+|.+++...  ...+++..+..++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++....
T Consensus       414 ~E~~~~g~L~~~l~~~--~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~  488 (613)
T 2ozo_A          414 MEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKALGA  488 (613)
T ss_dssp             EECCTTCBHHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-
T ss_pred             EEeCCCCcHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCcccccC
Confidence            9999999999999754  4569999999999999999999999   8899999999999999999999999999987643


Q ss_pred             cchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCcCC
Q 044236          603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQDG  681 (747)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~~~  681 (747)
                      ........         ....++..|+|||++....++.++|||||||++|||+| |+.||.......+.........  
T Consensus       489 ~~~~~~~~---------~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~--  557 (613)
T 2ozo_A          489 DDSYYTAR---------SAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKR--  557 (613)
T ss_dssp             ----------------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCC--
T ss_pred             CCceeeec---------cCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC--
Confidence            22111100         00123456899999988999999999999999999998 9999976544333222221110  


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       682 ~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                            ......++    ..+.+++.+||+.||++||+|.+|++.|+.+....
T Consensus       558 ------~~~p~~~~----~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~  600 (613)
T 2ozo_A          558 ------MECPPECP----PELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  600 (613)
T ss_dssp             ------CCCCTTCC----HHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             ------CCCCCcCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence                  11112333    34889999999999999999999999999876543

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.7e-40  Score=349.29  Aligned_cols=272  Identities=22%  Similarity=0.329  Sum_probs=200.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      +.|++.+.||+|+||.||+|++     .+++.||||+++... ....+.+.+|++++++++||||+++++++...+    
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----   96 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDG----   96 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCC----
Confidence            4578889999999999999983     468999999997432 345578899999999999999999999998643    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        97 --~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~D  169 (302)
T 4e5w_A           97 --GNGIKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGD  169 (302)
T ss_dssp             ---CCEEEEEECCTTCBHHHHHHHH--TTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECC
T ss_pred             --CceEEEEEEeCCCCcHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECc
Confidence              34689999999999999999654  3458999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++.............         ...++..|++||.+....++.++|||||||++|||+||..|+...........
T Consensus       170 fg~~~~~~~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~  240 (302)
T 4e5w_A          170 FGLTKAIETDKEYYTVKD---------DRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMI  240 (302)
T ss_dssp             CTTCEECCTTCCEEECCC---------CTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHH
T ss_pred             ccccccccCCCcceeccC---------CCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhcc
Confidence            999976654322111100         01234458889988888889999999999999999999887643221111100


Q ss_pred             HhccCcCC---ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          674 ASFGSQDG---RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       674 ~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ........   .............+...+..+.+++.+||+.||.+|||+.|+++.|+.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          241 GPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             CSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            00000000   00000000011112233345889999999999999999999999998763

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=2.7e-40  Score=353.24  Aligned_cols=249  Identities=21%  Similarity=0.281  Sum_probs=199.4

Q ss_pred             HHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCC
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~  511 (747)
                      ...++|.+.+.||+|+||.||+|+. .+|+.||||+++...   ....+.+..|..++..+ +||||+++++++...   
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~---   90 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTK---   90 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECS---
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeC---
Confidence            3467899999999999999999995 568999999997532   33456788899999876 999999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                           ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||
T Consensus        91 -----~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL  159 (345)
T 1xjd_A           91 -----ENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKI  159 (345)
T ss_dssp             -----SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEE
T ss_pred             -----CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEE
Confidence                 4799999999999999999753   358999999999999999999999   89999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      +|||+++........            ....++++.|+|||++....++.++|||||||++|||++|+.||.......+.
T Consensus       160 ~DFG~a~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~  227 (345)
T 1xjd_A          160 ADFGMCKENMLGDAK------------TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELF  227 (345)
T ss_dssp             CCCTTCBCCCCTTCC------------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             eEChhhhhcccCCCc------------ccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence            999999753221110            11245678899999998888999999999999999999999998765443322


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH-HHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE-DVL  724 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~-evl  724 (747)
                      ......         .+.....++    ..+.+++.+||+.||++||++. ||.
T Consensus       228 ~~i~~~---------~~~~p~~~s----~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          228 HSIRMD---------NPFYPRWLE----KEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             HHHHHC---------CCCCCTTSC----HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             HHHHhC---------CCCCCcccC----HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence            222111         111112233    3488999999999999999997 665

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=7e-40  Score=340.81  Aligned_cols=260  Identities=22%  Similarity=0.316  Sum_probs=202.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCC----CcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLEN----GTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|.+.+.||+|+||.||+|+...    +..||||.+... .....+.+.+|+.++++++||||+++++++...     
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----   85 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-----   85 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-----
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-----
Confidence            4678899999999999999998532    346999998754 334557889999999999999999999997642     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                          ..++||||+++|+|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        86 ----~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~D  156 (281)
T 3cc6_A           86 ----PTWIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGD  156 (281)
T ss_dssp             ----SCEEEEECCTTCBHHHHHHHH--TTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECC
T ss_pred             ----CCEEEEecCCCCCHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCc
Confidence                468999999999999999764  3458999999999999999999999   8899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++...........           ...++..|++||.+....++.++|||||||++|||+| |+.||..........
T Consensus       157 fg~~~~~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~  225 (281)
T 3cc6_A          157 FGLSRYIEDEDYYKAS-----------VTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIG  225 (281)
T ss_dssp             CCGGGCC--------------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHH
T ss_pred             cCCCcccccccccccc-----------cCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHH
Confidence            9999765432211110           1123446889999888889999999999999999998 999986544333222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQA  735 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  735 (747)
                      .......        ......++    ..+.+++.+||+.||++|||+.|+++.|+.+.+...
T Consensus       226 ~~~~~~~--------~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~  276 (281)
T 3cc6_A          226 VLEKGDR--------LPKPDLCP----PVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEK  276 (281)
T ss_dssp             HHHHTCC--------CCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCC--------CCCCCCCC----HHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhhh
Confidence            2221110        11112233    348899999999999999999999999998866543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.6e-40  Score=351.52  Aligned_cols=262  Identities=20%  Similarity=0.260  Sum_probs=202.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|.+.+.||+|+||.||+|+.      .+++.||||+++... ....+.+.+|+.+++++ +||||+++++++...  
T Consensus        44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~--  121 (344)
T 1rjb_A           44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS--  121 (344)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS--
T ss_pred             HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC--
Confidence            46788999999999999999985      246789999997432 23446789999999999 899999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCC--------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPE--------------------NVLKWSDRLAILIGVAKAVHFLHSSVISG  570 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  570 (747)
                            ...++||||+++|+|.+++......                    ..+++..+..++.|++.||+|||+   .+
T Consensus       122 ------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~  192 (344)
T 1rjb_A          122 ------GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KS  192 (344)
T ss_dssp             ------SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             ------CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence                  3689999999999999999754221                    348999999999999999999999   89


Q ss_pred             cccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhH
Q 044236          571 SFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF  650 (747)
Q Consensus       571 ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGv  650 (747)
                      |+||||||+|||++.++.+||+|||+++..........          .....++..|+|||.+....++.++|||||||
T Consensus       193 ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~  262 (344)
T 1rjb_A          193 CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVV----------RGNARLPVKWMAPESLFEGIYTIKSDVWSYGI  262 (344)
T ss_dssp             EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEE----------ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred             cccCCCChhhEEEcCCCcEEeCCCccCcccccCcccee----------ccCccCccCccCHHHhccCCCChhHhHHHHHH
Confidence            99999999999999999999999999976543221111          01123456789999998889999999999999


Q ss_pred             HHHHHhh-CCCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          651 ILLESLV-GPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       651 vl~Ellt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ++|||+| |..||...... ..........        .+.....++    ..+.+++.+||+.||.+|||+.|+++.|+
T Consensus       263 il~el~t~g~~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~l~  330 (344)
T 1rjb_A          263 LLWEIFSLGVNPYPGIPVDANFYKLIQNGF--------KMDQPFYAT----EEIYIIMQSCWAFDSRKRPSFPNLTSFLG  330 (344)
T ss_dssp             HHHHHTTTSCCSSTTCCCSHHHHHHHHTTC--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHcCCCCCcccCCcHHHHHHHHhcCC--------CCCCCCCCC----HHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence            9999998 99898754322 2222221110        111112223    34889999999999999999999999998


Q ss_pred             HHHHH
Q 044236          729 YAAQV  733 (747)
Q Consensus       729 ~~~~~  733 (747)
                      .....
T Consensus       331 ~~~~~  335 (344)
T 1rjb_A          331 CQLAD  335 (344)
T ss_dssp             HHC--
T ss_pred             HHHHH
Confidence            77553

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=7.6e-40  Score=341.75  Aligned_cols=260  Identities=19%  Similarity=0.291  Sum_probs=209.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+.+|++++++++||||+++++++...        .
T Consensus        12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~   82 (288)
T 3kfa_A           12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--------P   82 (288)
T ss_dssp             GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--------S
T ss_pred             ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC--------C
Confidence            567888999999999999999964 5899999999743 33457889999999999999999999998763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++... ....+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        83 ~~~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~  158 (288)
T 3kfa_A           83 PFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLS  158 (288)
T ss_dssp             SEEEEEECCTTEEHHHHHHHC-CTTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGG
T ss_pred             CEEEEEEcCCCCcHHHHHHhc-ccCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccCccc
Confidence            689999999999999999753 23569999999999999999999999   78999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~  676 (747)
                      +.........           .....++..|++||.+....++.++|||||||++|||++ |..|+..............
T Consensus       159 ~~~~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~  227 (288)
T 3kfa_A          159 RLMTGDTYTA-----------HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK  227 (288)
T ss_dssp             GTSCSSSSEE-----------ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHT
T ss_pred             eeccCCcccc-----------ccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhc
Confidence            7654322111           111234557889999988899999999999999999999 8999876554443332221


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ..        .+.....++    ..+.+++.+||+.||.+|||+.|+++.|+.+....
T Consensus       228 ~~--------~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~  273 (288)
T 3kfa_A          228 DY--------RMERPEGCP----EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES  273 (288)
T ss_dssp             TC--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             cC--------CCCCCCCCC----HHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence            11        111112233    34889999999999999999999999998776643

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=7.1e-40  Score=351.03  Aligned_cols=245  Identities=18%  Similarity=0.242  Sum_probs=201.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++...   ....+.+.+|++++++++||||+++++++.+.      
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------  113 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN------  113 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS------
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC------
Confidence            46799999999999999999995 569999999997432   24457788999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus       114 --~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DF  185 (350)
T 1rdq_E          114 --SNLYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF  185 (350)
T ss_dssp             --SEEEEEEECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCC
T ss_pred             --CEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEccc
Confidence              4799999999999999999763   358999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++......               ...++++.|+|||++....++.++|||||||++|||++|+.||............
T Consensus       186 g~a~~~~~~~---------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i  250 (350)
T 1rdq_E          186 GFAKRVKGRT---------------WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKI  250 (350)
T ss_dssp             TTCEECSSCB---------------CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             ccceeccCCc---------------ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHH
Confidence            9997653211               1136788899999998889999999999999999999999998765433322211


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~  725 (747)
                      ....         ...+..++    ..+.+++.+||+.||.+||+     +.||++
T Consensus       251 ~~~~---------~~~p~~~~----~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          251 VSGK---------VRFPSHFS----SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHCC---------CCCCTTCC----HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HcCC---------CCCCCCCC----HHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence            1110         11112233    34889999999999999998     888875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=9.4e-40  Score=348.79  Aligned_cols=265  Identities=18%  Similarity=0.318  Sum_probs=205.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe--------CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeecc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL--------ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIES  508 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~  508 (747)
                      .++|.+.+.||+|+||.||+|+.        .+++.||||+++.. .....+.+.+|+++++++ +||||++++++|...
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            46788999999999999999985        34678999999754 234457789999999999 899999999999763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                              ...++||||+++|+|.+++.....             ...+++..++.++.|+++||+|||+   .+|+|||
T Consensus       114 --------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~D  182 (334)
T 2pvf_A          114 --------GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRD  182 (334)
T ss_dssp             --------SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             --------CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeCCC
Confidence                    368999999999999999976421             2348999999999999999999999   8999999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      |||+||+++.++.+||+|||+++...........          ....++..|++||.+....++.++|||||||++|||
T Consensus       183 lkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  252 (334)
T 2pvf_A          183 LAARNVLVTENNVMKIADFGLARDINNIDYYKKT----------TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI  252 (334)
T ss_dssp             CSGGGEEECTTCCEEECCCTTCEECTTTSSEECC----------SCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHH
T ss_pred             CccceEEEcCCCCEEEcccccccccccccccccc----------CCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHH
Confidence            9999999999999999999999765432211110          001234568899988888899999999999999999


Q ss_pred             hh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          656 LV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       656 lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      +| |+.|+.......+........        .+.....++.    .+.+++.+||+.||.+|||+.|+++.|+.+....
T Consensus       253 lt~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~  320 (334)
T 2pvf_A          253 FTLGGSPYPGIPVEELFKLLKEGH--------RMDKPANCTN----ELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  320 (334)
T ss_dssp             HTTSCCSSTTCCHHHHHHHHHHTC--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCcCcCCHHHHHHHHhcCC--------CCCCCccCCH----HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence            99 899987654433322221111        0111122333    4889999999999999999999999999887655


Q ss_pred             hh
Q 044236          735 AT  736 (747)
Q Consensus       735 ~~  736 (747)
                      ..
T Consensus       321 ~~  322 (334)
T 2pvf_A          321 TN  322 (334)
T ss_dssp             C-
T ss_pred             cc
Confidence            43

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=3.4e-40  Score=349.68  Aligned_cols=270  Identities=21%  Similarity=0.293  Sum_probs=203.9

Q ss_pred             CCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      |++.+.||+|+||.||++.+     .+++.||||+++... ....+.+.+|++++++++||||+++++++...+      
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~------  106 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAG------  106 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT------
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCC------
Confidence            48889999999999999864     258899999997543 344577899999999999999999999998743      


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+++|+|.+++...    .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg  179 (318)
T 3lxp_A          107 AASLQLVMEYVPLGSLRDYLPRH----SIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFG  179 (318)
T ss_dssp             TTEEEEEECCCTTCBHHHHGGGS----CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGG
T ss_pred             CceEEEEEecccCCcHHHHHhhC----CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEECCcc
Confidence            35789999999999999999753    48999999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++............         ....++..|++||.+....++.++|||||||++|||+||..|+........... .
T Consensus       180 ~a~~~~~~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~-~  249 (318)
T 3lxp_A          180 LAKAVPEGHEYYRVR---------EDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELI-G  249 (318)
T ss_dssp             GCEECCTTCSEEEC------------CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHH-C
T ss_pred             ccccccccccccccc---------cCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhh-c
Confidence            997664332111100         011234457899998888899999999999999999999998865332211110 0


Q ss_pred             ccCcC----CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          676 FGSQD----GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       676 ~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .....    .....++.......+...+..+.+++.+||+.||.+|||+.|+++.|+.+....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  312 (318)
T 3lxp_A          250 IAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKY  312 (318)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhh
Confidence            00000    000000111111112223345899999999999999999999999999876644

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.3e-39  Score=344.36  Aligned_cols=262  Identities=23%  Similarity=0.276  Sum_probs=205.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|.+.+.||+|+||.||+|+.      .+++.||||+++... ....+.+.+|+.+++++ +||||++++++|...  
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~--   99 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG--   99 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC--
Confidence            36788899999999999999984      347899999997543 23457789999999999 999999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCC---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCP---------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~---------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                            ...++||||+++|+|.+++.....               ...+++..+..++.|+++||+|||+   .+|+|||
T Consensus       100 ------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~d  170 (313)
T 1t46_A          100 ------GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRD  170 (313)
T ss_dssp             ------SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             ------CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCC
Confidence                  367999999999999999875421               1258999999999999999999999   8999999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      |||+||+++.++.+||+|||+++...........          ....++..|++||.+....++.++|||||||++|||
T Consensus       171 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  240 (313)
T 1t46_A          171 LAARNILLTHGRITKICDFGLARDIKNDSNYVVK----------GNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL  240 (313)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCTTSCTTSEEC----------SSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CccceEEEcCCCCEEEccccccccccccccceec----------cCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999765433221110          012345578999998888999999999999999999


Q ss_pred             hh-CCCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          656 LV-GPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       656 lt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      +| |+.|+...... ..........        .+.....++    ..+.+++.+||+.||.+|||+.|++++|+.+...
T Consensus       241 lt~g~~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          241 FSLGSSPYPGMPVDSKFYKMIKEGF--------RMLSPEHAP----AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             HTTTCCSSTTCCSSHHHHHHHHHTC--------CCCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HhCCCCCCCcccchhHHHHHhccCC--------CCCCcccCC----HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            99 89888754322 1222111110        111112223    3488999999999999999999999999987654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.5e-39  Score=344.57  Aligned_cols=264  Identities=17%  Similarity=0.219  Sum_probs=184.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++...        
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--------   75 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTE--------   75 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCT--------
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEEC--------
Confidence            46789999999999999999984 569999999997543 23346788999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENC---PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                      +..++||||++ |+|.+++....   ....+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        76 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~D  151 (317)
T 2pmi_A           76 NKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGD  151 (317)
T ss_dssp             TEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECC
T ss_pred             CeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECc
Confidence            47899999998 59998886431   22458999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLN  671 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~  671 (747)
                      ||+++.........            ....++..|+|||++.. ..++.++|||||||++|||++|+.||..... ..+.
T Consensus       152 fg~~~~~~~~~~~~------------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~  219 (317)
T 2pmi_A          152 FGLARAFGIPVNTF------------SSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLK  219 (317)
T ss_dssp             CSSCEETTSCCCCC------------CCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH
T ss_pred             CccceecCCCcccC------------CCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHH
Confidence            99997653221100            01235677899998865 4689999999999999999999999875443 2233


Q ss_pred             HHHhccCcCCc------cc--cccccc------------cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDGR------RR--IVDPVV------------LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~~------~~--~~d~~~------------~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+.........      ..  ...+.+            ...........+.+++.+||+.||++|||+.|+++.
T Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          220 LIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             HHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             HHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence            22221110000      00  000000            000011223458899999999999999999999864

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-40  Score=350.20  Aligned_cols=248  Identities=20%  Similarity=0.260  Sum_probs=197.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||++....   ......+.+|+++++.++|||||++++++...      
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~------   81 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTP------   81 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECS------
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC------
Confidence            36789999999999999999995 679999999997432   22345788999999999999999999999873      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+ +|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        82 --~~~~lv~E~~-~g~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DF  152 (336)
T 3h4j_B           82 --TDIVMVIEYA-GGELFDYIVEK---KRMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADF  152 (336)
T ss_dssp             --SEEEEEECCC-CEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCS
T ss_pred             --CEEEEEEECC-CCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEe
Confidence              4789999999 78999988753   458999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      |+++.........             ..++++.|+|||++....+ +.++|||||||++|||++|+.||.......+   
T Consensus       153 G~s~~~~~~~~~~-------------~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~---  216 (336)
T 3h4j_B          153 GLSNIMTDGNFLK-------------TSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL---  216 (336)
T ss_dssp             SCTBTTTTSBTTC-------------CCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC---
T ss_pred             ccceeccCCcccc-------------cccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH---
Confidence            9997654332111             1245678899999887765 7899999999999999999999965332110   


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                         .  ..... .....    +...+..+.+++.+||+.||.+|||+.|+++.-
T Consensus       217 ---~--~~i~~-~~~~~----p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp  260 (336)
T 3h4j_B          217 ---F--KKVNS-CVYVM----PDFLSPGAQSLIRRMIVADPMQRITIQEIRRDP  260 (336)
T ss_dssp             ---B--CCCCS-SCCCC----CTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCH
T ss_pred             ---H--HHHHc-CCCCC----cccCCHHHHHHHHHHcCCChhHCcCHHHHHhCh
Confidence               0  00000 00111    222234488999999999999999999998754

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.2e-40  Score=351.82  Aligned_cols=268  Identities=14%  Similarity=0.102  Sum_probs=205.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||++.....  .+.+.+|+++++++ +||||+++++++...        .
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~--------~   78 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCG--------K   78 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEET--------T
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecC--------C
Confidence            5788999999999999999994 6799999999875432  24578999999999 999999999998773        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc-----EEEe
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI-----AKLS  592 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-----~kl~  592 (747)
                      ..++||||+ +|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.     +||+
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~  152 (330)
T 2izr_A           79 YNAMVLELL-GPSLEDLFDLC--DRTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHII  152 (330)
T ss_dssp             EEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEEC
T ss_pred             ccEEEEEeC-CCCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEE
Confidence            789999999 99999999764  3469999999999999999999999   89999999999999998887     9999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+++...........     .........++..|+|||++....++.++|||||||++|||++|+.||.........+
T Consensus       153 DFg~a~~~~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~  227 (330)
T 2izr_A          153 DFALAKEYIDPETKKHI-----PYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKE  227 (330)
T ss_dssp             CCTTCEESBCTTTCCBC-----CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHH
T ss_pred             EcccceeeecCCCCccc-----cccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHH
Confidence            99999865433221110     0001122457788999999999899999999999999999999999997533222211


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ......... ...........+    + .+.+++..||+.||.+||++.+|.+.|+.+....
T Consensus       228 ~~~~i~~~~-~~~~~~~~~~~~----p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~  283 (330)
T 2izr_A          228 RYQKIGDTK-RATPIEVLCENF----P-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK  283 (330)
T ss_dssp             HHHHHHHHH-HHSCHHHHTTTC----H-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhh-ccCCHHHHhccC----h-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence            111000000 000000011111    2 5899999999999999999999999999776543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.9e-40  Score=350.52  Aligned_cols=275  Identities=19%  Similarity=0.293  Sum_probs=205.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-----CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||.||+|++     .+|+.||||++........+.+.+|++++++++||||+++++++...+    
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----  115 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG----  115 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecC----
Confidence            35688899999999999999984     368999999998766666778999999999999999999999987632    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....++||||+++|+|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus       116 --~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~D  188 (326)
T 2w1i_A          116 --RRNLKLIMEYLPYGSLRDYLQKH--KERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGD  188 (326)
T ss_dssp             ----CCEEEECCCTTCBHHHHHHHS--TTSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECC
T ss_pred             --CCceEEEEECCCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEec
Confidence              34679999999999999999764  3458999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++.............         ...++..|++||.+....++.++|||||||++|||+||..|+...........
T Consensus       189 fg~~~~~~~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~  259 (326)
T 2w1i_A          189 FGLTKVLPQDKEYYKVKE---------PGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMI  259 (326)
T ss_dssp             CTTCEECCSSCSEEECSS---------CCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHH
T ss_pred             Ccchhhcccccccccccc---------CCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhh
Confidence            999976643322111000         01233457889988888889999999999999999999888764322111110


Q ss_pred             HhccCcC----CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          674 ASFGSQD----GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       674 ~~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .......    ...+.+........+...+..+.+++.+||+.||++|||+.|+++.|+.+...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          260 GNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             CTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            0000000    00000000000011222334588999999999999999999999999988653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-39  Score=344.90  Aligned_cols=263  Identities=19%  Similarity=0.299  Sum_probs=199.3

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC-----CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN-----GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~-----g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|...+.||+|+||.||+|+...     +..||||+++... ......+.+|++++++++||||+++++++...     
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----  118 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY-----  118 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-----
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecC-----
Confidence            356677899999999999998532     3469999997532 33456789999999999999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus       119 ---~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~D  190 (333)
T 1mqb_A          119 ---KPMMIITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSD  190 (333)
T ss_dssp             ---SSEEEEEECCTTEEHHHHHHHT--TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECC
T ss_pred             ---CCcEEEEeCCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECC
Confidence               4789999999999999999764  3469999999999999999999999   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++...........         .....++..|++||.+....++.++|||||||++|||++ |+.||.......+..
T Consensus       191 fg~~~~~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~  261 (333)
T 1mqb_A          191 FGLSRVLEDDPEATYT---------TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMK  261 (333)
T ss_dssp             CCC--------------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHH
T ss_pred             CCcchhhccccccccc---------cCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence            9999765433211110         001122446889999888889999999999999999999 999987544332222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQAT  736 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~  736 (747)
                      ......        .+.....++    ..+.+++.+||+.||++||++.|+++.|+.+.+....
T Consensus       262 ~~~~~~--------~~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~  313 (333)
T 1mqb_A          262 AINDGF--------RLPTPMDCP----SAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDS  313 (333)
T ss_dssp             HHHTTC--------CCCCCTTCB----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGG
T ss_pred             HHHCCC--------cCCCcccCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchh
Confidence            211110        011112233    3488999999999999999999999999988765443

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=348.90  Aligned_cols=249  Identities=18%  Similarity=0.230  Sum_probs=185.9

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ..++|++.+.||+|+||.||+|+.. +++.||||+++...  ..+.+.+|++++++++||||++++++|...        
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--------  120 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETP--------  120 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECS--------
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecC--------
Confidence            3567899999999999999999964 58899999997432  345688999999999999999999999763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---CCcEEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---HRIAKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~D  593 (747)
                      ...++||||+++|+|.+++..   ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.   ++.+||+|
T Consensus       121 ~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~D  194 (349)
T 2w4o_A          121 TEISLVLELVTGGELFDRIVE---KGYYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIAD  194 (349)
T ss_dssp             SEEEEEECCCCSCBHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECC
T ss_pred             CeEEEEEEeCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEcc
Confidence            478999999999999999875   3458999999999999999999999   78999999999999975   88999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh--hHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF--LLN  671 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~--~~~  671 (747)
                      ||+++........             ....++..|++||++....++.++|||||||++|||++|..||......  ...
T Consensus       195 fg~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~  261 (349)
T 2w4o_A          195 FGLSKIVEHQVLM-------------KTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFR  261 (349)
T ss_dssp             CC-----------------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHH
T ss_pred             CccccccCccccc-------------ccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHH
Confidence            9999765432111             1134567899999998888999999999999999999999888654332  222


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .+.....     .. .+.....+    ...+.+++.+||+.||++|||+.|+++
T Consensus       262 ~i~~~~~-----~~-~~~~~~~~----~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          262 RILNCEY-----YF-ISPWWDEV----SLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             HHHTTCC-----CC-CTTTTTTS----CHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHhCCC-----cc-CCchhhhC----CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            2221100     00 11111223    334889999999999999999999986

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1.1e-39  Score=348.95  Aligned_cols=251  Identities=19%  Similarity=0.242  Sum_probs=195.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||+++...   ....+.+.+|..+++++ +|||||++++++...     
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~-----   82 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE-----   82 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-----
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeC-----
Confidence            35788999999999999999995 568999999997532   33456788999999988 899999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus        83 ---~~~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~D  153 (345)
T 3a8x_A           83 ---SRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTD  153 (345)
T ss_dssp             ---SEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             ---CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEe
Confidence               4799999999999999998753   358999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh------
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA------  667 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~------  667 (747)
                      ||+++........            ....+++..|+|||++....++.++|||||||++|||++|+.||.....      
T Consensus       154 FG~a~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~  221 (345)
T 3a8x_A          154 YGMCKEGLRPGDT------------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ  221 (345)
T ss_dssp             GGGCBCSCCTTCC------------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC------
T ss_pred             ccccccccCCCCc------------ccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCccccccccc
Confidence            9999753221110            1123567789999999888999999999999999999999999863210      


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH------HHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF------EDVLW  725 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~------~evl~  725 (747)
                      .....+.......      ...++..+    ...+.+++.+||+.||.+||++      .|+++
T Consensus       222 ~~~~~~~~~i~~~------~~~~p~~~----s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~  275 (345)
T 3a8x_A          222 NTEDYLFQVILEK------QIRIPRSL----SVKAASVLKSFLNKDPKERLGCHPQTGFADIQG  275 (345)
T ss_dssp             -CHHHHHHHHHHC------CCCCCTTS----CHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHT
T ss_pred             ccHHHHHHHHHcC------CCCCCCCC----CHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhc
Confidence            0001110000000      01111222    3348899999999999999995      56654

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=9.3e-40  Score=339.49  Aligned_cols=258  Identities=20%  Similarity=0.303  Sum_probs=204.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|+..+++.||||+++... ...+.+.+|++++++++||||+++++++..         +.
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---------~~   81 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ---------EP   81 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS---------SS
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC---------CC
Confidence            35788899999999999999998888899999997433 345788999999999999999999998864         24


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        82 ~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  157 (279)
T 1qpc_A           82 IYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (279)
T ss_dssp             CEEEEECCTTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cEEEEecCCCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECCCcccc
Confidence            799999999999999987531 1258999999999999999999999   899999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ...........           ...++..|++||.+....++.++|||||||++|||++ |+.|+...............
T Consensus       158 ~~~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~  226 (279)
T 1qpc_A          158 LIEDNEYTARE-----------GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG  226 (279)
T ss_dssp             ECSSSCEECCT-----------TCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT
T ss_pred             cccCccccccc-----------CCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcc
Confidence            65432211110           0123456889998888889999999999999999999 89898754433222211111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .        .+.....++    ..+.+++.+||+.||++|||+.++++.|+.+...
T Consensus       227 ~--------~~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  270 (279)
T 1qpc_A          227 Y--------RMVRPDNCP----EELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (279)
T ss_dssp             C--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             c--------CCCCccccc----HHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence            0        011112233    3488999999999999999999999999987553

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=348.87  Aligned_cols=277  Identities=18%  Similarity=0.281  Sum_probs=196.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHH--HhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDF--LSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~--l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. +++.||||++....   ...+..|.++  +..++||||+++++++....   ....
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~---~~~~   84 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVT---ADGR   84 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC---TTSC
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccc---cCCC
Confidence            46788999999999999999987 68999999997433   2344444444  55689999999998765422   1223


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------CCCcccCCCCCCceeecCCCcEE
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV------ISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------~~~ivHrDlk~~NILld~~~~~k  590 (747)
                      ...++||||+++|+|.+++...    ..+|..+..++.|+++||+|||+..      .++|+||||||+|||++.++.+|
T Consensus        85 ~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k  160 (336)
T 3g2f_A           85 MEYLLVMEYYPNGSLXKYLSLH----TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCV  160 (336)
T ss_dssp             EEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEE
T ss_pred             ceEEEEEecCCCCcHHHHHhhc----ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEE
Confidence            4679999999999999999753    3589999999999999999999831      11999999999999999999999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-------cCCCcCCceeehhHHHHHHhhCCCCCC
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-------QRTKLEDDVYNFGFILLESLVGPIVTG  663 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------~~~s~k~DVwSfGvvl~Elltg~~p~~  663 (747)
                      |+|||+++.+...........    ........++..|+|||++..       ..++.++|||||||++|||+||..|+.
T Consensus       161 L~DFG~a~~~~~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~  236 (336)
T 3g2f_A          161 ISDFGLSMRLTGNRLVRPGEE----DNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLF  236 (336)
T ss_dssp             ECCCTTCEECSSSSCC-------------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGS
T ss_pred             EeeccceeecccccccCcccc----ccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCC
Confidence            999999976643221110000    000111245678899998865       456789999999999999999965543


Q ss_pred             CChh-hh--------------HHHHHhccCcCCccccccccccCCC--CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          664 KGEA-FL--------------LNEMASFGSQDGRRRIVDPVVLTTC--SQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       664 ~~~~-~~--------------~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .... ..              ...+.........    .+.+...+  .......+.+++.+||+.||++|||+.|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~  312 (336)
T 3g2f_A          237 PGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQ----RPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEER  312 (336)
T ss_dssp             TTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCC----CCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             CccchhHHHHhhhcccCCCchHHHHHhhhccccc----CCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHH
Confidence            2111 00              0001100001111    11111111  22356679999999999999999999999999


Q ss_pred             HHHHHHHh
Q 044236          727 LQYAAQVQ  734 (747)
Q Consensus       727 L~~~~~~~  734 (747)
                      |+.+...-
T Consensus       313 L~~ll~~~  320 (336)
T 3g2f_A          313 MAELMMIW  320 (336)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHH
Confidence            99887543

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=8.3e-40  Score=345.57  Aligned_cols=266  Identities=15%  Similarity=0.180  Sum_probs=198.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||+++...   ......+.+|++++++++|||||++++++....    .
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~   86 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET----P   86 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE----T
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC----C
Confidence            36789999999999999999994 679999999997532   233467889999999999999999999987643    1


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....++||||+++|+|.++++..   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        87 ~~~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Df  160 (311)
T 3ork_A           87 AGPLPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDF  160 (311)
T ss_dssp             TEEEEEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCC
T ss_pred             CCcccEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeec
Confidence            123469999999999999999753   358999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++..........         ......++..|++||.+....++.++|||||||++|||+||+.||............
T Consensus       161 g~a~~~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~  231 (311)
T 3ork_A          161 GIARAIADSGNSVT---------QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQH  231 (311)
T ss_dssp             SCC---------------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             cCcccccccccccc---------cccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence            99976543321111         011134677899999998889999999999999999999999999765443322211


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHH-HHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL-WNLQYAAQ  732 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl-~~L~~~~~  732 (747)
                      .....     .........++    ..+.+++.+||+.||.+||++.+++ ..+.....
T Consensus       232 ~~~~~-----~~~~~~~~~~~----~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~  281 (311)
T 3ork_A          232 VREDP-----IPPSARHEGLS----ADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  281 (311)
T ss_dssp             HHCCC-----CCHHHHSTTCC----HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred             hcCCC-----CCcccccCCCC----HHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence            11100     00011112233    3488999999999999999766665 45554433

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=362.63  Aligned_cols=261  Identities=17%  Similarity=0.235  Sum_probs=202.9

Q ss_pred             CHHHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeee
Q 044236          431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCI  506 (747)
Q Consensus       431 ~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~  506 (747)
                      .+++.....++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|..++.+++|||||+++++|.
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            3455556678999999999999999999995 579999999997432   223345788999999999999999999987


Q ss_pred             ccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC
Q 044236          507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH  586 (747)
Q Consensus       507 ~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~  586 (747)
                      +.        ...++|||||++|+|.+++...  ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.+
T Consensus       132 ~~--------~~~~lVmE~~~gg~L~~~l~~~--~~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~  198 (412)
T 2vd5_A          132 DE--------NYLYLVMEYYVGGDLLTLLSKF--GERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRC  198 (412)
T ss_dssp             CS--------SEEEEEECCCCSCBHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTT
T ss_pred             eC--------CEEEEEEcCCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCC
Confidence            63        4799999999999999999764  2368999999999999999999999   899999999999999999


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee-------ccCCCcCCceeehhHHHHHHhhCC
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-------IQRTKLEDDVYNFGFILLESLVGP  659 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~~~s~k~DVwSfGvvl~Elltg~  659 (747)
                      +.+||+|||+++.........           ....+++..|+|||++.       ...++.++|||||||++|||++|+
T Consensus       199 g~vkL~DFGla~~~~~~~~~~-----------~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~  267 (412)
T 2vd5_A          199 GHIRLADFGSCLKLRADGTVR-----------SLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQ  267 (412)
T ss_dssp             SCEEECCCTTCEECCTTSCEE-----------CSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEeechhheeccCCCccc-----------cceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCC
Confidence            999999999997654322111           11235778899999887       356899999999999999999999


Q ss_pred             CCCCCChhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCC---CCHHHHHH
Q 044236          660 IVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR---PSFEDVLW  725 (747)
Q Consensus       660 ~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R---Ps~~evl~  725 (747)
                      .||....... ...+.....     ...-|.....++.    .+.+++.+||. +|.+|   |++.||++
T Consensus       268 ~Pf~~~~~~~~~~~i~~~~~-----~~~~p~~~~~~s~----~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          268 TPFYADSTAETYGKIVHYKE-----HLSLPLVDEGVPE----EARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             CTTCCSSHHHHHHHHHTHHH-----HCCCC----CCCH----HHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHhccc-----CcCCCccccCCCH----HHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence            9987544332 222221100     0001111122333    48899999999 99998   68999875

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.4e-39  Score=336.79  Aligned_cols=259  Identities=19%  Similarity=0.261  Sum_probs=204.0

Q ss_pred             hCCCccc-cccCCCCeeEEEEEeC---CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLS-FMGEGSRGKLYKGRLE---NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~-~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|.+.+ .||+|+||.||+|+..   +++.||||+++.. .....+.+.+|++++++++||||+++++++..       
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------   81 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-------   81 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-------
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecC-------
Confidence            4566665 8999999999999853   5788999999754 33456788999999999999999999999843       


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus        82 --~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Df  154 (287)
T 1u59_A           82 --EALMLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDF  154 (287)
T ss_dssp             --SSEEEEEECCTTEEHHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCC
T ss_pred             --CCcEEEEEeCCCCCHHHHHHhC--CccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECcc
Confidence              2589999999999999998753  4569999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |+++............         ....++..|++||.+....++.++|||||||++|||+| |+.||...........
T Consensus       155 g~~~~~~~~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~  225 (287)
T 1u59_A          155 GLSKALGADDSYYTAR---------SAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAF  225 (287)
T ss_dssp             TTCEECTTCSCEECCC---------CSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHH
T ss_pred             cceeeeccCcceeecc---------ccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHH
Confidence            9997654322211100         00123456889998888889999999999999999999 9999876543332222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .....        .+.....++    ..+.+++.+||+.||.+||++.|+++.|+.+...
T Consensus       226 i~~~~--------~~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  273 (287)
T 1u59_A          226 IEQGK--------RMECPPECP----PELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  273 (287)
T ss_dssp             HHTTC--------CCCCCTTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HhcCC--------cCCCCCCcC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            22111        111122333    3488999999999999999999999999987553

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=5.4e-40  Score=372.19  Aligned_cols=256  Identities=21%  Similarity=0.311  Sum_probs=204.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|++.++..||||+++... ...+.|.+|+++|++++|||||+++++|..         ..
T Consensus       266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~---------~~  335 (535)
T 2h8h_A          266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE---------EP  335 (535)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS---------SS
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee---------cc
Confidence            45688889999999999999998888889999998543 345789999999999999999999999864         25


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++|||||++|+|.++++... ...+++..++.++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus       336 ~~lv~e~~~~gsL~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~  411 (535)
T 2h8h_A          336 IYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  411 (535)
T ss_dssp             CEEEECCCTTEEHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTT
T ss_pred             ceEeeehhcCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcccccce
Confidence            799999999999999997531 2358999999999999999999999   889999999999999999999999999998


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ............           ..++..|+|||.+....++.++|||||||++|||+| |+.||.......+.......
T Consensus       412 ~~~~~~~~~~~~-----------~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~  480 (535)
T 2h8h_A          412 LIEDNEYTARQG-----------AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG  480 (535)
T ss_dssp             TCCCHHHHTTCS-----------TTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTT
T ss_pred             ecCCCceecccC-----------CcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence            765432211110           112346889999888899999999999999999999 89998754433222222111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      .        .......++    ..+.+++.+||+.||++|||+.+|++.|+.+.
T Consensus       481 ~--------~~~~~~~~~----~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~  522 (535)
T 2h8h_A          481 Y--------RMPCPPECP----ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  522 (535)
T ss_dssp             C--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred             C--------CCCCCCCCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence            0        011112333    34889999999999999999999999998653

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=2.5e-39  Score=339.63  Aligned_cols=261  Identities=21%  Similarity=0.309  Sum_probs=201.5

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC----CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN----GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .+|++.+.||+|+||.||+|+..+    +..||||.+.... ....+.+.+|+.++++++||||++++++|...      
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~------   98 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRS------   98 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCS------
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcC------
Confidence            457888999999999999998532    3368999987533 34557789999999999999999999997653      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       ....++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        99 -~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Df  172 (298)
T 3f66_A           99 -EGSPLVVLPYMKHGDLRNFIRNE--THNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADF  172 (298)
T ss_dssp             -SSCCEEEEECCTTCBHHHHHHCT--TCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSC
T ss_pred             -CCceEEEEeCCCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECcc
Confidence             24679999999999999999753  4568999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~~  673 (747)
                      |+++............        .....++..|++||.+....++.++|||||||++|||++| .+|+...........
T Consensus       173 g~a~~~~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~  244 (298)
T 3f66_A          173 GLARDMYDKEYYSVHN--------KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVY  244 (298)
T ss_dssp             GGGCCCSCGGGCBC-------------CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHH
T ss_pred             cccccccccchhcccc--------ccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHH
Confidence            9997665433211110        0112344568899999888999999999999999999995 666654433322222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ......        +.....++.    .+.+++.+||+.||.+|||+.|+++.|+.+..
T Consensus       245 ~~~~~~--------~~~~~~~~~----~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  291 (298)
T 3f66_A          245 LLQGRR--------LLQPEYCPD----PLYEVMLKCWHPKAEMRPSFSELVSRISAIFS  291 (298)
T ss_dssp             HHTTCC--------CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HhcCCC--------CCCCccCCH----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            111110        011122233    48899999999999999999999999998765

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.1e-39  Score=340.73  Aligned_cols=259  Identities=22%  Similarity=0.350  Sum_probs=192.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+...  .||||+++..  .....+.+.+|++++++++||||+++++++..         
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---------   91 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA---------   91 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---------
T ss_pred             ccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccC---------
Confidence            3678899999999999999998643  5999998743  23455789999999999999999999997643         


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        92 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~  166 (289)
T 3og7_A           92 PQLAIVTQWCEGSSLYHHLHAS--ETKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGL  166 (289)
T ss_dssp             SSCEEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC-
T ss_pred             CccEEEEEecCCCcHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEcccee
Confidence            3579999999999999998654  4569999999999999999999999   8899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNE  672 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~  672 (747)
                      ++.........          ......++..|++||.+.   ...++.++|||||||++|||++|+.||.... ...+..
T Consensus       167 ~~~~~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~  236 (289)
T 3og7_A          167 ATEKSRWSGSH----------QFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIE  236 (289)
T ss_dssp             ---------------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHH
T ss_pred             ccccccccccc----------cccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHH
Confidence            97543221110          011134567788999875   5668889999999999999999999987533 222222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ..........    .+.....++    ..+.+++.+||+.||.+|||+.|++++|+.+.
T Consensus       237 ~~~~~~~~~~----~~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          237 MVGRGSLSPD----LSKVRSNCP----KRMKRLMAECLKKKRDERPSFPRILAEIEELA  287 (289)
T ss_dssp             HHHHTSCCCC----TTSSCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HhcccccCcc----hhhccccCC----HHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence            2221111000    011112333    44899999999999999999999999998764

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.4e-39  Score=348.91  Aligned_cols=246  Identities=25%  Similarity=0.321  Sum_probs=195.1

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++....   ....+.+.+|++++++++|||||+++++|...       
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-------  126 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-------  126 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-------
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-------
Confidence            4588899999999999999994 679999999997432   23346788999999999999999999999873       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||++ |+|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       127 -~~~~lv~e~~~-g~l~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG  199 (348)
T 1u5q_A          127 -HTAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFG  199 (348)
T ss_dssp             -TEEEEEEECCS-EEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCT
T ss_pred             -CeEEEEEecCC-CCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeecc
Confidence             47899999997 6888877543  3468999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLN  671 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~  671 (747)
                      +++......                ...++..|+|||++.   ...++.++|||||||++|||++|+.|+...... .+.
T Consensus       200 ~a~~~~~~~----------------~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~  263 (348)
T 1u5q_A          200 SASIMAPAN----------------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALY  263 (348)
T ss_dssp             TCBSSSSBC----------------CCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH
T ss_pred             CceecCCCC----------------cccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHH
Confidence            997653211                124566788999874   567899999999999999999999988654322 222


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .+.....    ..    .....++.    .+.+++.+||+.||.+|||+.|+++..
T Consensus       264 ~~~~~~~----~~----~~~~~~~~----~l~~li~~~l~~dP~~Rps~~~ll~h~  307 (348)
T 1u5q_A          264 HIAQNES----PA----LQSGHWSE----YFRNFVDSCLQKIPQDRPTSEVLLKHR  307 (348)
T ss_dssp             HHHHSCC----CC----CCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHTTCH
T ss_pred             HHHhcCC----CC----CCCCCCCH----HHHHHHHHHcccChhhCcCHHHHhhCh
Confidence            2221110    00    00112333    478899999999999999999998643

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.8e-39  Score=337.38  Aligned_cols=254  Identities=20%  Similarity=0.274  Sum_probs=201.3

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      +.++|++.+.||+|+||.||+|+. .+++.||||++....   ......+.+|+.++++++||||++++++|...     
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   81 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA-----   81 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecC-----
Confidence            357899999999999999999985 568899999986432   23356788999999999999999999999763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        82 ---~~~~lv~e~~~~~~l~~~l~~~---~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~D  152 (279)
T 3fdn_A           82 ---TRVYLILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIAD  152 (279)
T ss_dssp             ---SEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCGGGEEECTTSCEEECS
T ss_pred             ---CEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHhEEEcCCCCEEEEe
Confidence               4789999999999999998753   358999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||++.........              ...++..|++||.+....++.++|||||||++|||++|+.||...........
T Consensus       153 fg~~~~~~~~~~~--------------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~  218 (279)
T 3fdn_A          153 FGWSVHAPSSRRT--------------DLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKR  218 (279)
T ss_dssp             CCEESCC----------------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHH
T ss_pred             ccccccCCccccc--------------ccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHH
Confidence            9998544322111              12456678899998888899999999999999999999999976543332221


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ....         .......++    ..+.+++.+||+.||.+|||+.|++++--....
T Consensus       219 ~~~~---------~~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~  264 (279)
T 3fdn_A          219 ISRV---------EFTFPDFVT----EGARDLISRLLKHNPSQRPMLREVLEHPWITAN  264 (279)
T ss_dssp             HHHT---------CCCCCTTSC----HHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHH
T ss_pred             HHhC---------CCCCCCcCC----HHHHHHHHHHhccChhhCCCHHHHhhCccccCC
Confidence            1111         011112223    347899999999999999999999987544333

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=9.2e-40  Score=350.18  Aligned_cols=248  Identities=20%  Similarity=0.251  Sum_probs=199.0

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~  512 (747)
                      ..++|++.+.||+|+||+||+|+.. +|+.||||+++..   .....+.+.+|..++..+ +||||+++++++...    
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~----   93 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM----   93 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECS----
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcC----
Confidence            3578999999999999999999964 5899999999753   234556788999999988 899999999998763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                          ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+
T Consensus        94 ----~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~  163 (353)
T 2i0e_A           94 ----DRLYFVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIA  163 (353)
T ss_dssp             ----SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEEC
T ss_pred             ----CEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEE
Confidence                4899999999999999999753   358999999999999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-H
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-N  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~  671 (747)
                      |||+++........            ....++++.|+|||++....++.++|||||||++|||++|+.||.......+ .
T Consensus       164 DFG~a~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~  231 (353)
T 2i0e_A          164 DFGMCKENIWDGVT------------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQ  231 (353)
T ss_dssp             CCTTCBCCCCTTCC------------BCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             eCCcccccccCCcc------------cccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            99999753221110            1124577889999999888999999999999999999999999976543332 2


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLW  725 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~  725 (747)
                      .+...          ....+...+    ..+.+++.+||+.||.+||+     +.||++
T Consensus       232 ~i~~~----------~~~~p~~~s----~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~  276 (353)
T 2i0e_A          232 SIMEH----------NVAYPKSMS----KEAVAICKGLMTKHPGKRLGCGPEGERDIKE  276 (353)
T ss_dssp             HHHHC----------CCCCCTTSC----HHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred             HHHhC----------CCCCCCCCC----HHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            22221          011112233    34889999999999999995     467764

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.1e-40  Score=360.17  Aligned_cols=258  Identities=18%  Similarity=0.216  Sum_probs=202.5

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIES  508 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~  508 (747)
                      .++....++|++.+.||+|+||+||+|+. .+++.||||+++...   ....+.+.+|+.+++.++|||||+++++|.+.
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~  141 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  141 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            44555678899999999999999999995 468999999997422   22334578899999999999999999999763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                              ...++|||||++|+|.++++..    .+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.
T Consensus       142 --------~~~~lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~  206 (410)
T 3v8s_A          142 --------RYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGH  206 (410)
T ss_dssp             --------SEEEEEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSC
T ss_pred             --------CEEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCC
Confidence                    4799999999999999998752    48899999999999999999999   89999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC----CCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR----TKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      +||+|||+++.........           ....++++.|+|||++....    ++.++|||||||++|||++|+.||..
T Consensus       207 ikL~DFG~a~~~~~~~~~~-----------~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~  275 (410)
T 3v8s_A          207 LKLADFGTCMKMNKEGMVR-----------CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA  275 (410)
T ss_dssp             EEECCCTTCEECCTTSEEE-----------CCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             EEEeccceeEeeccCCccc-----------ccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCC
Confidence            9999999997654322111           11235778899999987655    78899999999999999999999875


Q ss_pred             Chhhh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCC--CCCHHHHHHH
Q 044236          665 GEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS--RPSFEDVLWN  726 (747)
Q Consensus       665 ~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~  726 (747)
                      ..... ...+......   ...  |. ...++.    .+.+++.+||+.+|.+  ||++.||+++
T Consensus       276 ~~~~~~~~~i~~~~~~---~~~--p~-~~~~s~----~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          276 DSLVGTYSKIMNHKNS---LTF--PD-DNDISK----EAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             SSHHHHHHHHHTHHHH---CCC--CT-TCCCCH----HHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             CChhhHHHHHHhcccc---ccC--CC-cccccH----HHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence            54332 2222211000   000  10 112233    4889999999999998  9999999864

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.6e-39  Score=343.14  Aligned_cols=275  Identities=17%  Similarity=0.237  Sum_probs=200.2

Q ss_pred             HHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC--CCCCcceeeeeeeccCCCCC
Q 044236          436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL--QHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       436 ~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l--~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ....++|++.+.||+|+||.||+|+.. |+.||||++...   ....+.+|.+++..+  +||||+++++++....    
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~----  104 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGT----  104 (337)
T ss_dssp             TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC----
T ss_pred             cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCC----
Confidence            344578999999999999999999975 899999998643   234455566666554  8999999999988642    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCcccCCCCCCceeecCCCc
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV-----ISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrDlk~~NILld~~~~  588 (747)
                      ......++||||+++|+|.++++..    .+++..+..++.|++.||+|||+..     .++|+||||||+|||++.++.
T Consensus       105 ~~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~  180 (337)
T 3mdy_A          105 GSWTQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGT  180 (337)
T ss_dssp             GGGCEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred             CCCCceEEEEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCC
Confidence            1125789999999999999999753    5899999999999999999999831     128999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcC------CceeehhHHHHHHhhC----
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLE------DDVYNFGFILLESLVG----  658 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k------~DVwSfGvvl~Elltg----  658 (747)
                      +||+|||+++...........        ......++..|+|||.+....++.+      +|||||||++|||+||    
T Consensus       181 ~kl~Dfg~a~~~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~  252 (337)
T 3mdy_A          181 CCIADLGLAVKFISDTNEVDI--------PPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSG  252 (337)
T ss_dssp             EEECCCTTCEECC-----------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBT
T ss_pred             EEEEeCCCceeeccccccccC--------CCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcc
Confidence            999999999765433221110        0011246678899999877766665      8999999999999999    


Q ss_pred             ------CCCCCCChh--hhHHHHHhccCcCCccccccccccCC-CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          659 ------PIVTGKGEA--FLLNEMASFGSQDGRRRIVDPVVLTT-CSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       659 ------~~p~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                            +.|+.....  .....+........    ..+..... .+.++...+.+++.+||+.||.+|||+.||+++|+.
T Consensus       253 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~  328 (337)
T 3mdy_A          253 GIVEEYQLPYHDLVPSDPSYEDMREIVCIKK----LRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAK  328 (337)
T ss_dssp             TBCCCCCCTTTTTSCSSCCHHHHHHHHTTSC----CCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHH
T ss_pred             cccccccccHhhhcCCCCchhhhHHHHhhhc----cCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHH
Confidence                  455542110  01111111111111    11111111 123567779999999999999999999999999998


Q ss_pred             HHHHh
Q 044236          730 AAQVQ  734 (747)
Q Consensus       730 ~~~~~  734 (747)
                      +.+..
T Consensus       329 l~~~~  333 (337)
T 3mdy_A          329 MSESQ  333 (337)
T ss_dssp             HHHTT
T ss_pred             HHhhc
Confidence            87643

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=3.5e-39  Score=341.11  Aligned_cols=269  Identities=17%  Similarity=0.272  Sum_probs=198.6

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC----CCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      ..++|.+.+.||+|+||.||+|+..    +++.||||+++..  .....+.+.+|+.++++++||||+++++++...+. 
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-  110 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS-  110 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc-
Confidence            3567888999999999999999843    3568999998743  23445778999999999999999999999986431 


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSEN---CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                        ......++||||+++|+|.+++...   .....+++..++.++.|+++||.|||+   .+|+||||||+||+++.++.
T Consensus       111 --~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~  185 (313)
T 3brb_A          111 --QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLRDDMT  185 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEECTTSC
T ss_pred             --cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCc
Confidence              1123569999999999999988432   124569999999999999999999999   78999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEA  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~  667 (747)
                      +||+|||+++...........          ....++..|++||.+....++.++|||||||++|||++ |..|+.....
T Consensus       186 ~kl~Dfg~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  255 (313)
T 3brb_A          186 VCVADFGLSKKIYSGDYYRQG----------RIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN  255 (313)
T ss_dssp             EEECSCSCC--------------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             EEEeecCcceecccccccCcc----------cccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH
Confidence            999999999765432211100          01123456889999888889999999999999999999 7888875544


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ...........        .+.....++    ..+.+++.+||+.||.+|||+.++++.|+.+....
T Consensus       256 ~~~~~~~~~~~--------~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l  310 (313)
T 3brb_A          256 HEMYDYLLHGH--------RLKQPEDCL----DELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL  310 (313)
T ss_dssp             GGHHHHHHTTC--------CCCCBTTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCC--------CCCCCcccc----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            33322221111        011112233    34889999999999999999999999999887644

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.4e-39  Score=355.12  Aligned_cols=271  Identities=18%  Similarity=0.232  Sum_probs=200.1

Q ss_pred             hhCCCccccccCC--CCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEG--SRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G--~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|  +||.||+|+. .+|+.||||+++...  ....+.+.+|+.++++++|||||++++++...     
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----   98 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD-----   98 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEEC-----
Confidence            4679999999999  9999999995 479999999997543  34456788899999999999999999999873     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++|||||++|+|.+++.... ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus        99 ---~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~d  171 (389)
T 3gni_B           99 ---NELWVVTSFMAYGSAKDLICTHF-MDGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSG  171 (389)
T ss_dssp             ---TEEEEEEECCTTCBHHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECC
T ss_pred             ---CEEEEEEEccCCCCHHHHHhhhc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcc
Confidence               47999999999999999987542 3458999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-H
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-L  670 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~  670 (747)
                      ||.+...............     ......++..|+|||++..  ..++.++|||||||++|||++|+.||....... .
T Consensus       172 fg~~~~~~~~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~  246 (389)
T 3gni_B          172 LRSNLSMISHGQRQRVVHD-----FPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQML  246 (389)
T ss_dssp             GGGCEECEETTEECSCBCC-----CCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHH
T ss_pred             cccceeecccccccccccc-----ccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence            9998654332211110000     0011245667899999877  578999999999999999999999987533221 1


Q ss_pred             HHHHhccCcC-----------------------Ccccccc---c------cccCCCCHHHHHHHHHHHhHccCCCCCCCC
Q 044236          671 NEMASFGSQD-----------------------GRRRIVD---P------VVLTTCSQESLSIVVSITNKCICPEPSSRP  718 (747)
Q Consensus       671 ~~~~~~~~~~-----------------------~~~~~~d---~------~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  718 (747)
                      ..........                       .......   +      ......+......+.+++.+||+.||++||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  326 (389)
T 3gni_B          247 LEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARP  326 (389)
T ss_dssp             HHC--------------------------------------------------------CCHHHHHHHHHHTCSCTTTSC
T ss_pred             HHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCC
Confidence            1110000000                       0000000   0      000011222345589999999999999999


Q ss_pred             CHHHHHHH
Q 044236          719 SFEDVLWN  726 (747)
Q Consensus       719 s~~evl~~  726 (747)
                      |+.|++++
T Consensus       327 ta~ell~h  334 (389)
T 3gni_B          327 SASTLLNH  334 (389)
T ss_dssp             CHHHHTTS
T ss_pred             CHHHHhcC
Confidence            99999864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.1e-39  Score=339.27  Aligned_cols=260  Identities=17%  Similarity=0.180  Sum_probs=194.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||+++...  ....+.+.+|+.++++++||||+++++++...        
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------   73 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD--------   73 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEET--------
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeC--------
Confidence            5788899999999999999995 568999999997533  33346788999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++ ++.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        74 ~~~~lv~e~~~~-~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~  147 (292)
T 3o0g_A           74 KKLTLVFEFCDQ-DLKKYFDSC--NGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGL  147 (292)
T ss_dssp             TEEEEEEECCSE-EHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CEEEEEEecCCC-CHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeeccc
Confidence            478999999976 666655443  3469999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC-CCcCCceeehhHHHHHHhhCCCCC-CCCh-hhhHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR-TKLEDDVYNFGFILLESLVGPIVT-GKGE-AFLLNEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~s~k~DVwSfGvvl~Elltg~~p~-~~~~-~~~~~~~  673 (747)
                      ++.........            ....++..|+|||++.... ++.++|||||||++|||++|..|+ .... ...+..+
T Consensus       148 ~~~~~~~~~~~------------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i  215 (292)
T 3o0g_A          148 ARAFGIPVRCY------------SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRI  215 (292)
T ss_dssp             CEECCSCCSCC------------CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHH
T ss_pred             ceecCCccccc------------cCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHH
Confidence            97653221110            0123456788999887655 799999999999999999986664 3322 2223332


Q ss_pred             HhccCcCC------cccccc---------ccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDG------RRRIVD---------PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~------~~~~~d---------~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ........      .....+         ........+.....+.+++.+||+.||++|||+.|+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          216 FRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             HHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence            22111100      000000         00001112233455889999999999999999999986

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=2.5e-39  Score=359.32  Aligned_cols=248  Identities=21%  Similarity=0.306  Sum_probs=200.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||++....   ......+.+|+.+++.++||||+++++++...      
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~------   88 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTP------   88 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECS------
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC------
Confidence            36788999999999999999995 479999999997432   23456789999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++..   ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        89 --~~~~lv~E~~~gg~L~~~l~~---~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DF  160 (476)
T 2y94_A           89 --SDIFMVMEYVSGGELFDYICK---NGRLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADF  160 (476)
T ss_dssp             --SEEEEEEECCSSEEHHHHTTS---SSSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCC
T ss_pred             --CEEEEEEeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEec
Confidence              478999999999999999975   3459999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      |+++........             ...++++.|+|||++....+ +.++|||||||++|||++|+.||.......+...
T Consensus       161 G~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~  227 (476)
T 2y94_A          161 GLSNMMSDGEFL-------------RTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKK  227 (476)
T ss_dssp             SSCEECCTTCCB-------------CCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHH
T ss_pred             cchhhccccccc-------------cccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHH
Confidence            999765432111             11356778999999887665 6899999999999999999999976543322221


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....         ...+..++    ..+.+++.+||+.||.+|||+.||++.
T Consensus       228 i~~~~---------~~~p~~~s----~~~~~Li~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          228 ICDGI---------FYTPQYLN----PSVISLLKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             HHTTC---------CCCCTTCC----HHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             HhcCC---------cCCCccCC----HHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence            11110         00111223    348899999999999999999999874

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.6e-39  Score=341.09  Aligned_cols=265  Identities=12%  Similarity=0.054  Sum_probs=205.3

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||.||+|+ ..+|+.||||++....  ..+.+.+|+.+++++ +|+||+++++++...        .
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~--------~   79 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEG--------L   79 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEET--------T
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCC--------c
Confidence            568899999999999999999 4679999999986433  234578899999999 799999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc-----EEEe
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI-----AKLS  592 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-----~kl~  592 (747)
                      ..++||||+ +|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.     +||+
T Consensus        80 ~~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~  153 (298)
T 1csn_A           80 HNVLVIDLL-GPSLEDLLDLC--GRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVV  153 (298)
T ss_dssp             EEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             eeEEEEEec-CCCHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEE
Confidence            789999999 99999999764  3459999999999999999999999   89999999999999987776     9999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh----h
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA----F  668 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~----~  668 (747)
                      |||+++............     ........++..|+|||.+....++.++|||||||++|||++|+.||.....    .
T Consensus       154 Dfg~~~~~~~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~  228 (298)
T 1csn_A          154 DFGMVKFYRDPVTKQHIP-----YREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ  228 (298)
T ss_dssp             CCTTCEESBCTTTCCBCC-----CCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHH
T ss_pred             ECcccccccccccccccc-----ccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHH
Confidence            999998765432211100     0011224567789999999888899999999999999999999999875321    1


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ....+.......     ..+.....++    ..+.+++.+||+.||++|||+.+|++.|+.+....
T Consensus       229 ~~~~~~~~~~~~-----~~~~~~~~~~----~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~  285 (298)
T 1csn_A          229 KYERIGEKKQST-----PLRELCAGFP----EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL  285 (298)
T ss_dssp             HHHHHHHHHHHS-----CHHHHTTTSC----HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhccCc-----cHHHHHhhCc----HHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhc
Confidence            111111110000     0011112233    34889999999999999999999999999886643

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=348.95  Aligned_cols=252  Identities=18%  Similarity=0.237  Sum_probs=192.4

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCC--CCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQH--PHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H--~nIv~l~g~~~~~~~~~~~~  515 (747)
                      +.|++.+.||+|+||.||+|...+++.||||++...  .....+.+.+|+++|++++|  |||+++++++...       
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~-------   81 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-------   81 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-------
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeC-------
Confidence            468889999999999999999888999999998743  33445788999999999987  9999999998863       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++|||| .+|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++ ++.+||+|||
T Consensus        82 -~~~~lv~e~-~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG  152 (343)
T 3dbq_A           82 -QYIYMVMEC-GNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFG  152 (343)
T ss_dssp             -SEEEEEECC-CSEEHHHHHHHS---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCS
T ss_pred             -CEEEEEEeC-CCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeecc
Confidence             489999994 578999999863   468999999999999999999999   7899999999999997 6789999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----------cCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----------QRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----------~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      +++..........          .....++..|+|||++..           ..++.++|||||||++|||++|+.||..
T Consensus       153 ~a~~~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  222 (343)
T 3dbq_A          153 IANQMQPDTTSVV----------KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ  222 (343)
T ss_dssp             SSCCC----------------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             cccccCccccccc----------CCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchh
Confidence            9976643321110          011346778899998754           6789999999999999999999999975


Q ss_pred             ChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          665 GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .... ...+....         ++.....++......+.+++.+||+.||.+|||+.|++++-
T Consensus       223 ~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp  275 (343)
T 3dbq_A          223 IINQ-ISKLHAII---------DPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP  275 (343)
T ss_dssp             CCSH-HHHHHHHH---------CTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             hhhH-HHHHHHHh---------cCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCc
Confidence            3221 11111111         11111111122223478999999999999999999998653

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.7e-39  Score=340.24  Aligned_cols=259  Identities=15%  Similarity=0.177  Sum_probs=198.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++....   ....+.+.+|+.++++++||||+++++++...      
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~------  106 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEID------  106 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET------
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeC------
Confidence            47899999999999999999995 478999999997542   22346788999999999999999999999773      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++++|.+++...   ..+++..+..++.|+++||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus       107 --~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Df  178 (309)
T 2h34_A          107 --GQLYVDMRLINGVDLAAMLRRQ---GPLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVDF  178 (309)
T ss_dssp             --TEEEEEEECCCCEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSC
T ss_pred             --CeEEEEEEecCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEecC
Confidence              4789999999999999999763   458999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++..........           ....++..|++||.+....++.++|||||||++|||++|+.||.......+....
T Consensus       179 g~~~~~~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  247 (309)
T 2h34_A          179 GIASATTDEKLTQL-----------GNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHI  247 (309)
T ss_dssp             CC---------------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHH
T ss_pred             ccCccccccccccc-----------cccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHh
Confidence            99876543221100           1123566788999988888999999999999999999999999876554333322


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-CHHHHHHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-SFEDVLWNLQYAAQ  732 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~evl~~L~~~~~  732 (747)
                      ......      .......++.    .+.+++.+||+.||++|| +++++++.|+.+..
T Consensus       248 ~~~~~~------~~~~~~~~~~----~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~  296 (309)
T 2h34_A          248 NQAIPR------PSTVRPGIPV----AFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA  296 (309)
T ss_dssp             HSCCCC------GGGTSTTCCT----HHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred             ccCCCC------ccccCCCCCH----HHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence            211100      0111122333    488899999999999999 99999999987644

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=2.8e-39  Score=372.36  Aligned_cols=251  Identities=20%  Similarity=0.271  Sum_probs=198.4

Q ss_pred             ccccCCCCeeEEEEEe---CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRL---ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      +.||+|+||.||+|.+   ..++.||||+++...  ....+.+.+|+++|++++|||||+++++|..         ...+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~---------~~~~  445 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA---------ESWM  445 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES---------SSEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---------CCEE
Confidence            4799999999999964   346889999997533  3346789999999999999999999999864         2478


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +|||||++|+|.++++.   ...+++..+..|+.||+.||+|||+   .+||||||||+|||++.++.+||+|||+++..
T Consensus       446 lv~E~~~~g~L~~~l~~---~~~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~  519 (635)
T 4fl3_A          446 LVMEMAELGPLNKYLQQ---NRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKAL  519 (635)
T ss_dssp             EEEECCTTEEHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHT
T ss_pred             EEEEccCCCCHHHHHhh---CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCcccc
Confidence            99999999999999975   3458999999999999999999999   88999999999999999999999999999866


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      ..........         ....++..|+|||++....++.++|||||||++|||+| |+.||.......+.........
T Consensus       520 ~~~~~~~~~~---------~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~  590 (635)
T 4fl3_A          520 RADENYYKAQ---------THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGER  590 (635)
T ss_dssp             TC----------------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCC
T ss_pred             ccCccccccc---------cCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC
Confidence            4332211100         01123456889999988899999999999999999998 9999976554433333222111


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                              ......++    ..+.+++.+||+.||++|||+.+|+++|+.+..
T Consensus       591 --------~~~p~~~~----~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~  631 (635)
T 4fl3_A          591 --------MGCPAGCP----REMYDLMNLCWTYDVENRPGFAAVELRLRNYYY  631 (635)
T ss_dssp             --------CCCCTTCC----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             --------CCCCCCCC----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence                    11112333    448899999999999999999999999997754

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=2e-39  Score=343.35  Aligned_cols=271  Identities=19%  Similarity=0.245  Sum_probs=209.3

Q ss_pred             HHHHHHHhhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeee
Q 044236          432 LEELKEATNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLG  503 (747)
Q Consensus       432 ~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g  503 (747)
                      ..+.....++|.+.+.||+|+||.||+|+.      .+++.||||+++... ....+.+.+|+.+++++ +||||+++++
T Consensus        19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~   98 (316)
T 2xir_A           19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   98 (316)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEE
Confidence            344444567899999999999999999973      346899999997543 33456789999999999 7999999999


Q ss_pred             eeeccCCCCCCCCceEEEEEeccCCCCcccccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044236          504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWSDRLAILIGVAKAVHFLHSSVISG  570 (747)
Q Consensus       504 ~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  570 (747)
                      +|...+       ...++||||+++|+|.+++.....             ...+++..+..++.|+++||.|||+   .+
T Consensus        99 ~~~~~~-------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~  168 (316)
T 2xir_A           99 ACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RK  168 (316)
T ss_dssp             EECCTT-------SCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             EEecCC-------CceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            987632       358999999999999999976422             1238899999999999999999999   89


Q ss_pred             cccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhH
Q 044236          571 SFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF  650 (747)
Q Consensus       571 ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGv  650 (747)
                      |+||||||+||+++.++.+||+|||+++..........          .....++..|++||.+....++.++|||||||
T Consensus       169 i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~  238 (316)
T 2xir_A          169 CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVR----------KGDARLPLKWMAPETIFDRVYTIQSDVWSFGV  238 (316)
T ss_dssp             CCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEE----------ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred             cccccCccceEEECCCCCEEECCCccccccccCcccee----------ccCCCcceeecCchhhccccccchhHHHHHHH
Confidence            99999999999999999999999999976543221111          11134566789999998889999999999999


Q ss_pred             HHHHHhh-CCCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          651 ILLESLV-GPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       651 vl~Ellt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ++|||+| |..|+...... ...........        ......+++    .+.+++.+||+.||.+|||+.|+++.|+
T Consensus       239 il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~ell~~L~  306 (316)
T 2xir_A          239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTR--------MRAPDYTTP----EMYQTMLDCWHGEPSQRPTFSELVEHLG  306 (316)
T ss_dssp             HHHHHHTTSCCSSTTCCCSHHHHHHHHHTCC--------CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcccchhHHHHHHhccCcc--------CCCCCCCCH----HHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence            9999998 89888654321 11111111100        111122233    4889999999999999999999999999


Q ss_pred             HHHHHh
Q 044236          729 YAAQVQ  734 (747)
Q Consensus       729 ~~~~~~  734 (747)
                      .+.+..
T Consensus       307 ~~~~~~  312 (316)
T 2xir_A          307 NLLQAN  312 (316)
T ss_dssp             HHHHHH
T ss_pred             HHHhhh
Confidence            887643

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.8e-39  Score=345.28  Aligned_cols=247  Identities=18%  Similarity=0.272  Sum_probs=189.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe----CCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||.||+|+.    .+|+.||||+++...    ......+.+|+++|++++|||||++++++...  
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--   93 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTG--   93 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECS--
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcC--
Confidence            36789999999999999999985    478999999997532    23345678899999999999999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  590 (747)
                            ...++||||+++|+|.+++...   ..+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus        94 ------~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~k  161 (327)
T 3a62_A           94 ------GKLYLILEYLSGGELFMQLERE---GIFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVK  161 (327)
T ss_dssp             ------SCEEEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEE
T ss_pred             ------CEEEEEEeCCCCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEE
Confidence                  4789999999999999998753   358899999999999999999999   7999999999999999999999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-  669 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-  669 (747)
                      |+|||+++.........            ...+++..|+|||++....++.++|||||||++|||++|+.||....... 
T Consensus       162 l~Dfg~~~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~  229 (327)
T 3a62_A          162 LTDFGLCKESIHDGTVT------------HTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKT  229 (327)
T ss_dssp             ECCCSCC----------------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             EEeCCcccccccCCccc------------cccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHH
Confidence            99999987543221110            01245678999999988889999999999999999999999997554332 


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      ...+....          ..+...++    ..+.+++.+||+.||.+||     ++.|+++
T Consensus       230 ~~~i~~~~----------~~~p~~~~----~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          230 IDKILKCK----------LNLPPYLT----QEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             HHHHHHTC----------CCCCTTSC----HHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             HHHHHhCC----------CCCCCCCC----HHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence            22222210          11112223    3488999999999999999     7778875

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.3e-39  Score=350.99  Aligned_cols=251  Identities=19%  Similarity=0.186  Sum_probs=189.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++..... ..+.+.+|+.++++++|||||++++++...        .
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~--------~   89 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTP--------T   89 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECS--------S
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeC--------C
Confidence            46799999999999999999995 4799999999975432 236688999999999999999999999863        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc--EEEeccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI--AKLSDYG  595 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--~kl~DFG  595 (747)
                      ..++||||+++|+|.+++...   ..+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.  +||+|||
T Consensus        90 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg  163 (361)
T 3uc3_A           90 HLAIIMEYASGGELYERICNA---GRFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFG  163 (361)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCC
T ss_pred             EEEEEEEeCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecC
Confidence            789999999999999998753   358999999999999999999999   88999999999999987765  9999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcC-CceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLE-DDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k-~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      +++........             ....++..|+|||++....++.+ +|||||||++|||++|+.||..... ......
T Consensus       164 ~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~  230 (361)
T 3uc3_A          164 YSKSSVLHSQP-------------KSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKT  230 (361)
T ss_dssp             CC----------------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHH
T ss_pred             ccccccccCCC-------------CCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHH
Confidence            98643221110             11346778999999887777655 8999999999999999999875322 111111


Q ss_pred             -HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 -ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 -~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                       .......  ....+   ...++    ..+.+++.+||+.||.+|||+.|++++
T Consensus       231 ~~~~~~~~--~~~~~---~~~~s----~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          231 IQRILSVK--YSIPD---DIRIS----PECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             HHHHHTTC--CCCCT---TSCCC----HHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHHhcCC--CCCCC---cCCCC----HHHHHHHHHHccCChhHCcCHHHHHhC
Confidence             1111000  00000   01123    347899999999999999999999875

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=3.9e-39  Score=358.40  Aligned_cols=264  Identities=17%  Similarity=0.184  Sum_probs=196.5

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+ ..+|+.||||++...  .....+.+.+|+.+|+.++|||||++++++...+.  ...
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~--~~~  138 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKT--LEE  138 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCS--TTT
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCc--ccc
Confidence            4679999999999999999998 456999999999743  33445778899999999999999999999876431  112


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++|||||++ ++.+.+..     .+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       139 ~~~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~kl~DFG  209 (464)
T 3ttj_A          139 FQDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG  209 (464)
T ss_dssp             CCEEEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             CCeEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEEEEEEE
Confidence            3578999999976 46666643     38899999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~  674 (747)
                      +|+.......             ....+++..|+|||++....|+.++|||||||++|||++|+.||...+ .+.+..+.
T Consensus       210 ~a~~~~~~~~-------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~  276 (464)
T 3ttj_A          210 LARTAGTSFM-------------MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVI  276 (464)
T ss_dssp             CC-----CCC-------------C----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             eeeecCCCcc-------------cCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            9976543211             111356778999999999999999999999999999999999987543 22333222


Q ss_pred             hccCcCC--------------------cc-----ccccccccCC---CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDG--------------------RR-----RIVDPVVLTT---CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~--------------------~~-----~~~d~~~~~~---~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......                    ..     ..........   ........+.+|+.+||+.||++|||+.|++++
T Consensus       277 ~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          277 EQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             HHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            2111000                    00     0000000000   011225678999999999999999999999863

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=6.8e-39  Score=338.07  Aligned_cols=268  Identities=20%  Similarity=0.229  Sum_probs=197.4

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-----hhcHHHHHHHHHHHhcCC---CCCcceeeeeeecc
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-----KYSIQNLKVRLDFLSKLQ---HPHLVSLLGHCIES  508 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~E~~~l~~l~---H~nIv~l~g~~~~~  508 (747)
                      ..++|++.+.||+|+||.||+|+. .+|+.||||+++...     ......+.+|++++++++   ||||++++++|...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            357899999999999999999994 679999999987432     112345677888777664   99999999999764


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                      ..   ......++||||+. |+|.+++.... ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.
T Consensus        87 ~~---~~~~~~~lv~e~~~-~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~  158 (308)
T 3g33_A           87 RT---DREIKVTLVFEHVD-QDLRTYLDKAP-PPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGT  158 (308)
T ss_dssp             CS---SSEEEEEEEEECCC-CBHHHHHHTCC-TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTSC
T ss_pred             CC---CCceeEEEEehhhh-cCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCC
Confidence            31   11236899999997 59999987642 3349999999999999999999999   78999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-  667 (747)
                      +||+|||+++........             ....++..|+|||++....++.++|||||||++|||++|+.||..... 
T Consensus       159 ~kl~Dfg~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~  225 (308)
T 3g33_A          159 VKLADFGLARIYSYQMAL-------------TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA  225 (308)
T ss_dssp             EEECSCSCTTTSTTCCCS-------------GGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHH
T ss_pred             EEEeeCccccccCCCccc-------------CCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999765322111             112456789999999888999999999999999999999999875443 


Q ss_pred             hhHHHHHhccCcCCccc----------ccccccc---CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRR----------IVDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~----------~~d~~~~---~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....+...........          ...+...   ....++....+.+++.+||+.||++|||+.|++++
T Consensus       226 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          226 DQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             HHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence            33333322111100000          0000000   00011233458899999999999999999999864

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=6.4e-40  Score=348.19  Aligned_cols=262  Identities=16%  Similarity=0.191  Sum_probs=205.3

Q ss_pred             HHHhhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 044236          436 KEATNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIES  508 (747)
Q Consensus       436 ~~~~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~  508 (747)
                      ....++|.+.+.||+|+||.||+|+..      +++.||||.+.... ......+.+|+.++++++||||+++++++...
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~  100 (322)
T 1p4o_A           21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG  100 (322)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS
T ss_pred             cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccC
Confidence            345678999999999999999999753      37889999997533 33456788999999999999999999998763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCC-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                              ...++||||+++|+|.+++....       ....+++..+..++.|++.||+|||+   .+|+||||||+||
T Consensus       101 --------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NI  169 (322)
T 1p4o_A          101 --------QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNC  169 (322)
T ss_dssp             --------SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGE
T ss_pred             --------CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccCCCccceE
Confidence                    36799999999999999987421       12457899999999999999999999   7899999999999


Q ss_pred             eecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCC
Q 044236          582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPI  660 (747)
Q Consensus       582 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~  660 (747)
                      +++.++.+||+|||+++...........          ....++..|++||.+....++.++|||||||++|||+| |+.
T Consensus       170 li~~~~~~kl~Dfg~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~  239 (322)
T 1p4o_A          170 MVAEDFTVKIGDFGMTRDIYETDYYRKG----------GKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ  239 (322)
T ss_dssp             EECTTCCEEECCTTCCCGGGGGGCEEGG----------GSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCC
T ss_pred             EEcCCCeEEECcCccccccccccccccc----------cCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCC
Confidence            9999999999999999765433211110          01134556889999888889999999999999999999 788


Q ss_pred             CCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      |+................   .     +.....++    ..+.+++.+||+.||.+|||+.|+++.|+..
T Consensus       240 p~~~~~~~~~~~~~~~~~---~-----~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~  297 (322)
T 1p4o_A          240 PYQGLSNEQVLRFVMEGG---L-----LDKPDNCP----DMLFELMRMCWQYNPKMRPSFLEIISSIKEE  297 (322)
T ss_dssp             TTTTSCHHHHHHHHHTTC---C-----CCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred             ccccCCHHHHHHHHHcCC---c-----CCCCCCCC----HHHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence            887654433322221110   0     01112233    3488999999999999999999999999765

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.9e-39  Score=346.66  Aligned_cols=263  Identities=17%  Similarity=0.208  Sum_probs=197.6

Q ss_pred             HHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-----chhcHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 044236          435 LKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-----KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIES  508 (747)
Q Consensus       435 l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~  508 (747)
                      +....++|++.+.||+|+||.||+|+. .+++.||||++...     .....+.+.+|++++++++|||||+++++|.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            345567899999999999999999985 56899999998743     234557889999999999999999999999763


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCC-------------------------------------CCCCCCHHHHHH
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-------------------------------------PENVLKWSDRLA  551 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------------------------------~~~~l~~~~~~~  551 (747)
                              ...++||||+++|+|.+++....                                     ....+++..+..
T Consensus       101 --------~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (345)
T 3hko_A          101 --------QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISN  172 (345)
T ss_dssp             --------SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHH
T ss_pred             --------CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence                    47999999999999999885210                                     011245677888


Q ss_pred             HHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC--cEEEecccccccccccchhcccCCCCCcccccceeeecCCcc
Q 044236          552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR--IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAEN  629 (747)
Q Consensus       552 i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~--~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (747)
                      ++.|++.||+|||+   .+|+||||||+|||++.++  .+||+|||+++.........        .+......++..|+
T Consensus       173 i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~--------~~~~~~~~gt~~y~  241 (345)
T 3hko_A          173 IMRQIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE--------YYGMTTKAGTPYFV  241 (345)
T ss_dssp             HHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC----------------CCCGGGC
T ss_pred             HHHHHHHHHHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccc--------cccccccCCCcccc
Confidence            99999999999999   7899999999999998766  89999999997654321110        01111234667789


Q ss_pred             eeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHH
Q 044236          630 VVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT  706 (747)
Q Consensus       630 ~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~  706 (747)
                      |||.+..  ..++.++|||||||++|||++|+.||...... ....+.....     ....+ ....+    ...+.+++
T Consensus       242 aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~----~~~~~~li  311 (345)
T 3hko_A          242 APEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKL-----CFENP-NYNVL----SPLARDLL  311 (345)
T ss_dssp             CHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC-----CTTSG-GGGGS----CHHHHHHH
T ss_pred             CchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhccc-----ccCCc-ccccC----CHHHHHHH
Confidence            9998864  67899999999999999999999999754433 2222222110     00111 11112    33488999


Q ss_pred             hHccCCCCCCCCCHHHHHHH
Q 044236          707 NKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       707 ~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+||+.||.+|||+.|+++.
T Consensus       312 ~~~l~~~p~~Rps~~~~l~h  331 (345)
T 3hko_A          312 SNLLNRNVDERFDAMRALQH  331 (345)
T ss_dssp             HHHSCSCTTTSCCHHHHHHS
T ss_pred             HHHcCCChhHCCCHHHHhcC
Confidence            99999999999999999874

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.7e-39  Score=335.05  Aligned_cols=262  Identities=18%  Similarity=0.294  Sum_probs=202.0

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCC---cEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENG---TYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g---~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .|...+.||+|+||.||+|+. .++   ..||||.+.... ....+.+.+|+.++++++||||+++++++...+      
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~------   95 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPE------   95 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS------
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCC------
Confidence            355568899999999999984 333   379999987533 345578899999999999999999999987632      


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+.+|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        96 -~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg  169 (298)
T 3pls_A           96 -GLPHVLLPYMCHGDLLQFIRSP--QRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFG  169 (298)
T ss_dssp             -SCCEEEECCCTTCBHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTT
T ss_pred             -CCcEEEEecccCCCHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCC
Confidence             3458999999999999999763  4568999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~~~  674 (747)
                      +++.............        ....++..|++||.+....++.++|||||||++|||++| .+|+............
T Consensus       170 ~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~  241 (298)
T 3pls_A          170 LARDILDREYYSVQQH--------RHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFL  241 (298)
T ss_dssp             SSCTTTTGGGGCSCCS--------SCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHH
T ss_pred             CcccccCCcccccccC--------cCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHh
Confidence            9976543322111100        011334568889998888899999999999999999996 5555544443333322


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .....        ......++    ..+.+++.+||+.||.+|||+.|++++|+.+....
T Consensus       242 ~~~~~--------~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l  289 (298)
T 3pls_A          242 AQGRR--------LPQPEYCP----DSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL  289 (298)
T ss_dssp             HTTCC--------CCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             hcCCC--------CCCCccch----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence            22111        11112223    34889999999999999999999999999886644

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=3.5e-39  Score=343.27  Aligned_cols=266  Identities=20%  Similarity=0.296  Sum_probs=203.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|.+.+.||+|+||.||+|+.      .+++.||||++... .......+.+|+.++++++||||+++++++...   
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---  105 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS---  105 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC---
Confidence            46799999999999999999984      34779999999743 334556789999999999999999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC--
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCP----ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE--  585 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--  585 (747)
                           ...++||||+++|+|.+++.....    ...+++..++.++.|++.||.|||+   .+|+||||||+|||++.  
T Consensus       106 -----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~  177 (327)
T 2yfx_A          106 -----LPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPG  177 (327)
T ss_dssp             -----SSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSS
T ss_pred             -----CCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCC
Confidence                 367999999999999999976421    2458999999999999999999999   78999999999999984  


Q ss_pred             -CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCC
Q 044236          586 -HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTG  663 (747)
Q Consensus       586 -~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~  663 (747)
                       +..+||+|||+++...........          ....++..|++||.+....++.++|||||||++|||+| |+.|+.
T Consensus       178 ~~~~~kl~Dfg~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  247 (327)
T 2yfx_A          178 PGRVAKIGDFGMARDIYRASYYRKG----------GCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP  247 (327)
T ss_dssp             TTCCEEECCCHHHHHHHC------C----------CGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CcceEEECccccccccccccccccC----------CCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence             456999999998754332211100          00123456889999888889999999999999999998 888987


Q ss_pred             CChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 044236          664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATA  737 (747)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~~  737 (747)
                      ................        +.....++.    .+.+++.+||+.||.+|||+.|+++.|+.+.......
T Consensus       248 ~~~~~~~~~~~~~~~~--------~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~~~~  309 (327)
T 2yfx_A          248 SKSNQEVLEFVTSGGR--------MDPPKNCPG----PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVI  309 (327)
T ss_dssp             TCCHHHHHHHHHTTCC--------CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHHHH
T ss_pred             CcCHHHHHHHHhcCCC--------CCCCCCCCH----HHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCHHHh
Confidence            6544333222221110        111122333    4889999999999999999999999999887755433

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=342.49  Aligned_cols=244  Identities=22%  Similarity=0.231  Sum_probs=186.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc--hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||+||+|+.. +|+.||||++....  ......+..|+..+.++ +|||||+++++|.+.       
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~-------  129 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG-------  129 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-------
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeC-------
Confidence            57999999999999999999964 79999999986432  23334455666666555 899999999999873       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+ +|+|.+++...  ...++|..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       130 -~~~~lv~e~~-~~~L~~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG  202 (311)
T 3p1a_A          130 -GILYLQTELC-GPSLQQHCEAW--GASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFG  202 (311)
T ss_dssp             -TEEEEEEECC-CCBHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCT
T ss_pred             -CEEEEEEecc-CCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccce
Confidence             4799999999 67999888764  3469999999999999999999999   789999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++.........             ...++..|+|||++.+ .++.++|||||||++|||++|..|+....  ....+..
T Consensus       203 ~a~~~~~~~~~~-------------~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~--~~~~~~~  266 (311)
T 3p1a_A          203 LLVELGTAGAGE-------------VQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE--GWQQLRQ  266 (311)
T ss_dssp             TCEECC-------------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH--HHHHHTT
T ss_pred             eeeecccCCCCc-------------ccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHhc
Confidence            987654322111             1235667889998765 78999999999999999999955443221  1111111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                              ....+.....++    ..+.+++.+||+.||++|||+.|+++
T Consensus       267 --------~~~~~~~~~~~~----~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          267 --------GYLPPEFTAGLS----SELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             --------TCCCHHHHTTSC----HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             --------cCCCcccccCCC----HHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                    011111222233    34889999999999999999999985

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=5.8e-39  Score=340.70  Aligned_cols=250  Identities=19%  Similarity=0.241  Sum_probs=200.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch------hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||.++....      ...+.+.+|+.++++++||||+++++++...   
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---   87 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENR---   87 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS---
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecC---
Confidence            45688999999999999999995 4689999999975332      1367899999999999999999999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC----
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR----  587 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----  587 (747)
                           ...++||||+++|+|.+++..   ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++    
T Consensus        88 -----~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~  156 (321)
T 2a2a_A           88 -----TDVVLILELVSGGELFDFLAQ---KESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIP  156 (321)
T ss_dssp             -----SEEEEEECCCCSCBHHHHHHT---CSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSC
T ss_pred             -----CEEEEEEEcCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcC
Confidence                 478999999999999999975   3468999999999999999999999   8999999999999999887    


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      .+||+|||+++........             ....++..|++||.+....++.++|||||||++|||++|+.||.....
T Consensus       157 ~~kl~Dfg~~~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  223 (321)
T 2a2a_A          157 HIKLIDFGLAHEIEDGVEF-------------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK  223 (321)
T ss_dssp             CEEECCCTTCEECCTTCCC-------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH
T ss_pred             CEEEccCccceecCccccc-------------cccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH
Confidence            7999999999765432111             112356678999999888899999999999999999999999875443


Q ss_pred             hh-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          668 FL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       668 ~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .. ...+.... .     ..++......+    ..+.+++.+||+.||++|||+.|+++
T Consensus       224 ~~~~~~i~~~~-~-----~~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          224 QETLANITSVS-Y-----DFDEEFFSHTS----ELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             HHHHHHHHTTC-C-----CCCHHHHTTCC----HHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHhcc-c-----ccChhhhcccC----HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            22 22222110 0     01111112233    34889999999999999999999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=7.1e-39  Score=338.25  Aligned_cols=264  Identities=16%  Similarity=0.252  Sum_probs=196.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++..   .......+.+|+.++++++||||+++++++...      
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~------  104 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED------  104 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET------
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC------
Confidence            35789999999999999999994 67999999999742   234456788999999999999999999999873      


Q ss_pred             CCceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ...++||||+++|+|.+++... .....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|
T Consensus       105 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~D  179 (310)
T 2wqm_A          105 --NELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGD  179 (310)
T ss_dssp             --TEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECC
T ss_pred             --CcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEEe
Confidence              4789999999999999988642 124568999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++.........            ....++..|++||.+....++.++|||||||++|||++|+.||...........
T Consensus       180 fg~~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~  247 (310)
T 2wqm_A          180 LGLGRFFSSKTTAA------------HSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLC  247 (310)
T ss_dssp             C------------------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHH
T ss_pred             ccceeeecCCCccc------------cccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHH
Confidence            99987654321110            112456678899998888899999999999999999999998864432211111


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ...... ..    .+.....++.    .+.+++.+||+.||.+|||+.+|++.|+.+....
T Consensus       248 ~~~~~~-~~----~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~  299 (310)
T 2wqm_A          248 KKIEQC-DY----PPLPSDHYSE----ELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT  299 (310)
T ss_dssp             HHHHTT-CS----CCCCTTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHhhcc-cC----CCCcccccCH----HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence            111100 00    0101122333    4889999999999999999999999998775543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.2e-39  Score=361.88  Aligned_cols=249  Identities=20%  Similarity=0.253  Sum_probs=191.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++..   .......+.+|+.++++++||||++++++|...      
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------  220 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTH------  220 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEET------
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeC------
Confidence            46799999999999999999994 57999999999743   233446678899999999999999999999873      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..++|||||++|+|.+++...   ..+++..+..++.|+++||+|||+.  .+|+||||||+|||++.++.+||+||
T Consensus       221 --~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~--~giiHrDlkp~NIll~~~~~~kl~DF  293 (446)
T 4ejn_A          221 --DRLCFVMEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDF  293 (446)
T ss_dssp             --TEEEEEECCCSSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCCCCGGGEEECSSSCEEECCC
T ss_pred             --CEEEEEEeeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHhhc--CCEEECCCCHHHEEECCCCCEEEccC
Confidence              4789999999999999998753   4589999999999999999999962  57999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.........            ...+++..|+|||++....++.++|||||||++|||++|+.||............
T Consensus       294 G~a~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i  361 (446)
T 4ejn_A          294 GLCKEGIKDGATM------------KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELI  361 (446)
T ss_dssp             CCCCTTCC-----------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             CCceeccCCCccc------------ccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHH
Confidence            9997533221110            1135677899999998899999999999999999999999999765544333222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      ....         ...+..++    ..+.+++.+||+.||.+||     ++.|+++
T Consensus       362 ~~~~---------~~~p~~~~----~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          362 LMEE---------IRFPRTLG----PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             HHCC---------CCCCTTSC----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             HhCC---------CCCCccCC----HHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            2111         11112233    3488999999999999999     9999986

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.6e-39  Score=335.93  Aligned_cols=255  Identities=20%  Similarity=0.259  Sum_probs=201.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|.. .+|+.||||++....  ....+.+.+|+.++++++||||+++++++...       
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-------   77 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE-------   77 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-------
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcC-------
Confidence            46799999999999999999985 568999999997533  33456788999999999999999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc---EEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI---AKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---~kl~  592 (747)
                       ...++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.   +||+
T Consensus        78 -~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~  150 (284)
T 3kk8_A           78 -SFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLA  150 (284)
T ss_dssp             -SEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEEC
T ss_pred             -CEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEe
Confidence             4789999999999999888753   458999999999999999999999   89999999999999986655   9999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+++........             ....++..|++||.+....++.++|||||||++|||++|+.||..........
T Consensus       151 Dfg~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~  217 (284)
T 3kk8_A          151 DFGLAIEVNDSEAW-------------HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA  217 (284)
T ss_dssp             CCTTCEECCSSCBC-------------CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             eceeeEEcccCccc-------------cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHH
Confidence            99999655432211             01235667889999988889999999999999999999999987654433322


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY  729 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  729 (747)
                      ........    ...+ ....+++    .+.+++.+||+.||++|||+.|+++.--.
T Consensus       218 ~~~~~~~~----~~~~-~~~~~~~----~~~~li~~~l~~dp~~Rps~~~~l~h~~~  265 (284)
T 3kk8_A          218 QIKAGAYD----YPSP-EWDTVTP----EAKSLIDSMLTVNPKKRITADQALKVPWI  265 (284)
T ss_dssp             HHHHTCCC----CCTT-TTTTSCH----HHHHHHHHHSCSSTTTSCCHHHHTTSHHH
T ss_pred             HHHhcccc----CCch-hhcccCH----HHHHHHHHHcccChhhCCCHHHHhcCccc
Confidence            22211111    0111 1122333    48899999999999999999999986443

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=9e-40  Score=348.79  Aligned_cols=263  Identities=23%  Similarity=0.274  Sum_probs=204.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CC-----cEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NG-----TYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g-----~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|.+.+.||+|+||.||+|+.. ++     ..||||.++... ....+.+.+|+.+++++ +||||++++++|...  
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~--  122 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG--  122 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC--
Confidence            467889999999999999999853 23     489999997543 33456789999999999 899999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCC
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENC-----------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN  579 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~  579 (747)
                            ...++||||+++|+|.+++....           ....+++..+..++.|++.||+|||+   .+|+||||||+
T Consensus       123 ------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~  193 (333)
T 2i1m_A          123 ------GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAAR  193 (333)
T ss_dssp             ------SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             ------CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCcccc
Confidence                  36899999999999999986431           12358999999999999999999999   89999999999


Q ss_pred             ceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-C
Q 044236          580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-G  658 (747)
Q Consensus       580 NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g  658 (747)
                      |||++.++.+||+|||+++...........          ....++..|++||.+....++.++|||||||++|||+| |
T Consensus       194 NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g  263 (333)
T 2i1m_A          194 NVLLTNGHVAKIGDFGLARDIMNDSNYIVK----------GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLG  263 (333)
T ss_dssp             GCEEEGGGEEEBCCCGGGCCGGGCTTSEEC----------SSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTS
T ss_pred             eEEECCCCeEEECccccccccccccceeec----------CCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999765432211110          01234557899999888889999999999999999999 8


Q ss_pred             CCCCCCChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          659 PIVTGKGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       659 ~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ..|+...... ..........        .+.....++    ..+.+++.+||+.||.+|||+.||++.|+.+....
T Consensus       264 ~~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~  328 (333)
T 2i1m_A          264 LNPYPGILVNSKFYKLVKDGY--------QMAQPAFAP----KNIYSIMQACWALEPTHRPTFQQICSFLQEQAQED  328 (333)
T ss_dssp             CCSSTTCCSSHHHHHHHHHTC--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcccchhHHHHHHHhcCC--------CCCCCCCCC----HHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhh
Confidence            8888653322 1222211111        011111223    34889999999999999999999999999876644

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=6.6e-39  Score=332.89  Aligned_cols=250  Identities=20%  Similarity=0.288  Sum_probs=182.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++....   ....+.+.+|+.++++++||||+++++++...      
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~------   83 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDS------   83 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECS------
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccC------
Confidence            46789999999999999999995 679999999997432   23347789999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..++||||+++|+|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        84 --~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~df  156 (278)
T 3cok_A           84 --NYVYLVLEMCHNGEMNRYLKNR--VKPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADF  156 (278)
T ss_dssp             --SEEEEEEECCTTEEHHHHHHTC--SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCC
T ss_pred             --CeEEEEEecCCCCcHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEee
Confidence              4789999999999999998754  3568999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.........            ....++..|++||.+....++.++|||||||++|||++|+.|+.........  .
T Consensus       157 g~~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--~  222 (278)
T 3cok_A          157 GLATQLKMPHEKH------------YTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL--N  222 (278)
T ss_dssp             TTCEECC----------------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC------
T ss_pred             cceeeccCCCCcc------------eeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH--H
Confidence            9997654221110            1124566789999998888999999999999999999999998754322111  0


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....       .+......++    ..+.+++.+||+.||++|||+.|+++.
T Consensus       223 ~~~~-------~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~h  263 (278)
T 3cok_A          223 KVVL-------ADYEMPSFLS----IEAKDLIHQLLRRNPADRLSLSSVLDH  263 (278)
T ss_dssp             -CCS-------SCCCCCTTSC----HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             HHhh-------cccCCccccC----HHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence            0000       0111112223    348899999999999999999999863

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=5.3e-39  Score=333.42  Aligned_cols=252  Identities=16%  Similarity=0.175  Sum_probs=200.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|.+.+.||+|+||.||+|+. .++..||+|++........+.+.+|++++++++||||++++++|...        .
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------~   79 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDN--------T   79 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--------S
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC--------C
Confidence            46788999999999999999995 45789999999866556678899999999999999999999999763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee---cCCCcEEEecc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL---DEHRIAKLSDY  594 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DF  594 (747)
                      ..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||++   +.++.+||+||
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Df  153 (277)
T 3f3z_A           80 DIYLVMELCTGGELFERVVHK---RVFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDF  153 (277)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred             eEEEEEeccCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEec
Confidence            789999999999999988753   458999999999999999999999   899999999999999   78899999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.........             ...++..|++||.+.. .++.++|||||||++|||++|+.||............
T Consensus       154 g~~~~~~~~~~~~-------------~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~  219 (277)
T 3f3z_A          154 GLAARFKPGKMMR-------------TKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKI  219 (277)
T ss_dssp             TTCEECCTTSCBC-------------CCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             ccceeccCccchh-------------ccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence            9997654322110             1235667889998754 4899999999999999999999998765433222211


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ......    . .......+    ...+.+++.+||+.||.+|||+.|+++.-
T Consensus       220 ~~~~~~----~-~~~~~~~~----~~~~~~li~~~l~~dp~~R~s~~~~l~h~  263 (277)
T 3f3z_A          220 REGTFT----F-PEKDWLNV----SPQAESLIRRLLTKSPKQRITSLQALEHE  263 (277)
T ss_dssp             HHCCCC----C-CHHHHTTS----CHHHHHHHHHHTCSSTTTSCCHHHHTTSH
T ss_pred             HhCCCC----C-CchhhhcC----CHHHHHHHHHHccCChhhCcCHHHHhcCH
Confidence            111100    0 00001122    33488999999999999999999998643

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=2e-39  Score=336.75  Aligned_cols=253  Identities=21%  Similarity=0.321  Sum_probs=197.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .++|++.+.||+|+||.||+|+.. |+.||||+++...  ..+.+.+|++++++++||||+++++++...       ...
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-------~~~   89 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEE-------KGG   89 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC---------C
T ss_pred             hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-------CCc
Confidence            467889999999999999999874 8899999987432  457789999999999999999999987653       236


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  165 (278)
T 1byg_A           90 LYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK  165 (278)
T ss_dssp             CEEEECCCTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             eEEEEecCCCCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcEEEeeccccc
Confidence            799999999999999987531 2237899999999999999999999   789999999999999999999999999986


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~  677 (747)
                      ........               ..++..|++||.+....++.++|||||||++|||+| |+.|+...............
T Consensus       166 ~~~~~~~~---------------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~  230 (278)
T 1byg_A          166 EASSTQDT---------------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG  230 (278)
T ss_dssp             -------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTT
T ss_pred             cccccccC---------------CCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcC
Confidence            54322110               123456889999888889999999999999999998 99998765443322221111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                              ..+.....++    ..+.+++.+||+.||.+|||+.|+++.|+.+..
T Consensus       231 --------~~~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~  273 (278)
T 1byg_A          231 --------YKMDAPDGCP----PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  273 (278)
T ss_dssp             --------CCCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --------CCCCCcccCC----HHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence                    0111122333    348899999999999999999999999998754

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.2e-39  Score=349.74  Aligned_cols=246  Identities=21%  Similarity=0.258  Sum_probs=188.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHH-HhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDF-LSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~-l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||+||+|+. .+++.||||+++...   ......+.+|..+ ++.++|||||++++++...     
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~-----  111 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA-----  111 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECS-----
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeC-----
Confidence            46799999999999999999995 468999999997543   2334556677776 5778999999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus       112 ---~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~ikL~D  182 (373)
T 2r5t_A          112 ---DKLYFVLDYINGGELFYHLQRE---RCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTD  182 (373)
T ss_dssp             ---SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECC
T ss_pred             ---CEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEee
Confidence               4899999999999999999763   358899999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~  672 (747)
                      ||+++........            ....+++..|+|||++....++.++|||||||++|||++|..||........ ..
T Consensus       183 FG~a~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~  250 (373)
T 2r5t_A          183 FGLCKENIEHNST------------TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDN  250 (373)
T ss_dssp             CCBCGGGBCCCCC------------CCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHH
T ss_pred             CccccccccCCCc------------cccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence            9999753221110            1124577889999999988999999999999999999999999876543332 22


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL  724 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  724 (747)
                      +....          ..+...++.    .+.+++.+||+.||.+||++.+.+
T Consensus       251 i~~~~----------~~~~~~~~~----~~~~li~~lL~~dp~~R~~~~~~~  288 (373)
T 2r5t_A          251 ILNKP----------LQLKPNITN----SARHLLEGLLQKDRTKRLGAKDDF  288 (373)
T ss_dssp             HHHSC----------CCCCSSSCH----HHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred             HHhcc----------cCCCCCCCH----HHHHHHHHHcccCHHhCCCCCCCH
Confidence            22110          011122333    488999999999999999985433

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=8.5e-40  Score=352.96  Aligned_cols=267  Identities=22%  Similarity=0.270  Sum_probs=200.9

Q ss_pred             cCHHHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-----CCCcceeee
Q 044236          430 FYLEELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-----HPHLVSLLG  503 (747)
Q Consensus       430 ~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-----H~nIv~l~g  503 (747)
                      +++++.....++|.+.+.||+|+||.||+|+. .+++.||||+++.. ....+.+..|++++++++     |||||++++
T Consensus        25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~  103 (360)
T 3llt_A           25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHG  103 (360)
T ss_dssp             CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEE
T ss_pred             eeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccc
Confidence            33333334567899999999999999999995 57899999999743 334466788999999886     999999999


Q ss_pred             eeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee
Q 044236          504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL  583 (747)
Q Consensus       504 ~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  583 (747)
                      ++...        +..++||||+ +|+|.+++.... ...+++..+..++.||+.||+|||+   .+|+||||||+|||+
T Consensus       104 ~~~~~--------~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll  170 (360)
T 3llt_A          104 KFMYY--------DHMCLIFEPL-GPSLYEIITRNN-YNGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPENILL  170 (360)
T ss_dssp             EEEET--------TEEEEEECCC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEE
T ss_pred             eeeEC--------CeeEEEEcCC-CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCcccEEE
Confidence            99873        4789999999 889999997642 3458999999999999999999999   899999999999999


Q ss_pred             cC-------------------------CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC
Q 044236          584 DE-------------------------HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR  638 (747)
Q Consensus       584 d~-------------------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  638 (747)
                      +.                         ++.+||+|||+++.......               ...++..|+|||++....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~---------------~~~gt~~y~aPE~~~~~~  235 (360)
T 3llt_A          171 DDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHG---------------SIINTRQYRAPEVILNLG  235 (360)
T ss_dssp             SCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCC---------------SCCSCGGGCCHHHHTTCC
T ss_pred             ccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCc---------------CccCcccccCcHHHcCCC
Confidence            75                         78999999999975332110               124566789999999889


Q ss_pred             CCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHHhccCcCC-----------ccccccc-c----ccCCCC------
Q 044236          639 TKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMASFGSQDG-----------RRRIVDP-V----VLTTCS------  695 (747)
Q Consensus       639 ~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~~~~~~~~-----------~~~~~d~-~----~~~~~~------  695 (747)
                      ++.++|||||||++|||+||+.||...... .+..+........           ....++. .    ......      
T Consensus       236 ~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  315 (360)
T 3llt_A          236 WDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIK  315 (360)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhh
Confidence            999999999999999999999998754432 2222222111000           0000000 0    000000      


Q ss_pred             ----------HHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          696 ----------QESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       696 ----------~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                                ......+.+++.+||+.||++|||+.|+++
T Consensus       316 ~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~  355 (360)
T 3llt_A          316 HVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLK  355 (360)
T ss_dssp             HHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             hhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                      001145779999999999999999999975

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.4e-39  Score=338.20  Aligned_cols=257  Identities=19%  Similarity=0.259  Sum_probs=201.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||+|++...  .....+.+.+|++++++++||||+++++++....      
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~------   78 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT------   78 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGG------
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCC------
Confidence            46788999999999999999995 57899999999753  2344567899999999999999999999886532      


Q ss_pred             CceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-----cccCCCCCCceeecCCCcE
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISG-----SFSNRLTTNNILLDEHRIA  589 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~-----ivHrDlk~~NILld~~~~~  589 (747)
                      ....++||||+++|+|.+++.... ....+++..+..++.|++.||+|||+   .+     |+||||||+||+++.++.+
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~ivH~dl~p~NIl~~~~~~~  155 (279)
T 2w5a_A           79 NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR---RSDGGHTVLHRDLKPANVFLDGKQNV  155 (279)
T ss_dssp             GTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HC------CCCCCSGGGEEECSSSCE
T ss_pred             CceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc---ccCCCCeeEEeccchhhEEEcCCCCE
Confidence            347899999999999999987531 23458999999999999999999999   56     9999999999999999999


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL  669 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~  669 (747)
                      ||+|||+++..........            ...++..|++||.+....++.++|||||||++|||++|+.|+.......
T Consensus       156 kl~dfg~~~~~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  223 (279)
T 2w5a_A          156 KLGDFGLARILNHDTSFAK------------TFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE  223 (279)
T ss_dssp             EECCCCHHHHC---CHHHH------------HHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             EEecCchheeecccccccc------------ccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHH
Confidence            9999999876543221110            1234567889999888889999999999999999999999987654433


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      +.........        +.+...++    ..+.+++.+||+.||.+|||+.||++.+.
T Consensus       224 ~~~~i~~~~~--------~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~~~  270 (279)
T 2w5a_A          224 LAGKIREGKF--------RRIPYRYS----DELNEIITRMLNLKDYHRPSVEEILENPL  270 (279)
T ss_dssp             HHHHHHHTCC--------CCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred             HHHHHhhccc--------ccCCcccC----HHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence            2222211111        11112233    34889999999999999999999998664

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=4.8e-39  Score=342.27  Aligned_cols=260  Identities=24%  Similarity=0.374  Sum_probs=202.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEE--EEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYV--AIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~v--AvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||.||+|+. .+|..+  |||.++.. .....+.+.+|+++++++ +||||+++++++...      
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~------   98 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR------   98 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET------
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeC------
Confidence            6789999999999999999984 456644  99988743 233456789999999999 899999999999773      


Q ss_pred             CCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                        ...++||||+++|+|.+++....             ....+++..++.++.|++.||+|||+   .+|+||||||+||
T Consensus        99 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NI  173 (327)
T 1fvr_A           99 --GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNI  173 (327)
T ss_dssp             --TEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGE
T ss_pred             --CceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccceE
Confidence              47899999999999999997542             12468999999999999999999999   8999999999999


Q ss_pred             eecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCC
Q 044236          582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPI  660 (747)
Q Consensus       582 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~  660 (747)
                      +++.++.+||+|||+++........             ....++..|++||.+....++.++|||||||++|||+| |+.
T Consensus       174 l~~~~~~~kL~Dfg~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~  240 (327)
T 1fvr_A          174 LVGENYVAKIADFGLSRGQEVYVKK-------------TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGT  240 (327)
T ss_dssp             EECGGGCEEECCTTCEESSCEECCC-----------------CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred             EEcCCCeEEEcccCcCccccccccc-------------cCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCC
Confidence            9999999999999998643221110             01123456889998888889999999999999999998 999


Q ss_pred             CCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQA  735 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  735 (747)
                      ||...............        ..+.....++    ..+.+++.+||+.||.+|||+.|+++.|+.+.....
T Consensus       241 pf~~~~~~~~~~~~~~~--------~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          241 PYCGMTCAELYEKLPQG--------YRLEKPLNCD----DEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             TTTTCCHHHHHHHGGGT--------CCCCCCTTBC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             CCCCCcHHHHHHHhhcC--------CCCCCCCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence            98765443322211111        0111112233    348899999999999999999999999998876543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=7e-39  Score=334.03  Aligned_cols=251  Identities=16%  Similarity=0.264  Sum_probs=194.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|.+.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++...        .
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--------~   93 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDY--------H   93 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--------S
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecC--------C
Confidence            5688899999999999999995 568999999997543 34567889999999999999999999999763        4


Q ss_pred             eEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee---cCCCcEEEec
Q 044236          518 KVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL---DEHRIAKLSD  593 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~D  593 (747)
                      ..++||||+++|+|.+++.... ....+++..+..++.|+++||+|||+   .+|+||||||+||++   +.++.+||+|
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~D  170 (285)
T 3is5_A           94 NMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIID  170 (285)
T ss_dssp             EEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECC
T ss_pred             eEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEe
Confidence            7899999999999999885421 13569999999999999999999999   899999999999999   4568899999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++.........             ...++..|++||.+. ..++.++|||||||++|||++|+.||...........
T Consensus       171 fg~a~~~~~~~~~~-------------~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~  236 (285)
T 3is5_A          171 FGLAELFKSDEHST-------------NAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQK  236 (285)
T ss_dssp             CCCCCC-----------------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred             eecceecCCcccCc-------------CcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhh
Confidence            99997654322111             123456788888774 5688999999999999999999999976554433332


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .........      ......+    ..+.+++.+||+.||++|||+.|+++
T Consensus       237 ~~~~~~~~~------~~~~~~~----~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          237 ATYKEPNYA------VECRPLT----PQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             HHHCCCCCC------C--CCCC----HHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             hccCCcccc------cccCcCC----HHHHHHHHHHccCChhhCcCHHHHhc
Confidence            222111100      0001122    34789999999999999999999985

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=3.1e-39  Score=351.70  Aligned_cols=249  Identities=18%  Similarity=0.232  Sum_probs=191.3

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCC--CCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQ--HPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~--H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .+|.+.+.||+|+||.||+|...+++.||||++...  .....+.+.+|+++|++++  |||||++++++...       
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~-------  128 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-------  128 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-------
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecC-------
Confidence            458899999999999999999877999999999743  3345578899999999996  59999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||| +.+|+|.+++...   ..+++..+..++.||+.||.|||+   .+|+||||||+|||++ ++.+||+|||
T Consensus       129 -~~~~lv~E-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG  199 (390)
T 2zmd_A          129 -QYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFG  199 (390)
T ss_dssp             -SEEEEEEE-CCSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCS
T ss_pred             -CEEEEEEe-cCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecC
Confidence             37999999 5688999999763   368999999999999999999999   7899999999999996 5889999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----------cCCCcCCceeehhHHHHHHhhCCCCCCC
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----------QRTKLEDDVYNFGFILLESLVGPIVTGK  664 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----------~~~s~k~DVwSfGvvl~Elltg~~p~~~  664 (747)
                      +++..........          ....++++.|+|||++..           ..++.++|||||||++|||++|+.||..
T Consensus       200 ~a~~~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~  269 (390)
T 2zmd_A          200 IANQMQPDTTSVV----------KDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ  269 (390)
T ss_dssp             SSCCC-------------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ccccccCCCcccc----------CCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchh
Confidence            9986643221110          011246778899998754           4689999999999999999999999965


Q ss_pred             Chh--hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          665 GEA--FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       665 ~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...  ..+..+..            +.....++......+.+++.+||+.||.+|||+.|+++.
T Consensus       270 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          270 IINQISKLHAIID------------PNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             CCCHHHHHHHHHC------------TTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hhHHHHHHHHHhC------------ccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence            321  11211111            110011111112348899999999999999999999864

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=5.7e-39  Score=335.74  Aligned_cols=259  Identities=20%  Similarity=0.255  Sum_probs=202.2

Q ss_pred             hCCCccc-cccCCCCeeEEEEEe---CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLS-FMGEGSRGKLYKGRL---ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~-~iG~G~~g~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ++|.+.+ .||+|+||.||+|..   .+++.||||+++...  ....+.+.+|++++++++||||+++++++..      
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   89 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------   89 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES------
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECC------
Confidence            5677777 899999999999963   347899999997542  2335778999999999999999999999843      


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        90 ---~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~D  160 (291)
T 1xbb_A           90 ---ESWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISD  160 (291)
T ss_dssp             ---SSEEEEEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECC
T ss_pred             ---CCcEEEEEeCCCCCHHHHHHhC---cCCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCcEEEcc
Confidence               3589999999999999999763   458999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++............         ....++..|++||.+....++.++|||||||++|||+| |+.||.......+..
T Consensus       161 fg~~~~~~~~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~  231 (291)
T 1xbb_A          161 FGLSKALRADENYYKAQ---------THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTA  231 (291)
T ss_dssp             CTTCEECCTTCSEEEC-------------CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHH
T ss_pred             CCcceeeccCCCccccc---------ccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence            99997654322211100         01123356888998888888999999999999999999 999997655443333


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .......        +.....++    ..+.+++.+||+.||.+||++.|+++.|+.+....
T Consensus       232 ~~~~~~~--------~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  281 (291)
T 1xbb_A          232 MLEKGER--------MGCPAGCP----REMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  281 (291)
T ss_dssp             HHHTTCC--------CCCCTTCC----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCC--------CCCCCCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence            3221111        11112233    34889999999999999999999999999875543

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1e-38  Score=337.89  Aligned_cols=258  Identities=18%  Similarity=0.235  Sum_probs=193.0

Q ss_pred             hCCCcc-ccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSL-SFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~-~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      +.|.+. +.||+|+||.||+|+ ..+++.||||++........+.+.+|++++.++ +||||+++++++...        
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~--------   83 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEE--------   83 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEET--------
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC--------
Confidence            567774 789999999999999 457999999999866555667889999999885 799999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc---EEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI---AKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---~kl~D  593 (747)
                      +..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.   +||+|
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~D  157 (316)
T 2ac3_A           84 DRFYLVFEKMRGGSILSHIHKR---RHFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICD  157 (316)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECC
T ss_pred             CEEEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEE
Confidence            4799999999999999999763   358999999999999999999999   79999999999999988765   99999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----cCCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      ||+++...........     ........+++..|+|||++..     ..++.++|||||||++|||++|+.||......
T Consensus       158 fg~~~~~~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~  232 (316)
T 2ac3_A          158 FDLGSGIKLNGDCSPI-----STPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGS  232 (316)
T ss_dssp             TTCCC------------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCS
T ss_pred             ccCccccccCCccccc-----cccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccc
Confidence            9999765422111100     0001112346778999998864     56889999999999999999999998643211


Q ss_pred             ----------------hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          669 ----------------LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       669 ----------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                                      ....+.. ..    ....+ .....+    ...+.+++.+||+.||.+|||+.|+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~-~~----~~~~~-~~~~~~----~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          233 DCGWDRGEACPACQNMLFESIQE-GK----YEFPD-KDWAHI----SCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             CSCC----CCHHHHHHHHHHHHH-CC----CCCCH-HHHTTS----CHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             cccccccccchhHHHHHHHHHhc-cC----cccCc-hhcccC----CHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence                            1111111 00    00000 000112    3348899999999999999999999874

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.8e-39  Score=348.17  Aligned_cols=271  Identities=13%  Similarity=0.067  Sum_probs=196.5

Q ss_pred             hCCCccccccCCCCeeEEEEEeC----CCcEEEEEEeeccchh-----------cHHHHHHHHHHHhcCCCCCcceeeee
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKY-----------SIQNLKVRLDFLSKLQHPHLVSLLGH  504 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~~~-----------~~~~~~~E~~~l~~l~H~nIv~l~g~  504 (747)
                      ++|.+.+.||+|+||.||+|+..    ++..||||++......           ....+.+|+..++.++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            56889999999999999999964    5788999998753211           12346778899999999999999999


Q ss_pred             eeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec
Q 044236          505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD  584 (747)
Q Consensus       505 ~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  584 (747)
                      +....    ......++||||+ +|+|.+++...   ..+++..++.++.||+.||+|||+   .+|+||||||+|||++
T Consensus       117 ~~~~~----~~~~~~~lv~e~~-~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~  185 (345)
T 2v62_A          117 GLTEF----KGRSYRFMVMERL-GIDLQKISGQN---GTFKKSTVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLG  185 (345)
T ss_dssp             EEEES----SSCEEEEEEEECE-EEEHHHHCBGG---GBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEE
T ss_pred             ccccc----CCCcEEEEEEecc-CCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEc
Confidence            87631    1235789999999 99999999864   269999999999999999999999   7999999999999999


Q ss_pred             CCC--cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCC
Q 044236          585 EHR--IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       585 ~~~--~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                      .++  .+||+|||+++............     ........++..|+|||.+....++.++|||||||++|||+||+.||
T Consensus       186 ~~~~~~~kL~Dfg~a~~~~~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf  260 (345)
T 2v62_A          186 YKNPDQVYLADYGLSYRYCPNGNHKQYQ-----ENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPW  260 (345)
T ss_dssp             SSSTTSEEECCCTTCEESSGGGCCCCCC-----CCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             cCCCCcEEEEeCCCceecccccccccch-----hccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence            877  99999999998765432211100     00112235677899999998888999999999999999999999999


Q ss_pred             CCC--hhhhHHHHHhccCcCCccccccccc-cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          663 GKG--EAFLLNEMASFGSQDGRRRIVDPVV-LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       663 ~~~--~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ...  ............... ......... ...++    ..+.+++.+||+.||++|||+.+|++.|+.+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~  327 (345)
T 2v62_A          261 EQNLKDPVAVQTAKTNLLDE-LPQSVLKWAPSGSSC----CEIAQFLVCAHSLAYDEKPNYQALKKILNPHG  327 (345)
T ss_dssp             GGGTTCHHHHHHHHHHHHHT-TTHHHHHHSCTTSCC----HHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred             cccccccHHHHHHHHhhccc-ccHHHHhhccccccH----HHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence            532  111111111110000 000000000 01223    34889999999999999999999999998653

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=3.5e-39  Score=342.69  Aligned_cols=246  Identities=16%  Similarity=0.189  Sum_probs=175.7

Q ss_pred             cccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCceEEEE
Q 044236          445 LSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      .+.||+|+||.||+|+. .+|+.||||++...   ....+.+|+.++++++ |||||++++++.+.        ...++|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~--------~~~~lv   84 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQ--------LHTFLV   84 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECS--------SEEEEE
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcC--------CEEEEE
Confidence            37899999999999995 56899999998742   3466788999999997 99999999999763        478999


Q ss_pred             EeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC---cEEEeccccccc
Q 044236          523 YEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR---IAKLSDYGISII  599 (747)
Q Consensus       523 ~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl~DFGla~~  599 (747)
                      |||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++   .+||+|||+++.
T Consensus        85 ~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~  158 (325)
T 3kn6_A           85 MELLNGGELFERIKKK---KHFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARL  158 (325)
T ss_dssp             ECCCCSCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECCCTTCEE
T ss_pred             EEccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEecccccee
Confidence            9999999999999763   469999999999999999999999   8999999999999997665   899999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh----hHHHHHh
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF----LLNEMAS  675 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~----~~~~~~~  675 (747)
                      ........            ...+++..|+|||++....++.++|||||||++|||++|+.||......    ...++..
T Consensus       159 ~~~~~~~~------------~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~  226 (325)
T 3kn6_A          159 KPPDNQPL------------KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMK  226 (325)
T ss_dssp             CCC----------------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHH
T ss_pred             cCCCCCcc------------cccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHH
Confidence            54322110            1134567889999999999999999999999999999999999753321    0111111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....... . .++..    ....+..+.+++.+||+.||.+|||+.|+++
T Consensus       227 ~i~~~~~-~-~~~~~----~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          227 KIKKGDF-S-FEGEA----WKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             HHTTTCC-C-CCSHH----HHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             HHHcCCC-C-CCccc----ccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence            1000000 0 01111    1122345889999999999999999999874

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.7e-39  Score=351.57  Aligned_cols=275  Identities=18%  Similarity=0.235  Sum_probs=193.1

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~  513 (747)
                      ..++|++.+.||+|+||.||+|+ ..+|+.||||++...  .....+.+.+|+.+++++. |||||++++++...+    
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~----   82 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADN----   82 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTT----
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCC----
Confidence            45789999999999999999998 467999999998632  3445567889999999997 999999999987532    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....++|||||+ |+|.+++..    ..+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus        83 --~~~~~lv~e~~~-~~L~~~~~~----~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~D  152 (388)
T 3oz6_A           83 --DRDVYLVFDYME-TDLHAVIRA----NILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKVAD  152 (388)
T ss_dssp             --SSCEEEEEECCS-EEHHHHHHH----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECC
T ss_pred             --CCEEEEEecccC-cCHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEecC
Confidence              346899999997 589988874    358999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccC---------CCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCC
Q 044236          594 YGISIIMEEHEKLEAKG---------EGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTG  663 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~  663 (747)
                      ||+|+............         ............+++..|+|||++.. ..++.++|||||||++|||++|+.||.
T Consensus       153 FG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  232 (388)
T 3oz6_A          153 FGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP  232 (388)
T ss_dssp             CTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence            99998654321110000         00000111123467888999998875 678999999999999999999999887


Q ss_pred             CCh-hhhHHHHHhccCcCCcccc---c------------------cccccCC------------CCHHHHHHHHHHHhHc
Q 044236          664 KGE-AFLLNEMASFGSQDGRRRI---V------------------DPVVLTT------------CSQESLSIVVSITNKC  709 (747)
Q Consensus       664 ~~~-~~~~~~~~~~~~~~~~~~~---~------------------d~~~~~~------------~~~~~~~~~~~l~~~C  709 (747)
                      ... ...+..+...........+   .                  .......            ........+.+++.+|
T Consensus       233 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~  312 (388)
T 3oz6_A          233 GSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKL  312 (388)
T ss_dssp             CSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHh
Confidence            543 2333332221111100000   0                  0000000            0002234588999999


Q ss_pred             cCCCCCCCCCHHHHHHH
Q 044236          710 ICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       710 l~~dP~~RPs~~evl~~  726 (747)
                      |+.||++|||+.|++++
T Consensus       313 L~~dP~~R~t~~e~l~H  329 (388)
T 3oz6_A          313 LQFNPNKRISANDALKH  329 (388)
T ss_dssp             CCSSGGGSCCHHHHTTS
T ss_pred             hccCcccCCCHHHHhCC
Confidence            99999999999999875

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=9.5e-39  Score=334.62  Aligned_cols=253  Identities=19%  Similarity=0.245  Sum_probs=194.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ++|.....||+|+||.||+|+. .+++.||||.+........+.+.+|+.++++++||||+++++++...        ..
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--------~~   93 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSEN--------GF   93 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEET--------TE
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeC--------Cc
Confidence            3455667899999999999994 67899999999866555667899999999999999999999999763        37


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCcEEEeccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRIAKLSDYGIS  597 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla  597 (747)
                      .++||||+++|+|.+++........+++..+..++.|++.||+|||+   .+|+||||||+||+++. ++.+||+|||++
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~  170 (295)
T 2clq_A           94 IKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTS  170 (295)
T ss_dssp             EEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTC
T ss_pred             EEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeecccc
Confidence            89999999999999999765434457789999999999999999999   89999999999999987 899999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC--CCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR--TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +.........            ....++..|++||.+....  ++.++|||||||++|||++|+.||.............
T Consensus       171 ~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  238 (295)
T 2clq_A          171 KRLAGINPCT------------ETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKV  238 (295)
T ss_dssp             EESCC-----------------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHH
T ss_pred             cccCCCCCcc------------cccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhh
Confidence            7654321110            0123456788899886543  8899999999999999999999986432211111110


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                       ..     ....+.+...++    ..+.+++.+||+.||++|||+.|+++
T Consensus       239 -~~-----~~~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          239 -GM-----FKVHPEIPESMS----AEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             -HH-----HCCCCCCCTTSC----HHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             -cc-----ccccccccccCC----HHHHHHHHHHccCChhhCCCHHHHhc
Confidence             00     001122222333    34889999999999999999999985

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=6.6e-40  Score=347.26  Aligned_cols=271  Identities=16%  Similarity=0.205  Sum_probs=201.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++++++||||+++++++....    ....
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~~  103 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRER----GAKH  103 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEE----TTEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEecc----CCCc
Confidence            36789999999999999999995 679999999997666666788999999999999999999999987421    1134


Q ss_pred             eEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ..++||||+++|+|.+++... .....+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus       104 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~  180 (317)
T 2buj_A          104 EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGS  180 (317)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCSS
T ss_pred             eeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEecCc
Confidence            789999999999999988752 124569999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC---CCcCCceeehhHHHHHHhhCCCCCCCChh--hhHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR---TKLEDDVYNFGFILLESLVGPIVTGKGEA--FLLN  671 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~s~k~DVwSfGvvl~Elltg~~p~~~~~~--~~~~  671 (747)
                      ++............   ..........++..|++||.+....   ++.++|||||||++|||++|+.||.....  ....
T Consensus       181 ~~~~~~~~~~~~~~---~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~  257 (317)
T 2buj_A          181 MNQACIHVEGSRQA---LTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVA  257 (317)
T ss_dssp             CEESCEEEESHHHH---HHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHH
T ss_pred             chhccccccccccc---ccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhh
Confidence            86543211100000   0000001123356788888876443   68899999999999999999999853110  0111


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ......        ........++    ..+.+++.+||+.||.+|||+.|+++.|+.+.
T Consensus       258 ~~~~~~--------~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~  305 (317)
T 2buj_A          258 LAVQNQ--------LSIPQSPRHS----SALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ  305 (317)
T ss_dssp             HHHHCC----------CCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred             HHhhcc--------CCCCccccCC----HHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence            111100        0000112223    34889999999999999999999999998764

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=7.8e-39  Score=351.99  Aligned_cols=252  Identities=21%  Similarity=0.299  Sum_probs=190.3

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--------hcHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIES  508 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~  508 (747)
                      ..++|.+.+.||+|+||.||+|+. .+++.||||++.....        .....+.+|+++|++++|||||++++++.. 
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence            457899999999999999999984 5689999999975321        122357899999999999999999999754 


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC--
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH--  586 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~--  586 (747)
                              ...++|||||++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.+  
T Consensus       212 --------~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~  277 (419)
T 3i6u_A          212 --------EDYYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEE  277 (419)
T ss_dssp             --------SEEEEEEECCTTCBGGGGTSSS---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSS
T ss_pred             --------CceEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCC
Confidence                    2579999999999999998753   469999999999999999999999   789999999999999654  


Q ss_pred             -CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCC
Q 044236          587 -RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       587 -~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                       +.+||+|||+++........             ...+++..|+|||++.   ...++.++|||||||++|||+||+.||
T Consensus       278 ~~~~kl~DFG~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf  344 (419)
T 3i6u_A          278 DCLIKITDFGHSKILGETSLM-------------RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPF  344 (419)
T ss_dssp             SCCEEECCSSTTTSCC------------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             cceEEEeecccceecCCCccc-------------cccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCC
Confidence             45999999999765432211             1135677889999874   356888999999999999999999998


Q ss_pred             CCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          663 GKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       663 ~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..... ..+..........     ..+.....+    ...+.+++.+||+.||.+|||+.|++++
T Consensus       345 ~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~----~~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          345 SEHRTQVSLKDQITSGKYN-----FIPEVWAEV----SEKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             CCCSSSCCHHHHHHTTCCC-----CCHHHHTTS----CHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCcchHHHHHHHhcCCCC-----CCchhhccc----CHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            64322 1122211111110     011111222    3348899999999999999999999863

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-39  Score=347.27  Aligned_cols=269  Identities=17%  Similarity=0.157  Sum_probs=201.3

Q ss_pred             hCCCccccccCCCCeeEEEEEeC---------CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcce----------
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE---------NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVS----------  500 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~---------~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~----------  500 (747)
                      ++|.+.+.||+|+||.||+|+..         +++.||||.+...     +.+.+|++++++++|||||+          
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL  116 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence            57899999999999999999864         3789999998743     35788999999999999998          


Q ss_pred             -----eeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          501 -----LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       501 -----l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                           +++++...       ....++||||+ +|+|.+++... ....+++..+..++.|++.||+|||+   .+|+|||
T Consensus       117 ~~i~~~~~~~~~~-------~~~~~lv~e~~-~~~L~~~l~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~D  184 (352)
T 2jii_A          117 LAIPTCMGFGVHQ-------DKYRFLVLPSL-GRSLQSALDVS-PKHVLSERSVLQVACRLLDALEFLHE---NEYVHGN  184 (352)
T ss_dssp             CSCCCCCEEEEET-------TTEEEEEEECC-CEEHHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSC
T ss_pred             cCccchhhccccC-------CcEEEEEecCC-CcCHHHHHHhC-CcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCC
Confidence                 45555441       34789999999 99999999753 12469999999999999999999999   7999999


Q ss_pred             CCCCceeecCCC--cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHH
Q 044236          576 LTTNNILLDEHR--IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILL  653 (747)
Q Consensus       576 lk~~NILld~~~--~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~  653 (747)
                      |||+|||++.++  .+||+|||+++..............     ......++..|++||.+....++.++|||||||++|
T Consensus       185 ikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~  259 (352)
T 2jii_A          185 VTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEG-----SRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCML  259 (352)
T ss_dssp             CCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTT-----SSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCHHHEEEcCCCCceEEEecCcceeeccCCCcccccccc-----ccccccCCccccCHHHHccCCCCchhhHHHHHHHHH
Confidence            999999999998  9999999999876543321110000     001124677899999998889999999999999999


Q ss_pred             HHhhCCCCCCCCh--hhhHHHHHhccCcCCccccccccc-cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          654 ESLVGPIVTGKGE--AFLLNEMASFGSQDGRRRIVDPVV-LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       654 Elltg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ||++|+.||....  ...+....... ........++.. ...++    ..+.+++.+||+.||.+|||+.+|++.|+.+
T Consensus       260 el~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  334 (352)
T 2jii_A          260 KWLYGFLPWTNCLPNTEDIMKQKQKF-VDKPGPFVGPCGHWIRPS----ETLQKYLKVVMALTYEEKPPYAMLRNNLEAL  334 (352)
T ss_dssp             HHHHSCCTTGGGTTCHHHHHHHHHHH-HHSCCCEECTTSCEECCC----HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCCcCHHHHHHHHHhc-cCChhhhhhhccccCCCc----HHHHHHHHHHHhCChhhCCCHHHHHHHHHHH
Confidence            9999999987532  22121111100 001111111100 01123    3488999999999999999999999999988


Q ss_pred             HHHhh
Q 044236          731 AQVQA  735 (747)
Q Consensus       731 ~~~~~  735 (747)
                      .....
T Consensus       335 ~~~~~  339 (352)
T 2jii_A          335 LQDLR  339 (352)
T ss_dssp             HHHTT
T ss_pred             HHhcC
Confidence            76543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.5e-39  Score=345.77  Aligned_cols=252  Identities=18%  Similarity=0.259  Sum_probs=193.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++....    ...+|++++.++ +|||||++++++.+.        
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~--------   88 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDG--------   88 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECS--------
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcC--------
Confidence            46799999999999999999995 5689999999975432    235688888887 799999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC----CcEEEe
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH----RIAKLS  592 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~----~~~kl~  592 (747)
                      ...++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||+..+    +.+||+
T Consensus        89 ~~~~lv~E~~~gg~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~  162 (342)
T 2qr7_A           89 KYVYVVTELMKGGELLDKILRQ---KFFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRIC  162 (342)
T ss_dssp             SEEEEEECCCCSCBHHHHHHTC---TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEEC
T ss_pred             CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEEE
Confidence            4899999999999999998753   458999999999999999999999   899999999999998432    359999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+++.........            ...+++..|+|||++....++.++|||||||++|||++|..||.........+
T Consensus       163 Dfg~a~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~  230 (342)
T 2qr7_A          163 DFGFAKQLRAENGLL------------MTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEE  230 (342)
T ss_dssp             CCTTCEECBCTTCCB------------CCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHH
T ss_pred             ECCCcccCcCCCCce------------eccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHH
Confidence            999997654322110            11345778999999988889999999999999999999999987532222222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +......... . ...    ......+..+.+++.+||+.||++|||+.|++++
T Consensus       231 ~~~~i~~~~~-~-~~~----~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~h  278 (342)
T 2qr7_A          231 ILARIGSGKF-S-LSG----GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH  278 (342)
T ss_dssp             HHHHHHHCCC-C-CCS----TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             HHHHHccCCc-c-cCc----cccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            1111000000 0 111    1112233448899999999999999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.6e-38  Score=354.35  Aligned_cols=209  Identities=17%  Similarity=0.248  Sum_probs=155.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+++|++++|||||+++++|...+   ...
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~---~~~  128 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKD---VEK  128 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSC---TTT
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCC---ccc
Confidence            36799999999999999999984 57999999998642  3345577899999999999999999999986532   122


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....|+||||+. |+|.+++..   ...+++..+..++.||++||+|||+   .+||||||||+|||++.++.+||+|||
T Consensus       129 ~~~~~lv~e~~~-~~L~~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl~DFG  201 (458)
T 3rp9_A          129 FDELYVVLEIAD-SDFKKLFRT---PVYLTELHIKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCDFG  201 (458)
T ss_dssp             CCCEEEEECCCS-EEHHHHHHS---SCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred             CceEEEEEeccc-cchhhhccc---CCCCCHHHHHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEeecccc
Confidence            357899999984 699998875   3469999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccchhcccCC---------------CCCcccccceeeecCCcceeeee-eccCCCcCCceeehhHHHHHHhh
Q 044236          596 ISIIMEEHEKLEAKGE---------------GPKARYGFLFICRTSAENVVIVV-DIQRTKLEDDVYNFGFILLESLV  657 (747)
Q Consensus       596 la~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~e~~-~~~~~s~k~DVwSfGvvl~Ellt  657 (747)
                      +|+.............               ...........+++..|+|||++ ....|+.++|||||||++|||+|
T Consensus       202 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          202 LARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             TCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             cchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            9987643221100000               00000011234668889999976 46679999999999999999999

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-39  Score=343.93  Aligned_cols=243  Identities=18%  Similarity=0.236  Sum_probs=196.5

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch--------hcHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK--------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIES  508 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~--------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~  508 (747)
                      ..++|++.+.||+|+||.||+|+ ..+++.||||+++....        ...+.+.+|++++++++||||++++++|...
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            45789999999999999999998 46799999999975321        1234567899999999999999999999763


Q ss_pred             CCCCCCCCceEEEEEeccCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          509 GSQDDSNTNKVFLVYEYIPNG-SYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                              ...++||||+.+| +|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++
T Consensus       102 --------~~~~lv~e~~~~g~~l~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~  167 (335)
T 3dls_A          102 --------GFFQLVMEKHGSGLDLFAFIDRH---PRLDEPLASYIFRQLVSAVGYLRL---KDIIHRDIKDENIVIAEDF  167 (335)
T ss_dssp             --------SEEEEEEECCTTSCBHHHHHHTC---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTS
T ss_pred             --------CEEEEEEEeCCCCccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEEeccCHHHEEEcCCC
Confidence                    4789999999877 999998753   459999999999999999999999   8999999999999999999


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCCh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGE  666 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~  666 (747)
                      .+||+|||+++........             ....++..|++||++....+ +.++|||||||++|||++|+.||....
T Consensus       168 ~~kL~Dfg~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  234 (335)
T 3dls_A          168 TIKLIDFGSAAYLERGKLF-------------YTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE  234 (335)
T ss_dssp             CEEECCCTTCEECCTTCCB-------------CEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG
T ss_pred             cEEEeecccceECCCCCce-------------eccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH
Confidence            9999999999765432211             12346778999999877776 789999999999999999999986422


Q ss_pred             hhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..     .        .....+  ...++.    .+.+++.+||+.||++|||+.|+++.
T Consensus       235 ~~-----~--------~~~~~~--~~~~~~----~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          235 ET-----V--------EAAIHP--PYLVSK----ELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             GG-----T--------TTCCCC--SSCCCH----HHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             HH-----H--------hhccCC--CcccCH----HHHHHHHHHccCChhhCcCHHHHhcC
Confidence            10     0        000011  112233    48899999999999999999999975

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=9e-39  Score=336.46  Aligned_cols=250  Identities=18%  Similarity=0.264  Sum_probs=197.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|+.++++++||||+++++++...        .
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~   79 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYEST--------T   79 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECS--------S
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccC--------C
Confidence            35788999999999999999995 47999999999865544556788999999999999999999998763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee---cCCCcEEEecc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL---DEHRIAKLSDY  594 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DF  594 (747)
                      ..++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||++   +.++.+||+||
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Df  153 (304)
T 2jam_A           80 HYYLVMQLVSGGELFDRILER---GVYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDF  153 (304)
T ss_dssp             EEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSC
T ss_pred             EEEEEEEcCCCccHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEccC
Confidence            789999999999999988753   358999999999999999999999   789999999999999   78899999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~  673 (747)
                      |+++........              ...++..|++||.+....++.++|||||||++|||++|+.||........ ..+
T Consensus       154 g~~~~~~~~~~~--------------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i  219 (304)
T 2jam_A          154 GLSKMEQNGIMS--------------TACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKI  219 (304)
T ss_dssp             STTCCCCCBTTH--------------HHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH
T ss_pred             CcceecCCCccc--------------cccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence            998654322110              12356678899999888899999999999999999999999875543322 222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .. ....     .+......++    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       220 ~~-~~~~-----~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          220 KE-GYYE-----FESPFWDDIS----ESAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             HH-CCCC-----CCTTTTTTSC----HHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             Hc-CCCC-----CCccccccCC----HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            21 1110     1111112233    348899999999999999999999864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=6.1e-39  Score=350.41  Aligned_cols=253  Identities=17%  Similarity=0.259  Sum_probs=190.1

Q ss_pred             hhCCCcc-ccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHh-cCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSL-SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS-KLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~-~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~-~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|.+. +.||+|+||+||+|+. .+|+.||||+++..     ..+.+|++++. ..+|||||+++++|....    ..
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~----~~  130 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLY----AG  130 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEE----TT
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecc----cC
Confidence            3567665 6899999999999985 56999999998632     35678888874 558999999999886421    11


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---CCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---HRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~  592 (747)
                      ....++|||||++|+|.+++.... ...+++..+..|+.||+.||.|||+   .+|+||||||+|||++.   ++.+||+
T Consensus       131 ~~~~~lv~E~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~  206 (400)
T 1nxk_A          131 RKCLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLT  206 (400)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEEC
T ss_pred             CcEEEEEEEeCCCCcHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEE
Confidence            347899999999999999997642 3469999999999999999999999   89999999999999997   7899999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh----
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF----  668 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~----  668 (747)
                      |||+++........             ...+++..|+|||++....++.++|||||||++|||++|+.||......    
T Consensus       207 DFG~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~  273 (400)
T 1nxk_A          207 DFGFAKETTSHNSL-------------TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP  273 (400)
T ss_dssp             CCTTCEECC------------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCC
T ss_pred             ecccccccCCCCcc-------------ccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccH
Confidence            99999765432111             1235677899999998889999999999999999999999998654321    


Q ss_pred             -hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          669 -LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       669 -~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                       ....+.. ...    ....+ ....++    ..+.+++.+||+.||++|||+.|++++-
T Consensus       274 ~~~~~i~~-~~~----~~~~~-~~~~~s----~~~~~li~~~L~~dP~~Rpt~~eil~hp  323 (400)
T 1nxk_A          274 GMKTRIRM-GQY----EFPNP-EWSEVS----EEVKMLIRNLLKTEPTQRMTITEFMNHP  323 (400)
T ss_dssp             SHHHHHHH-TCC----CCCTT-TTTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred             HHHHHHHc-Ccc----cCCCc-ccccCC----HHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence             1111111 100    00111 112233    3488999999999999999999999754

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.6e-39  Score=338.62  Aligned_cols=261  Identities=20%  Similarity=0.251  Sum_probs=194.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||++....  ....+.+.+|++++++++||||+++++++...        
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--------   74 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRK--------   74 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--------
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecC--------
Confidence            5788999999999999999995 469999999986433  23346788999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++++|.+++..   ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        75 ~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  148 (311)
T 4agu_A           75 RRLHLVFEYCDHTVLHELDRY---QRGVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGF  148 (311)
T ss_dssp             TEEEEEEECCSEEHHHHHHHT---SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CeEEEEEEeCCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCC
Confidence            478999999999999988765   3458999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      ++.........            ....++..|++||.+.. ..++.++|||||||++|||++|+.||...... ....+.
T Consensus       149 ~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~  216 (311)
T 4agu_A          149 ARLLTGPSDYY------------DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIR  216 (311)
T ss_dssp             CEECC------------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred             chhccCccccc------------CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            97654322111            01234567889998865 56899999999999999999999998754332 222211


Q ss_pred             hccCc------------C--CccccccccccCC---CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQ------------D--GRRRIVDPVVLTT---CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~------------~--~~~~~~d~~~~~~---~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....            .  ......++.....   ..+.....+.+++.+||+.||.+|||+.|++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          217 KTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             HHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             HHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            11000            0  0001111110000   001233448899999999999999999999853

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=5.1e-39  Score=346.87  Aligned_cols=261  Identities=18%  Similarity=0.237  Sum_probs=201.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||+|++... .....+.+.+|+.++++++||||+++++++...        
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------  103 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD--------  103 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEET--------
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEEC--------
Confidence            35788999999999999999995 46899999999754 334457789999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceeecCCCcEEEeccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVIS-GSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~-~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   . +|+||||||+|||++.++.+||+|||
T Consensus       104 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  177 (360)
T 3eqc_A          104 GEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFG  177 (360)
T ss_dssp             TEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCSGGGEEECTTCCEEECCCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCccHHHEEECCCCCEEEEECC
Confidence            4789999999999999999763   358999999999999999999998   5 79999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++........              ...++..|++||++....++.++|||||||++|||++|+.||..........+..
T Consensus       178 ~~~~~~~~~~~--------------~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  243 (360)
T 3eqc_A          178 VSGQLIDSMAN--------------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFG  243 (360)
T ss_dssp             CCHHHHHHC------------------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC
T ss_pred             CCccccccccc--------------CCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhc
Confidence            98654322110              1245668899999988889999999999999999999999997655443332221


Q ss_pred             ccCcCCc---------------------------cc----cccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHH
Q 044236          676 FGSQDGR---------------------------RR----IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL  724 (747)
Q Consensus       676 ~~~~~~~---------------------------~~----~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  724 (747)
                      .......                           ..    +................+.+++.+||+.||++|||+.|++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell  323 (360)
T 3eqc_A          244 CQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLM  323 (360)
T ss_dssp             ------------------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHH
T ss_pred             ccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHh
Confidence            1000000                           00    0000000000111234588999999999999999999999


Q ss_pred             HHH
Q 044236          725 WNL  727 (747)
Q Consensus       725 ~~L  727 (747)
                      ++-
T Consensus       324 ~hp  326 (360)
T 3eqc_A          324 VHA  326 (360)
T ss_dssp             TSH
T ss_pred             hCh
Confidence            744

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.6e-38  Score=332.97  Aligned_cols=285  Identities=27%  Similarity=0.441  Sum_probs=249.4

Q ss_pred             ChhHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc--cccCCccceEeCC----CcEEEEecCCCCCCCCCCCCCCCCCCCC
Q 044236            2 QTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCN--LTSTAHVSITCQD----NSVTGLKIMGDKPVKENTAYNGHPIPNQ   75 (747)
Q Consensus         2 ~~~~~~~l~~~k~~~~~~~~l~~w~~~~~~~c~--~~~~~~~~v~c~~----~~v~~l~l~~~~~~~~~~~~~~~~~~~~   75 (747)
                      .++|++||++||+++.+|..+++|+.. +|||.  |.     ||+|..    ++|+.|++.++.+               
T Consensus         4 ~~~~~~aL~~~k~~~~~~~~l~~W~~~-~~~C~~~w~-----gv~C~~~~~~~~l~~L~L~~~~l---------------   62 (313)
T 1ogq_A            4 NPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCNRTWL-----GVLCDTDTQTYRVNNLDLSGLNL---------------   62 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGTTCCTT-SCTTTTCST-----TEEECCSSSCCCEEEEEEECCCC---------------
T ss_pred             CHHHHHHHHHHHHhcCCcccccCCCCC-CCCCcCCCc-----ceEeCCCCCCceEEEEECCCCCc---------------
Confidence            368999999999999888778899764 78998  65     799964    6899999987643               


Q ss_pred             CCCCccCCC--cccccccCCCCCCEEEeec-cCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccC
Q 044236           76 TLSESFSID--SFVTTLTRLTTLRVLSLVS-LGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN  152 (747)
Q Consensus        76 ~l~~~~~~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  152 (747)
                             .+  .+|..+.++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|
T Consensus        63 -------~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           63 -------PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             -------SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             -------cCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence                   12  4567899999999999995 9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCc-cCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCC
Q 044236          153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA-TLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLP  230 (747)
Q Consensus       153 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~  230 (747)
                      .+++.+|..|..+++|++|++++|++++.+|..++++. +|+.|++++|.+++.+|. +..+. |+.|+|++|.+++..|
T Consensus       136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred             ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence            99999999999999999999999999999999999998 999999999999988774 66676 9999999999987766


Q ss_pred             CC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCC
Q 044236          231 LM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSK  307 (747)
Q Consensus       231 ~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~  307 (747)
                      ..   .++|+.|+|++|.+++.+|. +..+++|+.|+|++|+|++.+|..+..+++|+.|+|++|+++|.+|.. ..++.
T Consensus       215 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~  292 (313)
T 1ogq_A          215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR  292 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGG
T ss_pred             HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccc
Confidence            43   47899999999999987776 888999999999999999999999999999999999999999999975 33333


Q ss_pred             CCCCCccceeeecccc
Q 044236          308 LDSISDKRVVKFGGNC  323 (747)
Q Consensus       308 l~~~~~~~~~~~~~n~  323 (747)
                      |      ..+.+.+|.
T Consensus       293 L------~~l~l~~N~  302 (313)
T 1ogq_A          293 F------DVSAYANNK  302 (313)
T ss_dssp             S------CGGGTCSSS
T ss_pred             c------ChHHhcCCC
Confidence            3      344556664

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=5.7e-39  Score=341.91  Aligned_cols=262  Identities=16%  Similarity=0.181  Sum_probs=190.0

Q ss_pred             HHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ...++|++.+.||+|+||.||+|+ ..+++.||||+++....  ...+.+.+|++++++++|||||++++++...     
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----  105 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHN-----  105 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEET-----
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecC-----
Confidence            345789999999999999999998 45799999999974432  2345678999999999999999999999873     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee-----cCCCc
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL-----DEHRI  588 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl-----d~~~~  588 (747)
                         ...++||||++ |+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||+     +.++.
T Consensus       106 ---~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~  175 (329)
T 3gbz_A          106 ---HRLHLIFEYAE-NDLKKYMDKN---PDVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPV  175 (329)
T ss_dssp             ---TEEEEEEECCS-EEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCE
T ss_pred             ---CEEEEEEecCC-CCHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccce
Confidence               47999999998 5999998763   358999999999999999999999   799999999999999     45566


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      +||+|||+++.........            ....++..|+|||++... .++.++|||||||++|||++|+.||.....
T Consensus       176 ~kl~Dfg~a~~~~~~~~~~------------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  243 (329)
T 3gbz_A          176 LKIGDFGLARAFGIPIRQF------------THEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSE  243 (329)
T ss_dssp             EEECCTTHHHHHC-----------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             EEECcCCCccccCCccccc------------CCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCH
Confidence            9999999997653221110            112346678999988764 489999999999999999999999875432


Q ss_pred             -hhHHHHHhccCcCC---ccccc-c-------ccccC-----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          668 -FLLNEMASFGSQDG---RRRIV-D-------PVVLT-----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       668 -~~~~~~~~~~~~~~---~~~~~-d-------~~~~~-----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                       ..+..+........   ..... .       +....     ..+......+.+++.+||+.||.+|||+.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          244 IDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence             22222222111000   00000 0       00000     001112345889999999999999999999985

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=3.9e-39  Score=337.63  Aligned_cols=268  Identities=14%  Similarity=0.144  Sum_probs=202.0

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ..++|++.+.||+|+||.||+|+. .+++.||||++......  ..+.+|++++++++|++++..+++|...       .
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~e~~~l~~l~~~~~i~~~~~~~~~-------~   77 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAE-------G   77 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C--CCHHHHHHHHHHHTTSTTCCCEEEEEEE-------T
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc--hHHHHHHHHHHHhcCCCCCCeeeeecCC-------C
Confidence            357899999999999999999994 67999999987643322  3578899999999999988888877653       3


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee---cCCCcEEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL---DEHRIAKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~D  593 (747)
                      ...++||||+ +|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||+   +.++.+||+|
T Consensus        78 ~~~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~D  151 (296)
T 4hgt_A           78 DYNVMVMELL-GPSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIID  151 (296)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEECC
T ss_pred             CceEEEEEcc-CCCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEEec
Confidence            4789999999 99999998753  3459999999999999999999999   899999999999999   7889999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh----hh
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA----FL  669 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~----~~  669 (747)
                      ||+++...........     .........++..|++||.+....++.++|||||||++|||++|+.||.....    ..
T Consensus       152 fg~a~~~~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~  226 (296)
T 4hgt_A          152 FGLAKKYRDARTHQHI-----PYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK  226 (296)
T ss_dssp             CTTCEECBCTTTCCBC-----CCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH
T ss_pred             CccceeccCcccCccC-----CCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhh
Confidence            9999776543221110     00111123567788999999888999999999999999999999999874321    11


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ...+......     ...+.....++    ..+.+++.+||+.||++|||+.+|++.|+.+.+..
T Consensus       227 ~~~~~~~~~~-----~~~~~~~~~~~----~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          227 YERISEKKMS-----TPIEVLCKGYP----SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHHHHHHHH-----SCHHHHTTTSC----HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccc-----chhhhhhccCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence            1111110000     00011112223    34889999999999999999999999999887644

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.7e-38  Score=330.66  Aligned_cols=251  Identities=20%  Similarity=0.262  Sum_probs=197.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccch------hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK------YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ++|.+.+.||+|+||.||+|+.. +|+.||||.++....      ...+.+.+|+.++++++||||+++++++...    
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~----   80 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENK----   80 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS----
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCC----
Confidence            56888999999999999999964 699999999875321      2367899999999999999999999999763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC----c
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR----I  588 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----~  588 (747)
                          ...++||||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++    .
T Consensus        81 ----~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~  150 (283)
T 3bhy_A           81 ----TDVVLILELVSGGELFDFLAEK---ESLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPR  150 (283)
T ss_dssp             ----SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCC
T ss_pred             ----CeEEEEEeecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCc
Confidence                4789999999999999999753   458999999999999999999999   8999999999999998877    8


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      +||+|||+++........             ....++..|++||.+....++.++||||||+++|||++|+.||......
T Consensus       151 ~kl~dfg~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  217 (283)
T 3bhy_A          151 IKLIDFGIAHKIEAGNEF-------------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ  217 (283)
T ss_dssp             EEECCCTTCEECC---------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             eEEEecccceeccCCCcc-------------cccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH
Confidence            999999999765432211             0123556788999988888999999999999999999999998755433


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ............     .++......+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       218 ~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~h  266 (283)
T 3bhy_A          218 ETLTNISAVNYD-----FDEEYFSNTS----ELAKDFIRRLLVKDPKRRMTIAQSLEH  266 (283)
T ss_dssp             HHHHHHHTTCCC-----CCHHHHTTCC----HHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred             HHHHHhHhcccC-----CcchhcccCC----HHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence            222111111100     1111112223    348899999999999999999999974

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2.2e-39  Score=364.54  Aligned_cols=249  Identities=19%  Similarity=0.223  Sum_probs=200.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||++...   .......+.+|+++|++++|||||++++++...      
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~------  256 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETK------  256 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS------
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeC------
Confidence            46788999999999999999995 57999999999743   233456788999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++|||||++|+|.+++.... ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus       257 --~~l~lVmEy~~gg~L~~~l~~~~-~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DF  330 (576)
T 2acx_A          257 --DALCLVLTLMNGGDLKFHIYHMG-QAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDL  330 (576)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHSSS-SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             --CEEEEEEEcCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEec
Confidence              48999999999999999987542 3458999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh----hhH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA----FLL  670 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~----~~~  670 (747)
                      |+++........             ...+++..|+|||++....++.++|||||||++|||++|+.||.....    ..+
T Consensus       331 Gla~~~~~~~~~-------------~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i  397 (576)
T 2acx_A          331 GLAVHVPEGQTI-------------KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEV  397 (576)
T ss_dssp             TTCEECCTTCCE-------------ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHH
T ss_pred             ccceecccCccc-------------cccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHH
Confidence            999765432211             113567789999999888899999999999999999999999875421    111


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      .......         ...+    +...+..+.+++.+||+.||.+||     ++.||++
T Consensus       398 ~~~i~~~---------~~~~----p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          398 ERLVKEV---------PEEY----SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             HHHHHHC---------CCCC----CTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             HHHhhcc---------cccC----CccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            1111100         0111    122234488999999999999999     7888875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=2e-38  Score=332.31  Aligned_cols=267  Identities=14%  Similarity=0.142  Sum_probs=205.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++.....  .+.+.+|+.++++++|++++..++++...       ..
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~-------~~   78 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAE-------GD   78 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEE-------TT
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCC-------CC
Confidence            46789999999999999999994 6799999999875432  24688999999999999988888777553       34


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee---cCCCcEEEecc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL---DEHRIAKLSDY  594 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DF  594 (747)
                      ..++||||+ +|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||+   +.++.+||+||
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Df  152 (296)
T 3uzp_A           79 YNVMVMELL-GPSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDF  152 (296)
T ss_dssp             EEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred             ceEEEEEec-CCCHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeC
Confidence            789999999 89999999743  3469999999999999999999999   899999999999999   58899999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh----hhH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA----FLL  670 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~----~~~  670 (747)
                      |+++...........     .........++..|++||.+....++.++|||||||++|||++|+.||.....    ...
T Consensus       153 g~~~~~~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  227 (296)
T 3uzp_A          153 GLAKKYRDARTHQHI-----PYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKY  227 (296)
T ss_dssp             TTCEECBCTTTCCBC-----CCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHH
T ss_pred             CCccccccccccccc-----ccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhh
Confidence            999776543221110     00011223567789999999888899999999999999999999999874221    111


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ..+......     ...+.....+++    .+.+++.+||+.||.+|||+.+|++.|+.+....
T Consensus       228 ~~~~~~~~~-----~~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~  282 (296)
T 3uzp_A          228 ERISEKKMS-----TPIEVLCKGYPS----EFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHHHHHHH-----SCHHHHTTTSCH----HHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             hhhcccccC-----CchHHHHhhCCH----HHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence            111111000     000111122333    4889999999999999999999999999886644

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.7e-38  Score=334.17  Aligned_cols=251  Identities=21%  Similarity=0.331  Sum_probs=202.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .+.|.+.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.++++++||||+++++++...        
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------   92 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD--------   92 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEET--------
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC--------
Confidence            35688899999999999999984 568999999997543 34567899999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++++|.+++..    ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        93 ~~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~  165 (303)
T 3a7i_A           93 TKLWIIMEYLGGGSALDLLEP----GPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGV  165 (303)
T ss_dssp             TEEEEEEECCTTEEHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CeEEEEEEeCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeeccc
Confidence            378999999999999999864    358999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ++.........            ....++..|++||.+....++.++|||||||++|||++|+.|+..............
T Consensus       166 ~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  233 (303)
T 3a7i_A          166 AGQLTDTQIKR------------NTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPK  233 (303)
T ss_dssp             CEECBTTBCCB------------CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH
T ss_pred             ceecCcccccc------------CccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhc
Confidence            97654322110            112355678899999888899999999999999999999999876543332222111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ..        .+.....++.    .+.+++.+||+.||.+|||+.|+++..-
T Consensus       234 ~~--------~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~~~~  273 (303)
T 3a7i_A          234 NN--------PPTLEGNYSK----PLKEFVEACLNKEPSFRPTAKELLKHKF  273 (303)
T ss_dssp             SC--------CCCCCSSCCH----HHHHHHHHHCCSSGGGSCCHHHHTTCHH
T ss_pred             CC--------CCCCccccCH----HHHHHHHHHcCCChhhCcCHHHHhhChh
Confidence            11        1112223333    3889999999999999999999987543

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=9e-39  Score=336.08  Aligned_cols=266  Identities=18%  Similarity=0.302  Sum_probs=183.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.++++++||||+++++++...        
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------   85 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVK--------   85 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESS--------
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeec--------
Confidence            46799999999999999999984 578999999986433 23456788999999999999999999999763        


Q ss_pred             ceEEEEEeccCCCCcccccccC-----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          517 NKVFLVYEYIPNGSYRAHLSEN-----CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~-----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                      +..++||||+++|+|.+++...     .....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl  162 (303)
T 2vwi_A           86 DELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGSVQI  162 (303)
T ss_dssp             SCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEE
T ss_pred             CCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCCCEEE
Confidence            3689999999999999988631     123468999999999999999999999   78999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL  670 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~  670 (747)
                      +|||+++...........       .......++..|++||.+.. ..++.++|||||||++|||++|+.||........
T Consensus       163 ~dfg~~~~~~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~  235 (303)
T 2vwi_A          163 ADFGVSAFLATGGDITRN-------KVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV  235 (303)
T ss_dssp             CCCHHHHHCC----------------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH
T ss_pred             EeccchheeccCCCccch-------hhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH
Confidence            999998765432211100       00112345677899998865 5689999999999999999999999876443322


Q ss_pred             HHHHhccCcC-CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          671 NEMASFGSQD-GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       671 ~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......... ......++.....++.    .+.+++.+||+.||.+|||+.|+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~li~~~l~~dp~~Rps~~~ll~h  288 (303)
T 2vwi_A          236 LMLTLQNDPPSLETGVQDKEMLKKYGK----SFRKMISLCLQKDPEKRPTAAELLRH  288 (303)
T ss_dssp             HHHHHTSSCCCTTC-----CCCCCCCH----HHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHHhccCCCccccccccchhhhhhhH----HHHHHHHHHccCChhhCcCHHHHhhC
Confidence            2111111111 1111122222233343    48899999999999999999999863

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.7e-39  Score=342.56  Aligned_cols=261  Identities=18%  Similarity=0.209  Sum_probs=191.6

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchh-cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|.+.+.||+|+||.||+|+. .+++.||||+++..... ....+.+|++++++++||||+++++++...        .
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------~   73 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTE--------K   73 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECS--------S
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeC--------C
Confidence            5788899999999999999995 47899999998743321 112445799999999999999999999763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||++ |+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a  147 (324)
T 3mtl_A           74 SLTLVFEYLD-KDLKQYLDDC--GNIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLA  147 (324)
T ss_dssp             CEEEEEECCS-EEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCGGGEEECTTCCEEECSSSEE
T ss_pred             EEEEEecccc-cCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCHHHEEECCCCCEEEccCccc
Confidence            7899999997 5898888764  3468999999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      +.........            ....++..|+|||++.. ..++.++|||||||++|||++|+.||..... .....+..
T Consensus       148 ~~~~~~~~~~------------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~  215 (324)
T 3mtl_A          148 RAKSIPTKTY------------DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFR  215 (324)
T ss_dssp             ECC------------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred             ccccCCcccc------------ccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            7543221110            11234667889998765 5689999999999999999999999876543 22333322


Q ss_pred             ccCcCCc---ccccc---------ccccC----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQDGR---RRIVD---------PVVLT----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~~~---~~~~d---------~~~~~----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......   .....         +....    ...+.....+.+++.+||+.||.+|||+.|+++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          216 ILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             HHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             HhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            2111100   00000         00000    0011223457899999999999999999999864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=8.4e-39  Score=336.25  Aligned_cols=251  Identities=19%  Similarity=0.269  Sum_probs=195.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||.||+|+.. +++.||+|++........+.+.+|++++++++||||+++++++...        .
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------~   89 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHD--------G   89 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC---------
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeC--------C
Confidence            467889999999999999999964 6899999999866666678899999999999999999999999763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        90 ~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  164 (302)
T 2j7t_A           90 KLWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVS  164 (302)
T ss_dssp             CEEEEEECCTTEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred             eEEEEEEeCCCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCC
Confidence            789999999999999988653  3458999999999999999999999   78999999999999999999999999997


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-H
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-N  671 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~  671 (747)
                      ..........            ....++..|++||.+.     ...++.++|||||||++|||++|+.|+........ .
T Consensus       165 ~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~  232 (302)
T 2j7t_A          165 AKNLKTLQKR------------DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL  232 (302)
T ss_dssp             HHHHHHHHC-----------------CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH
T ss_pred             cccccccccc------------ccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence            5432211100            0123556788888873     56788999999999999999999999875443222 1


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .+.... .   ....       .+......+.+++.+||+.||.+|||+.|+++
T Consensus       233 ~~~~~~-~---~~~~-------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          233 KIAKSD-P---PTLL-------TPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             HHHHSC-C---CCCS-------SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             HHhccC-C---cccC-------CccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            121110 0   0000       11222334889999999999999999999975

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=3.3e-38  Score=340.67  Aligned_cols=256  Identities=23%  Similarity=0.333  Sum_probs=200.0

Q ss_pred             HHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--------hcHHHHHHHHHHHhcC-CCCCcceeee
Q 044236          434 ELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--------YSIQNLKVRLDFLSKL-QHPHLVSLLG  503 (747)
Q Consensus       434 ~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--------~~~~~~~~E~~~l~~l-~H~nIv~l~g  503 (747)
                      ......++|++.+.||+|+||.||+|+. .+|+.||||+++....        ...+.+.+|+.+++++ +||||+++++
T Consensus        88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  167 (365)
T 2y7j_A           88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID  167 (365)
T ss_dssp             HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence            3445567899999999999999999996 4799999999874321        1245678999999999 7999999999


Q ss_pred             eeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee
Q 044236          504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL  583 (747)
Q Consensus       504 ~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  583 (747)
                      ++...        ...++||||+++|+|.+++...   ..+++..+..++.||+.||.|||+   .+|+||||||+||++
T Consensus       168 ~~~~~--------~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~  233 (365)
T 2y7j_A          168 SYESS--------SFMFLVFDLMRKGELFDYLTEK---VALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILL  233 (365)
T ss_dssp             EEEBS--------SEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEE
T ss_pred             EEeeC--------CEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEE
Confidence            98763        4789999999999999998753   458999999999999999999999   799999999999999


Q ss_pred             cCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec------cCCCcCCceeehhHHHHHHhh
Q 044236          584 DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI------QRTKLEDDVYNFGFILLESLV  657 (747)
Q Consensus       584 d~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------~~~s~k~DVwSfGvvl~Ellt  657 (747)
                      +.++.+||+|||+++.+......             ....++..|++||++..      ..++.++|||||||++|||++
T Consensus       234 ~~~~~ikl~DfG~~~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~  300 (365)
T 2y7j_A          234 DDNMQIRLSDFGFSCHLEPGEKL-------------RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLA  300 (365)
T ss_dssp             CTTCCEEECCCTTCEECCTTCCB-------------CCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCcccccCCCccc-------------ccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHH
Confidence            99999999999999765432211             11345677889998753      357889999999999999999


Q ss_pred             CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          658 GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       658 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      |+.||..................    . ........+    ..+.+++.+||+.||++|||+.|+++
T Consensus       301 g~~pf~~~~~~~~~~~i~~~~~~----~-~~~~~~~~~----~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          301 GSPPFWHRRQILMLRMIMEGQYQ----F-SSPEWDDRS----STVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             SSCSSCCSSHHHHHHHHHHTCCC----C-CHHHHSSSC----HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHhCCCC----C-CCcccccCC----HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            99998764433222211111100    0 000111223    34889999999999999999999986

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3.3e-38  Score=337.90  Aligned_cols=271  Identities=15%  Similarity=0.219  Sum_probs=203.5

Q ss_pred             HHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhc--CCCCCcceeeeeeeccCCCCC
Q 044236          436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK--LQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       436 ~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~--l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ....++|.+.+.||+|+||.||+|+. +|+.||||++...   ....+.+|.+++..  ++||||+++++++....    
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~----  109 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN----  109 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC----
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC----
Confidence            44567899999999999999999998 4899999998633   34567788888887  79999999999987632    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCCcccCCCCCCceeecC
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH--------SSVISGSFSNRLTTNNILLDE  585 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivHrDlk~~NILld~  585 (747)
                      ......++||||+++|+|.+++...    .+++..+..++.|++.||+|||        +   .+|+||||||+|||++.
T Consensus       110 ~~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~NIll~~  182 (342)
T 1b6c_B          110 GTWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGK---PAIAHRDLKSKNILVKK  182 (342)
T ss_dssp             SSCCCEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB---CEEECSCCSGGGEEECT
T ss_pred             CccceeEEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCeeeCCCCHHHEEECC
Confidence            1123789999999999999999752    5899999999999999999999        6   78999999999999999


Q ss_pred             CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc------CCCcCCceeehhHHHHHHhhC-
Q 044236          586 HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ------RTKLEDDVYNFGFILLESLVG-  658 (747)
Q Consensus       586 ~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~s~k~DVwSfGvvl~Elltg-  658 (747)
                      ++.+||+|||+++...........        ......++..|+|||.+...      .++.++|||||||++|||+|| 
T Consensus       183 ~~~~kL~Dfg~~~~~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~  254 (342)
T 1b6c_B          183 NGTCCIADLGLAVRHDSATDTIDI--------APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRC  254 (342)
T ss_dssp             TSCEEECCCTTCEEEETTTTEEEE--------CCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CCCEEEEECCCceecccccccccc--------ccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhcc
Confidence            999999999999765433211100        00112456678899987654      233689999999999999999 


Q ss_pred             ---------CCCCCCChh--hhHHHHHhccCcCCccccccccccCC-CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          659 ---------PIVTGKGEA--FLLNEMASFGSQDGRRRIVDPVVLTT-CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       659 ---------~~p~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                               ..||.....  .....+........    ..+.+... ...+....+.+++.+||+.||++|||+.||+++
T Consensus       255 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          255 SIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK----LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSC----CCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             CcCCcccccccCccccCcCcccHHHHHHHHHHHH----hCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence                     566653211  01111111111111    11111111 123566779999999999999999999999999


Q ss_pred             HHHHHHH
Q 044236          727 LQYAAQV  733 (747)
Q Consensus       727 L~~~~~~  733 (747)
                      |+.+.+.
T Consensus       331 L~~i~~~  337 (342)
T 1b6c_B          331 LSQLSQQ  337 (342)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988653

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=2.6e-38  Score=341.59  Aligned_cols=273  Identities=16%  Similarity=0.210  Sum_probs=201.1

Q ss_pred             CHHHHHHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc-----------hhcHHHHHHHHHHHhcCCCCCcc
Q 044236          431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-----------KYSIQNLKVRLDFLSKLQHPHLV  499 (747)
Q Consensus       431 ~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~-----------~~~~~~~~~E~~~l~~l~H~nIv  499 (747)
                      ..+++....++|.+.+.||+|+||.||+|+..+|+.||||++....           ....+.+.+|++++++++||||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            3567788889999999999999999999998789999999986421           11237789999999999999999


Q ss_pred             eeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCC
Q 044236          500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN  579 (747)
Q Consensus       500 ~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~  579 (747)
                      ++++++...+   .......++||||++ |+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+
T Consensus        93 ~~~~~~~~~~---~~~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~  163 (362)
T 3pg1_A           93 GLRDIFVHFE---EPAMHKLYLVTELMR-TDLAQVIHDQ--RIVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPG  163 (362)
T ss_dssp             CCSEEEEECC---TTTCCEEEEEEECCS-EEHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred             ceeeeEEecc---CCCcceEEEEEccCC-CCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChH
Confidence            9999987633   122457899999998 6888888653  4469999999999999999999999   78999999999


Q ss_pred             ceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhC
Q 044236          580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVG  658 (747)
Q Consensus       580 NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg  658 (747)
                      |||++.++.+||+|||+++........             ....++..|++||.+.. ..++.++|||||||++|||++|
T Consensus       164 NIl~~~~~~~kl~Dfg~~~~~~~~~~~-------------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g  230 (362)
T 3pg1_A          164 NILLADNNDITICDFNLAREDTADANK-------------THYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNR  230 (362)
T ss_dssp             GEEECTTCCEEECCTTC----------------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHS
T ss_pred             HEEEcCCCCEEEEecCccccccccccc-------------ceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhC
Confidence            999999999999999999744322111             11245567889998766 6789999999999999999999


Q ss_pred             CCCCCCChh-hhHHHHHhccCcCCc-------------------cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC
Q 044236          659 PIVTGKGEA-FLLNEMASFGSQDGR-------------------RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP  718 (747)
Q Consensus       659 ~~p~~~~~~-~~~~~~~~~~~~~~~-------------------~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  718 (747)
                      +.||..... .....+.........                   ...... ......+.....+.+++.+||+.||.+||
T Consensus       231 ~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  309 (362)
T 3pg1_A          231 KALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPAR-AWTAVVPTADPVALDLIAKMLEFNPQRRI  309 (362)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCC-CHHHHSTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             CCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChh-hHHhhCCCCCHHHHHHHHHHhcCChhhCC
Confidence            999875432 222222221111100                   000000 00001112234588999999999999999


Q ss_pred             CHHHHHHH
Q 044236          719 SFEDVLWN  726 (747)
Q Consensus       719 s~~evl~~  726 (747)
                      |+.|++++
T Consensus       310 t~~ell~h  317 (362)
T 3pg1_A          310 STEQALRH  317 (362)
T ss_dssp             CHHHHHTS
T ss_pred             CHHHHHcC
Confidence            99999864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.1e-39  Score=342.81  Aligned_cols=265  Identities=19%  Similarity=0.261  Sum_probs=192.2

Q ss_pred             HHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchh-----cHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKY-----SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      ...++|++.+.||+|+||.||+|+. .+|+.||||+++.....     ..+.+.+|++++++++||||+++++++...  
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--   84 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK--   84 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT--
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeC--
Confidence            3457899999999999999999995 56999999999743211     124678999999999999999999998763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  590 (747)
                            ...++||||+++ +|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+|
T Consensus        85 ------~~~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~k  152 (346)
T 1ua2_A           85 ------SNISLVFDFMET-DLEVIIKDN--SLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLK  152 (346)
T ss_dssp             ------TCCEEEEECCSE-EHHHHHTTC--CSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEE
T ss_pred             ------CceEEEEEcCCC-CHHHHHHhc--CcCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEE
Confidence                  368999999986 888888654  3468889999999999999999999   7899999999999999999999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-h
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-F  668 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~  668 (747)
                      |+|||+++........            .....++..|+|||++.. ..++.++|||||||++|||++|.+|+..... .
T Consensus       153 l~Dfg~a~~~~~~~~~------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~  220 (346)
T 1ua2_A          153 LADFGLAKSFGSPNRA------------YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD  220 (346)
T ss_dssp             ECCCGGGSTTTSCCCC------------CCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             EEecccceeccCCccc------------CCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH
Confidence            9999999765322111            011245677899998865 4589999999999999999999888865432 2


Q ss_pred             hHHHHHhccCcCCcc------ccccccc---cCCC-----CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          669 LLNEMASFGSQDGRR------RIVDPVV---LTTC-----SQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~------~~~d~~~---~~~~-----~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .+..+..........      ...+...   ....     .......+.+++.+||+.||.+|||+.|++++-
T Consensus       221 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~  293 (346)
T 1ua2_A          221 QLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK  293 (346)
T ss_dssp             HHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred             HHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcCh
Confidence            333322211111000      0000000   0000     122234589999999999999999999998753

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=2.3e-38  Score=328.36  Aligned_cols=252  Identities=19%  Similarity=0.275  Sum_probs=197.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.++++++||||+++++++...        
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------   77 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG--------   77 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEET--------
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcC--------
Confidence            46789999999999999999995 478999999997543 23457789999999999999999999998763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++|+|.+++..   ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~  151 (276)
T 2yex_A           78 NIQYLFLEYCSGGELFDRIEP---DIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGL  151 (276)
T ss_dssp             TEEEEEEECCTTEEGGGGSBT---TTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             CEEEEEEEecCCCcHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCC
Confidence            478999999999999999975   3468999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChhh--hHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEAF--LLNEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~~--~~~~~  673 (747)
                      ++...........          ....++..|++||.+....+ +.++|||||||++|||++|+.||......  ....+
T Consensus       152 ~~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~  221 (276)
T 2yex_A          152 ATVFRYNNRERLL----------NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDW  221 (276)
T ss_dssp             CEECEETTEECCB----------CCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHH
T ss_pred             ccccCCCcchhcc----------cCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHh
Confidence            9765432211100          01234567888998876654 77899999999999999999998754322  11111


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...   ..   ...  ....+    ...+.+++.+||+.||.+|||+.|+++.
T Consensus       222 ~~~---~~---~~~--~~~~~----~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (276)
T 2yex_A          222 KEK---KT---YLN--PWKKI----DSAPLALLHKILVENPSARITIPDIKKD  262 (276)
T ss_dssp             HTT---CT---TST--TGGGS----CHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             hhc---cc---ccC--chhhc----CHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence            111   00   000  01122    3347889999999999999999999863

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=9.2e-39  Score=332.69  Aligned_cols=257  Identities=19%  Similarity=0.295  Sum_probs=200.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC------
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ------  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~------  511 (747)
                      .++|++.+.||+|+||.||+|+.. +|+.||||+++...    +.+.+|++++++++||||+++++++......      
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence            467899999999999999999964 79999999997543    3467899999999999999999988541100      


Q ss_pred             --CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcE
Q 044236          512 --DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIA  589 (747)
Q Consensus       512 --~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~  589 (747)
                        ........++||||+++|+|.+++.... ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEE
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEEcCCCCE
Confidence              0011346899999999999999997532 3468999999999999999999999   799999999999999999999


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL  669 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~  669 (747)
                      ||+|||+++........             ....++..|++||.+....++.++|||||||++|||++|..|+.... ..
T Consensus       162 kl~Dfg~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-~~  227 (284)
T 2a19_B          162 KIGDFGLVTSLKNDGKR-------------TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS-KF  227 (284)
T ss_dssp             EECCCTTCEESSCCSCC-------------CCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH-HH
T ss_pred             EECcchhheeccccccc-------------cccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH-HH
Confidence            99999998765432111             01235667899999988889999999999999999999987763211 11


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .....            +..+...++.    .+.+++.+||+.||.+|||+.|+++.|+.....
T Consensus       228 ~~~~~------------~~~~~~~~~~----~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~  275 (284)
T 2a19_B          228 FTDLR------------DGIISDIFDK----KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS  275 (284)
T ss_dssp             HHHHH------------TTCCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred             HHHhh------------cccccccCCH----HHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence            11111            0111122333    378899999999999999999999999877543

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.1e-39  Score=354.35  Aligned_cols=251  Identities=12%  Similarity=0.108  Sum_probs=186.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHH---HHHhcCCCCCcceeee-------e
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRL---DFLSKLQHPHLVSLLG-------H  504 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~---~~l~~l~H~nIv~l~g-------~  504 (747)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||++...   .....+.+.+|+   +++++++|||||++++       +
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46788899999999999999994 67999999999742   334567889999   4556668999999994       4


Q ss_pred             eeccCCC------CCCCC---ceEEEEEeccCCCCcccccccCC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 044236          505 CIESGSQ------DDSNT---NKVFLVYEYIPNGSYRAHLSENC----PENVLKWSDRLAILIGVAKAVHFLHSSVISGS  571 (747)
Q Consensus       505 ~~~~~~~------~~~~~---~~~~lv~Ey~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i  571 (747)
                      +...+..      .....   ...++||||+ +|+|.+++....    ....++|..+..|+.||++||+|||+   .+|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh---CCe
Confidence            3332100      00000   0378999999 689999997531    11235578889999999999999999   789


Q ss_pred             ccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-----------CCC
Q 044236          572 FSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-----------RTK  640 (747)
Q Consensus       572 vHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----------~~s  640 (747)
                      +||||||+|||++.++.+||+|||+++......               ...++ ..|+|||++...           .++
T Consensus       228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~---------------~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~  291 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARV---------------VSSVS-RGFEPPELEARRATISYHRDRRTLMT  291 (377)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTCEE---------------ECCCC-TTCCCHHHHHHHTSTHHHHCCEEECC
T ss_pred             ecCCCCHHHEEEcCCCCEEEEechhheecCCcc---------------cCCCC-cCccChhhhcccccccccccccccCC
Confidence            999999999999999999999999997533211               01234 678999999887           899


Q ss_pred             cCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH
Q 044236          641 LEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF  720 (747)
Q Consensus       641 ~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  720 (747)
                      .++|||||||++|||++|+.||.......           ....+..  ....+++    .+.+++.+||+.||++|||+
T Consensus       292 ~~~DvwSlG~il~elltg~~Pf~~~~~~~-----------~~~~~~~--~~~~~~~----~~~~li~~~L~~dp~~Rpt~  354 (377)
T 3byv_A          292 FSFDAWALGLVIYWIWCADLPITKDAALG-----------GSEWIFR--SCKNIPQ----PVRALLEGFLRYPKEDRLLP  354 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCC------C-----------CSGGGGS--SCCCCCH----HHHHHHHHHTCSSGGGCCCH
T ss_pred             hhhhHHHHHHHHHHHHHCCCCCccccccc-----------chhhhhh--hccCCCH----HHHHHHHHHcCCCchhCCCH
Confidence            99999999999999999999986432110           0001111  0122333    48899999999999999999


Q ss_pred             HHHHHH
Q 044236          721 EDVLWN  726 (747)
Q Consensus       721 ~evl~~  726 (747)
                      .|+++.
T Consensus       355 ~e~l~h  360 (377)
T 3byv_A          355 LQAMET  360 (377)
T ss_dssp             HHHHTS
T ss_pred             HHHhhC
Confidence            999863

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=9.1e-39  Score=334.06  Aligned_cols=261  Identities=18%  Similarity=0.238  Sum_probs=194.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC--CCc--EEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE--NGT--YVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~--~g~--~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|++.+.||+|+||.||+|++.  +++  .||||+++..   .....+.+.+|++++++++||||+++++++...   
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---   93 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP---   93 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC---
Confidence            357889999999999999999852  333  6899998743   234457889999999999999999999998752   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                            ..++||||+++|+|.+++...  ...+++..+..++.|+++||.|||+   .+|+||||||+||+++.++.+||
T Consensus        94 ------~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl  162 (291)
T 1u46_A           94 ------PMKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKI  162 (291)
T ss_dssp             ------SCEEEEECCTTCBHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEE
T ss_pred             ------CceeeEecccCCCHHHHHHhc--cCCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEE
Confidence                  378999999999999998754  3458999999999999999999999   89999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLL  670 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~  670 (747)
                      +|||+++...........         .....++..|++||.+....++.++|||||||++|||++ |+.||........
T Consensus       163 ~Dfg~~~~~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~  233 (291)
T 1u46_A          163 GDFGLMRALPQNDDHYVM---------QEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQI  233 (291)
T ss_dssp             CCCTTCEECCC-CCEEEC--------------CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH
T ss_pred             ccccccccccccccchhh---------hccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHH
Confidence            999999765432211110         001223446889998888888999999999999999999 9999875543322


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .......  ..     .......++    ..+.+++.+||+.||.+|||+.++++.|+.+...
T Consensus       234 ~~~~~~~--~~-----~~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          234 LHKIDKE--GE-----RLPRPEDCP----QDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             HHHHHTS--CC-----CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             HHHHHcc--CC-----CCCCCcCcC----HHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence            2211111  00     011112233    3488999999999999999999999999877543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=6.3e-38  Score=327.63  Aligned_cols=249  Identities=21%  Similarity=0.235  Sum_probs=193.2

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      |.+.+.||+|+||.||+|.. .++..||+|.+...  .....+.+.+|+.++++++||||+++++++....    .....
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~~~  103 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV----KGKKC  103 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES----SSCEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecccc----CCCce
Confidence            66778899999999999985 56889999998753  2345677899999999999999999999987532    12357


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceeec-CCCcEEEeccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISG--SFSNRLTTNNILLD-EHRIAKLSDYG  595 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--ivHrDlk~~NILld-~~~~~kl~DFG  595 (747)
                      .++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+  |+||||||+|||++ .++.+||+|||
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg  177 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLG  177 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTT
T ss_pred             EEEEEEecCCCCHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHc---CCCCEEECCCCHHHEEEECCCCCEEEeeCC
Confidence            89999999999999999753   458999999999999999999999   55  99999999999998 78999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~  674 (747)
                      +++.......              ....++..|++||.+. ..++.++|||||||++|||++|+.||..... .......
T Consensus       178 ~~~~~~~~~~--------------~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~  242 (290)
T 1t4h_A          178 LATLKRASFA--------------KAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRV  242 (290)
T ss_dssp             GGGGCCTTSB--------------EESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHH
T ss_pred             Cccccccccc--------------ccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHH
Confidence            9864332211              1123566788899775 5689999999999999999999999875322 2211111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..   ...    .+......+    ..+.+++.+||+.||.+|||+.|++++
T Consensus       243 ~~---~~~----~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~h  283 (290)
T 1t4h_A          243 TS---GVK----PASFDKVAI----PEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             TT---TCC----CGGGGGCCC----HHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hc---cCC----ccccCCCCC----HHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            11   000    011111222    348899999999999999999999863

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=3.4e-38  Score=354.80  Aligned_cols=251  Identities=20%  Similarity=0.241  Sum_probs=194.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .+.|++.+.||+|+||.||+|+. .+++.||||++....  ......+.+|+.+++.++|||||+++++|...       
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-------  108 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDK-------  108 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECS-------
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-------
Confidence            45689999999999999999995 468999999997532  33456788999999999999999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---CCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---HRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~  592 (747)
                       ...++|||||++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.   ++.+||+
T Consensus       109 -~~~~lv~e~~~~g~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~  181 (494)
T 3lij_A          109 -RNYYLVMECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIV  181 (494)
T ss_dssp             -SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred             -CEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEE
Confidence             4789999999999999988753   458999999999999999999999   89999999999999976   4569999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+++........             ...++++.|+|||++. ..++.++|||||||++|||++|..||.......+..
T Consensus       182 DfG~a~~~~~~~~~-------------~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~  247 (494)
T 3lij_A          182 DFGLSAVFENQKKM-------------KERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILR  247 (494)
T ss_dssp             CCTTCEECBTTBCB-------------CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             ECCCCeECCCCccc-------------cccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            99999765432211             1124677899999875 568999999999999999999999997654433222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........     .+......+++    .+.+++.+||+.||.+|||+.|++++
T Consensus       248 ~i~~~~~~-----~~~~~~~~~s~----~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          248 KVEKGKYT-----FDSPEWKNVSE----GAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             HHHHTCCC-----CCSGGGTTSCH----HHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             HHHhCCCC-----CCchhcccCCH----HHHHHHHHHCCCChhhCccHHHHhcC
Confidence            22111110     11111122333    48899999999999999999999864

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-38  Score=343.49  Aligned_cols=262  Identities=15%  Similarity=0.218  Sum_probs=193.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|++++++++||||+++++++...+..  ..
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~--~~  101 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETL--DD  101 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSST--TT
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcc--cc
Confidence            46789999999999999999995 57999999998642  233456788999999999999999999998764211  11


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+ +++|.+++..    ..+++..+..++.|+++||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       102 ~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg  173 (367)
T 1cm8_A          102 FTDFYLVMPFM-GTDLGKLMKH----EKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFG  173 (367)
T ss_dssp             CCCCEEEEECC-SEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             CceEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEEEEeee
Confidence            24679999999 7899999875    358999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~  673 (747)
                      +++.......               ...++..|+|||++.. ..++.++||||+||++|||++|+.||...+ ...+..+
T Consensus       174 ~a~~~~~~~~---------------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i  238 (367)
T 1cm8_A          174 LARQADSEMT---------------GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEI  238 (367)
T ss_dssp             TCEECCSSCC---------------SSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             cccccccccC---------------cCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9976432110               1234567889998876 679999999999999999999999987543 2333332


Q ss_pred             HhccCcCCc------------------cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGR------------------RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~------------------~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........                  ........ ..........+.+++.+||+.||.+|||+.|++++
T Consensus       239 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          239 MKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDF-ASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             HHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCG-GGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCH-HHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence            221111000                  00000000 11112234458899999999999999999999874

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=8.6e-39  Score=340.88  Aligned_cols=262  Identities=20%  Similarity=0.294  Sum_probs=194.8

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++....  ....+.+.+|+.++++++||||++++++|...       
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-------   96 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK-------   96 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-------
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC-------
Confidence            46789999999999999999995 459999999986433  23345678999999999999999999999873       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+++++|.+++..   ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        97 -~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg  169 (331)
T 4aaa_A           97 -KRWYLVFEFVDHTILDDLELF---PNGLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFG  169 (331)
T ss_dssp             -TEEEEEEECCSEEHHHHHHHS---TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred             -CEEEEEEecCCcchHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCC
Confidence             478999999999999887654   3458999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      +++..........            ...++..|++||.+... .++.++|||||||++|||++|+.||..... .....+
T Consensus       170 ~~~~~~~~~~~~~------------~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  237 (331)
T 4aaa_A          170 FARTLAAPGEVYD------------DEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHI  237 (331)
T ss_dssp             TC------------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             CceeecCCccccC------------CCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHH
Confidence            9976543221110            12345678899988765 689999999999999999999999875432 222222


Q ss_pred             HhccCc------------CCccccccccccCC-----CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQ------------DGRRRIVDPVVLTT-----CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~------------~~~~~~~d~~~~~~-----~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......            ........+.....     ..+.....+.+++.+||+.||++|||+.|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          238 MMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             HHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             HHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            111000            00000000111000     011234558999999999999999999999864

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=2.9e-38  Score=329.15  Aligned_cols=248  Identities=18%  Similarity=0.252  Sum_probs=199.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++....   ....+.+.+|++++++++||||+++++++...      
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~------   86 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDR------   86 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS------
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcC------
Confidence            36789999999999999999995 468899999987432   23346789999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus        87 --~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Df  158 (284)
T 2vgo_A           87 --KRIYLMLEFAPRGELYKELQKH---GRFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADF  158 (284)
T ss_dssp             --SEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCC
T ss_pred             --CEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEecc
Confidence              4789999999999999998763   358999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |++........              ....++..|++||.+....++.++|||||||++|||++|+.||............
T Consensus       159 g~~~~~~~~~~--------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  224 (284)
T 2vgo_A          159 GWSVHAPSLRR--------------RTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRI  224 (284)
T ss_dssp             TTCEECSSSCB--------------CCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH
T ss_pred             cccccCccccc--------------ccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHH
Confidence            99865432111              0123566788999988888999999999999999999999998754433222111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ...         +......++    ..+.+++.+||+.||.+|||+.|+++.-
T Consensus       225 ~~~---------~~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~~ll~h~  264 (284)
T 2vgo_A          225 VNV---------DLKFPPFLS----DGSKDLISKLLRYHPPQRLPLKGVMEHP  264 (284)
T ss_dssp             HTT---------CCCCCTTSC----HHHHHHHHHHSCSSGGGSCCHHHHHTCH
T ss_pred             hcc---------ccCCCCcCC----HHHHHHHHHHhhcCHhhCCCHHHHhhCH
Confidence            110         111112223    3488999999999999999999999754

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=4.8e-38  Score=352.97  Aligned_cols=250  Identities=19%  Similarity=0.237  Sum_probs=197.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...  .......+.+|++++++++|||||++++++...       
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-------   93 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-------   93 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-------
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcC-------
Confidence            46799999999999999999995 57999999999743  234567889999999999999999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec---CCCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD---EHRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl~  592 (747)
                       ...++|||||++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++   .++.+||+
T Consensus        94 -~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~  166 (486)
T 3mwu_A           94 -SSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKII  166 (486)
T ss_dssp             -SEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEEC
T ss_pred             -CEEEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEE
Confidence             4789999999999999988753   458999999999999999999999   8899999999999995   56689999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~  671 (747)
                      |||+++.........             ...+++.|+|||++.. .++.++||||+||++|||++|..||....... +.
T Consensus       167 Dfg~a~~~~~~~~~~-------------~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~  232 (486)
T 3mwu_A          167 DFGLSTCFQQNTKMK-------------DRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILK  232 (486)
T ss_dssp             SCSCTTTBCCC-----------------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             ECCcCeECCCCCccC-------------CCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            999997654322111             1235677889998864 69999999999999999999999987554332 22


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+... ...     .+......+    +..+.+++.+||+.||.+|||+.|++++
T Consensus       233 ~i~~~-~~~-----~~~~~~~~~----s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          233 RVETG-KYA-----FDLPQWRTI----SDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             HHHHT-CCC-----SCSGGGGGS----CHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             HHHhC-CCC-----CCCcccCCC----CHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            22221 110     011111222    3348899999999999999999999875

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.1e-38  Score=347.12  Aligned_cols=268  Identities=15%  Similarity=0.193  Sum_probs=194.0

Q ss_pred             HHhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC---
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD---  512 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~---  512 (747)
                      ...++|++.+.||+|+||.||+|+ ..+|+.||||++.....    ...+|+++|+.++|||||+++++|...+...   
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~   79 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP   79 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence            456789999999999999999998 46799999999874332    2247999999999999999999987633100   


Q ss_pred             ---------------------------CCCCceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhh
Q 044236          513 ---------------------------DSNTNKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLH  564 (747)
Q Consensus       513 ---------------------------~~~~~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH  564 (747)
                                                 .......++||||++ |+|.+.+... .....+++..+..++.|+++||+|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  158 (383)
T 3eb0_A           80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH  158 (383)
T ss_dssp             ------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                       012345899999998 5887776531 12456999999999999999999999


Q ss_pred             cCCCCCcccCCCCCCceeec-CCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcC
Q 044236          565 SSVISGSFSNRLTTNNILLD-EHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLE  642 (747)
Q Consensus       565 ~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k  642 (747)
                      +   .+|+||||||+|||++ .++.+||+|||+++.........             ...++..|+|||++... .++.+
T Consensus       159 ~---~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~-------------~~~~t~~y~aPE~~~~~~~~~~~  222 (383)
T 3eb0_A          159 S---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSV-------------AYICSRFYRAPELMLGATEYTPS  222 (383)
T ss_dssp             T---TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCC-------------CCCCCSSCCCHHHHTTCSSCCTH
T ss_pred             H---CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCc-------------CcccCCCccCHHHhcCCCCCCcc
Confidence            9   8999999999999998 68999999999997654322110             12345678899987654 48999


Q ss_pred             CceeehhHHHHHHhhCCCCCCCCh-hhhHHHHHhccCcCCc---------------cccccccccCCCCHHHHHHHHHHH
Q 044236          643 DDVYNFGFILLESLVGPIVTGKGE-AFLLNEMASFGSQDGR---------------RRIVDPVVLTTCSQESLSIVVSIT  706 (747)
Q Consensus       643 ~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~~~~~~~~~---------------~~~~d~~~~~~~~~~~~~~~~~l~  706 (747)
                      +|||||||++|||++|+.||.... .+.+..+.........               ............+...+..+.+++
T Consensus       223 ~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  302 (383)
T 3eb0_A          223 IDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLL  302 (383)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHH
Confidence            999999999999999999987543 3333333322111100               000000000111222344589999


Q ss_pred             hHccCCCCCCCCCHHHHHH
Q 044236          707 NKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       707 ~~Cl~~dP~~RPs~~evl~  725 (747)
                      .+||+.||.+|||+.|+++
T Consensus       303 ~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          303 EQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             HHHCCSSGGGSCCHHHHHT
T ss_pred             HHHccCChhhCCCHHHHhc
Confidence            9999999999999999985

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=4.2e-38  Score=335.36  Aligned_cols=256  Identities=15%  Similarity=0.223  Sum_probs=193.7

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||.||+|+ ..+++.||||+++..   ..+.+.+|++++++++ ||||+++++++....      ..
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~------~~  106 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPV------SR  106 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTT------TC
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCC------CC
Confidence            678999999999999999998 467999999998743   3467889999999997 999999999987632      34


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-cEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGl  596 (747)
                      ..++||||+++++|.++++.      +++..+..++.|++.||+|||+   .+|+||||||+|||++.++ .+||+|||+
T Consensus       107 ~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~  177 (330)
T 3nsz_A          107 TPALVFEHVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGL  177 (330)
T ss_dssp             CEEEEEECCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             ceEEEEeccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCC
Confidence            78999999999999998753      7889999999999999999999   8999999999999999776 899999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCCh--hhhHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGE--AFLLNEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~--~~~~~~~  673 (747)
                      ++.........             ...++..|++||.+.. ..++.++|||||||++|||++|+.|+....  ...+..+
T Consensus       178 a~~~~~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~  244 (330)
T 3nsz_A          178 AEFYHPGQEYN-------------VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRI  244 (330)
T ss_dssp             CEECCTTCCCC-------------SCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHH
T ss_pred             ceEcCCCCccc-------------cccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHH
Confidence            97654322110             1234556888888766 668999999999999999999998885322  1222111


Q ss_pred             HhccCcCC-----------------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDG-----------------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~-----------------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........                       .....+..............+.+++.+||+.||.+|||+.|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          245 AKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             HHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             HHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            11000000                       000000000111112234558999999999999999999999863

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=2.1e-38  Score=355.80  Aligned_cols=254  Identities=15%  Similarity=0.181  Sum_probs=199.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|.+.+.||+|+||+||+|+. .+|+.||||++....   ....+.+.+|++++++++|||||++++++...      
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~------  257 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETK------  257 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS------
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeC------
Confidence            36788899999999999999996 569999999997432   23456788999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ...++||||+++|+|.+++.... ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus       258 --~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~D  332 (543)
T 3c4z_A          258 --TDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISD  332 (543)
T ss_dssp             --SEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECC
T ss_pred             --CEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEee
Confidence              47999999999999999887542 13469999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~  672 (747)
                      ||+++.........            ...++++.|+|||++....++.++|||||||++|||+||+.||...... ....
T Consensus       333 FGla~~~~~~~~~~------------~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~  400 (543)
T 3c4z_A          333 LGLAVELKAGQTKT------------KGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKE  400 (543)
T ss_dssp             CTTCEECCTTCCCB------------CCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHH
T ss_pred             cceeeeccCCCccc------------ccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHH
Confidence            99997654322110            1135678899999999889999999999999999999999999753211 1111


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH-----HHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF-----EDVLW  725 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~-----~evl~  725 (747)
                      +.......      ....+..++    ..+.+++.+||+.||.+||++     .+|.+
T Consensus       401 ~~~~i~~~------~~~~p~~~s----~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          401 LKQRVLEQ------AVTYPDKFS----PASKDFCEALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             HHHHHHHC------CCCCCTTSC----HHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             HHHHHhhc------ccCCCcccC----HHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence            11100000      011112233    348899999999999999975     56653

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.6e-38  Score=339.33  Aligned_cols=250  Identities=18%  Similarity=0.247  Sum_probs=200.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|.+.+.||+|+||.||+++. .+++.||+|++...   +....+.+.+|+.++++++||||+++++++.+.      
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~------  113 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN------  113 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS------
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC------
Confidence            35788899999999999999995 45899999998743   234456788999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++++|.+++...   ..+++..+..++.|+++||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus       114 --~~~~lv~e~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Df  185 (335)
T 2owb_A          114 --DFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDF  185 (335)
T ss_dssp             --SEEEEEECCCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCC
T ss_pred             --CeEEEEEecCCCCCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeec
Confidence              4789999999999999988753   458999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+++.........            ....++..|++||.+....++.++|||||||++|||++|+.||............
T Consensus       186 g~~~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  253 (335)
T 2owb_A          186 GLATKVEYDGERK------------KVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI  253 (335)
T ss_dssp             TTCEECCSTTCCB------------CCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH
T ss_pred             cCceecccCcccc------------cccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHH
Confidence            9997654221110            1124566789999998888999999999999999999999999765432221111


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ....         ..+...++.    .+.+++.+||+.||++|||+.|+++.-
T Consensus       254 ~~~~---------~~~~~~~~~----~~~~li~~~l~~dp~~Rps~~ell~~~  293 (335)
T 2owb_A          254 KKNE---------YSIPKHINP----VAASLIQKMLQTDPTARPTINELLNDE  293 (335)
T ss_dssp             HHTC---------CCCCTTSCH----HHHHHHHHHTCSSGGGSCCGGGGGGSH
T ss_pred             hcCC---------CCCCccCCH----HHHHHHHHHccCChhHCcCHHHHhcCc
Confidence            1110         011122233    478899999999999999999999753

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2e-38  Score=332.15  Aligned_cols=250  Identities=18%  Similarity=0.248  Sum_probs=200.1

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|.+.+.||+|+||.||+|+. .+++.||+|.+...   +....+.+.+|+.++++++||||+++++++...       
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-------   87 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN-------   87 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS-------
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccC-------
Confidence            5688899999999999999995 45899999998743   234456788999999999999999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++||||+++++|.+++...   ..+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        88 -~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg  160 (294)
T 2rku_A           88 -DFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFG  160 (294)
T ss_dssp             -SEEEEEEECCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             -CEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEecc
Confidence             4789999999999999988753   458999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +++.........            ....++..|++||.+....++.++|||||||++|||++|+.|+.............
T Consensus       161 ~~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~  228 (294)
T 2rku_A          161 LATKVEYDGERK------------KVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIK  228 (294)
T ss_dssp             TCEECCSTTCCB------------CCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH
T ss_pred             CceecccCcccc------------ccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence            997653221110            11245667889999888889999999999999999999999997654322211111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      ..  .       ..+...++    ..+.+++.+||+.||++|||+.|+++.--
T Consensus       229 ~~--~-------~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~~ll~~~~  268 (294)
T 2rku_A          229 KN--E-------YSIPKHIN----PVAASLIQKMLQTDPTARPTINELLNDEF  268 (294)
T ss_dssp             TT--C-------CCCCTTSC----HHHHHHHHHHTCSSGGGSCCGGGGGGSHH
T ss_pred             hc--c-------CCCccccC----HHHHHHHHHHcccChhhCcCHHHHhhChh
Confidence            10  0       01112223    34788999999999999999999997643

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=2.1e-38  Score=340.82  Aligned_cols=274  Identities=14%  Similarity=0.229  Sum_probs=197.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++....  ......+.+|++++++++||||+++++++..........
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            36799999999999999999995 679999999986432  223457789999999999999999999997643111112


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+++ +|.+.+...  ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg  169 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNV--LVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFG  169 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCC-CHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCCEEEccch
Confidence            3578999999975 777777643  3459999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~  673 (747)
                      +++...........        ......++..|+|||++.. ..++.++|||||||++|||+||+.||...... ....+
T Consensus       170 ~a~~~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i  241 (351)
T 3mi9_A          170 LARAFSLAKNSQPN--------RYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALI  241 (351)
T ss_dssp             TCEECCCCSSSSCC--------CCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             hccccccccccccc--------ccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence            99765432211100        0111245677899998865 45899999999999999999999998754432 22222


Q ss_pred             HhccCcCC---ccccccccc------c----CCCCHH-----HHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDG---RRRIVDPVV------L----TTCSQE-----SLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~---~~~~~d~~~------~----~~~~~~-----~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........   .........      .    ......     ....+.+++.+||+.||++|||+.|+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          242 SQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             HHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence            22111100   000000000      0    000000     12347899999999999999999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=3.7e-38  Score=335.31  Aligned_cols=256  Identities=16%  Similarity=0.185  Sum_probs=198.6

Q ss_pred             HHHhhCCCcc-ccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCC
Q 044236          436 KEATNNFDSL-SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGS  510 (747)
Q Consensus       436 ~~~~~~f~~~-~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~  510 (747)
                      ....+.|.+. +.||+|+||.||+|+. .+|+.||||+++...  ......+.+|+.++++++ ||||+++++++...  
T Consensus        24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~--  101 (327)
T 3lm5_A           24 ENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT--  101 (327)
T ss_dssp             HHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS--
T ss_pred             HhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC--
Confidence            3445567776 8899999999999985 469999999997533  334678899999999995 69999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---CC
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---HR  587 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~  587 (747)
                            ...++||||+++|+|.+++... ....+++..+..++.|++.||+|||+   .+|+||||||+|||++.   ++
T Consensus       102 ------~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~~~  171 (327)
T 3lm5_A          102 ------SEIILILEYAAGGEIFSLCLPE-LAEMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLG  171 (327)
T ss_dssp             ------SEEEEEEECCTTEEGGGGGSSC-C-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTTBC
T ss_pred             ------CeEEEEEEecCCCcHHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCCCC
Confidence                  4789999999999999998643 23569999999999999999999999   89999999999999987   78


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      .+||+|||+++........             ....++..|++||++....++.++|||||||++|||++|+.||.....
T Consensus       172 ~~kL~Dfg~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  238 (327)
T 3lm5_A          172 DIKIVDFGMSRKIGHACEL-------------REIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN  238 (327)
T ss_dssp             CEEECCGGGCEEC----------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cEEEeeCccccccCCcccc-------------ccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence            9999999999765432211             112456788999999888999999999999999999999999876543


Q ss_pred             hhH-HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          668 FLL-NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       668 ~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ... ..+.... ..     ..+.....+    ...+.+++.+||+.||.+|||+.|+++.
T Consensus       239 ~~~~~~i~~~~-~~-----~~~~~~~~~----~~~~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          239 QETYLNISQVN-VD-----YSEETFSSV----SQLATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             HHHHHHHHHTC-CC-----CCTTTTTTS----CHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             hHHHHHHHhcc-cc-----cCchhhccc----CHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence            322 2222111 10     011111222    3348899999999999999999999864

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=3.8e-38  Score=364.36  Aligned_cols=259  Identities=21%  Similarity=0.283  Sum_probs=202.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC----CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|++.+.||+|+||.||+|+..    .+..||||+++... ....+.+.+|+.++++++|||||+++|++.+      
T Consensus       389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~------  462 (656)
T 2j0j_A          389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE------  462 (656)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS------
T ss_pred             cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec------
Confidence            467888899999999999999853    25689999987533 3345678999999999999999999999853      


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         +..++||||+++|+|.++++..  ...+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus       463 ---~~~~lv~E~~~~g~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~D  534 (656)
T 2j0j_A          463 ---NPVWIIMELCTLGELRSFLQVR--KFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGD  534 (656)
T ss_dssp             ---SSCEEEEECCTTCBHHHHHHHT--TTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC
T ss_pred             ---CceEEEEEcCCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEe
Confidence               2579999999999999999754  3468999999999999999999999   7999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+++...........           ...++..|+|||.+....++.++|||||||++|||++ |..||..........
T Consensus       535 FG~a~~~~~~~~~~~~-----------~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~  603 (656)
T 2j0j_A          535 FGLSRYMEDSTYYKAS-----------KGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIG  603 (656)
T ss_dssp             CCCCCSCCC---------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHH
T ss_pred             cCCCeecCCCcceecc-----------CCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            9999866433211110           1123456899999988899999999999999999997 888887544332222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ......        .+.....+++    .+.+++.+||+.||.+|||+.|++++|+.+....
T Consensus       604 ~i~~~~--------~~~~~~~~~~----~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~~  653 (656)
T 2j0j_A          604 RIENGE--------RLPMPPNCPP----TLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE  653 (656)
T ss_dssp             HHHHTC--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCC--------CCCCCccccH----HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence            111111        0111223333    4889999999999999999999999999886543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=2.9e-38  Score=366.40  Aligned_cols=249  Identities=19%  Similarity=0.226  Sum_probs=200.1

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~  512 (747)
                      ..++|++.+.||+|+||+||+|+. .+++.||||+++..   .....+.+..|..++..+ +||||+++++++...    
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~----  414 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM----  414 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCS----
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeC----
Confidence            357899999999999999999995 56899999999743   233456788899999988 799999999988763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                          ..+++||||+++|+|.++++..   ..+++..+..|+.||+.||+|||+   .+||||||||+||||+.++.+||+
T Consensus       415 ----~~~~lV~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~  484 (674)
T 3pfq_A          415 ----DRLYFVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIA  484 (674)
T ss_dssp             ----SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEEC
T ss_pred             ----CEEEEEEeCcCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEe
Confidence                4799999999999999999863   358999999999999999999999   899999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+|+........            ....++++.|+|||++....|+.++|||||||++|||++|+.||...+...+..
T Consensus       485 DFGla~~~~~~~~~------------~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~  552 (674)
T 3pfq_A          485 DFGMCKENIWDGVT------------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQ  552 (674)
T ss_dssp             CCTTCEECCCTTCC------------BCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             ecceeeccccCCcc------------cccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            99999753221110            112467889999999999999999999999999999999999997655433322


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCH-----HHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF-----EDVLW  725 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~-----~evl~  725 (747)
                      .+....         ..++...    ...+.+|+.+||+.||++||++     .||.+
T Consensus       553 ~i~~~~---------~~~p~~~----s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~  597 (674)
T 3pfq_A          553 SIMEHN---------VAYPKSM----SKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  597 (674)
T ss_dssp             HHHSSC---------CCCCTTS----CHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred             HHHhCC---------CCCCccC----CHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence            221110         1111223    3348899999999999999997     66654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=3.2e-39  Score=349.79  Aligned_cols=261  Identities=10%  Similarity=0.019  Sum_probs=177.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHH---HHHhcCCCCCcceee-------ee
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRL---DFLSKLQHPHLVSLL-------GH  504 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~---~~l~~l~H~nIv~l~-------g~  504 (747)
                      ..+|...+.||+|+||.||+|+. .+|+.||||++....   ....+.+.+|+   .+|+. +|||||+++       ++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~  139 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA  139 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence            34588899999999999999995 579999999998643   23455677785   45555 799988855       33


Q ss_pred             eeccCCCC---------CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHH------HHHHHHHHHHHHHhhcCCCC
Q 044236          505 CIESGSQD---------DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR------LAILIGVAKAVHFLHSSVIS  569 (747)
Q Consensus       505 ~~~~~~~~---------~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~ia~gL~yLH~~~~~  569 (747)
                      +...+.+.         .......++|||||+ |+|.+++...  ...+.+..+      ..++.||++||+|||+   .
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~--~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~---~  213 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL--DFVYVFRGDEGILALHILTAQLIRLAANLQS---K  213 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH--HHSCCCCHHHHHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh--ccccchhhhhhhhhHHHHHHHHHHHHHHHHH---C
Confidence            33222100         000145899999999 8999999753  123455555      7788999999999999   8


Q ss_pred             CcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceee
Q 044236          570 GSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYN  647 (747)
Q Consensus       570 ~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwS  647 (747)
                      +|+||||||+|||++.++.+||+|||+++........               ..++..|+|||++..  ..++.++||||
T Consensus       214 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~---------------~~~t~~y~aPE~~~~~~~~~~~~~DiwS  278 (371)
T 3q60_A          214 GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPA---------------SSVPVTYAPREFLNASTATFTHALNAWQ  278 (371)
T ss_dssp             TEEETTCSGGGEEECTTSCEEECCGGGEEETTCEEEG---------------GGSCGGGCCHHHHTCSEEECCHHHHHHH
T ss_pred             CCccCcCCHHHEEECCCCCEEEEecceeeecCCCccC---------------ccCCcCCcChhhccCCCCCcCccccHHH
Confidence            9999999999999999999999999999765432210               112357889998876  67999999999


Q ss_pred             hhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          648 FGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       648 fGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      |||++|||+||+.||..........+....    ....................+.+++.+||+.||++|||+.|+++
T Consensus       279 lG~il~elltg~~Pf~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          279 LGLSIYRVWCLFLPFGLVTPGIKGSWKRPS----LRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             HHHHHHHHHHSSCSTTBCCTTCTTCCCBCC----TTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             HHHHHHHHHhCCCCCCCcCcccccchhhhh----hhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            999999999999999754322111000000    00000000000011123345889999999999999999999985

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=6.2e-38  Score=339.54  Aligned_cols=265  Identities=17%  Similarity=0.180  Sum_probs=193.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...  .....+.+.+|+.+++.++||||+++++++...+.  ...
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~~  101 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKS--LEE  101 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCS--TTT
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccc--ccc
Confidence            46799999999999999999984 56899999999743  23445678899999999999999999999876321  112


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+++ +|.+++..     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       102 ~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg  172 (371)
T 2xrw_A          102 FQDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG  172 (371)
T ss_dssp             CCEEEEEEECCSE-EHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred             ccceEEEEEcCCC-CHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEEEee
Confidence            3478999999975 78887753     38899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~  674 (747)
                      +++........             ....++..|+|||++....++.++|||||||++|||++|+.||..... .....+.
T Consensus       173 ~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~  239 (371)
T 2xrw_A          173 LARTAGTSFMM-------------TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVI  239 (371)
T ss_dssp             C-----------------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             ccccccccccc-------------CCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            99765322110             113456789999999888899999999999999999999999875443 2222222


Q ss_pred             hccCcCCc-------------------------cccccccccC---CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGR-------------------------RRIVDPVVLT---TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~-------------------------~~~~d~~~~~---~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........                         ..........   .........+.+++.+||+.||++|||+.|+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          240 EQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             C-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence            11110000                         0000000000   0012235678999999999999999999999975


Q ss_pred             H
Q 044236          727 L  727 (747)
Q Consensus       727 L  727 (747)
                      -
T Consensus       320 p  320 (371)
T 2xrw_A          320 P  320 (371)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2e-38  Score=330.65  Aligned_cols=247  Identities=20%  Similarity=0.254  Sum_probs=194.1

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~  513 (747)
                      ..++|++.+.||+|+||.||+|+. .+++.||||+++..  .......+.+|+..+.++ +||||+++++++...     
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~-----   83 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAED-----   83 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEET-----
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecC-----
Confidence            357799999999999999999995 47999999999753  233456788999999999 999999999999773     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-------
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-------  585 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-------  585 (747)
                         +..++||||+++|+|.+++.... ....+++..+..++.|++.||+|||+   .+|+||||||+||+++.       
T Consensus        84 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~  157 (289)
T 1x8b_A           84 ---DHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAA  157 (289)
T ss_dssp             ---TEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC--------
T ss_pred             ---CeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCccc
Confidence               47899999999999999997531 12458999999999999999999999   89999999999999984       


Q ss_pred             ------------CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHH
Q 044236          586 ------------HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFIL  652 (747)
Q Consensus       586 ------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl  652 (747)
                                  ...+||+|||+++.......                ..++..|++||.+... .++.++|||||||++
T Consensus       158 ~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----------------~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il  221 (289)
T 1x8b_A          158 SEEGDEDDWASNKVMFKIGDLGHVTRISSPQV----------------EEGDSRFLANEVLQENYTHLPKADIFALALTV  221 (289)
T ss_dssp             ------------CCCEEECCCTTCEETTCSCC----------------CCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             ccccccccccCCceEEEEcccccccccCCccc----------------cCCCccccChhHhcCCCCCCchhhHHHHHHHH
Confidence                        44799999999876542211                1245678889888655 566899999999999


Q ss_pred             HHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       653 ~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      |||++|.+|+.....  ...+...    .     .+.+...++.    .+.+++.+||+.||++|||+.|+++.
T Consensus       222 ~~l~~~~~~~~~~~~--~~~~~~~----~-----~~~~~~~~~~----~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          222 VCAAGAEPLPRNGDQ--WHEIRQG----R-----LPRIPQVLSQ----EFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             HHHTTCCCCCSSSHH--HHHHHTT----C-----CCCCSSCCCH----HHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             HHHhcCCCCCcchhH--HHHHHcC----C-----CCCCCcccCH----HHHHHHHHHhCCCcccCCCHHHHhhC
Confidence            999999876654332  1222111    0     1112223333    48899999999999999999999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.9e-38  Score=356.38  Aligned_cols=252  Identities=19%  Similarity=0.229  Sum_probs=200.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++....   ....+.+.+|++++++++|||||+++++|...      
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~------   98 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDK------   98 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECS------
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC------
Confidence            45788999999999999999995 479999999996432   34567899999999999999999999999763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee---cCCCcEEE
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL---DEHRIAKL  591 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl  591 (747)
                        ...++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||+   +.++.+||
T Consensus        99 --~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl  170 (484)
T 3nyv_A           99 --GYFYLVGEVYTGGELFDEIISR---KRFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRI  170 (484)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHTC---SCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEE
T ss_pred             --CEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEE
Confidence              4799999999999999988753   458999999999999999999999   789999999999999   56789999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      +|||+++.........             ...+++.|+|||++.. .++.++||||+||++|||++|..||.........
T Consensus       171 ~Dfg~a~~~~~~~~~~-------------~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~  236 (484)
T 3nyv_A          171 IDFGLSTHFEASKKMK-------------DKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDIL  236 (484)
T ss_dssp             CCTTHHHHBCCCCSHH-------------HHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             EeeeeeEEcccccccc-------------cCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence            9999997654322111             1235677899998855 6999999999999999999999999765443322


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      .........     .+......+    +..+.+++.+||+.||.+|||+.|++++-
T Consensus       237 ~~i~~~~~~-----~~~~~~~~~----s~~~~~li~~~L~~dp~~R~s~~e~l~h~  283 (484)
T 3nyv_A          237 KKVEKGKYT-----FELPQWKKV----SESAKDLIRKMLTYVPSMRISARDALDHE  283 (484)
T ss_dssp             HHHHHCCCC-----CCSGGGGGS----CHHHHHHHHHHTCSSGGGSCCHHHHHTSH
T ss_pred             HHHHcCCCC-----CCCcccccC----CHHHHHHHHHHCCCChhHCcCHHHHhhCh
Confidence            222111110     011111122    33488999999999999999999998643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=4.8e-38  Score=325.96  Aligned_cols=248  Identities=21%  Similarity=0.299  Sum_probs=193.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|.+.+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+.++++++||||+++++++...      
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~------   83 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTP------   83 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS------
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecC------
Confidence            357889999999999999999964 79999999997432   23456789999999999999999999998763      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++||||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus        84 --~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~df  155 (276)
T 2h6d_A           84 --TDFFMVMEYVSGGELFDYICKH---GRVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADF  155 (276)
T ss_dssp             --SEEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCC
T ss_pred             --CeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeec
Confidence              4789999999999999999753   358999999999999999999999   78999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      |+++........             ....++..|++||.+....+ +.++||||||+++|||++|+.|+...........
T Consensus       156 g~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~  222 (276)
T 2h6d_A          156 GLSNMMSDGEFL-------------RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKK  222 (276)
T ss_dssp             CGGGCCCC--------------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred             ccccccCCCcce-------------ecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHH
Confidence            998765432111             01234567888888876655 6899999999999999999999976543332222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....         ......++    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       223 ~~~~~---------~~~~~~~~----~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          223 IRGGV---------FYIPEYLN----RSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             HHHCC---------CCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             hhcCc---------ccCchhcC----HHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            11110         01111223    348889999999999999999999875

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=5.6e-38  Score=353.94  Aligned_cols=251  Identities=17%  Similarity=0.214  Sum_probs=196.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch-------------hcHHHHHHHHHHHhcCCCCCcceeeee
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK-------------YSIQNLKVRLDFLSKLQHPHLVSLLGH  504 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~-------------~~~~~~~~E~~~l~~l~H~nIv~l~g~  504 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.||||++.....             ...+.+.+|+.++++++|||||+++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            57799999999999999999995 5689999999974321             235678999999999999999999999


Q ss_pred             eeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec
Q 044236          505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD  584 (747)
Q Consensus       505 ~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  584 (747)
                      |...        ...++|||||++|+|.+++...   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++
T Consensus       115 ~~~~--------~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~  180 (504)
T 3q5i_A          115 FEDK--------KYFYLVTEFYEGGELFEQIINR---HKFDECDAANIMKQILSGICYLHK---HNIVHRDIKPENILLE  180 (504)
T ss_dssp             EECS--------SEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEES
T ss_pred             EEcC--------CEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEe
Confidence            9763        4789999999999999988753   458999999999999999999999   8999999999999998


Q ss_pred             CCC---cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCC
Q 044236          585 EHR---IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       585 ~~~---~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                      .++   .+||+|||+++........             ....+++.|+|||++. ..++.++|||||||++|||++|..|
T Consensus       181 ~~~~~~~~kl~Dfg~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~p  246 (504)
T 3q5i_A          181 NKNSLLNIKIVDFGLSSFFSKDYKL-------------RDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPP  246 (504)
T ss_dssp             STTCCSSEEECCCTTCEECCTTSCB-------------CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cCCCCccEEEEECCCCEEcCCCCcc-------------ccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCC
Confidence            765   6999999999765432111             1124667889999876 5689999999999999999999999


Q ss_pred             CCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      |.......+..........     .+......++    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       247 f~~~~~~~~~~~i~~~~~~-----~~~~~~~~~s----~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          247 FGGQNDQDIIKKVEKGKYY-----FDFNDWKNIS----DEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             SCCSSHHHHHHHHHHCCCC-----CCHHHHTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCCCHHHHHHHHHcCCCC-----CCccccCCCC----HHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            9765443322222211100     0111112233    348899999999999999999999864

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.9e-38  Score=332.41  Aligned_cols=251  Identities=20%  Similarity=0.296  Sum_probs=194.2

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ..++|++.+.||+|+||.||+|+. .+|+.||||.+....  ..+.+.+|+.++++++||||+++++++...        
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--------   96 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKN--------   96 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEET--------
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeC--------
Confidence            346789999999999999999995 459999999997533  346788999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        97 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~  171 (314)
T 3com_A           97 TDLWIVMEYCGAGSVSDIIRLR--NKTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGV  171 (314)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred             CEEEEEeecCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeeccc
Confidence            4789999999999999998643  3468999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ++.........            ....++..|.+||.+....++.++|||||||++|||++|+.||..............
T Consensus       172 ~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  239 (314)
T 3com_A          172 AGQLTDTMAKR------------NTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPT  239 (314)
T ss_dssp             CEECBTTBSCB------------CCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH
T ss_pred             chhhhhhcccc------------CccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhc
Confidence            97654321110            012345678899998888899999999999999999999999875443222211111


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....   ...       .+......+.+++.+||+.||.+|||+.|+++
T Consensus       240 ~~~~---~~~-------~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          240 NPPP---TFR-------KPELWSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             SCCC---CCS-------SGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCCc---ccC-------CcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            1100   000       11122334889999999999999999999986

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.3e-39  Score=345.67  Aligned_cols=254  Identities=21%  Similarity=0.293  Sum_probs=195.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe----CCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESG  509 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~  509 (747)
                      .++|++.+.||+|+||.||+|+.    .+|+.||||+++...    ....+.+.+|+++++++ +||||+++++++... 
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-  131 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE-  131 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET-
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeC-
Confidence            36799999999999999999986    468999999986432    23345677899999999 699999999998763 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcE
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIA  589 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~  589 (747)
                             ...++||||+++|+|.+++...   ..+++..+..++.|+++||.|||+   .+|+||||||+|||++.++.+
T Consensus       132 -------~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~  198 (355)
T 1vzo_A          132 -------TKLHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHV  198 (355)
T ss_dssp             -------TEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCE
T ss_pred             -------ceEEEEeecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcE
Confidence                   4789999999999999999763   358999999999999999999999   789999999999999999999


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      ||+|||+++..........           ...+++..|++||++..  ..++.++|||||||++|||++|+.||.....
T Consensus       199 kl~DfG~a~~~~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~  267 (355)
T 1vzo_A          199 VLTDFGLSKEFVADETERA-----------YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGE  267 (355)
T ss_dssp             EESCSSEEEECCGGGGGGG-----------CGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTS
T ss_pred             EEeeCCCCeecccCCCCcc-----------cCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCc
Confidence            9999999976543222111           11245678899998874  3478899999999999999999999863221


Q ss_pred             -hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHHHH
Q 044236          668 -FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLWNL  727 (747)
Q Consensus       668 -~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~L  727 (747)
                       .....+......      ..+....    .....+.+++.+||+.||.+||     ++.|+++..
T Consensus       268 ~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~  323 (355)
T 1vzo_A          268 KNSQAEISRRILK------SEPPYPQ----EMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL  323 (355)
T ss_dssp             CCCHHHHHHHHHH------CCCCCCT----TSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred             cchHHHHHHHHhc------cCCCCCc----ccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence             111111110000      0111222    2334488999999999999999     999998754

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.4e-38  Score=350.14  Aligned_cols=264  Identities=18%  Similarity=0.227  Sum_probs=192.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .+|++.+.||+|+||.||+|+. .+|+.||||++.....    ...+|+++|++++|||||+++++|...+.  ......
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~--~~~~~~  127 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGE--KKDEVY  127 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEET--TTTEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCC--CCccee
Confidence            3588899999999999999996 4699999999874332    23479999999999999999999875331  112335


Q ss_pred             EEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC-CcEEEecccc
Q 044236          519 VFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH-RIAKLSDYGI  596 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGl  596 (747)
                      .++||||+++ ++.+.+... .....+++..+..++.||++||+|||+   .+|+||||||+|||++.+ +.+||+|||+
T Consensus       128 ~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG~  203 (420)
T 1j1b_A          128 LNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGS  203 (420)
T ss_dssp             EEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             EEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeEEeccchh
Confidence            7799999986 666555421 124569999999999999999999999   899999999999999965 6789999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~  674 (747)
                      ++........             ....++..|+|||++... .++.++|||||||++|||++|+.||.... .+.+..+.
T Consensus       204 a~~~~~~~~~-------------~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~  270 (420)
T 1j1b_A          204 AKQLVRGEPN-------------VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEII  270 (420)
T ss_dssp             CEECCTTCCC-------------CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             hhhcccCCCc-------------eeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            9765332111             012356779999988654 78999999999999999999999987543 33333333


Q ss_pred             hccCcCC----------ccccccccccC-----CCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDG----------RRRIVDPVVLT-----TCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~----------~~~~~d~~~~~-----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......          ..+..-+.+..     .++......+.+|+.+||+.||.+|||+.|++++
T Consensus       271 ~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          271 KVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             HHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence            2211110          00000011100     0112233458999999999999999999999864

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=2.7e-38  Score=330.30  Aligned_cols=252  Identities=15%  Similarity=0.227  Sum_probs=182.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++...  ....+.+.++...++.++||||+++++++...       
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~-------   78 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFRE-------   78 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS-------
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeecc-------
Confidence            46788999999999999999995 679999999997432  22223344555568889999999999999863       


Q ss_pred             CceEEEEEeccCCCCcccccccC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceeecCCCcEEEec
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSEN-CPENVLKWSDRLAILIGVAKAVHFLHSSVIS-GSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~-~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                       ...++||||++ |+|.+++... .....+++..+..++.|++.||+|||+   . +|+||||||+||+++.++.+||+|
T Consensus        79 -~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~D  153 (290)
T 3fme_A           79 -GDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCD  153 (290)
T ss_dssp             -SSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCCSGGGCEECTTCCEEBCC
T ss_pred             -CCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEee
Confidence             37899999997 5887776531 124569999999999999999999998   6 899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeee----eccCCCcCCceeehhHHHHHHhhCCCCCCCCh--h
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVV----DIQRTKLEDDVYNFGFILLESLVGPIVTGKGE--A  667 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~--~  667 (747)
                      ||+++.........             ...++..|++||.+    ....++.++|||||||++|||+||+.|+....  .
T Consensus       154 fg~~~~~~~~~~~~-------------~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  220 (290)
T 3fme_A          154 FGISGYLVDDVAKD-------------IDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF  220 (290)
T ss_dssp             C----------------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH
T ss_pred             cCCccccccccccc-------------ccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchH
Confidence            99997654322111             12355678889985    45678899999999999999999999997422  2


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ............    ..    ....++    ..+.+++.+||+.||++|||+.|+++.-
T Consensus       221 ~~~~~~~~~~~~----~~----~~~~~~----~~~~~li~~~l~~~p~~Rpt~~e~l~hp  268 (290)
T 3fme_A          221 QQLKQVVEEPSP----QL----PADKFS----AEFVDFTSQCLKKNSKERPTYPELMQHP  268 (290)
T ss_dssp             HHHHHHHHSCCC----CC----CTTTSC----HHHHHHHHHHTCSSGGGSCCHHHHTTSH
T ss_pred             HHHHHHhccCCC----Cc----ccccCC----HHHHHHHHHHhhcChhhCcCHHHHHhCc
Confidence            222222211100    00    011223    3488999999999999999999998743

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=6.5e-38  Score=338.26  Aligned_cols=263  Identities=16%  Similarity=0.221  Sum_probs=183.3

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+ ..+|+.||||++...  .....+.+.+|+++++.++||||+++++++......  ..
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~--~~  105 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSL--EE  105 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSG--GG
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcc--cc
Confidence            3679999999999999999998 467999999998642  234456788999999999999999999998753210  11


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+ +++|.+++..    ..+++..+..++.||++||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       106 ~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL~DFG  177 (367)
T 2fst_X          106 FNDVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG  177 (367)
T ss_dssp             CCCCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC--
T ss_pred             CCeEEEEeccc-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEEeecc
Confidence            24679999999 6899998864    358999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      +++.......               ...++..|+|||++.. ..++.++|||||||++|||++|+.||...+. ..+..+
T Consensus       178 ~a~~~~~~~~---------------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i  242 (367)
T 2fst_X          178 LARHTADEMT---------------GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLI  242 (367)
T ss_dssp             ----------------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             ccccccccCC---------------CcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9976432110               1245677899998866 6789999999999999999999999875442 333333


Q ss_pred             HhccCcCCc---cc--------ccc--cccc----CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGR---RR--------IVD--PVVL----TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~---~~--------~~d--~~~~----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........   ..        .+.  +...    ..........+.+|+.+||+.||.+|||+.|+++.
T Consensus       243 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          243 LRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             HHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence            222111100   00        000  0000    00001123458899999999999999999999864

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=339.30  Aligned_cols=255  Identities=15%  Similarity=0.161  Sum_probs=198.3

Q ss_pred             hhCCCccccccCCCCeeEEEEE------eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC---CCCcceeeeeeeccC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR------LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ---HPHLVSLLGHCIESG  509 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~------~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~---H~nIv~l~g~~~~~~  509 (747)
                      .++|.+.+.||+|+||.||+|+      ..+++.||||+++..   ...++.+|++++++++   |+||+++++++... 
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~-  139 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ-  139 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS-
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC-
Confidence            4678889999999999999994      456899999998743   3456778888888887   99999999999873 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccC--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC--
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE--  585 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--  585 (747)
                             +..++|||||++|+|.+++...  .....++|..++.|+.||++||+|||+   .+||||||||+|||++.  
T Consensus       140 -------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~~  209 (365)
T 3e7e_A          140 -------NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGF  209 (365)
T ss_dssp             -------SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGGG
T ss_pred             -------CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEecccc
Confidence                   3789999999999999999742  124569999999999999999999999   88999999999999998  


Q ss_pred             ---------CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHh
Q 044236          586 ---------HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       586 ---------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ell  656 (747)
                               ++.+||+|||+|+.+........          ....+++..|+|||++....++.++|||||||++|||+
T Consensus       210 ~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  279 (365)
T 3e7e_A          210 LEQDDEDDLSAGLALIDLGQSIDMKLFPKGTI----------FTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCML  279 (365)
T ss_dssp             TCC------CTTEEECCCTTCEEGGGSCTTEE----------ECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHH
T ss_pred             cCccccccccCCEEEeeCchhhhhhccCCCce----------eeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHH
Confidence                     89999999999976542211110          11135678899999999888999999999999999999


Q ss_pred             hCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCC-CCHHHHHHHHHHHHHHh
Q 044236          657 VGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR-PSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       657 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R-Ps~~evl~~L~~~~~~~  734 (747)
                      ||+.|+.......              ...+..... .+  ....+.+++..|++.+|.+| |++.++.+.|+......
T Consensus       280 tg~~pf~~~~~~~--------------~~~~~~~~~-~~--~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~  341 (365)
T 3e7e_A          280 FGTYMKVKNEGGE--------------CKPEGLFRR-LP--HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQH  341 (365)
T ss_dssp             HSSCCCEEEETTE--------------EEECSCCTT-CS--SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hCCCccccCCCCc--------------eeechhccc-cC--cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHh
Confidence            9998885322110              000111111 11  12346778899999999998 67888888888776543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=7.7e-38  Score=345.62  Aligned_cols=214  Identities=17%  Similarity=0.235  Sum_probs=165.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||+++..  .....+.+.+|+++|++++|||||++++++...+   ...
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~---~~~  101 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDD---LLK  101 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSC---TTT
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCC---CCc
Confidence            46799999999999999999984 56899999999743  3345578899999999999999999999987642   112


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||++ |+|.+++..   ...+++..+..++.||++||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       102 ~~~~~lv~e~~~-~~L~~~~~~---~~~l~~~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL~DFG  174 (432)
T 3n9x_A          102 FDELYIVLEIAD-SDLKKLFKT---PIFLTEEHIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKVCDFG  174 (432)
T ss_dssp             CCCEEEEEECCS-EEHHHHHHS---SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             CCeEEEEEecCC-cCHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEEccCC
Confidence            257899999996 599999875   3459999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccchhcccC-------CCC---CcccccceeeecCCcceeeee-eccCCCcCCceeehhHHHHHHhhCCCCC
Q 044236          596 ISIIMEEHEKLEAKG-------EGP---KARYGFLFICRTSAENVVIVV-DIQRTKLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       596 la~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~e~~-~~~~~s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                      +|+............       ..+   .........+++..|+|||++ ....++.++|||||||++|||++|..|+
T Consensus       175 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          175 LARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             TCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence            998765432210000       000   000011234667889999985 5667999999999999999999854433

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=3.7e-38  Score=340.09  Aligned_cols=275  Identities=17%  Similarity=0.188  Sum_probs=189.0

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      +......++|++.+.||+|+||.||+|+. .+|+.||||++..... ....+.+|++.++.++|||||+++++|...+. 
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~-   93 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE-   93 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS-
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhcccc-
Confidence            34566778999999999999999999995 5699999999864332 23456678888899999999999999976431 


Q ss_pred             CCCCCceEEEEEeccCCCCccccccc-CCCCCCCCHHHHHHHHHHHHHHHHHhh--cCCCCCcccCCCCCCceeecC-CC
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSE-NCPENVLKWSDRLAILIGVAKAVHFLH--SSVISGSFSNRLTTNNILLDE-HR  587 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~-~~~~~~l~~~~~~~i~~~ia~gL~yLH--~~~~~~ivHrDlk~~NILld~-~~  587 (747)
                      ........++||||+++ +|...+.. ......+++..+..++.|++.||.|||  +   .+|+||||||+|||++. ++
T Consensus        94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~ivH~Dlkp~NIll~~~~~  169 (360)
T 3e3p_A           94 RDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPS---VNVCHRDIKPHNVLVNEADG  169 (360)
T ss_dssp             SCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTT---TCCBCSCCCGGGEEEETTTT
T ss_pred             ccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCC---CCeecCcCCHHHEEEeCCCC
Confidence            11223357899999986 44443332 122456889999999999999999999  6   89999999999999996 89


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCCh
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGE  666 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~  666 (747)
                      .+||+|||+++.........             ...++..|+|||++... .++.++|||||||++|||++|+.||....
T Consensus       170 ~~kl~Dfg~a~~~~~~~~~~-------------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~  236 (360)
T 3e3p_A          170 TLKLCDFGSAKKLSPSEPNV-------------AYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN  236 (360)
T ss_dssp             EEEECCCTTCBCCCTTSCCC-------------STTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cEEEeeCCCceecCCCCCcc-------------cccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence            99999999997654322110             11345678899987554 48999999999999999999999987544


Q ss_pred             h-hhHHHHHhccCcCC------------cccccc------ccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          667 A-FLLNEMASFGSQDG------------RRRIVD------PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       667 ~-~~~~~~~~~~~~~~------------~~~~~d------~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      . ..+..+........            .....+      ..............+.+++.+||+.||.+|||+.|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          237 SAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             hHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            3 22222222111100            000000      000011122245668999999999999999999999864

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=5.8e-38  Score=345.97  Aligned_cols=199  Identities=18%  Similarity=0.199  Sum_probs=166.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC------CCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL------QHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l------~H~nIv~l~g~~~~~~~~  511 (747)
                      ..+|++.+.||+|+||.||+|+. .+++.||||+++.. ....+.+.+|+++++.+      .|+||+++++++...   
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~---  171 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR---  171 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET---
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC---
Confidence            35689999999999999999984 56899999999743 23345677888888776      577999999999873   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc--E
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI--A  589 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--~  589 (747)
                           ...++||||+. |+|.+++.... ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.  +
T Consensus       172 -----~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~v  241 (429)
T 3kvw_A          172 -----NHICMTFELLS-MNLYELIKKNK-FQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGI  241 (429)
T ss_dssp             -----TEEEEEECCCC-CBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCE
T ss_pred             -----CeEEEEEeccC-CCHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcce
Confidence                 48999999996 69999887642 3458999999999999999999999   79999999999999999887  9


Q ss_pred             EEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh
Q 044236          590 KLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE  666 (747)
Q Consensus       590 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~  666 (747)
                      ||+|||+++.......               ...++..|+|||++....++.++|||||||++|||+||..||....
T Consensus       242 kL~DFG~a~~~~~~~~---------------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~  303 (429)
T 3kvw_A          242 KVIDFGSSCYEHQRVY---------------TYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGED  303 (429)
T ss_dssp             EECCCTTCEETTCCCC---------------SSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             EEeecccceecCCccc---------------ccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCC
Confidence            9999999965332110               1245667999999998899999999999999999999998887543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=326.83  Aligned_cols=256  Identities=19%  Similarity=0.238  Sum_probs=196.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc----hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~----~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .++|.+.+.||+|+||.||+|.. .+++.||||+++...    ....+.+.+|++++++++||||+++++++...+    
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----   79 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEE----   79 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC-----
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCC----
Confidence            46899999999999999999995 568999999997532    234577899999999999999999999986422    


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                        ....++||||+++| |.+++... ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|
T Consensus        80 --~~~~~lv~e~~~~~-l~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~d  152 (305)
T 2wtk_C           80 --KQKMYMVMEYCVCG-MQEMLDSV-PEKRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISA  152 (305)
T ss_dssp             ----CEEEEEECCSEE-HHHHHHHS-TTCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECC
T ss_pred             --CCeEEEEehhccCC-HHHHHHhC-cccccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeec
Confidence              34789999999886 76666543 24568999999999999999999999   8999999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC--CCcCCceeehhHHHHHHhhCCCCCCCChhhhHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR--TKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN  671 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~  671 (747)
                      ||+++..........          .....++..|++||.+....  ++.++|||||||++|||++|+.|+.........
T Consensus       153 fg~~~~~~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~  222 (305)
T 2wtk_C          153 LGVAEALHPFAADDT----------CRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLF  222 (305)
T ss_dssp             CTTCEECCTTCSSCE----------ECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred             cccccccCccccccc----------cccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHH
Confidence            999976542211110          01123556788898876543  377999999999999999999999765433322


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      .......         ......++.    .+.+++.+||+.||.+|||+.|+++.--
T Consensus       223 ~~i~~~~---------~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~~~~  266 (305)
T 2wtk_C          223 ENIGKGS---------YAIPGDCGP----PLSDLLKGMLEYEPAKRFSIRQIRQHSW  266 (305)
T ss_dssp             HHHHHCC---------CCCCSSSCH----HHHHHHHHHTCSSTTTSCCHHHHHHSHH
T ss_pred             HHHhcCC---------CCCCCccCH----HHHHHHHHHccCChhhCCCHHHHhcCcc
Confidence            2111110         111223333    4788999999999999999999997643

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=5.7e-38  Score=349.12  Aligned_cols=265  Identities=15%  Similarity=0.115  Sum_probs=200.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.||||++......  ..+.+|+++++.++|++++..+.++...       ..
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~E~~il~~L~~~~~i~~i~~~~~~-------~~   76 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH--PQLLYESKIYRILQGGTGIPNVRWFGVE-------GD   76 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS--CCHHHHHHHHHHTTTSTTCCCEEEEEEE-------TT
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc--HHHHHHHHHHHHhcCCCCCCeEEEEEee-------CC
Confidence            36789999999999999999994 67999999988744322  3578899999999885555444444332       34


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee---cCCCcEEEecc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL---DEHRIAKLSDY  594 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DF  594 (747)
                      ..++||||+ +|+|.+++...  ...+++..++.|+.||+.||+|||+   .+||||||||+|||+   +.++.+||+||
T Consensus        77 ~~~lvme~~-g~sL~~ll~~~--~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DF  150 (483)
T 3sv0_A           77 YNVLVMDLL-GPSLEDLFNFC--SRKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDF  150 (483)
T ss_dssp             EEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCC
T ss_pred             EEEEEEECC-CCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeC
Confidence            789999999 99999999753  3469999999999999999999999   899999999999999   68899999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh----hH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF----LL  670 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~----~~  670 (747)
                      |+++...........     .........++..|++||.+....++.++|||||||++|||++|+.||......    .+
T Consensus       151 Gla~~~~~~~~~~~~-----~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~  225 (483)
T 3sv0_A          151 GLAKKYRDTSTHQHI-----PYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKY  225 (483)
T ss_dssp             TTCEECBCTTTCCBC-----CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHH
T ss_pred             CcceeccCCcccccc-----ccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHH
Confidence            999876543221110     001111245678899999999889999999999999999999999998753321    11


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      ..+.........     ..+...++.    ++.+++..||+.+|++||++.+|++.|+.+..
T Consensus       226 ~~i~~~~~~~~~-----~~l~~~~p~----~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~  278 (483)
T 3sv0_A          226 EKISEKKVATSI-----EALCRGYPT----EFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI  278 (483)
T ss_dssp             HHHHHHHHHSCH-----HHHHTTSCH----HHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHhhccccccH-----HHHhcCCcH----HHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence            111111000000     011123333    48899999999999999999999999988755

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=7.9e-38  Score=332.12  Aligned_cols=250  Identities=21%  Similarity=0.299  Sum_probs=191.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESG  509 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~  509 (747)
                      .++|.+.+.||+|+||.||+|+. .+++.||||++....        ......+.+|++++++++||||+++++++... 
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-   87 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-   87 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS-
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC-
Confidence            46799999999999999999985 568999999986432        12234578999999999999999999998642 


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc-
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI-  588 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-  588 (747)
                              ..++||||+++|+|.+++..   ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++. 
T Consensus        88 --------~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~  153 (322)
T 2ycf_A           88 --------DYYIVLELMEGGELFDKVVG---NKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEED  153 (322)
T ss_dssp             --------SEEEEEECCTTEETHHHHST---TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSS
T ss_pred             --------ceEEEEecCCCCcHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCC
Confidence                    47999999999999998875   3468999999999999999999999   89999999999999987654 


Q ss_pred             --EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhhCCCCCC
Q 044236          589 --AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLVGPIVTG  663 (747)
Q Consensus       589 --~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Elltg~~p~~  663 (747)
                        +||+|||+++.........             ...++..|++||++.   ...++.++|||||||++|||++|..||.
T Consensus       154 ~~~kl~Dfg~~~~~~~~~~~~-------------~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  220 (322)
T 2ycf_A          154 CLIKITDFGHSKILGETSLMR-------------TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFS  220 (322)
T ss_dssp             CCEEECCCTTCEECCCCHHHH-------------HHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CeEEEccCccceecccccccc-------------cccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence              9999999997654322111             123566788999863   4568899999999999999999999986


Q ss_pred             CChhh-hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          664 KGEAF-LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       664 ~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ..... .+..........     ..+.....++    ..+.+++.+||+.||++|||+.|+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          221 EHRTQVSLKDQITSGKYN-----FIPEVWAEVS----EKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             STTCSSCHHHHHHHTCCC-----CCHHHHTTSC----HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccchHHHHHHHHHhCccc-----cCchhhhhcC----HHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            43321 111111111100     0111112223    34889999999999999999999984

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=2.4e-38  Score=345.38  Aligned_cols=265  Identities=18%  Similarity=0.230  Sum_probs=191.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .+|.+.+.||+|+||.||+|+...+..||||++......    ..+|+++|+.++|||||+++++|...+..  ......
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~--~~~~~~  113 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDK--KDEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSS--SSCEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCC--CCceEE
Confidence            468889999999999999999876667999988643322    23699999999999999999999764311  123457


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec-CCCcEEEecccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD-EHRIAKLSDYGISI  598 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~  598 (747)
                      ++||||++++.+............+++..+..++.|+++||+|||+   .+|+||||||+|||++ .++.+||+|||+|+
T Consensus       114 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          114 NLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence            8999999875443332211124568999999999999999999999   8999999999999999 79999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~~~  676 (747)
                      .........             ...++..|+|||++... .++.++|||||||++|||++|+.||.... .+.+..+...
T Consensus       191 ~~~~~~~~~-------------~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~  257 (394)
T 4e7w_A          191 ILIAGEPNV-------------SYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKV  257 (394)
T ss_dssp             ECCTTCCCC-------------SSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             cccCCCCCc-------------ccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            653322110             12345678999987654 58999999999999999999999987543 2333333221


Q ss_pred             cCcCC---------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQDG---------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~~---------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....               ............++......+.+++.+||+.||.+|||+.|++++
T Consensus       258 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          258 LGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             HCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             hCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence            11110               000000000011122234458999999999999999999999864

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=7.5e-38  Score=328.32  Aligned_cols=251  Identities=20%  Similarity=0.297  Sum_probs=196.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---------hhcHHHHHHHHHHHhcCC-CCCcceeeeeeec
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---------KYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIE  507 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---------~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~  507 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++...         ....+.+.+|++++++++ ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            46899999999999999999995 568999999997432         122456789999999996 9999999999876


Q ss_pred             cCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       508 ~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                      .        ...++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++
T Consensus        96 ~--------~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~  161 (298)
T 1phk_A           96 N--------TFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDM  161 (298)
T ss_dssp             S--------SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTC
T ss_pred             C--------CeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCC
Confidence            3        4789999999999999999753   458999999999999999999999   8999999999999999999


Q ss_pred             cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee------ccCCCcCCceeehhHHHHHHhhCCCC
Q 044236          588 IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD------IQRTKLEDDVYNFGFILLESLVGPIV  661 (747)
Q Consensus       588 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~~~~s~k~DVwSfGvvl~Elltg~~p  661 (747)
                      .+||+|||+++.........             ...++..|++||++.      ...++.++|||||||++|||++|+.|
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p  228 (298)
T 1phk_A          162 NIKLTDFGFSCQLDPGEKLR-------------EVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP  228 (298)
T ss_dssp             CEEECCCTTCEECCTTCCBC-------------CCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cEEEecccchhhcCCCcccc-------------cccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCC
Confidence            99999999997654322110             123456788888774      34678899999999999999999999


Q ss_pred             CCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      +..................    ...+ ...    .....+.+++.+||+.||.+|||+.|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~----~~~~-~~~----~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          229 FWHRKQMLMLRMIMSGNYQ----FGSP-EWD----DYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             SCCSSHHHHHHHHHHTCCC----CCTT-TGG----GSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             CcCccHHHHHHHHhcCCcc----cCcc-ccc----ccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            8755433322221111100    0001 111    22334889999999999999999999985

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=335.46  Aligned_cols=263  Identities=20%  Similarity=0.303  Sum_probs=196.9

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++....++|++.+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|+.+++++ +||||+++++++.....
T Consensus        17 ~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~   95 (326)
T 2x7f_A           17 SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP   95 (326)
T ss_dssp             CCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred             hhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence            34445578899999999999999999995 579999999987443 2346788999999999 79999999999976321


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  590 (747)
                        .......++||||+++|+|.+++.... ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+|
T Consensus        96 --~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~k  169 (326)
T 2x7f_A           96 --PGMDDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVK  169 (326)
T ss_dssp             ---CCCCEEEEEEECCTTEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEE
T ss_pred             --ccccceEEEEEEcCCCCcHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCCCCEE
Confidence              111357899999999999999987532 3468999999999999999999999   7899999999999999999999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      |+|||+++.........            ....++..|++||.+.     ...++.++|||||||++|||++|+.|+...
T Consensus       170 l~Dfg~~~~~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  237 (326)
T 2x7f_A          170 LVDFGVSAQLDRTVGRR------------NTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  237 (326)
T ss_dssp             ECCCTTTC-------------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             EeeCcCceecCcCcccc------------ccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            99999987654221110            1124566788898876     566889999999999999999999998654


Q ss_pred             hhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .............   ....    ....++.    .+.+++.+||+.||.+|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~---~~~~----~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          238 HPMRALFLIPRNP---APRL----KSKKWSK----KFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             CHHHHHHHHHHSC---CCCC----SCSCSCH----HHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             cHHHHHHHhhcCc---cccC----CccccCH----HHHHHHHHHhccChhhCCCHHHHhh
Confidence            4322211111110   0000    1122333    4889999999999999999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=3.6e-38  Score=334.13  Aligned_cols=261  Identities=16%  Similarity=0.240  Sum_probs=194.6

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+...  .||||+++...  ....+.+.+|+.++++++||||+++++++...        
T Consensus        32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--------  101 (319)
T 2y4i_B           32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSP--------  101 (319)
T ss_dssp             CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECS--------
T ss_pred             HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecC--------
Confidence            4678899999999999999999754  48999987432  22335677899999999999999999999863        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++ ++.+||+|||+
T Consensus       102 ~~~~iv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~~~l~Dfg~  175 (319)
T 2y4i_B          102 PHLAIITSLCKGRTLYSVVRDA--KIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGL  175 (319)
T ss_dssp             SCEEEECBCCCSEEHHHHTTSS--CCCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---CCEECCCSC
T ss_pred             CceEEEeecccCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCCEEEeecCC
Confidence            3689999999999999999764  3468999999999999999999999   7899999999999998 67999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec---------cCCCcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI---------QRTKLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---------~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      ++............       ......++..|++||.+..         ..++.++|||||||++|||++|+.||.....
T Consensus       176 ~~~~~~~~~~~~~~-------~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~  248 (319)
T 2y4i_B          176 FSISGVLQAGRRED-------KLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPA  248 (319)
T ss_dssp             CC----------CC-------SCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCH
T ss_pred             cccccccccccccc-------ccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            87653221111000       0111235667888887754         4578899999999999999999999976554


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      ....+........   ...    ...++.+    +.+++.+||+.||.+|||+.+++++|+.+...
T Consensus       249 ~~~~~~~~~~~~~---~~~----~~~~~~~----l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~  303 (319)
T 2y4i_B          249 EAIIWQMGTGMKP---NLS----QIGMGKE----ISDILLFCWAFEQEERPTFTKLMDMLEKLPKR  303 (319)
T ss_dssp             HHHHHHHHTTCCC---CCC----CSSCCTT----HHHHHHHHHCSSTTTSCCHHHHHHHHTTC---
T ss_pred             HHHHHHhccCCCC---CCC----cCCCCHH----HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence            4333222211110   000    1122333    78999999999999999999999999876553

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.7e-37  Score=335.42  Aligned_cols=268  Identities=16%  Similarity=0.200  Sum_probs=199.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++....   ....
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~---~~~~  102 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPT---IEQM  102 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSS---TTTC
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCC---cccc
Confidence            45799999999999999999984 578999999997433 334477889999999999999999999987632   1123


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||++ |+|.+++..    ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       103 ~~~~iv~e~~~-~~L~~~l~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  174 (364)
T 3qyz_A          103 KDVYIVQDLME-TDLYKLLKT----QHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGL  174 (364)
T ss_dssp             CCEEEEEECCS-EEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEcccC-cCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEEEEeCcc
Confidence            46899999997 599998864    348999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~  674 (747)
                      ++...........         .....++..|++||++.. ..++.++|||||||++|||++|+.||.... .+.+..+.
T Consensus       175 a~~~~~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~  245 (364)
T 3qyz_A          175 ARVADPDHDHTGF---------LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHIL  245 (364)
T ss_dssp             CEECCGGGCBCCT---------TCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHH
T ss_pred             eEecCCCCCcccc---------ccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHH
Confidence            9765433221110         011345677899997654 458999999999999999999999987543 23333322


Q ss_pred             hccCcCCcc---------------ccccccc--cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRR---------------RIVDPVV--LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~---------------~~~d~~~--~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........               ....+..  ...........+.+++.+||+.||.+|||+.|+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          246 GILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             HHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            211110000               0000000  000011223458899999999999999999999864

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.1e-37  Score=327.54  Aligned_cols=269  Identities=19%  Similarity=0.306  Sum_probs=193.3

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCC-----
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ-----  511 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~-----  511 (747)
                      ..++|++.+.||+|+||.||+|+. .+|+.||||++... ....+.+.+|+.++++++||||++++++|......     
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            356789999999999999999995 57999999999643 34457789999999999999999999998653100     


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                      ........++||||+++|+|.+++...  ...+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~~~kl  157 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSE--NLNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKI  157 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHS--CGGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEE
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhcc--ccccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCCCEEE
Confidence            001245789999999999999999754  3458889999999999999999999   78999999999999999999999


Q ss_pred             ecccccccccccchhcccC--CCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCCh--
Q 044236          592 SDYGISIIMEEHEKLEAKG--EGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGE--  666 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~--  666 (747)
                      +|||+++............  ..+..........++..|++||.+... .++.++|||||||++|||++   |+....  
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~  234 (303)
T 1zy4_A          158 GDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMER  234 (303)
T ss_dssp             CCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHH
T ss_pred             eeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhH
Confidence            9999997654321110000  000000111223567789999988654 68999999999999999998   333211  


Q ss_pred             hhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......+...          .......++......+.+++.+||+.||.+|||+.|+++
T Consensus       235 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          235 VNILKKLRSV----------SIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             HHHHHHHHST----------TCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHhcccc----------ccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence            1111111110          011112223333445889999999999999999999986

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.4e-37  Score=327.81  Aligned_cols=270  Identities=18%  Similarity=0.241  Sum_probs=192.0

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC------
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD------  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~------  512 (747)
                      ++|.+.+.||+|+||.||+|+.. +|+.||||++........+.+.+|++++++++||||+++++++...+...      
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            57889999999999999999964 59999999998766666788999999999999999999999886432110      


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec-CCCcEEE
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD-EHRIAKL  591 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl  591 (747)
                      .......++||||++ |+|.+++..    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++ .++.+||
T Consensus        91 ~~~~~~~~lv~e~~~-~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~kl  162 (320)
T 2i6l_A           91 LTELNSVYIVQEYME-TDLANVLEQ----GPLLEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFINTEDLVLKI  162 (320)
T ss_dssp             CCSCSEEEEEEECCS-EEHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTTEEEE
T ss_pred             ccccCceeEEeeccC-CCHHHHhhc----CCccHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCeEEE
Confidence            012357899999998 699998864    358999999999999999999999   8999999999999997 5679999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-h
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-L  669 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~  669 (747)
                      +|||+++............         ....++..|++||.+.. ..++.++|||||||++|||++|+.||...... .
T Consensus       163 ~Dfg~~~~~~~~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~  233 (320)
T 2i6l_A          163 GDFGLARIMDPHYSHKGHL---------SEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQ  233 (320)
T ss_dssp             CCCTTCBCC--------CC---------CGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             ccCccccccCCCccccccc---------ccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHH
Confidence            9999997654322111000         01123556888887754 67899999999999999999999998754432 2


Q ss_pred             HHHHHhccCcCC---ccc------------cccccc-cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQDG---RRR------------IVDPVV-LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~~---~~~------------~~d~~~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...+........   ..+            ...+.. ...........+.+++.+||+.||++|||+.|+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          234 MQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             HHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            222211110000   000            000000 000011223458899999999999999999999864

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=2.1e-37  Score=332.51  Aligned_cols=261  Identities=16%  Similarity=0.205  Sum_probs=197.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhc-----------------HHHHHHHHHHHhcCCCCCccee
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS-----------------IQNLKVRLDFLSKLQHPHLVSL  501 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~-----------------~~~~~~E~~~l~~l~H~nIv~l  501 (747)
                      .++|.+.+.||+|+||.||+|+. +|+.||||++.......                 .+.+.+|++++++++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            46799999999999999999999 89999999997432211                 1788999999999999999999


Q ss_pred             eeeeeccCCCCCCCCceEEEEEeccCCCCcccc------cccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH------LSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       502 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                      ++++...        +..++||||+++|+|.++      +... ....+++..+..++.|++.||+|||+.  .+|+|||
T Consensus       109 ~~~~~~~--------~~~~lv~e~~~~~~L~~~~~~~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~d  177 (348)
T 2pml_X          109 EGIITNY--------DEVYIIYEYMENDSILKFDEYFFVLDKN-YTCFIPIQVIKCIIKSVLNSFSYIHNE--KNICHRD  177 (348)
T ss_dssp             SEEEESS--------SEEEEEEECCTTCBSSEESSSEESSCSS-SCCCCCHHHHHHHHHHHHHHHHHHHHT--SCEECCC
T ss_pred             EEEEeeC--------CeEEEEEeccCCCcHHHHHHHhhhhhhc-cccCCCHHHHHHHHHHHHHHHHHHhcc--CCEeecC
Confidence            9999873        478999999999999999      5432 245699999999999999999999972  5799999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCc-CCceeehhHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKL-EDDVYNFGFILL  653 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~-k~DVwSfGvvl~  653 (747)
                      |||+||+++.++.+||+|||+++.......              ....++..|++||.+... .++. ++|||||||++|
T Consensus       178 l~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--------------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~  243 (348)
T 2pml_X          178 VKPSNILMDKNGRVKLSDFGESEYMVDKKI--------------KGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLY  243 (348)
T ss_dssp             CCGGGEEECTTSCEEECCCTTCEECBTTEE--------------CSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHH
T ss_pred             CChHhEEEcCCCcEEEeccccccccccccc--------------cCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHH
Confidence            999999999999999999999976543211              012345678888888766 5665 999999999999


Q ss_pred             HHhhCCCCCCCChh--hhHHHHHhccCcCC--ccccccccc---cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          654 ESLVGPIVTGKGEA--FLLNEMASFGSQDG--RRRIVDPVV---LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       654 Elltg~~p~~~~~~--~~~~~~~~~~~~~~--~~~~~d~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ||++|+.||.....  .....+........  ......+..   ...........+.+++.+||+.||.+|||+.|+++
T Consensus       244 ~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          244 VMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             HHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            99999999875433  22222211100000  000000000   00001223345889999999999999999999986

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=341.64  Aligned_cols=265  Identities=18%  Similarity=0.226  Sum_probs=180.8

Q ss_pred             CCCc-cccccCCCCeeEEEEEeC---CCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          441 NFDS-LSFMGEGSRGKLYKGRLE---NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       441 ~f~~-~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .|.+ .++||+|+||.||+|+..   +++.||||++....  ....+.+|+++|++++|||||+++++|....      .
T Consensus        21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~------~   92 (405)
T 3rgf_A           21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHA------D   92 (405)
T ss_dssp             HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETT------T
T ss_pred             hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCC------C
Confidence            3554 457999999999999964   57899999997432  2346789999999999999999999996532      3


Q ss_pred             ceEEEEEeccCCCCcccccccC------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee----cCC
Q 044236          517 NKVFLVYEYIPNGSYRAHLSEN------CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL----DEH  586 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~  586 (747)
                      ...++||||+++ +|.+++...      .....+++..+..++.||+.||+|||+   .+|+||||||+|||+    +.+
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~  168 (405)
T 3rgf_A           93 RKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPER  168 (405)
T ss_dssp             TEEEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTT
T ss_pred             CeEEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCC
Confidence            579999999974 887777522      112348999999999999999999999   789999999999999    778


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      +.+||+|||+++..........         .....+++..|+|||++.. ..++.++|||||||++|||++|+.||...
T Consensus       169 ~~~kl~Dfg~a~~~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          169 GRVKIADMGFARLFNSPLKPLA---------DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             TCEEECCTTCCC-------------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             CcEEEEECCCceecCCCCcccc---------cCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999976643211100         0112356778999998876 45899999999999999999999998643


Q ss_pred             hh----------hhHHHHHhccCcCCcc---cc---c---------cccccCCCC---------HHHHHHHHHHHhHccC
Q 044236          666 EA----------FLLNEMASFGSQDGRR---RI---V---------DPVVLTTCS---------QESLSIVVSITNKCIC  711 (747)
Q Consensus       666 ~~----------~~~~~~~~~~~~~~~~---~~---~---------d~~~~~~~~---------~~~~~~~~~l~~~Cl~  711 (747)
                      ..          ..+..+..........   .+   .         .......+.         ......+.+|+.+||+
T Consensus       240 ~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~  319 (405)
T 3rgf_A          240 QEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLT  319 (405)
T ss_dssp             C------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSC
T ss_pred             cccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHcc
Confidence            22          2222222211111000   00   0         000000000         0013357899999999


Q ss_pred             CCCCCCCCHHHHHHH
Q 044236          712 PEPSSRPSFEDVLWN  726 (747)
Q Consensus       712 ~dP~~RPs~~evl~~  726 (747)
                      .||.+|||+.|++++
T Consensus       320 ~dP~~R~ta~e~L~h  334 (405)
T 3rgf_A          320 MDPIKRITSEQAMQD  334 (405)
T ss_dssp             SSGGGSCCHHHHHTS
T ss_pred             CCcccCCCHHHHhcC
Confidence            999999999999864

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=9.9e-38  Score=341.31  Aligned_cols=262  Identities=15%  Similarity=0.159  Sum_probs=197.5

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC--------CCCcceeeeeeeccC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ--------HPHLVSLLGHCIESG  509 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~--------H~nIv~l~g~~~~~~  509 (747)
                      .++|.+.+.||+|+||.||+|+ ..+++.||||+++.. ....+.+.+|++++++++        |+||+++++++...+
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            3679999999999999999998 467899999999743 334567889999999885        788999999987422


Q ss_pred             CCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceeecCCC-
Q 044236          510 SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVIS-GSFSNRLTTNNILLDEHR-  587 (747)
Q Consensus       510 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~-~ivHrDlk~~NILld~~~-  587 (747)
                          ......++||||+ +|++.+++... ....+++..+..++.||+.||+|||+   . +|+||||||+|||++.++ 
T Consensus       115 ----~~~~~~~lv~e~~-~~~l~~~~~~~-~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~~~~~  185 (397)
T 1wak_A          115 ----VNGTHICMVFEVL-GHHLLKWIIKS-NYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLSVNEQ  185 (397)
T ss_dssp             ----TTEEEEEEEECCC-CCBHHHHHHHT-TTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEECCCHH
T ss_pred             ----CCCceEEEEEecc-CccHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEeccch
Confidence                1135789999999 55676666543 23469999999999999999999999   6 899999999999999775 


Q ss_pred             ------------------------------------------------cEEEecccccccccccchhcccCCCCCccccc
Q 044236          588 ------------------------------------------------IAKLSDYGISIIMEEHEKLEAKGEGPKARYGF  619 (747)
Q Consensus       588 ------------------------------------------------~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~  619 (747)
                                                                      .+||+|||+++.......              
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~--------------  251 (397)
T 1wak_A          186 YIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFT--------------  251 (397)
T ss_dssp             HHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSC--------------
T ss_pred             hhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCc--------------
Confidence                                                            799999999976542211              


Q ss_pred             ceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-------hhhHHHHHhccCcC------------
Q 044236          620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-------AFLLNEMASFGSQD------------  680 (747)
Q Consensus       620 ~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-------~~~~~~~~~~~~~~------------  680 (747)
                       ...++..|+|||++....++.++|||||||++|||+||+.||....       ...+..+.......            
T Consensus       252 -~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  330 (397)
T 1wak_A          252 -EDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSK  330 (397)
T ss_dssp             -SCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGG
T ss_pred             -cCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccc
Confidence             1235678899999988889999999999999999999999986422       11122211111000            


Q ss_pred             -------Ccccccccc---------ccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          681 -------GRRRIVDPV---------VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       681 -------~~~~~~d~~---------~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                             ....+.+..         -....+.+....+.+|+.+||+.||++|||+.|+++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          331 EFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             GTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             cccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence                   000000000         001235667778999999999999999999999985

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=4.4e-37  Score=326.89  Aligned_cols=267  Identities=20%  Similarity=0.255  Sum_probs=197.7

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe--CCCcEEEEEEeeccch--hcHHHHHHHHHHHhcC---CCCCcceeeeeeeccCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL--ENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKL---QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~--~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l---~H~nIv~l~g~~~~~~~  510 (747)
                      +.++|++.+.||+|+||.||+|+.  .+|+.||||+++....  .....+.+|+.+++.+   +||||++++++|.... 
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~-   87 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR-   87 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE-
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc-
Confidence            457899999999999999999996  4689999999874321  2223556777777665   8999999999987321 


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  590 (747)
                        .......++||||++ |+|.+++.... ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+|
T Consensus        88 --~~~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~~~k  160 (326)
T 1blx_A           88 --TDRETKLTLVFEHVD-QDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIK  160 (326)
T ss_dssp             --CSSEEEEEEEEECCS-CBHHHHHHHSC-TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEE
T ss_pred             --cCCCceEEEEEecCC-CCHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCCCEE
Confidence              011357899999998 69999987542 3458999999999999999999999   7999999999999999999999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hh
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FL  669 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~  669 (747)
                      |+|||+++........             ....++..|++||.+....++.++|||||||++|||++|+.||..... ..
T Consensus       161 l~Dfg~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~  227 (326)
T 1blx_A          161 LADFGLARIYSFQMAL-------------TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQ  227 (326)
T ss_dssp             ECSCCSCCCCCGGGGG-------------CCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             EecCcccccccCCCCc-------------cccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence            9999999765432211             112346678899999888899999999999999999999999875443 22


Q ss_pred             HHHHHhccCcCCccc----------ccc---ccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          670 LNEMASFGSQDGRRR----------IVD---PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~----------~~d---~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      +..+...........          ...   ..............+.+++.+||+.||.+|||+.|+++
T Consensus       228 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          228 LGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             HHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            333222111000000          000   00001111223345889999999999999999999985

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=2.2e-37  Score=333.14  Aligned_cols=275  Identities=17%  Similarity=0.248  Sum_probs=198.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++.... ......+.+|++++++++||||+++++++....   ....
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~~   86 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDS---FENF   86 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSC---STTC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccc---cCcc
Confidence            46789999999999999999995 469999999997433 334567889999999999999999999886532   1123


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||++ |+|.+++..    ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        87 ~~~~lv~e~~~-~~L~~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  158 (353)
T 2b9h_A           87 NEVYIIQELMQ-TDLHRVIST----QMLSDDHIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGL  158 (353)
T ss_dssp             CCEEEEECCCS-EEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEeccC-ccHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEEeccc
Confidence            57899999997 589988864    358999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      ++..............  ...+.....++..|+|||++.. ..++.++|||||||++|||++|+.||...... .+..+.
T Consensus       159 a~~~~~~~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  236 (353)
T 2b9h_A          159 ARIIDESAADNSEPTG--QQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIF  236 (353)
T ss_dssp             CEECC------------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred             ccccccccccccCccc--cccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHH
Confidence            9876533221110000  0011122356778999997654 67899999999999999999999998755432 222221


Q ss_pred             hccCcCC---cccccc-----------ccc----cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDG---RRRIVD-----------PVV----LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~---~~~~~d-----------~~~----~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......   ......           +..    .....+.....+.+++.+||+.||++|||+.|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          237 GIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             HHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            1111000   000000           000    000011233458899999999999999999999864

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=3.6e-37  Score=333.57  Aligned_cols=262  Identities=16%  Similarity=0.209  Sum_probs=192.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+.++++++||||+++++++...+..  ..
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~--~~  118 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSL--RN  118 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSS--TT
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCc--cc
Confidence            36788899999999999999984 57999999999753  233457788999999999999999999999764311  11


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||+. |+|.+++..     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       119 ~~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg  189 (371)
T 4exu_A          119 FYDFYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFG  189 (371)
T ss_dssp             CCCCEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECSTT
T ss_pred             ceeEEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEEEEecC
Confidence            224599999997 588887743     38999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      +++.......               ...++..|+|||++.. ..++.++|||||||++|||++|+.||..... +.+..+
T Consensus       190 ~a~~~~~~~~---------------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i  254 (371)
T 4exu_A          190 LARHADAEMT---------------GYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQI  254 (371)
T ss_dssp             CC-----------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             cccccccCcC---------------CcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence            9975432211               0134567889998766 6789999999999999999999999975442 222222


Q ss_pred             HhccCcCCc---ccc-----------cccccc---CCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGR---RRI-----------VDPVVL---TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~---~~~-----------~d~~~~---~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........   ..+           ......   ....+.....+.+++.+||+.||++|||+.|+++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          255 LKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             HHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence            221111000   000           000000   00011223458999999999999999999999864

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=4e-37  Score=327.43  Aligned_cols=257  Identities=18%  Similarity=0.274  Sum_probs=176.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHH-HHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLD-FLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~-~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|+..+.||+|+||.||+|+. .+|+.||||+++... ......+..|+. +++.++||||+++++++...       
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~-------   93 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFRE-------   93 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECS-------
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeC-------
Confidence            36788899999999999999995 579999999997542 233445566666 77888999999999999863       


Q ss_pred             CceEEEEEeccCCCCcccccccC--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceeecCCCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDRLAILIGVAKAVHFLHSSVIS-GSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~-~ivHrDlk~~NILld~~~~~kl~  592 (747)
                       +..++||||+++ +|.+++...  .....+++..+..++.|++.||.|||+   . +|+||||||+||+++.++.+||+
T Consensus        94 -~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~  168 (327)
T 3aln_A           94 -GDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLC  168 (327)
T ss_dssp             -SEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEEC
T ss_pred             -CceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEc
Confidence             478999999985 777776521  123568999999999999999999999   6 89999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeee----eccCCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVV----DIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      |||+++........             ....++..|++||.+    ....++.++|||||||++|||++|+.||......
T Consensus       169 Dfg~~~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  235 (327)
T 3aln_A          169 DFGISGQLVDSIAK-------------TRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV  235 (327)
T ss_dssp             CCSSSCC-------------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC---
T ss_pred             cCCCceeccccccc-------------ccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH
Confidence            99999765432211             012356678899988    4567899999999999999999999998753211


Q ss_pred             hHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                       ...+.... ...     .+.+...........+.+++.+||+.||++|||+.|+++.-
T Consensus       236 -~~~~~~~~-~~~-----~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp  287 (327)
T 3aln_A          236 -FDQLTQVV-KGD-----PPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHP  287 (327)
T ss_dssp             -----CCCC-CSC-----CCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSH
T ss_pred             -HHHHHHHh-cCC-----CCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhCh
Confidence             11111110 000     01111111112233488999999999999999999998643

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=2.3e-37  Score=327.11  Aligned_cols=254  Identities=17%  Similarity=0.221  Sum_probs=192.0

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCC--CCCcceeeeeeeccCCCCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQ--HPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~--H~nIv~l~g~~~~~~~~~~  513 (747)
                      ..++|++.+.||+|+||.||+|+..+++.||||++...  .....+.+.+|++++++++  ||||+++++++...     
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~-----  100 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-----  100 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECS-----
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecC-----
Confidence            45679999999999999999999888999999999743  3345578899999999997  59999999998763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++||| +.+|+|.+++...   ..+++..+..++.|+++||.|||+   .+|+||||||+|||+++ +.+||+|
T Consensus       101 ---~~~~lv~e-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~-~~~kL~D  169 (313)
T 3cek_A          101 ---QYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD-GMLKLID  169 (313)
T ss_dssp             ---SEEEEEEC-CCSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET-TEEEECC
T ss_pred             ---CEEEEEEe-cCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC-CeEEEee
Confidence               47899999 5678999999763   468999999999999999999999   78999999999999974 8999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-----------cCCCcCCceeehhHHHHHHhhCCCCC
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-----------QRTKLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----------~~~s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                      ||+++..........          .....++..|+|||.+..           ..++.++|||||||++|||++|+.||
T Consensus       170 fg~~~~~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf  239 (313)
T 3cek_A          170 FGIANQMQPDTTSVV----------KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF  239 (313)
T ss_dssp             CSSSCC------------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ccccccccCcccccc----------ccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCch
Confidence            999976543221110          011245667888888754           46888999999999999999999998


Q ss_pred             CCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ....... ..+........     ........    ...+.+++.+||+.||.+|||+.|+++.-
T Consensus       240 ~~~~~~~-~~~~~~~~~~~-----~~~~~~~~----~~~l~~li~~~l~~dp~~Rps~~ell~h~  294 (313)
T 3cek_A          240 QQIINQI-SKLHAIIDPNH-----EIEFPDIP----EKDLQDVLKCCLKRDPKQRISIPELLAHP  294 (313)
T ss_dssp             TTCCSHH-HHHHHHHCTTS-----CCCCCCCS----CHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             hhHHHHH-HHHHHHHhccc-----ccCCcccc----hHHHHHHHHHHccCCcccCcCHHHHhcCc
Confidence            6532211 11111111110     01111122    23488999999999999999999999754

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=7.7e-37  Score=318.91  Aligned_cols=251  Identities=19%  Similarity=0.234  Sum_probs=196.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+++.||||++....  ....+.+.+|++++++++||||+++++++...       
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-------   93 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-------   93 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-------
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCC-------
Confidence            46799999999999999999995 478999999997432  34567889999999999999999999998763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC---CcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH---RIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~  592 (747)
                       ...++||||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.+   +.+||+
T Consensus        94 -~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~  166 (287)
T 2wei_A           94 -SSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKII  166 (287)
T ss_dssp             -SEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             -CeEEEEEEccCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEEe
Confidence             4789999999999999888653   358999999999999999999999   799999999999999754   479999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+++........             ....++..|++||.+.. .++.++|||||||++|||++|+.|+..........
T Consensus       167 Dfg~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~  232 (287)
T 2wei_A          167 DFGLSTCFQQNTKM-------------KDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILK  232 (287)
T ss_dssp             STTGGGTBCCCSSC-------------SCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             ccCcceeecCCCcc-------------ccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            99998755332110             01134567888987754 58999999999999999999999987654333222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........     .+......++.    .+.+++.+||+.||.+|||+.|+++.
T Consensus       233 ~~~~~~~~-----~~~~~~~~~~~----~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          233 RVETGKYA-----FDLPQWRTISD----DAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             HHHHCCCC-----CCSGGGTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             HHHcCCCC-----CCchhhhhcCH----HHHHHHHHHcccChhhCcCHHHHhcC
Confidence            11111100     01111122333    48899999999999999999999974

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=3.1e-37  Score=329.56  Aligned_cols=258  Identities=19%  Similarity=0.253  Sum_probs=196.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe--CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCC------CcceeeeeeeccCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL--ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHP------HLVSLLGHCIESGSQ  511 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~------nIv~l~g~~~~~~~~  511 (747)
                      ++|++.+.||+|+||.||+|..  .+++.||||+++... ...+.+.+|+++++.++|+      +|+++++++...   
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~---   89 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH---   89 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET---
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC---
Confidence            5789999999999999999985  468999999997432 3456788999999888665      499999998763   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC------
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE------  585 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~------  585 (747)
                           ...++||||+ +++|.+++.... ...+++..+..++.|+++||+|||+   .+|+||||||+|||++.      
T Consensus        90 -----~~~~lv~e~~-~~~l~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~  159 (339)
T 1z57_A           90 -----GHICIVFELL-GLSTYDFIKENG-FLPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEA  159 (339)
T ss_dssp             -----TEEEEEEECC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEEE
T ss_pred             -----CcEEEEEcCC-CCCHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeccccccc
Confidence                 4899999999 889999987642 3468999999999999999999999   89999999999999987      


Q ss_pred             -------------CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHH
Q 044236          586 -------------HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL  652 (747)
Q Consensus       586 -------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl  652 (747)
                                   ++.+||+|||+++.......               ...++..|++||++....++.++|||||||++
T Consensus       160 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---------------~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  224 (339)
T 1z57_A          160 YNPKIKRDERTLINPDIKVVDFGSATYDDEHHS---------------TLVSTRHYRAPEVILALGWSQPCDVWSIGCIL  224 (339)
T ss_dssp             EC----CEEEEESCCCEEECCCSSCEETTSCCC---------------SSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHH
T ss_pred             cCCccccccccccCCCceEeeCcccccCccccc---------------cccCCccccChHHhhCCCCCcchhhHHHHHHH
Confidence                         66899999999975432110               12346678999999888899999999999999


Q ss_pred             HHHhhCCCCCCCChhhh-HHHHHhccCcCC--------cccc---------------------cccc-ccCCCCHHHHHH
Q 044236          653 LESLVGPIVTGKGEAFL-LNEMASFGSQDG--------RRRI---------------------VDPV-VLTTCSQESLSI  701 (747)
Q Consensus       653 ~Elltg~~p~~~~~~~~-~~~~~~~~~~~~--------~~~~---------------------~d~~-~~~~~~~~~~~~  701 (747)
                      |||++|..||....... ...+........        ....                     ..+. ............
T Consensus       225 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (339)
T 1z57_A          225 IEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHER  304 (339)
T ss_dssp             HHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHH
T ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHH
Confidence            99999999987544322 222111110000        0000                     0000 000112345667


Q ss_pred             HHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          702 VVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       702 ~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +.+++.+||+.||.+|||+.|+++.
T Consensus       305 l~~li~~~L~~dP~~Rpt~~ell~h  329 (339)
T 1z57_A          305 LFDLIQKMLEYDPAKRITLREALKH  329 (339)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             HHHHHHHHhCcCcccccCHHHHhcC
Confidence            8999999999999999999999853

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=326.06  Aligned_cols=260  Identities=17%  Similarity=0.195  Sum_probs=193.5

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|.+.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+.++++++||||+++++++...+..  ...
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~--~~~  101 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSL--RNF  101 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSG--GGC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccc--ccc
Confidence            5788899999999999999995 56999999999643  233456788999999999999999999998764310  011


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||++ |+|.+++..     .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~  172 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGL  172 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred             eeEEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEeeccc
Confidence            24699999997 588888753     38999999999999999999999   7899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~  674 (747)
                      ++.......               ...++..|++||.+.. ..++.++|||||||++|||++|+.||..... ..+..+.
T Consensus       173 ~~~~~~~~~---------------~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~  237 (353)
T 3coi_A          173 ARHADAEMT---------------GYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQIL  237 (353)
T ss_dssp             TTC-----------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHH
T ss_pred             ccCCCCCcc---------------ccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            975432110               1234567889998766 6789999999999999999999999875442 2222222


Q ss_pred             hccCcCC------------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDG------------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~------------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......                  ......+.. ..........+.+++.+||+.||++|||+.|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          238 KVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDF-TQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             HHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCT-TTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccH-HHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            1110000                  000000000 11112334458999999999999999999999864

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=7.6e-37  Score=332.43  Aligned_cols=261  Identities=18%  Similarity=0.183  Sum_probs=195.5

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CC-----CcceeeeeeeccCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HP-----HLVSLLGHCIESGS  510 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~-----nIv~l~g~~~~~~~  510 (747)
                      ..++|++.+.||+|+||.||+|+. .+++.||||+++.. ......+.+|+.+++.++ |+     +|+++++++...  
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~--  128 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR--  128 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET--
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC--
Confidence            357899999999999999999985 56899999999743 334567788999888875 55     499999998773  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec--CCCc
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD--EHRI  588 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld--~~~~  588 (747)
                            ...++||||++ |+|.+++.... ...+++..+..++.|++.||.|||+.. .+|+||||||+|||++  .++.
T Consensus       129 ------~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~-~~ivHrDlkp~NIll~~~~~~~  199 (382)
T 2vx3_A          129 ------NHLCLVFEMLS-YNLYDLLRNTN-FRGVSLNLTRKFAQQMCTALLFLATPE-LSIIHCDLKPENILLCNPKRSA  199 (382)
T ss_dssp             ------TEEEEEEECCC-CBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHTSTT-TCEECCCCSGGGEEESSTTSCC
T ss_pred             ------CceEEEEecCC-CCHHHHHhhcC-cCCCCHHHHHHHHHHHHHHHHHhccCC-CCEEcCCCCcccEEEecCCCCc
Confidence                  48999999996 59999987642 245899999999999999999999521 6899999999999994  5788


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-  667 (747)
                      +||+|||+++.......               ...++..|+|||++....++.++|||||||++|||+||+.||..... 
T Consensus       200 ~kL~DFG~a~~~~~~~~---------------~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~  264 (382)
T 2vx3_A          200 IKIVDFGSSCQLGQRIY---------------QYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEV  264 (382)
T ss_dssp             EEECCCTTCEETTCCCC---------------SSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             EEEEeccCceecccccc---------------cccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            99999999976532110               12346678999999888999999999999999999999999875432 


Q ss_pred             hhHHHHHhccCcCC---------cc----cccc-----------------ccc--------------------cCCCCHH
Q 044236          668 FLLNEMASFGSQDG---------RR----RIVD-----------------PVV--------------------LTTCSQE  697 (747)
Q Consensus       668 ~~~~~~~~~~~~~~---------~~----~~~d-----------------~~~--------------------~~~~~~~  697 (747)
                      ..+..+........         ..    .+.+                 +..                    .......
T Consensus       265 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  344 (382)
T 2vx3_A          265 DQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVA  344 (382)
T ss_dssp             HHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHH
T ss_pred             HHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccch
Confidence            33333222110000         00    0000                 000                    0001123


Q ss_pred             HHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          698 SLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       698 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ....+.+|+.+||+.||++|||+.|+++
T Consensus       345 ~~~~~~dli~~mL~~dP~~Rpta~e~L~  372 (382)
T 2vx3_A          345 DYLKFKDLILRMLDYDPKTRIQPYYALQ  372 (382)
T ss_dssp             HHHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             hhHHHHHHHHHhcCCChhhCCCHHHHhc
Confidence            3457899999999999999999999985

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=4.5e-37  Score=328.10  Aligned_cols=258  Identities=15%  Similarity=0.188  Sum_probs=173.0

Q ss_pred             hhCCCccc-cccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLS-FMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~-~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|.+.+ .||+|+||.||+|+. .+|+.||||++....    .........++.++||||+++++++....    ...
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~----~~~   98 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMH----HGK   98 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEE----TTE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhcc----CCC
Confidence            56788855 699999999999995 469999999987422    11222233456779999999999987522    113


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---CCcEEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---HRIAKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~D  593 (747)
                      ...++||||+++|+|.+++.... ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.   ++.+||+|
T Consensus        99 ~~~~lv~e~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~~~kl~D  174 (336)
T 3fhr_A           99 RCLLIIMECMEGGELFSRIQERG-DQAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTD  174 (336)
T ss_dssp             EEEEEEEECCTTEEHHHHHHTC--CCCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred             ceEEEEEeccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCceEEEec
Confidence            46899999999999999997642 3469999999999999999999999   89999999999999976   45699999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++........              ...++..|++||.+....++.++|||||||++|||++|+.||...........
T Consensus       175 fg~~~~~~~~~~~--------------~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~  240 (336)
T 3fhr_A          175 FGFAKETTQNALQ--------------TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG  240 (336)
T ss_dssp             CTTCEEC------------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred             cccceeccccccc--------------cCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh
Confidence            9999754322111              12446678999999888899999999999999999999999865432221110


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                      ............ .......+    ...+.+++.+||+.||.+|||+.|+++.-
T Consensus       241 ~~~~~~~~~~~~-~~~~~~~~----~~~~~~li~~~L~~dP~~Rpt~~ell~hp  289 (336)
T 3fhr_A          241 MKRRIRLGQYGF-PNPEWSEV----SEDAKQLIRLLLKTDPTERLTITQFMNHP  289 (336)
T ss_dssp             ----------CC-CTTTSTTC----CHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred             HHHhhhcccccc-CchhhccC----CHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence            000000000000 11111222    34488999999999999999999999754

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=9.2e-37  Score=337.04  Aligned_cols=253  Identities=17%  Similarity=0.187  Sum_probs=183.2

Q ss_pred             CCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      |...+.||+|+||+||.+...+|+.||||++...   ..+.+.+|+++++++ +|||||++++++...        ...+
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~--------~~~~   85 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTD--------RFLY   85 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECS--------SEEE
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecC--------CeEE
Confidence            3446789999999998776667999999998743   235678899999876 899999999988763        4789


Q ss_pred             EEEeccCCCCcccccccCCCC-C---CCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCC----------
Q 044236          521 LVYEYIPNGSYRAHLSENCPE-N---VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH----------  586 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~-~---~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~----------  586 (747)
                      +|||||. |+|.+++...... .   ..++..+..++.||+.||+|||+   .+|+||||||+|||++.+          
T Consensus        86 lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~~~~~~~~  161 (434)
T 2rio_A           86 IALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTG  161 (434)
T ss_dssp             EEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEECCHHHHSCCTTC
T ss_pred             EEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCcccccccccC
Confidence            9999995 6999999754211 1   11333457899999999999999   899999999999999754          


Q ss_pred             ---CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-------cCCCcCCceeehhHHHHHHh
Q 044236          587 ---RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-------QRTKLEDDVYNFGFILLESL  656 (747)
Q Consensus       587 ---~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------~~~s~k~DVwSfGvvl~Ell  656 (747)
                         +.+||+|||+++...........        ......++..|+|||++..       ..++.++|||||||++|||+
T Consensus       162 ~~~~~~kL~DFG~a~~~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ell  233 (434)
T 2rio_A          162 AENLRILISDFGLCKKLDSGQSSFRT--------NLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYIL  233 (434)
T ss_dssp             CCSCEEEECCCTTCEECCC----------------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEcccccceecCCCCcccee--------eecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHH
Confidence               58999999999876543221100        0112356778999998865       67899999999999999999


Q ss_pred             h-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          657 V-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       657 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      | |+.||+.................        .............+.+++.+||+.||.+|||+.||++
T Consensus       234 t~g~~Pf~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          234 SKGKHPFGDKYSRESNIIRGIFSLD--------EMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             TTSCCTTCSTTTHHHHHHHTCCCCC--------CCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hCCCCCCCCchhhHHHHhcCCCCcc--------cccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            9 89999754332222111111100        0111123455677999999999999999999999985

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.5e-36  Score=316.20  Aligned_cols=231  Identities=15%  Similarity=0.113  Sum_probs=179.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||.||+|+. .+|+.||||++....   ....+.+.+|+.++++++||||+++++++...       
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-------  103 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTR-------  103 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-------
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEEC-------
Confidence            5689999999999999999995 458999999997542   23347889999999999999999999999873       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++||||+++++|.++++..     ....+...++.|++.||+|||+   .+|+||||||+|||++.++.+||+++|
T Consensus       104 -~~~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~  174 (286)
T 3uqc_A          104 -AGGLVVAEWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPA  174 (286)
T ss_dssp             -TEEEEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCC
T ss_pred             -CcEEEEEEecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEecc
Confidence             4789999999999999998542     3455788899999999999999   899999999999999999999998665


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      ..                                       ..++.++|||||||++|||+||+.||........  + .
T Consensus       175 ~~---------------------------------------~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~--~-~  212 (286)
T 3uqc_A          175 TM---------------------------------------PDANPQDDIRGIGASLYALLVNRWPLPEAGVRSG--L-A  212 (286)
T ss_dssp             CC---------------------------------------TTCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCC--S-E
T ss_pred             cc---------------------------------------CCCCchhHHHHHHHHHHHHHHCCCCCCcCCcchh--h-H
Confidence            32                                       1246788999999999999999999875432110  0 0


Q ss_pred             ccCcCCccccccc-cccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          676 FGSQDGRRRIVDP-VVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       676 ~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      ............+ .....++    ..+.+++.+||+.||.+| |+.|+++.|+.+...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~----~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~  266 (286)
T 3uqc_A          213 PAERDTAGQPIEPADIDRDIP----FQISAVAARSVQGDGGIR-SASTLLNLMQQATAV  266 (286)
T ss_dssp             ECCBCTTSCBCCHHHHCTTSC----HHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred             HHHHHhccCCCChhhcccCCC----HHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence            0000000000000 1112233    348899999999999999 999999999987543

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=8.3e-37  Score=331.14  Aligned_cols=262  Identities=15%  Similarity=0.171  Sum_probs=197.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-----------CCCcceeeeeeec
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-----------HPHLVSLLGHCIE  507 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-----------H~nIv~l~g~~~~  507 (747)
                      ++|.+.+.||+|+||.||+|+. .+++.||||++... ....+.+.+|+.++++++           ||||+++++++..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            5788999999999999999994 67999999999743 334567888999998886           8999999999876


Q ss_pred             cCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceeec--
Q 044236          508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVIS-GSFSNRLTTNNILLD--  584 (747)
Q Consensus       508 ~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~-~ivHrDlk~~NILld--  584 (747)
                      .+    ......++||||+ +++|.+++.... ...+++..+..++.||+.||+|||+   . +|+||||||+|||++  
T Consensus        98 ~~----~~~~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~~~  168 (373)
T 1q8y_A           98 KG----PNGVHVVMVFEVL-GENLLALIKKYE-HRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLMEIV  168 (373)
T ss_dssp             EE----TTEEEEEEEECCC-CEEHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEEEE
T ss_pred             cC----CCCceEEEEEecC-CCCHHHHHHHhh-ccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEecc
Confidence            32    1134789999999 889999987542 3458999999999999999999999   6 899999999999994  


Q ss_pred             ----CCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCC
Q 044236          585 ----EHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI  660 (747)
Q Consensus       585 ----~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~  660 (747)
                          ..+.+||+|||+++.......               ...++..|+|||++....++.++|||||||++|||+||+.
T Consensus       169 ~~~~~~~~~kl~Dfg~a~~~~~~~~---------------~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~  233 (373)
T 1q8y_A          169 DSPENLIQIKIADLGNACWYDEHYT---------------NSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDF  233 (373)
T ss_dssp             ETTTTEEEEEECCCTTCEETTBCCC---------------SCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCcCcceEEEcccccccccCCCCC---------------CCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCC
Confidence                445899999999976543211               1234667899999988889999999999999999999999


Q ss_pred             CCCCChh-------hhHHHHHhccCcC-------------------Ccccccccc---------ccCCCCHHHHHHHHHH
Q 044236          661 VTGKGEA-------FLLNEMASFGSQD-------------------GRRRIVDPV---------VLTTCSQESLSIVVSI  705 (747)
Q Consensus       661 p~~~~~~-------~~~~~~~~~~~~~-------------------~~~~~~d~~---------~~~~~~~~~~~~~~~l  705 (747)
                      ||.....       ..+..+.......                   ....+....         -....+......+.++
T Consensus       234 pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  313 (373)
T 1q8y_A          234 LFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDF  313 (373)
T ss_dssp             CC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHH
Confidence            9874321       1121211110000                   000000000         0112456677889999


Q ss_pred             HhHccCCCCCCCCCHHHHHHH
Q 044236          706 TNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       706 ~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +.+||+.||++|||+.|+++.
T Consensus       314 i~~~L~~dP~~Rpt~~ell~h  334 (373)
T 1q8y_A          314 LSPMLQLDPRKRADAGGLVNH  334 (373)
T ss_dssp             HGGGGCSSTTTCBCHHHHHTC
T ss_pred             HHHHhccCccccCCHHHHhhC
Confidence            999999999999999999864

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.1e-36  Score=317.54  Aligned_cols=237  Identities=15%  Similarity=0.228  Sum_probs=177.3

Q ss_pred             hhCCCcc-ccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHH-hcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSL-SFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFL-SKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~-~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l-~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|.+. +.||+|+||.||+|+. .+++.||||+++.     ...+.+|++++ +..+||||+++++++....    ..
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~----~~   86 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLY----AG   86 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE----TT
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhc----CC
Confidence            4567776 7799999999999985 6789999999863     24567888887 6669999999999986521    11


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---CCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---HRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~  592 (747)
                      ....++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+   .+|+||||||+|||++.   ++.+||+
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl~  162 (299)
T 3m2w_A           87 RKCLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLT  162 (299)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred             CceEEEEEeecCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEEe
Confidence            347899999999999999997642 3469999999999999999999999   89999999999999998   7899999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE  672 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~  672 (747)
                      |||+++...                                  ...++.++|||||||++|||+||+.||..........
T Consensus       163 Dfg~a~~~~----------------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~  208 (299)
T 3m2w_A          163 DFGFAKETT----------------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP  208 (299)
T ss_dssp             CCTTCEECT----------------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------C
T ss_pred             ccccccccc----------------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhH
Confidence            999985432                                  1235668899999999999999999986543221100


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL  727 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  727 (747)
                        ... .. . ..................+.+++.+||+.||.+|||+.|++++-
T Consensus       209 --~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp  258 (299)
T 3m2w_A          209 --GMK-TR-I-RMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHP  258 (299)
T ss_dssp             --CSC-CS-S-CTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             --HHH-HH-H-hhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcCh
Confidence              000 00 0 00000000000012234588999999999999999999999754

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-36  Score=334.56  Aligned_cols=250  Identities=16%  Similarity=0.180  Sum_probs=183.4

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      .+|...+.||+|+||+||.....+|+.||||++.....   ..+.+|+++|+++ +|||||++++++...        ..
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~--------~~   92 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDR--------QF   92 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEET--------TE
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecC--------CE
Confidence            45888899999999997655556789999999864322   2346799999999 799999999998763        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-----CCcEEEec
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-----HRIAKLSD  593 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-----~~~~kl~D  593 (747)
                      .++|||||+ |+|.+++...  ...+.+..+..++.||++||+|||+   .+|+||||||+|||++.     ...+||+|
T Consensus        93 ~~lv~E~~~-g~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~D  166 (432)
T 3p23_A           93 QYIAIELCA-ATLQEYVEQK--DFAHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISD  166 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSS--SCCCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECC
T ss_pred             EEEEEECCC-CCHHHHHHhc--CCCccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEec
Confidence            899999996 5999998764  2234455667899999999999999   78999999999999943     34688999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeee---ccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhh
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD---IQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFL  669 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~  669 (747)
                      ||+++...........         .....++..|+|||++.   ...++.++|||||||++|||+| |+.|++......
T Consensus       167 FG~a~~~~~~~~~~~~---------~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~  237 (432)
T 3p23_A          167 FGLCKKLAVGRHSFSR---------RSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ  237 (432)
T ss_dssp             TTEEECC---------------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH
T ss_pred             ccceeeccCCCcceee---------ccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence            9999766433211100         01134677899999887   4567889999999999999999 899987554433


Q ss_pred             HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .........    .....      ........+.+++.+||+.||.+|||+.||++
T Consensus       238 ~~~~~~~~~----~~~~~------~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          238 ANILLGACS----LDCLH------PEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             HHHHTTCCC----CTTSC------TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHhccCC----ccccC------ccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            332211110    00011      11233445789999999999999999999984

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=318.25  Aligned_cols=250  Identities=20%  Similarity=0.283  Sum_probs=175.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch--hcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++.....  ...+.+..+..+++.++||||+++++++...       
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-------   96 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITN-------   96 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-------
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecC-------
Confidence            46788899999999999999996 4799999999975432  2223344555678889999999999999863       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceeecCCCcEEEecc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVIS-GSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~-~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                       ...++||||+ ++.+..+....  ...+++..+..++.|+++||.|||+   . +|+||||||+||+++.++.+||+||
T Consensus        97 -~~~~lv~e~~-~~~~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~df  169 (318)
T 2dyl_A           97 -TDVFIAMELM-GTCAEKLKKRM--QGPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKPSNILLDERGQIKLCDF  169 (318)
T ss_dssp             -SEEEEEECCC-SEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCGGGEEECTTSCEEECCC
T ss_pred             -CcEEEEEecc-CCcHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCHHHEEECCCCCEEEEEC
Confidence             4789999999 44444444322  3468999999999999999999998   5 8999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCCh--h
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGE--A  667 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~--~  667 (747)
                      |+++.........             ...++..|++||.+.     ...++.++|||||||++|||++|+.||....  .
T Consensus       170 g~~~~~~~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  236 (318)
T 2dyl_A          170 GISGRLVDDKAKD-------------RSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDF  236 (318)
T ss_dssp             TTC---------------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHH
T ss_pred             CCchhccCCcccc-------------ccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccH
Confidence            9996654322110             123566788898873     4568899999999999999999999987532  2


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....+.... .   ...  + ....++.    .+.+++.+||+.||.+|||+.|+++.
T Consensus       237 ~~~~~~~~~~-~---~~~--~-~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          237 EVLTKVLQEE-P---PLL--P-GHMGFSG----DFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             HHHHHHHHSC-C---CCC--C-SSSCCCH----HHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             HHHHHHhccC-C---CCC--C-ccCCCCH----HHHHHHHHHccCChhHCcCHHHHhhC
Confidence            2222222110 0   000  0 0112333    48899999999999999999999863

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.6e-36  Score=326.32  Aligned_cols=259  Identities=17%  Similarity=0.193  Sum_probs=194.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCC-cEEEEEEeeccchhcHHHHHHHHHHHhcCCCCC------cceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENG-TYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH------LVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g-~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~n------Iv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||.||+|+. .++ +.||||+++.. ....+.+.+|++++++++|++      ++.+++++...  
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~--   94 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH--   94 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET--
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC--
Confidence            36789999999999999999985 344 79999999743 234567888999999987766      89999888763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceee-------
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILL-------  583 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl-------  583 (747)
                            ...++||||+ +|++.+++.... ...+++..+..++.||+.||+|||+   .+|+||||||+|||+       
T Consensus        95 ------~~~~lv~e~~-~~~l~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~  163 (355)
T 2eu9_A           95 ------GHMCIAFELL-GKNTFEFLKENN-FQPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFET  163 (355)
T ss_dssp             ------TEEEEEEECC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEE
T ss_pred             ------CeEEEEEecc-CCChHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecccccc
Confidence                  4789999999 667777776532 3469999999999999999999999   899999999999999       


Q ss_pred             ------------cCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHH
Q 044236          584 ------------DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI  651 (747)
Q Consensus       584 ------------d~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvv  651 (747)
                                  +.++.+||+|||+++.......               ...++..|+|||++....++.++|||||||+
T Consensus       164 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---------------~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i  228 (355)
T 2eu9_A          164 LYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHT---------------TIVATRHYRPPEVILELGWAQPCDVWSIGCI  228 (355)
T ss_dssp             EECCC-CCCEEEESCCCEEECCCTTCEETTSCCC---------------SSCSCGGGCCHHHHTTCCCCTHHHHHHHHHH
T ss_pred             cccccccccccccCCCcEEEeecCcccccccccc---------------CCcCCCcccCCeeeecCCCCCccchHHHHHH
Confidence                        6678999999999975332110               1245667899999988899999999999999


Q ss_pred             HHHHhhCCCCCCCChhhh-HHHHHhccCcCC---------ccccccc-------------------cc--cCCCCHHHHH
Q 044236          652 LLESLVGPIVTGKGEAFL-LNEMASFGSQDG---------RRRIVDP-------------------VV--LTTCSQESLS  700 (747)
Q Consensus       652 l~Elltg~~p~~~~~~~~-~~~~~~~~~~~~---------~~~~~d~-------------------~~--~~~~~~~~~~  700 (747)
                      +|||++|+.||....... ...+........         .......                   ..  ..........
T Consensus       229 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (355)
T 2eu9_A          229 LFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHV  308 (355)
T ss_dssp             HHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHH
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHH
Confidence            999999999997544322 222211110000         0000000                   00  0011223455


Q ss_pred             HHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          701 IVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       701 ~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+.+++.+||+.||++|||+.|+++.
T Consensus       309 ~l~~li~~~L~~dP~~Rpt~~e~l~h  334 (355)
T 2eu9_A          309 QLFDLMRRMLEFDPAQRITLAEALLH  334 (355)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            78999999999999999999999853

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=1.5e-36  Score=344.58  Aligned_cols=267  Identities=16%  Similarity=0.115  Sum_probs=197.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|.+.+.||+|+||.||+|.. .+|+.||||+++.. .....+.+.+|++++++++|||||++++++.....  ....
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~--~~~~   90 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQK--LAPN   90 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCC--CCTT
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeeccccc--ccCC
Confidence            36799999999999999999985 56899999998743 34445778999999999999999999998765221  1124


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc---EEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI---AKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---~kl~D  593 (747)
                      ...++||||+++|+|.+++........+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.   +||+|
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~D  167 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIID  167 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEECS
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEcc
Confidence            5779999999999999999865444568999999999999999999999   89999999999999996654   99999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+++........             ....++..|++||.+....++.++|||||||++|||++|..||...... ..+.
T Consensus       168 FG~a~~~~~~~~~-------------~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~-~~~~  233 (676)
T 3qa8_A          168 LGYAKELDQGELC-------------TEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP-VQWH  233 (676)
T ss_dssp             CCCCCBTTSCCCC-------------CCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH-HHSS
T ss_pred             ccccccccccccc-------------ccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch-hhhh
Confidence            9999765432211             0124566789999998889999999999999999999999998654221 1110


Q ss_pred             Hhc--------cCcC---Cccccc-cccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHH
Q 044236          674 ASF--------GSQD---GRRRIV-DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL  724 (747)
Q Consensus       674 ~~~--------~~~~---~~~~~~-d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  724 (747)
                      ...        ....   +..... ........+......+.+++.+||+.||++|||+.|++
T Consensus       234 ~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL  296 (676)
T 3qa8_A          234 GKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP  296 (676)
T ss_dssp             TTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred             hhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence            000        0000   000000 00112234455677799999999999999999998843

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=6.2e-37  Score=324.84  Aligned_cols=242  Identities=19%  Similarity=0.272  Sum_probs=192.4

Q ss_pred             HhhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchh------cHHHHHHHHHHHhcCC--CCCcceeeeeeecc
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKY------SIQNLKVRLDFLSKLQ--HPHLVSLLGHCIES  508 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~------~~~~~~~E~~~l~~l~--H~nIv~l~g~~~~~  508 (747)
                      ..++|++.+.||+|+||.||+|+ ..+++.||||+++.....      ..+.+.+|+.++++++  ||||+++++++...
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            34679999999999999999998 467899999999753211      2245677999999996  59999999999763


Q ss_pred             CCCCCCCCceEEEEEeccCC-CCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec-CC
Q 044236          509 GSQDDSNTNKVFLVYEYIPN-GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD-EH  586 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~  586 (747)
                              ...++||||+.+ ++|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++ .+
T Consensus       121 --------~~~~lv~e~~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~  186 (320)
T 3a99_A          121 --------DSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNR  186 (320)
T ss_dssp             --------SEEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTT
T ss_pred             --------CcEEEEEEcCCCCccHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeCCC
Confidence                    478999999976 8999998763   458999999999999999999999   8999999999999999 78


Q ss_pred             CcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCC
Q 044236          587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKG  665 (747)
Q Consensus       587 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~  665 (747)
                      +.+||+|||+++........              ...++..|++||.+....+ +.++|||||||++|||++|+.||...
T Consensus       187 ~~~kL~Dfg~~~~~~~~~~~--------------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  252 (320)
T 3a99_A          187 GELKLIDFGSGALLKDTVYT--------------DFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD  252 (320)
T ss_dssp             TEEEECCCTTCEECCSSCBC--------------CCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             CCEEEeeCcccccccccccc--------------CCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh
Confidence            99999999999765432110              1235667889998876665 68899999999999999999998643


Q ss_pred             hhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..     .....          ......++.    .+.+++.+||+.||++|||+.||++.
T Consensus       253 ~~-----~~~~~----------~~~~~~~~~----~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          253 EE-----IIRGQ----------VFFRQRVSS----ECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             HH-----HHHCC----------CCCSSCCCH----HHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             hh-----hhccc----------ccccccCCH----HHHHHHHHHccCChhhCcCHHHHhcC
Confidence            21     11100          001122333    48899999999999999999999863

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.5e-37  Score=324.76  Aligned_cols=243  Identities=21%  Similarity=0.332  Sum_probs=186.4

Q ss_pred             HHhhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch------hcHHHHHHHHHHHhcC----CCCCcceeeeee
Q 044236          437 EATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK------YSIQNLKVRLDFLSKL----QHPHLVSLLGHC  505 (747)
Q Consensus       437 ~~~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~E~~~l~~l----~H~nIv~l~g~~  505 (747)
                      ...++|.+.+.||+|+||.||+|+. .+++.||||+++....      .....+.+|+.++.++    +||||+++++++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~  107 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF  107 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence            3457899999999999999999984 5789999999974332      1223456789999888    899999999998


Q ss_pred             eccCCCCCCCCceEEEEEec-cCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec
Q 044236          506 IESGSQDDSNTNKVFLVYEY-IPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD  584 (747)
Q Consensus       506 ~~~~~~~~~~~~~~~lv~Ey-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  584 (747)
                      ...        ...++|||| +++++|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+||+++
T Consensus       108 ~~~--------~~~~~v~e~~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~  173 (312)
T 2iwi_A          108 ETQ--------EGFMLVLERPLPAQDLFDYITEK---GPLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILID  173 (312)
T ss_dssp             -------------CEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEE
T ss_pred             ecC--------CeEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEe
Confidence            763        367999999 7899999999763   358999999999999999999999   7999999999999999


Q ss_pred             -CCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCC
Q 044236          585 -EHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       585 -~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                       .++.+||+|||+++........              ...++..|++||.+....+ +.++|||||||++|||++|+.||
T Consensus       174 ~~~~~~kl~dfg~~~~~~~~~~~--------------~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf  239 (312)
T 2iwi_A          174 LRRGCAKLIDFGSGALLHDEPYT--------------DFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPF  239 (312)
T ss_dssp             TTTTEEEECCCSSCEECCSSCBC--------------CCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CCCCeEEEEEcchhhhcccCccc--------------ccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCC
Confidence             8899999999999765432111              1235667889998876665 45899999999999999999998


Q ss_pred             CCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....     .....          ......++    ..+.+++.+||+.||++|||+.|++++
T Consensus       240 ~~~~~-----~~~~~----------~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          240 ERDQE-----ILEAE----------LHFPAHVS----PDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             CSHHH-----HHHTC----------CCCCTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             CChHH-----Hhhhc----------cCCcccCC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            64321     11100          01112223    348899999999999999999999874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.1e-35  Score=345.30  Aligned_cols=289  Identities=26%  Similarity=0.361  Sum_probs=146.6

Q ss_pred             hhHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccCCccceEeCCCcEEEEecCCCCCCCC----CCCC-----------
Q 044236            3 TSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKE----NTAY-----------   67 (747)
Q Consensus         3 ~~~~~~l~~~k~~~~~~~~l~~w~~~~~~~c~~~~~~~~~v~c~~~~v~~l~l~~~~~~~~----~~~~-----------   67 (747)
                      ++|++||++||+++.||..+++|+.. +|||.|.     ||+|+.++|++|++.+..+...    ...+           
T Consensus        11 ~~~~~all~~k~~~~~~~~l~~W~~~-~~~C~w~-----gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A           11 YREIHQLISFKDVLPDKNLLPDWSSN-KNPCTFD-----GVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             HHHHHHHHHHHTTCSCTTSSTTCCTT-SCGGGST-----TEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCC-CCCcCCc-----ceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            57999999999999988789999754 7999987     6999988999999987654211    0000           


Q ss_pred             -------------CCCCCCCCCCCCccCCCcccc--cccCCCCCCEEEeeccCCCCCCChhc-cCCCCCCEEEcccCCCC
Q 044236           68 -------------NGHPIPNQTLSESFSIDSFVT--TLTRLTTLRVLSLVSLGIWGPLPDKI-HRLSSLELLDMSSNFLF  131 (747)
Q Consensus        68 -------------~~~~~~~~~l~~~~~~~~~~~--~l~~l~~L~~L~L~~n~i~~~~p~~~-~~L~~L~~L~Ls~N~l~  131 (747)
                                   ....+..++|+.+...+.+|.  .+++|++|++|+|++|.+.+.+|..+ .++++|++|||++|.++
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  164 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS  164 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence                         001222234444444444444  55555555555555555555544443 44555555555555554


Q ss_pred             CCCCcc---ccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCC-
Q 044236          132 GAIPSG---ISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-  207 (747)
Q Consensus       132 ~~~p~~---~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-  207 (747)
                      +..|..   +.++++|++|+|++|.+++..|  +..+++|++|++++|++++.+|. ++++++|+.|++++|.+++.+| 
T Consensus       165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             EETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred             CcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence            444433   3333333333333333222221  13334444444444444443333 4444444444444444444333 


Q ss_pred             CCCCCCcCCEEEccCCCCCCCCCCC-CCCcceeecCCCcCcccCchhhcCC-cccCeeecccCcCcccCCcccCCCCccc
Q 044236          208 DMSALTSLHVLDLRENKLDSGLPLM-PKGLVTVLLSRNLFSGAIPQQFGEL-AQLQHLDLSFNDLSGIPPSVLFSLPNIS  285 (747)
Q Consensus       208 ~~~~l~~L~~L~L~~N~l~~~~~~~-~~~L~~L~ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  285 (747)
                      .+..+++|++|+|++|.+.+.+|.. .++|++|++++|.++|.+|..+..+ ++|+.|+|++|++++.+|..|+.+++|+
T Consensus       242 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  321 (768)
T 3rgz_A          242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE  321 (768)
T ss_dssp             HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred             HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence            2344444444444444444333322 2344444444444444444444432 4444444444444444444444444444


Q ss_pred             eeecccccCccccCc
Q 044236          286 YLHLASNMLSGTLPK  300 (747)
Q Consensus       286 ~L~l~~N~l~g~ip~  300 (747)
                      +|++++|.++|.+|.
T Consensus       322 ~L~L~~n~l~~~ip~  336 (768)
T 3rgz_A          322 SLALSSNNFSGELPM  336 (768)
T ss_dssp             EEECCSSEEEEECCH
T ss_pred             EEECCCCcccCcCCH
Confidence            444444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.3e-35  Score=343.12  Aligned_cols=244  Identities=19%  Similarity=0.267  Sum_probs=188.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeC--CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~--~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|.+.+.||+|+||.||+|+..  +|+.||||++.... ......+.+|++++++++|||||+++++|...+.   ...
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~---~~~  156 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDR---HGD  156 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECT---TSC
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCC---CCC
Confidence            67999999999999999999964  68999999986432 3445678899999999999999999999987431   112


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...||||||+++++|.+++..     .++|..++.++.||++||.|||+   .+||||||||+|||++.+ .+||+|||+
T Consensus       157 ~~~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl~DFG~  227 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLIDLGA  227 (681)
T ss_dssp             EEEEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEECCCTT
T ss_pred             ceeEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEEEeccc
Confidence            236999999999999988753     58999999999999999999999   889999999999999986 899999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      ++......                ...++..|++||.+... ++.++|||||||++|||++|..|+......        
T Consensus       228 a~~~~~~~----------------~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~--------  282 (681)
T 2pzi_A          228 VSRINSFG----------------YLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVD--------  282 (681)
T ss_dssp             CEETTCCS----------------CCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECS--------
T ss_pred             chhcccCC----------------ccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccc--------
Confidence            97653220                12456788999987654 488999999999999999998776531100        


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-HHHHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-FEDVLWNLQYAA  731 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~evl~~L~~~~  731 (747)
                             .+...    .........+.+++.+||+.||.+||+ ++++...|....
T Consensus       283 -------~~~~~----~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          283 -------GLPED----DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             -------SCCTT----CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             -------ccccc----ccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence                   00000    001122345889999999999999995 666666776554

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.2e-35  Score=323.89  Aligned_cols=250  Identities=12%  Similarity=0.085  Sum_probs=180.1

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccch---hcHHHHHHHHHHHhcCCC-CCcceeeee---------
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK---YSIQNLKVRLDFLSKLQH-PHLVSLLGH---------  504 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~---~~~~~~~~E~~~l~~l~H-~nIv~l~g~---------  504 (747)
                      +.+|...+.||+|+||.||+|+ ..+|+.||||+++....   ...+.+.+|+.+++.++| +|......+         
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence            3456777899999999999999 56799999999874332   235778999999999987 433222211         


Q ss_pred             eeccCCC---------CCCCCceEEEEEeccCCCCccccccc----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 044236          505 CIESGSQ---------DDSNTNKVFLVYEYIPNGSYRAHLSE----NCPENVLKWSDRLAILIGVAKAVHFLHSSVISGS  571 (747)
Q Consensus       505 ~~~~~~~---------~~~~~~~~~lv~Ey~~~gsL~~~l~~----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i  571 (747)
                      +...+..         ........+++|+++ +|+|.++++.    ......++|..++.++.|+++||+|||+   .+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i  232 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL  232 (413)
T ss_dssp             EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCc
Confidence            1110000         000012467788876 5799988841    1123458899999999999999999999   899


Q ss_pred             ccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeee----------eccCCCc
Q 044236          572 FSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVV----------DIQRTKL  641 (747)
Q Consensus       572 vHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----------~~~~~s~  641 (747)
                      |||||||+|||++.++.+||+|||+++......               ...++ ..|+|||++          ....++.
T Consensus       233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~~---------------~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~  296 (413)
T 3dzo_A          233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASA---------------VSPIG-RGFAPPETTAERMLPFGQHHPTLMTF  296 (413)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTEEE---------------CCCCC-TTTCCHHHHHHHTSTTGGGCCEEECH
T ss_pred             ccCCcccceEEEecCCeEEEEeccceeecCCcc---------------ccCCC-CceeCchhhhccccccccccCcCCCc
Confidence            999999999999999999999999987654321               01234 678899988          5556889


Q ss_pred             CCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH
Q 044236          642 EDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE  721 (747)
Q Consensus       642 k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  721 (747)
                      ++|||||||++|||+||+.||........           ...++..  ...++    ..+.+++.+||+.||++|||+.
T Consensus       297 ~~DvwSlGvil~elltg~~Pf~~~~~~~~-----------~~~~~~~--~~~~~----~~~~~li~~~l~~dP~~Rpt~~  359 (413)
T 3dzo_A          297 AFDTWTLGLAIYWIWCADLPNTDDAALGG-----------SEWIFRS--CKNIP----QPVRALLEGFLRYPKEDRLLPL  359 (413)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCCTTGGGSC-----------SGGGGSS--CCCCC----HHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhhHHHHHHHHHHHHHCCCCCCCcchhhh-----------HHHHHhh--cccCC----HHHHHHHHHHccCChhhCcCHH
Confidence            99999999999999999999975432110           0011110  01233    3488999999999999999988


Q ss_pred             HHHH
Q 044236          722 DVLW  725 (747)
Q Consensus       722 evl~  725 (747)
                      |+++
T Consensus       360 ~~l~  363 (413)
T 3dzo_A          360 QAME  363 (413)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            8864

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=5.5e-35  Score=312.11  Aligned_cols=248  Identities=14%  Similarity=0.115  Sum_probs=181.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--------hhcHHHHHHHHHHHhcCC---------CCCccee
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--------KYSIQNLKVRLDFLSKLQ---------HPHLVSL  501 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~E~~~l~~l~---------H~nIv~l  501 (747)
                      .++|++.+.||+|+||+||+|+. +|+.||||+++...        ....+.+.+|+.++++++         |||||++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            35688899999999999999998 68999999997542        223477889999998886         5555555


Q ss_pred             eee-----------------eeccCC-----CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHH
Q 044236          502 LGH-----------------CIESGS-----QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA  559 (747)
Q Consensus       502 ~g~-----------------~~~~~~-----~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~g  559 (747)
                      .++                 +.....     ++.......++|||||++|++.+.+.+    ..+++..+..++.||+.|
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTAS  173 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHHH
Confidence            554                 332100     000113579999999999987776643    358999999999999999


Q ss_pred             HHHhh-cCCCCCcccCCCCCCceeecCCC--------------------cEEEecccccccccccchhcccCCCCCcccc
Q 044236          560 VHFLH-SSVISGSFSNRLTTNNILLDEHR--------------------IAKLSDYGISIIMEEHEKLEAKGEGPKARYG  618 (747)
Q Consensus       560 L~yLH-~~~~~~ivHrDlk~~NILld~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~  618 (747)
                      |+||| +   .+|+||||||+|||++.++                    .+||+|||+|+.....               
T Consensus       174 L~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~---------------  235 (336)
T 2vuw_A          174 LAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG---------------  235 (336)
T ss_dssp             HHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT---------------
T ss_pred             HHHHHHh---CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC---------------
Confidence            99999 8   7899999999999999887                    8999999999765421               


Q ss_pred             cceeeecCCcceeeeeeccCCCcCCceeehhHH-HHHHhhCCCCCCCCh--hhhHHHHHhccCcCCccccccccccCCCC
Q 044236          619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI-LLESLVGPIVTGKGE--AFLLNEMASFGSQDGRRRIVDPVVLTTCS  695 (747)
Q Consensus       619 ~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvv-l~Elltg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  695 (747)
                        ...++..|+|||++.+.. +.++||||+|++ .+++++|..|+....  ......+.......       ........
T Consensus       236 --~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  305 (336)
T 2vuw_A          236 --IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFK-------TKCNTPAM  305 (336)
T ss_dssp             --EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCS-------SCCCSHHH
T ss_pred             --cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccC-------cccchhhh
Confidence              135677899999987665 889999998777 788889988874211  01111111110000       00011123


Q ss_pred             HHHHHHHHHHHhHccCCCCCCCCCHHHHH
Q 044236          696 QESLSIVVSITNKCICPEPSSRPSFEDVL  724 (747)
Q Consensus       696 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  724 (747)
                      ...+..+.+++.+||+.|     |+.|++
T Consensus       306 ~~~s~~~~dli~~~L~~d-----sa~e~l  329 (336)
T 2vuw_A          306 KQIKRKIQEFHRTMLNFS-----SATDLL  329 (336)
T ss_dssp             HHHHHHHHHHHHHGGGSS-----SHHHHH
T ss_pred             hhcCHHHHHHHHHHhccC-----CHHHHH
Confidence            456777999999999976     888887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-32  Score=322.56  Aligned_cols=54  Identities=19%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHHhcCCCCCCCCCCCCCC----CCC--cccc----cCCc---cceEeC-CCcEEEEecCCCCC
Q 044236            3 TSQTQVLLQLRKHLEYPSPLDIWGNYE----GDL--CNLT----STAH---VSITCQ-DNSVTGLKIMGDKP   60 (747)
Q Consensus         3 ~~~~~~l~~~k~~~~~~~~l~~w~~~~----~~~--c~~~----~~~~---~~v~c~-~~~v~~l~l~~~~~   60 (747)
                      .+|++||++||+++.+|    +|+.++    .+|  |+|.    ...|   .||+|+ .++|++|+|.++.+
T Consensus       268 ~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L  335 (876)
T 4ecn_A          268 IKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA  335 (876)
T ss_dssp             HHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCC
T ss_pred             hHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCC
Confidence            46999999999999876    797653    467  9981    0112   589997 57999999988755

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-32  Score=316.61  Aligned_cols=271  Identities=20%  Similarity=0.293  Sum_probs=169.8

Q ss_pred             hHHHHHHHHHhcCCCCC---------CCCCCCCCCCCCcccccCCccceEeC-CCcEEEEecCCCCCCCCCCCCCCCCCC
Q 044236            4 SQTQVLLQLRKHLEYPS---------PLDIWGNYEGDLCNLTSTAHVSITCQ-DNSVTGLKIMGDKPVKENTAYNGHPIP   73 (747)
Q Consensus         4 ~~~~~l~~~k~~~~~~~---------~l~~w~~~~~~~c~~~~~~~~~v~c~-~~~v~~l~l~~~~~~~~~~~~~~~~~~   73 (747)
                      .|++||.+||.+++.+.         ...+|+.. .++|.|.  .+.||+|+ .++|++|+|.+..+.            
T Consensus        30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~--~~~GV~C~~~~~V~~L~L~~~~l~------------   94 (636)
T 4eco_A           30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWG--AQPGVSLNSNGRVTGLSLEGFGAS------------   94 (636)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTT--CCTTEEECTTCCEEEEECTTSCCE------------
T ss_pred             HHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCccccc--CCCCeEEcCCCCEEEEEecCcccC------------
Confidence            58999999999986542         23479765 7999993  23479995 479999999876541            


Q ss_pred             CCCCCCccCCCcccccccCCCCCCEEEeecc-------------------------------------------------
Q 044236           74 NQTLSESFSIDSFVTTLTRLTTLRVLSLVSL-------------------------------------------------  104 (747)
Q Consensus        74 ~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n-------------------------------------------------  104 (747)
                                +.+|..+++|++|++|+|++|                                                 
T Consensus        95 ----------g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~  164 (636)
T 4eco_A           95 ----------GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD  164 (636)
T ss_dssp             ----------EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             ----------CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence                      334455666666666666555                                                 


Q ss_pred             -----------------------------CCCCCCChhccCCCCCCEEEcccCCCCCC-----------------CCccc
Q 044236          105 -----------------------------GIWGPLPDKIHRLSSLELLDMSSNFLFGA-----------------IPSGI  138 (747)
Q Consensus       105 -----------------------------~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~-----------------~p~~~  138 (747)
                                                   +++| +|+.|++|++|++|+|++|.+++.                 +|..+
T Consensus       165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             HhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence                                         2223 566666666666666666666664                 66666


Q ss_pred             c--CCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCc-CCC-CCchhhcCC------ccCcEEecccCccccCCCC
Q 044236          139 S--RLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ-LKG-QFPSSICRI------ATLTDIAMSNNELSGKLPD  208 (747)
Q Consensus       139 ~--~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~-l~~-~~p~~~~~l------~~L~~L~l~~N~l~~~~p~  208 (747)
                      +  ++++|++|+|++|.+.+.+|..|+++++|+.|++++|+ ++| .+|..++++      ++|+.|++++|.++ .+|.
T Consensus       244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            6  66666666666666666666666666666666666665 665 566666554      66666666666666 3443


Q ss_pred             ---CCCCCcCCEEEccCCCCCCCCCCC--CCCcceeecCCCcCcccCchhhcCCcc-cCeeecccCcCcccCCcccCCCC
Q 044236          209 ---MSALTSLHVLDLRENKLDSGLPLM--PKGLVTVLLSRNLFSGAIPQQFGELAQ-LQHLDLSFNDLSGIPPSVLFSLP  282 (747)
Q Consensus       209 ---~~~l~~L~~L~L~~N~l~~~~~~~--~~~L~~L~ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~  282 (747)
                         ++.+++|+.|++++|+++|.+|..  .++|+.|++++|.++ .+|..|..+++ |+.|+|++|+++. +|..+..++
T Consensus       323 ~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~  400 (636)
T 4eco_A          323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKS  400 (636)
T ss_dssp             HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTC
T ss_pred             hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcc
Confidence               566666666666666666555521  245566666666666 55666666666 6666666666663 333444433


Q ss_pred             --ccceeecccccCccccCcCCC
Q 044236          283 --NISYLHLASNMLSGTLPKDLS  303 (747)
Q Consensus       283 --~L~~L~l~~N~l~g~ip~~~~  303 (747)
                        +|+.|++++|.++|.+|..+.
T Consensus       401 l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          401 VSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             SSCEEEEECCSSCTTTTTTCSSC
T ss_pred             cCccCEEECcCCcCCCcchhhhc
Confidence              566666666666666665554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.7e-32  Score=289.70  Aligned_cols=262  Identities=24%  Similarity=0.314  Sum_probs=222.1

Q ss_pred             hhHHHHHHHHHhcC-CCCC-CCCCCC---CCCCCCcccccCCccceEeCC----------CcEEEEecCCCCCCCCCCCC
Q 044236            3 TSQTQVLLQLRKHL-EYPS-PLDIWG---NYEGDLCNLTSTAHVSITCQD----------NSVTGLKIMGDKPVKENTAY   67 (747)
Q Consensus         3 ~~~~~~l~~~k~~~-~~~~-~l~~w~---~~~~~~c~~~~~~~~~v~c~~----------~~v~~l~l~~~~~~~~~~~~   67 (747)
                      .+|++||++||..+ .++. .+++|.   ...+++|.|.     |+.|..          .+|+.|++.++.+       
T Consensus        26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----g~~~~~~~~~l~~~~~~~l~~L~L~~n~l-------   93 (328)
T 4fcg_A           26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT-----GRALKATADLLEDATQPGRVALELRSVPL-------   93 (328)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSH-----HHHHHHHHHHHHHHTSTTCCEEEEESSCC-------
T ss_pred             chHHHHHHHHHHhccCCchhhhhhhcccccccccccccC-----CcchhhhHHHHhcccccceeEEEccCCCc-------
Confidence            57899999999988 3443 356783   3347899886     577742          4677777766433       


Q ss_pred             CCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEE
Q 044236           68 NGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTL  147 (747)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  147 (747)
                                      ..+|..+.++++|++|+|++|.+. .+|..|+++++|++|+|++|.++ .+|..|+++++|++|
T Consensus        94 ----------------~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           94 ----------------PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             ----------------SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ----------------hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence                            245567888999999999999997 89999999999999999999998 889999999999999


Q ss_pred             EcccCCCCCCCcccccC---------CCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEE
Q 044236          148 TMDTNFFDDNVPDWWDS---------LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVL  218 (747)
Q Consensus       148 ~L~~N~~~~~~p~~~~~---------l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L  218 (747)
                      +|++|.+.+.+|..+..         +++|+.|+|++|+++ .+|..++++++|+.|++++|.+++.++.+..+++|++|
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEE
Confidence            99999998989987765         999999999999998 78999999999999999999999877788899999999


Q ss_pred             EccCCCCCCCCCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          219 DLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       219 ~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      +|++|++.+.+|..   .++|+.|+|++|.+.+.+|..|..+++|+.|+|++|++.+.+|..++++++|+.+++..|.+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999998887764   467888889988888888888888888999999988888888888888888888888877654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.8e-31  Score=311.75  Aligned_cols=235  Identities=31%  Similarity=0.440  Sum_probs=157.6

Q ss_pred             CCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCC
Q 044236           75 QTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFF  154 (747)
Q Consensus        75 ~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~  154 (747)
                      ++++.+...+.+|..++++++|++|+|++|.+.+.+|..|+++++|+.|+|++|.+++.+|..|..+++|++|+|++|.+
T Consensus       399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  478 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL  478 (768)
T ss_dssp             EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence            44444444455666677777777777777777767777777777777777777777777777777777777777777777


Q ss_pred             CCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCC-
Q 044236          155 DDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLM-  232 (747)
Q Consensus       155 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~-  232 (747)
                      ++.+|..++++++|+.|+|++|++++.+|..++++++|+.|++++|.++|.+|. +..+++|+.|++++|+++|.+|.. 
T Consensus       479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            766677777777777777777777767777777777777777777777666663 566666777777766666554421 


Q ss_pred             ------------------------------------------------------------------------CCCcceee
Q 044236          233 ------------------------------------------------------------------------PKGLVTVL  240 (747)
Q Consensus       233 ------------------------------------------------------------------------~~~L~~L~  240 (747)
                                                                                              ...|+.|+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld  638 (768)
T 3rgz_A          559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD  638 (768)
T ss_dssp             GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred             hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence                                                                                    12355666


Q ss_pred             cCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCC
Q 044236          241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       241 ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      |++|.++|.+|..|+.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..+..++.|+
T Consensus       639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            777777777777777777777777777777766666666677777777777777777766665555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.2e-29  Score=267.55  Aligned_cols=226  Identities=27%  Similarity=0.402  Sum_probs=209.3

Q ss_pred             CCCCCCCCCC-ccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEE
Q 044236           70 HPIPNQTLSE-SFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT  148 (747)
Q Consensus        70 ~~~~~~~l~~-~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  148 (747)
                      ..+..++++. +...+.+|..++++++|++|+|++|.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            3456677774 666678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCcccccCCC-CCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCC
Q 044236          149 MDTNFFDDNVPDWWDSLS-NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLD  226 (747)
Q Consensus       149 L~~N~~~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~  226 (747)
                      |++|.+++.+|..+..++ +|+.|++++|++++.+|..+..++ |+.|++++|.+++.+|. +..+++|+.|+|++|+++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence            999999999999999998 999999999999999999999998 99999999999988875 789999999999999998


Q ss_pred             CCCCC--CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeeccccc-Cccc
Q 044236          227 SGLPL--MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM-LSGT  297 (747)
Q Consensus       227 ~~~~~--~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~-l~g~  297 (747)
                      +.+|.  ..++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|.. ..+++|+.|++++|+ ++|.
T Consensus       235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            77665  3578999999999999999999999999999999999999999886 899999999999998 6654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=2.4e-27  Score=263.88  Aligned_cols=261  Identities=19%  Similarity=0.215  Sum_probs=182.2

Q ss_pred             cEEEEecCCCCCCCC-CCCC-CCCCCCCCCCCCccCCCcc-cccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEc
Q 044236           49 SVTGLKIMGDKPVKE-NTAY-NGHPIPNQTLSESFSIDSF-VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDM  125 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~L  125 (747)
                      +++.|+++++..... ...+ ....+..++++.+...+.+ +..|.++++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            467777777654211 1111 1234455667766555455 456888888888888888888878888888888888888


Q ss_pred             ccCCCCCCCCcc--ccCCCCCCEEEcccCCCCCCCccc-ccCCCCCCEEEccCCcCCCCCchhhcCC-------------
Q 044236          126 SSNFLFGAIPSG--ISRLVRLQTLTMDTNFFDDNVPDW-WDSLSNLTVLSLKSNQLKGQFPSSICRI-------------  189 (747)
Q Consensus       126 s~N~l~~~~p~~--~~~l~~L~~L~L~~N~~~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l-------------  189 (747)
                      ++|.+++.+|..  |.++++|++|+|++|.+++..|.. +.++++|+.|++++|++++..|..+.++             
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence            888888766555  888888888888888888877765 7888888888888888887777666544             


Q ss_pred             ---------------------ccCcEEecccCccccCCCC--------------------------------------CC
Q 044236          190 ---------------------ATLTDIAMSNNELSGKLPD--------------------------------------MS  210 (747)
Q Consensus       190 ---------------------~~L~~L~l~~N~l~~~~p~--------------------------------------~~  210 (747)
                                           ++|+.|++++|.+++..|.                                      +.
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  270 (455)
T 3v47_A          191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK  270 (455)
T ss_dssp             BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred             cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence                                 4566677776665432210                                      00


Q ss_pred             --CCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccc
Q 044236          211 --ALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS  285 (747)
Q Consensus       211 --~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  285 (747)
                        ..++|+.|++++|.+.+..|..   .++|++|+|++|.+++..|..|..+++|+.|+|++|++++.+|..|..+++|+
T Consensus       271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence              1145666677766666555543   35677777777777777777777777777777777777777777777777777


Q ss_pred             eeecccccCccccCcCCCCCCCCC
Q 044236          286 YLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       286 ~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      .|+|++|++++..|..+..++.|+
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCC
T ss_pred             EEECCCCcccccChhhcccccccc
Confidence            777777777777676665554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.5e-27  Score=253.10  Aligned_cols=215  Identities=21%  Similarity=0.234  Sum_probs=197.0

Q ss_pred             CCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEE
Q 044236           92 RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL  171 (747)
Q Consensus        92 ~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L  171 (747)
                      ...+++.|+|++|++. .+|..+++|++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..++++++|+.|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            4578999999999996 78999999999999999999998 89999999999999999999999 689999999999999


Q ss_pred             EccCCcCCCCCchhhcC---------CccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC--CCCCcceee
Q 044236          172 SLKSNQLKGQFPSSICR---------IATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL--MPKGLVTVL  240 (747)
Q Consensus       172 ~l~~N~l~~~~p~~~~~---------l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~--~~~~L~~L~  240 (747)
                      +|++|++.+.+|..++.         +++|+.|++++|.++.....+..+++|++|+|++|++++..+.  ..++|++|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            99999999999988765         9999999999999994444689999999999999999864333  247899999


Q ss_pred             cCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCC
Q 044236          241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       241 ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      |++|++.+.+|..|+.+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++.|.+|..+..++.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            999999999999999999999999999999999999999999999999999999999999988776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=259.11  Aligned_cols=270  Identities=19%  Similarity=0.173  Sum_probs=204.4

Q ss_pred             EEEEecCCCCCCCCC-CCC-CCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEccc
Q 044236           50 VTGLKIMGDKPVKEN-TAY-NGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSS  127 (747)
Q Consensus        50 v~~l~l~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~  127 (747)
                      ++.|++.++.+.... ..+ ....+..++|+.+...+..|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  113 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE  113 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence            455666655442111 111 112344556666654444567788888888888888888766556678888888888888


Q ss_pred             CCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCC
Q 044236          128 NFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP  207 (747)
Q Consensus       128 N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  207 (747)
                      |.+.+..|..|.++++|++|+|++|.+.+..|..|.++++|+.|+|++|++++..+..|.++++|+.|++++|.+.+..+
T Consensus       114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            88888888888888888888888888888777788888888888888888887666778888888888888888887666


Q ss_pred             -CCCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCc
Q 044236          208 -DMSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN  283 (747)
Q Consensus       208 -~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  283 (747)
                       .+..+++|+.|++++|.+.+.+|..   ..+|+.|+|++|.+++..+..|..+++|+.|+|++|.++++++..|..+++
T Consensus       194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (477)
T 2id5_A          194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR  273 (477)
T ss_dssp             TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred             hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence             4778888888888888776655542   247889999999999766678899999999999999999999988999999


Q ss_pred             cceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          284 ISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       284 L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      |+.|+|++|++++..|..+..++.|+      .+.+++|.+.
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~N~l~  309 (477)
T 2id5_A          274 LQEIQLVGGQLAVVEPYAFRGLNYLR------VLNVSGNQLT  309 (477)
T ss_dssp             CCEEECCSSCCSEECTTTBTTCTTCC------EEECCSSCCS
T ss_pred             CCEEECCCCccceECHHHhcCcccCC------EEECCCCcCc
Confidence            99999999999988888776665554      3445555444

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.94  E-value=1.9e-28  Score=278.11  Aligned_cols=182  Identities=13%  Similarity=0.098  Sum_probs=125.9

Q ss_pred             cccCCCCeeEEEEE-eCCCcEEEEEEeecc----------chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCC
Q 044236          447 FMGEGSRGKLYKGR-LENGTYVAIRSLTFL----------KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       447 ~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~----------~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ..+.|++|.++.++ .-.|+.+|||++...          .....++|.+|+++|+++ .|+||+++++++.+.      
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~------  314 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENA------  314 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECS------
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEEC------
Confidence            35677777777765 456899999999642          123446799999999999 699999999999874      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...||||||++||+|.++|...   .+++..   +|+.||+.||+|+|+   .+||||||||+|||++.++.+||+||
T Consensus       315 --~~~yLVMEyv~G~~L~d~i~~~---~~l~~~---~I~~QIl~AL~ylH~---~GIIHRDIKPeNILL~~dg~vKL~DF  383 (569)
T 4azs_A          315 --QSGWLVMEKLPGRLLSDMLAAG---EEIDRE---KILGSLLRSLAALEK---QGFWHDDVRPWNVMVDARQHARLIDF  383 (569)
T ss_dssp             --SEEEEEEECCCSEEHHHHHHTT---CCCCHH---HHHHHHHHHHHHHHH---TTCEESCCCGGGEEECTTSCEEECCC
T ss_pred             --CEEEEEEecCCCCcHHHHHHhC---CCCCHH---HHHHHHHHHHHHHHH---CCceeccCchHhEEECCCCCEEEeec
Confidence              4899999999999999999863   346553   588999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG  658 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg  658 (747)
                      |+|+........            ....++++.|++||++.+ .+..++|+||+|++++++.++
T Consensus       384 GlAr~~~~~~~~------------~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~  434 (569)
T 4azs_A          384 GSIVTTPQDCSW------------PTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQP  434 (569)
T ss_dssp             TTEESCC---CC------------SHHHHHHHHHHHHHHC------------------CCCCTT
T ss_pred             ccCeeCCCCCcc------------ccCceechhhccHHHhCC-CCCCcccccccccchhhhccc
Confidence            999865432211            012467888999998864 567789999999999888765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=3.1e-26  Score=254.95  Aligned_cols=239  Identities=21%  Similarity=0.283  Sum_probs=206.8

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCC-ChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPL-PDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM  149 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  149 (747)
                      .+..++|+.+...+..|..+.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            4566778877665556888999999999999999998666 567999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCccc--ccCCCCCCEEEccCCcCCCCCchh-hcCCccCcEEecccCccccCCCC-CC---------------
Q 044236          150 DTNFFDDNVPDW--WDSLSNLTVLSLKSNQLKGQFPSS-ICRIATLTDIAMSNNELSGKLPD-MS---------------  210 (747)
Q Consensus       150 ~~N~~~~~~p~~--~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~-~~---------------  210 (747)
                      ++|.+++..|..  |+.+++|+.|+|++|++++..|.. +.++++|+.|++++|.+++..+. +.               
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence            999999866655  999999999999999999988876 89999999999999999987663 32               


Q ss_pred             -------------------CCCcCCEEEccCCCCCCCCCC----------------------------------------
Q 044236          211 -------------------ALTSLHVLDLRENKLDSGLPL----------------------------------------  231 (747)
Q Consensus       211 -------------------~l~~L~~L~L~~N~l~~~~~~----------------------------------------  231 (747)
                                         .+++|+.|++++|++.+..|.                                        
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  270 (455)
T 3v47_A          191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK  270 (455)
T ss_dssp             BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred             cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence                               336788888888877542110                                        


Q ss_pred             --CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCC
Q 044236          232 --MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       232 --~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                        ...+|+.|++++|.+++.+|..|+.+++|+.|+|++|++++.+|..|..+++|++|+|++|.+++..|..+..++.|+
T Consensus       271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence              014789999999999999999999999999999999999999999999999999999999999988788777666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=6.8e-26  Score=251.80  Aligned_cols=212  Identities=22%  Similarity=0.233  Sum_probs=148.3

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|++|+|++|+|.+..|..|.++++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|+.|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            46777777777777766777777777777777777777777777777777777777777777666666777777777777


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCC--CCCCCCcCCEEEccCCCCCCCCCCC--CCCcceeecCCCcCccc
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP--DMSALTSLHVLDLRENKLDSGLPLM--PKGLVTVLLSRNLFSGA  249 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~L~~L~L~~N~l~~~~~~~--~~~L~~L~ls~N~l~~~  249 (747)
                      ++|+++...+..|.++++|+.|++++|+..+.++  .+..+++|++|+|++|++++. |..  ..+|+.|+|++|.|++.
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCccc
Confidence            7777776556677777777777777744333333  266777777777777777643 322  35677777777777777


Q ss_pred             CchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCC
Q 044236          250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS  306 (747)
Q Consensus       250 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~  306 (747)
                      .|..|..+++|+.|+|++|+++++++..|..+++|+.|+|++|++++..+..+..++
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            777777777777777777777777777777777777777777777755444444333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.9e-26  Score=254.74  Aligned_cols=225  Identities=21%  Similarity=0.215  Sum_probs=201.7

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      .+..++|+.+...+..+..|.++++|++|+|++|.|.+..|..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            34556777766555557789999999999999999999888999999999999999999998888889999999999999


Q ss_pred             cCCCCCCCcccccCCCCCCEEEccCC-cCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCC
Q 044236          151 TNFFDDNVPDWWDSLSNLTVLSLKSN-QLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL  229 (747)
Q Consensus       151 ~N~~~~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~  229 (747)
                      +|.++...+..|.++++|+.|++++| .+....+..|.++++|+.|++++|++++ +|.+..+++|+.|+|++|++++..
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~  234 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIR  234 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEEC
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccC
Confidence            99999887889999999999999995 4544444579999999999999999985 578999999999999999998876


Q ss_pred             CCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCcc
Q 044236          230 PLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSG  296 (747)
Q Consensus       230 ~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g  296 (747)
                      |..   .++|+.|+|++|.+++..|..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++|++..
T Consensus       235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            643   4689999999999999999999999999999999999999999999999999999999998763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.5e-26  Score=251.60  Aligned_cols=220  Identities=20%  Similarity=0.230  Sum_probs=122.8

Q ss_pred             CCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCC
Q 044236           75 QTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFF  154 (747)
Q Consensus        75 ~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~  154 (747)
                      ++|+.+......+..|.++++|++|+|++|.|.+..|..|.++++|++|+|++|.++...+..|.++++|++|+|++|.+
T Consensus        69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred             EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence            34444333222334555666666666666666555555566666666666666666555555556666666666666666


Q ss_pred             CCCCcccccCCCCCCEEEccCCc-CCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC-
Q 044236          155 DDNVPDWWDSLSNLTVLSLKSNQ-LKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM-  232 (747)
Q Consensus       155 ~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~-  232 (747)
                      +...+..|..+++|+.|+|++|. +....+..|.++++|+.|++++|.++ .+|.+..+++|+.|+|++|++++..|.. 
T Consensus       149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  227 (440)
T 3zyj_A          149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSF  227 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred             cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhh
Confidence            55555555666666666665533 32222334555666666666666655 3445555566666666666555443332 


Q ss_pred             --CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          233 --PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       233 --~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                        .++|+.|+|++|.+++..+..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++|++.
T Consensus       228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence              244556666666666555555666666666666666666655555555666666666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1e-25  Score=249.38  Aligned_cols=225  Identities=22%  Similarity=0.207  Sum_probs=199.6

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|+.|+|++|+|.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.++...+..|..+++|+.|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            58999999999999988899999999999999999999999999999999999999999999888888999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCC--CCCCCCcCCEEEccCCCCCCCCCCC--CCCcceeecCCCcCccc
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP--DMSALTSLHVLDLRENKLDSGLPLM--PKGLVTVLLSRNLFSGA  249 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~L~~L~L~~N~l~~~~~~~--~~~L~~L~ls~N~l~~~  249 (747)
                      ++|+++...+..|.++++|+.|++++|+..+.++  .+..+++|++|+|++|+++. +|..  ..+|+.|+|++|.+++.
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCCCTTCSSCCEEECTTSCCCEE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccccCCCcccCEEECCCCccCcc
Confidence            9999998888899999999999999965544444  38899999999999999984 4433  47899999999999999


Q ss_pred             CchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       250 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      .|..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++|++++..+..+..++.|      ..+.+++|...
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------~~L~L~~Np~~  292 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL------ERIHLHHNPWN  292 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC------CEEECCSSCEE
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC------CEEEcCCCCcc
Confidence            99999999999999999999999999999999999999999999996666655555444      44566666544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-25  Score=233.32  Aligned_cols=207  Identities=24%  Similarity=0.245  Sum_probs=185.7

Q ss_pred             CCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCC-CCCCCcccccCCCCCCEE
Q 044236           93 LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF-FDDNVPDWWDSLSNLTVL  171 (747)
Q Consensus        93 l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-~~~~~p~~~~~l~~L~~L  171 (747)
                      .++|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|. +....|..|..+++|+.|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            3589999999999988777889999999999999999998889999999999999999997 777778899999999999


Q ss_pred             EccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCC---CCCCcceeecCCCcCc
Q 044236          172 SLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPL---MPKGLVTVLLSRNLFS  247 (747)
Q Consensus       172 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~---~~~~L~~L~ls~N~l~  247 (747)
                      ++++|++++..|..+.++++|+.|++++|.+++..+. +..+++|+.|+|++|++++..+.   ..++|+.|++++|.++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            9999999988889999999999999999999877765 78899999999999999865543   2468999999999999


Q ss_pred             ccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccC
Q 044236          248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP  299 (747)
Q Consensus       248 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip  299 (747)
                      +..|..|..+++|+.|+|++|++++.++..+..+++|+.|++++|++.+..+
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            9999999999999999999999999998889999999999999999875443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.3e-25  Score=258.42  Aligned_cols=219  Identities=19%  Similarity=0.180  Sum_probs=165.8

Q ss_pred             CCccccc-ccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCccc
Q 044236           83 IDSFVTT-LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDW  161 (747)
Q Consensus        83 ~~~~~~~-l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~  161 (747)
                      ++.+|.. +.++++|++|+|++|.|.+..|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..
T Consensus        63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  142 (597)
T 3oja_B           63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI  142 (597)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH
Confidence            4455543 678888999999988888877788888999999999999888888888888999999999999888766666


Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCc-------------------CCEEEccC
Q 044236          162 WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTS-------------------LHVLDLRE  222 (747)
Q Consensus       162 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~-------------------L~~L~L~~  222 (747)
                      |+++++|+.|+|++|.+++..|..|+++++|+.|++++|.+++..  +..+++                   |+.|++++
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~  220 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASH  220 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred             hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence            788889999999999888888888888889999999988887642  223333                   44455555


Q ss_pred             CCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCC
Q 044236          223 NKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL  302 (747)
Q Consensus       223 N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~  302 (747)
                      |.+....+..+.+|+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+++ +|..+
T Consensus       221 n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~  297 (597)
T 3oja_B          221 NSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG  297 (597)
T ss_dssp             SCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSS
T ss_pred             CcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccc
Confidence            55443333344567777888887776  3667778888888888888888877778888888888888888775 45444


Q ss_pred             CCCC
Q 044236          303 SCGS  306 (747)
Q Consensus       303 ~~~~  306 (747)
                      ..++
T Consensus       298 ~~l~  301 (597)
T 3oja_B          298 QPIP  301 (597)
T ss_dssp             SCCT
T ss_pred             ccCC
Confidence            3333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3e-26  Score=240.93  Aligned_cols=207  Identities=21%  Similarity=0.202  Sum_probs=97.9

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCC--CCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEE
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFG--AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      +|++|+|++|++....+..|.++++|++|+|++|.++.  ..|..+..+++|++|+|++|.+.. +|..+..+++|+.|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence            44455555555443222234455555555555554432  123444444555555555554442 344444555555555


Q ss_pred             ccCCcCCCCCc-hhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCC-CCCC---CCCCcceeecCCCcC
Q 044236          173 LKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDS-GLPL---MPKGLVTVLLSRNLF  246 (747)
Q Consensus       173 l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~-~~~~---~~~~L~~L~ls~N~l  246 (747)
                      +++|++++..+ ..+.++++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+ .+|.   ..++|++|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            55555543333 3444455555555555555444432 3444555555555554443 1222   123445555555555


Q ss_pred             cccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCC
Q 044236          247 SGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL  302 (747)
Q Consensus       247 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~  302 (747)
                      ++..|..|..+++|+.|+|++|++++.++..+..+++|+.|++++|++++.+|..+
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            54445555555555555555555555554445555555555555555554444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.5e-26  Score=267.80  Aligned_cols=236  Identities=19%  Similarity=0.279  Sum_probs=205.0

Q ss_pred             cccccc--CCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCC-CCC-CCCccccCC------CCCCEEEcccCCCC
Q 044236           86 FVTTLT--RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF-LFG-AIPSGISRL------VRLQTLTMDTNFFD  155 (747)
Q Consensus        86 ~~~~l~--~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~~~  155 (747)
                      +|..++  ++++|++|+|++|.+.|.+|+.|++|++|++|+|++|. ++| .+|..++++      ++|++|+|++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            999999  99999999999999999999999999999999999998 998 899999887      99999999999999


Q ss_pred             CCCcc--cccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCc-CCEEEccCCCCCCCCCCC
Q 044236          156 DNVPD--WWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTS-LHVLDLRENKLDSGLPLM  232 (747)
Q Consensus       156 ~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~-L~~L~L~~N~l~~~~~~~  232 (747)
                       .+|.  .++++++|+.|++++|+++|.+| .|+++++|+.|++++|.++...+.+..+++ |+.|++++|+++ .+|..
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~  395 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI  395 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence             7888  99999999999999999999999 999999999999999999954446889999 999999999998 66653


Q ss_pred             C-----CCcceeecCCCcCcccCchhhc-------CCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCc
Q 044236          233 P-----KGLVTVLLSRNLFSGAIPQQFG-------ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK  300 (747)
Q Consensus       233 ~-----~~L~~L~ls~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~  300 (747)
                      .     .+|+.|++++|.+++.+|..|.       .+++|+.|+|++|+++.+++..+..+++|+.|+|++|+++ .+|.
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~  474 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPK  474 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCS
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCH
Confidence            2     3799999999999999999998       8889999999999999888888888999999999999999 7776


Q ss_pred             CCCCCC--CCCCCCccceeeeccccCC
Q 044236          301 DLSCGS--KLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       301 ~~~~~~--~l~~~~~~~~~~~~~n~~~  325 (747)
                      ......  .+........+.+++|.+.
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred             HHhccccccccccCCccEEECcCCcCC
Confidence            543211  0111223445566666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.3e-26  Score=249.04  Aligned_cols=227  Identities=20%  Similarity=0.251  Sum_probs=154.2

Q ss_pred             CCCCCCCCccCCCcccc-cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           72 IPNQTLSESFSIDSFVT-TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      +..++++.+.. ..++. .+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        54 L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           54 VKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             CCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             CcEEECCCCcC-cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            44455555433 33433 67777888888888888777777777788888888888887776555557778888888888


Q ss_pred             cCCCCCCCc-ccccCCCCCCEEEccCC-cCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCC
Q 044236          151 TNFFDDNVP-DWWDSLSNLTVLSLKSN-QLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       151 ~N~~~~~~p-~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~  227 (747)
                      +|.+++..+ ..|..+++|+.|++++| .+.+..|..|.++++|+.|++++|.+++..| .+..+++|++|++++|.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            887775433 46777788888888777 4555556777777888888888887777655 46777777777777777643


Q ss_pred             CCCC---CCCCcceeecCCCcCccc-------------------------------CchhhcCCcccCeeecccCcCccc
Q 044236          228 GLPL---MPKGLVTVLLSRNLFSGA-------------------------------IPQQFGELAQLQHLDLSFNDLSGI  273 (747)
Q Consensus       228 ~~~~---~~~~L~~L~ls~N~l~~~-------------------------------~p~~~~~l~~L~~L~Ls~N~l~~~  273 (747)
                      ....   ..++|+.|++++|.+++.                               +|..|..+++|+.|+|++|+|+.+
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i  292 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV  292 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred             chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence            2111   135677777777777653                               345566666777777777777666


Q ss_pred             CCcccCCCCccceeecccccCccccC
Q 044236          274 PPSVLFSLPNISYLHLASNMLSGTLP  299 (747)
Q Consensus       274 ~~~~l~~l~~L~~L~l~~N~l~g~ip  299 (747)
                      ++..|..+++|++|++++|++.+..|
T Consensus       293 ~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          293 PDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            66556666777777777776665544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=7.2e-25  Score=233.03  Aligned_cols=225  Identities=22%  Similarity=0.216  Sum_probs=150.8

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  151 (747)
                      +..++++.+...+..+..+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.++ .+|..+.  ++|++|++++
T Consensus        54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~  130 (330)
T 1xku_A           54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE  130 (330)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCS
T ss_pred             CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCC
Confidence            334555554433333346777777777777777777766777777777777777777765 4555443  5777777777


Q ss_pred             CCCCCCCcccccCCCCCCEEEccCCcCCC--CCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCC
Q 044236          152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKG--QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL  229 (747)
Q Consensus       152 N~~~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~  229 (747)
                      |.+++..+..|.++++|+.|++++|.++.  ..+..+.++++|+.|++++|.++.....+.  ++|+.|++++|++++..
T Consensus       131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD  208 (330)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred             CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC
Confidence            77777666677777777777777777753  566677777777777777777765333332  67777777777776654


Q ss_pred             CC---CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCC
Q 044236          230 PL---MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL  302 (747)
Q Consensus       230 ~~---~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~  302 (747)
                      |.   ..++|+.|+|++|.+++..+..|..+++|+.|+|++|+++.++ ..+..+++|++|++++|++++..+..+
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC-hhhccCCCcCEEECCCCcCCccChhhc
Confidence            43   2356777777777777766667777777777777777777443 346677777777777777775444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=3.1e-25  Score=265.33  Aligned_cols=266  Identities=19%  Similarity=0.204  Sum_probs=193.9

Q ss_pred             eEeCCCcEEEEecCCCCCCCC-CCCC-CCCCCCCCCCCCccCCCcc-cccccCCCCCCEEEeeccCCCCCCChhccCCCC
Q 044236           43 ITCQDNSVTGLKIMGDKPVKE-NTAY-NGHPIPNQTLSESFSIDSF-VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSS  119 (747)
Q Consensus        43 v~c~~~~v~~l~l~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~  119 (747)
                      |.+-..+++.|+++++..... ...+ ....+..++|+.+.....+ |..|.+|++|++|+|++|.|.+..|+.|++|++
T Consensus        19 vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           19 VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             CCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            444335688888887655211 1111 1234556778887667777 678999999999999999999988999999999


Q ss_pred             CCEEEcccCCCCCCCCcc--ccCCCCCCEEEcccCCCCCCCc-ccccCCCCCCEEEccCCcCCCCCchhhcCC--ccCcE
Q 044236          120 LELLDMSSNFLFGAIPSG--ISRLVRLQTLTMDTNFFDDNVP-DWWDSLSNLTVLSLKSNQLKGQFPSSICRI--ATLTD  194 (747)
Q Consensus       120 L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~~~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l--~~L~~  194 (747)
                      |++|+|++|.+++.+|..  |.++++|++|+|++|.+++..+ ..|+++++|+.|+|++|.+++..|..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            999999999999877765  8999999999999999988655 579999999999999999998888888777  77888


Q ss_pred             EecccCccccCCCC-CCCCCc------CCEEEccCCCCCCCCCCC-----------------------------------
Q 044236          195 IAMSNNELSGKLPD-MSALTS------LHVLDLRENKLDSGLPLM-----------------------------------  232 (747)
Q Consensus       195 L~l~~N~l~~~~p~-~~~l~~------L~~L~L~~N~l~~~~~~~-----------------------------------  232 (747)
                      |++++|.+.+..|. +..+.+      |+.|++++|.+++..+..                                   
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            88888887776552 333333      777777777655432210                                   


Q ss_pred             ------CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCC
Q 044236          233 ------PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS  306 (747)
Q Consensus       233 ------~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~  306 (747)
                            ..+|+.|+|++|.+++..|..|..+++|+.|+|++|++++.+|..|..+++|++|+|++|.+++..|..+..++
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence                  13466667777777666666666677777777777777666666666666777777777766665565555444


Q ss_pred             CC
Q 044236          307 KL  308 (747)
Q Consensus       307 ~l  308 (747)
                      .|
T Consensus       339 ~L  340 (844)
T 3j0a_A          339 KV  340 (844)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=6.2e-25  Score=233.73  Aligned_cols=224  Identities=22%  Similarity=0.227  Sum_probs=150.4

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  151 (747)
                      +..++++.+...+..+..+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.++ .+|..+.  ++|++|+|++
T Consensus        56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~  132 (332)
T 2ft3_A           56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHD  132 (332)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCS
T ss_pred             CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCC
Confidence            344555555433333446777777777777777777766777777777777777777775 4554444  6777777777


Q ss_pred             CCCCCCCcccccCCCCCCEEEccCCcCC--CCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCC
Q 044236          152 NFFDDNVPDWWDSLSNLTVLSLKSNQLK--GQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL  229 (747)
Q Consensus       152 N~~~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~  229 (747)
                      |.+++..+..|..+++|+.|++++|.++  +..|..+..+ +|+.|++++|.+++....+.  ++|+.|++++|.+++..
T Consensus       133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCC
T ss_pred             CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccC
Confidence            7777666666777777777777777775  3566666666 77777777777776433332  56777777777776655


Q ss_pred             CCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCC
Q 044236          230 PLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDL  302 (747)
Q Consensus       230 ~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~  302 (747)
                      +..   .++|+.|+|++|.+++..+..|..+++|+.|+|++|+++.++ ..+..+++|+.|++++|++++..+..+
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-TTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-hhhhcCccCCEEECCCCCCCccChhHc
Confidence            432   356777777777777766667777777777777777777444 346677777777777777775444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=4.1e-25  Score=247.43  Aligned_cols=249  Identities=18%  Similarity=0.139  Sum_probs=217.8

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      .+..++|+.+...+..+..|.++++|++|+|++|.|.+..|..|+++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            45567777766555556789999999999999999999889999999999999999999988777789999999999999


Q ss_pred             cCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCC
Q 044236          151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGL  229 (747)
Q Consensus       151 ~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~  229 (747)
                      +|.+.+..|..|..+++|+.|+|++|.+++..|..|.++++|+.|++++|.+++..+. +..+++|+.|+|++|.+.+..
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            9999999999999999999999999999998899999999999999999999976654 789999999999999998755


Q ss_pred             CCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCC
Q 044236          230 PLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS  306 (747)
Q Consensus       230 ~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~  306 (747)
                      +..   ..+|+.|++++|.+.+.+|..+....+|+.|+|++|+++++++..|..+++|+.|+|++|.+++..+..+..++
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence            533   46799999999999988888877778999999999999999888899999999999999999977777776665


Q ss_pred             CCCCCCccceeeeccccCC
Q 044236          307 KLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       307 ~l~~~~~~~~~~~~~n~~~  325 (747)
                      .|+      .+.+++|.+.
T Consensus       273 ~L~------~L~L~~n~l~  285 (477)
T 2id5_A          273 RLQ------EIQLVGGQLA  285 (477)
T ss_dssp             TCC------EEECCSSCCS
T ss_pred             cCC------EEECCCCccc
Confidence            554      3445555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=1.4e-24  Score=230.75  Aligned_cols=223  Identities=21%  Similarity=0.283  Sum_probs=197.0

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|++|+|++|+|.+..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.++. +|..+.  ++|+.|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEEC
Confidence            579999999999998878899999999999999999999999999999999999999999985 565554  79999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCcccc--CCC-CCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSG--KLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI  250 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~  250 (747)
                      ++|++++..+..|.++++|+.|++++|.+..  ..+ .+..+++|+.|++++|.++......+++|++|++++|.+++..
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence            9999998888899999999999999999964  444 4788999999999999998644445688999999999999999


Q ss_pred             chhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCCC
Q 044236          251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSY  326 (747)
Q Consensus       251 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~~  326 (747)
                      |..|..+++|+.|+|++|.+++.++..+..+++|+.|++++|.++ .+|..+..++.|      ..+.+++|.++.
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L------~~L~l~~N~i~~  277 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI------QVVYLHNNNISA  277 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC------CEEECCSSCCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc------CEEECCCCcCCc
Confidence            999999999999999999999999989999999999999999998 788876655544      445666665553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=3.5e-25  Score=259.35  Aligned_cols=239  Identities=21%  Similarity=0.223  Sum_probs=189.0

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      .+..++|+.+...+..+..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|+++++|++|+|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            34455666554444444568888888888888888888888888888888888888888876666678888888888888


Q ss_pred             cCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC---CCCCCcCCEEEccCCCCCC
Q 044236          151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD---MSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       151 ~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~---~~~l~~L~~L~L~~N~l~~  227 (747)
                      +|.+++..|..|+++++|++|++++|.+++..|..++++++|+.|++++|.+++..+.   +..+++|+.|++++|.+++
T Consensus       106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             CCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            8888877777888888888888888888888888888888888888888888876663   2356788888888888876


Q ss_pred             CCCCC------------------------------CCCcceeecCCCcCcccCchhhcCCcc--cCeeecccCcCcccCC
Q 044236          228 GLPLM------------------------------PKGLVTVLLSRNLFSGAIPQQFGELAQ--LQHLDLSFNDLSGIPP  275 (747)
Q Consensus       228 ~~~~~------------------------------~~~L~~L~ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~  275 (747)
                      ..|..                              ..+|+.|++++|.+++..|.+|..++.  |+.|+|++|++++.+|
T Consensus       186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~  265 (680)
T 1ziw_A          186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN  265 (680)
T ss_dssp             BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred             cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc
Confidence            55531                              145788888888888888888888765  9999999999998888


Q ss_pred             cccCCCCccceeecccccCccccCcCCCCCCCCC
Q 044236          276 SVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       276 ~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      ..|..+++|++|++++|.+++..|..+..++.|+
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (680)
T 1ziw_A          266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR  299 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred             ccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence            8888899999999999999888887776665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.1e-24  Score=224.46  Aligned_cols=183  Identities=30%  Similarity=0.326  Sum_probs=155.9

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      .+|+.|+|++|++.+..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|.+++..+..|..+++|+.|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            47899999999998777778999999999999999998777777888999999999999998877778889999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCch
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ  252 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~  252 (747)
                      ++|++++..|..|.++++|+.|++++|.+++..+. +..+++|+.|+|++|+++                     +..+.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~  175 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK---------------------RVPEG  175 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---------------------CCCTT
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc---------------------EeChh
Confidence            99999988888888899999999999988876654 677788887777777654                     34456


Q ss_pred             hhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccc
Q 044236          253 QFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       253 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      .|..+++|+.|+|++|+|++.++..|..+++|+.|+|++|++.+.
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            688889999999999999999888888999999999999987644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.4e-25  Score=231.52  Aligned_cols=232  Identities=23%  Similarity=0.189  Sum_probs=199.4

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCC-CCCCCCccccCCCCCCEEEc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF-LFGAIPSGISRLVRLQTLTM  149 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L  149 (747)
                      .+..++++.+...+..+..+.++++|++|+|++|.+.+..|..|.++++|++|+|++|. +....|..|..+++|++|+|
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            34556666654433334679999999999999999999889999999999999999997 77777899999999999999


Q ss_pred             ccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCC
Q 044236          150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSG  228 (747)
Q Consensus       150 ~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~  228 (747)
                      ++|.+++..|..|..+++|+.|++++|++++..+..|.++++|+.|++++|.+++..+. +..+++|+.|+|++|.+++.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            99999998899999999999999999999987778899999999999999999987774 88999999999999999887


Q ss_pred             CCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCC
Q 044236          229 LPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS  303 (747)
Q Consensus       229 ~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~  303 (747)
                      .|..   .++|+.|++++|.+++..+..|..+++|+.|+|++|.+....+.. .-...++.+....|.+.+..|..+.
T Consensus       193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence            6654   468999999999999988888999999999999999998755432 1223456667788888888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=2.7e-25  Score=256.64  Aligned_cols=270  Identities=21%  Similarity=0.214  Sum_probs=225.9

Q ss_pred             cEEEEecCCCCCCCCCCC-CC-CCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcc
Q 044236           49 SVTGLKIMGDKPVKENTA-YN-GHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMS  126 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls  126 (747)
                      .++.+++.++........ +. ...+..++++.+ .+..+|..+.++++|++|+|++|.+.+..|..++++++|++|+|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            688888887655211111 11 134555677766 455889999999999999999999998889999999999999999


Q ss_pred             cCCCCCCCCcc-ccCCCCCCEEEcccCCCCCCC--cccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccc
Q 044236          127 SNFLFGAIPSG-ISRLVRLQTLTMDTNFFDDNV--PDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS  203 (747)
Q Consensus       127 ~N~l~~~~p~~-~~~l~~L~~L~L~~N~~~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  203 (747)
                      +|.+.+.+|.. +.++++|++|+|++|.+++..  |..+..+++|+.|++++|++++..|..|.++++|+.|++++|.++
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            99998777765 899999999999999998866  778999999999999999999989999999999999999999999


Q ss_pred             cCCCC--CCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcCccc---CchhhcCCcccCeeecccCcCcccCC
Q 044236          204 GKLPD--MSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGA---IPQQFGELAQLQHLDLSFNDLSGIPP  275 (747)
Q Consensus       204 ~~~p~--~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~  275 (747)
                      +..+.  +..+++|+.|++++|.+++..|..   .++|++|++++|.+++.   .+..|..+++|+.|+|++|++++.+|
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence            87653  789999999999999998876653   47899999999999873   33678999999999999999999999


Q ss_pred             cccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCCC
Q 044236          276 SVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSY  326 (747)
Q Consensus       276 ~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~~  326 (747)
                      ..|..+++|+.|+|++|++++.+|..+..++.|       .+.+++|.++.
T Consensus       494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-------~L~L~~N~l~~  537 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-------YLNLASNHISI  537 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-------EEECCSSCCCC
T ss_pred             hhhccccCCCEEECCCCccCcCChhHhCccccc-------EEECcCCcccc
Confidence            999999999999999999999988887665544       34455555553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=1.2e-24  Score=251.19  Aligned_cols=233  Identities=21%  Similarity=0.202  Sum_probs=142.7

Q ss_pred             CCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCC
Q 044236           75 QTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFF  154 (747)
Q Consensus        75 ~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~  154 (747)
                      ++++.+...+..+..+.++++|++|+|++|.+. .+|+.++++++|++|+|++|.+.+..|..+.++++|++|+|++|.+
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            344444333333344666666666666666664 4666666666666666666666666666666666666666666666


Q ss_pred             CCCCcc-cccCCCCCCEEEccCCcCCCCC--chhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCC
Q 044236          155 DDNVPD-WWDSLSNLTVLSLKSNQLKGQF--PSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLP  230 (747)
Q Consensus       155 ~~~~p~-~~~~l~~L~~L~l~~N~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~  230 (747)
                      .+.+|. .+..+++|+.|++++|.+++..  |..+.++++|+.|++++|.+++..| .+..+++|+.|++++|++.+..+
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence            654443 3666666666666666666544  5566666666666666666666555 35566666666666666655443


Q ss_pred             C----CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCccc---CCcccCCCCccceeecccccCccccCcCCC
Q 044236          231 L----MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGI---PPSVLFSLPNISYLHLASNMLSGTLPKDLS  303 (747)
Q Consensus       231 ~----~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~  303 (747)
                      .    ..++|+.|++++|.+++..|..|..+++|+.|+|++|++++.   .+..+..+++|+.|++++|.+++..|..+.
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  497 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT  497 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc
Confidence            2    134566666666666666666666666666666666666652   224456666666666666666666665555


Q ss_pred             CCCCC
Q 044236          304 CGSKL  308 (747)
Q Consensus       304 ~~~~l  308 (747)
                      .++.|
T Consensus       498 ~l~~L  502 (606)
T 3t6q_A          498 SLKMM  502 (606)
T ss_dssp             TCTTC
T ss_pred             cccCC
Confidence            44443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=6.5e-25  Score=230.76  Aligned_cols=244  Identities=24%  Similarity=0.286  Sum_probs=206.9

Q ss_pred             ceEeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccc-cccCCCCCCEEEeeccCCCC--CCChhccCCC
Q 044236           42 SITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVT-TLTRLTTLRVLSLVSLGIWG--PLPDKIHRLS  118 (747)
Q Consensus        42 ~v~c~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n~i~~--~~p~~~~~L~  118 (747)
                      +|.|....++.+...          + ...+..++++.+. +..+|. .+.++++|++|+|++|.+..  ..|..+..++
T Consensus        11 ~l~c~~~~l~~ip~~----------~-~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~   78 (306)
T 2z66_A           11 EIRCNSKGLTSVPTG----------I-PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT   78 (306)
T ss_dssp             EEECCSSCCSSCCSC----------C-CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred             EEEcCCCCcccCCCC----------C-CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence            689976555433211          1 1245556777654 345665 47999999999999999973  3477888999


Q ss_pred             CCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCc-ccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEec
Q 044236          119 SLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVP-DWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAM  197 (747)
Q Consensus       119 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l  197 (747)
                      +|++|+|++|.+. .+|..+..+++|++|+|++|.+++..+ ..+..+++|+.|++++|.+++..|..+.++++|+.|++
T Consensus        79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            9999999999986 577789999999999999999988665 68999999999999999999999999999999999999


Q ss_pred             ccCcccc-CCC-CCCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcc
Q 044236          198 SNNELSG-KLP-DMSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG  272 (747)
Q Consensus       198 ~~N~l~~-~~p-~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  272 (747)
                      ++|.+++ .+| .+..+++|+.|+|++|++++..|..   .++|++|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            9999987 344 5889999999999999998876643   4689999999999999888899999999999999999999


Q ss_pred             cCCcccCCCC-ccceeecccccCcccc
Q 044236          273 IPPSVLFSLP-NISYLHLASNMLSGTL  298 (747)
Q Consensus       273 ~~~~~l~~l~-~L~~L~l~~N~l~g~i  298 (747)
                      .+|..+..++ +|++|+|++|++++..
T Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          238 SKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             cCHHHHHhhhccCCEEEccCCCeeccc
Confidence            9999999985 9999999999998653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=4.5e-25  Score=260.19  Aligned_cols=206  Identities=21%  Similarity=0.282  Sum_probs=93.7

Q ss_pred             cccccc--CCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCC-CCC-CCCccccCCC-------CCCEEEcccCCC
Q 044236           86 FVTTLT--RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF-LFG-AIPSGISRLV-------RLQTLTMDTNFF  154 (747)
Q Consensus        86 ~~~~l~--~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~~  154 (747)
                      +|..++  +|++|++|+|++|.+.+.+|..|++|++|+.|+|++|. ++| .+|..|++++       +|++|+|++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            444444  55555555555555555555555555555555555554 444 4444443333       555555555555


Q ss_pred             CCCCcc--cccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCc-CCEEEccCCCCCCCCCC
Q 044236          155 DDNVPD--WWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTS-LHVLDLRENKLDSGLPL  231 (747)
Q Consensus       155 ~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~-L~~L~L~~N~l~~~~~~  231 (747)
                      + .+|.  .|+++++|+.|+|++|+++ .+| .|+++++|+.|++++|.++...+.+..+++ |+.|+|++|+++ .+|.
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCch
Confidence            4 3444  4555555555555555554 444 444555555555555555422223444444 555555555444 3332


Q ss_pred             CC-----CCcceeecCCCcCcccCchhh---c--CCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          232 MP-----KGLVTVLLSRNLFSGAIPQQF---G--ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       232 ~~-----~~L~~L~ls~N~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      ..     .+|+.|+|++|.++|.+|...   .  .+++|+.|+|++|+|+.+++..+..+++|+.|+|++|+++
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence            21     124444444444444333211   1  1224444444444444433333334444444444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=2.5e-24  Score=248.63  Aligned_cols=153  Identities=20%  Similarity=0.205  Sum_probs=104.1

Q ss_pred             CCCcccccCCccceEeCC-----------CcEEEEecCCCCCCCCCC-CC-CCCCCCCCCCCCccCCCcccccccCCCCC
Q 044236           30 GDLCNLTSTAHVSITCQD-----------NSVTGLKIMGDKPVKENT-AY-NGHPIPNQTLSESFSIDSFVTTLTRLTTL   96 (747)
Q Consensus        30 ~~~c~~~~~~~~~v~c~~-----------~~v~~l~l~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~l~~l~~L   96 (747)
                      .+||.+.. ....+.|.+           .+++.|+++++....... .+ ....+..++++.+...+..|..|.++++|
T Consensus         4 ~~~c~~~~-~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L   82 (606)
T 3vq2_A            4 LNPCIEVV-PNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL   82 (606)
T ss_dssp             --CCEEEE-TTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCCceecC-CCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhc
Confidence            35676632 223577753           246778887765521111 11 12345556677665444446678888888


Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCC-CCcccccCCCCCCEEEccC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDD-NVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~-~~p~~~~~l~~L~~L~l~~  175 (747)
                      ++|+|++|.+.+..|..|++|++|++|+|++|.+++..|..|+++++|++|+|++|.+.+ .+|..|+++++|+.|++++
T Consensus        83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            888888888887778888888888888888888877777778888888888888888775 5677888888888888887


Q ss_pred             CcCCCCCc
Q 044236          176 NQLKGQFP  183 (747)
Q Consensus       176 N~l~~~~p  183 (747)
                      |++++..|
T Consensus       163 n~l~~~~~  170 (606)
T 3vq2_A          163 NYIQTITV  170 (606)
T ss_dssp             SCCCEECT
T ss_pred             CcceecCh
Confidence            77765443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=1.5e-24  Score=236.13  Aligned_cols=223  Identities=20%  Similarity=0.198  Sum_probs=168.8

Q ss_pred             CCCCCCccCCCccccc-ccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccC
Q 044236           74 NQTLSESFSIDSFVTT-LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN  152 (747)
Q Consensus        74 ~~~l~~~~~~~~~~~~-l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  152 (747)
                      .++++.+ .+..+|.. +.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus        49 ~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  127 (390)
T 3o6n_A           49 IVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN  127 (390)
T ss_dssp             EEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence            3444433 34556654 688899999999999998877778999999999999999998888888899999999999999


Q ss_pred             CCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcC-----------------
Q 044236          153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSL-----------------  215 (747)
Q Consensus       153 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L-----------------  215 (747)
                      .++...+..|+.+++|+.|++++|.+++..|..|.++++|+.|++++|.+++..  +..+++|                 
T Consensus       128 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~  205 (390)
T 3o6n_A          128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI  205 (390)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCS
T ss_pred             ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCC
Confidence            988765566788999999999999998888888889999999999999887642  3334444                 


Q ss_pred             --CEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeeccccc
Q 044236          216 --HVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM  293 (747)
Q Consensus       216 --~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~  293 (747)
                        +.|++++|.+.......+.+|+.|++++|.+++.  ..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|+
T Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (390)
T 3o6n_A          206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR  283 (390)
T ss_dssp             SCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred             cceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence              4455555544433223345677788888877753  567778888888888888888877778888888888888888


Q ss_pred             CccccCcCC
Q 044236          294 LSGTLPKDL  302 (747)
Q Consensus       294 l~g~ip~~~  302 (747)
                      +++ +|..+
T Consensus       284 l~~-~~~~~  291 (390)
T 3o6n_A          284 LVA-LNLYG  291 (390)
T ss_dssp             CCE-EECSS
T ss_pred             Ccc-cCccc
Confidence            774 44443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=1.7e-24  Score=230.39  Aligned_cols=221  Identities=24%  Similarity=0.275  Sum_probs=194.7

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++. +|..+.  ++|+.|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEEC
Confidence            589999999999988888899999999999999999999999999999999999999999985 565554  89999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCcccc--CCC-CCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSG--KLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI  250 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~  250 (747)
                      ++|++++..+..|.++++|+.|++++|.++.  ..+ .+..+ +|+.|++++|++++.....+++|++|++++|.+++..
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence            9999998777889999999999999999963  445 36666 9999999999998744445678999999999999988


Q ss_pred             chhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       251 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      |..|..+++|+.|+|++|++++.++..+..+++|+.|++++|+++ .+|..+..++.|+      .+.+++|.+.
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~------~L~l~~N~l~  277 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ------VVYLHTNNIT  277 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCC------EEECCSSCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCC------EEECCCCCCC
Confidence            899999999999999999999999999999999999999999998 8888776555544      4556666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=6.1e-25  Score=227.35  Aligned_cols=205  Identities=23%  Similarity=0.239  Sum_probs=176.8

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|++|+|++|++.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|+.|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            47899999999998877778999999999999999998888888999999999999999999888888999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccC-CC-CCCCCCcCCEEEccCCCCCCCCCCCC---CCcc----eeecCCC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGK-LP-DMSALTSLHVLDLRENKLDSGLPLMP---KGLV----TVLLSRN  244 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p-~~~~l~~L~~L~L~~N~l~~~~~~~~---~~L~----~L~ls~N  244 (747)
                      ++|++++..+..+.++++|+.|++++|.+++. +| .+..+++|+.|+|++|++++..+...   ..|.    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99999987777899999999999999999873 45 57889999999999999887554332   2343    8999999


Q ss_pred             cCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccC
Q 044236          245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP  299 (747)
Q Consensus       245 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip  299 (747)
                      .+++..+..+.. .+|+.|+|++|++++.++..|..+++|+.|++++|++.+..|
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            999776666654 489999999999999999989999999999999999987654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.4e-25  Score=236.36  Aligned_cols=216  Identities=23%  Similarity=0.275  Sum_probs=172.3

Q ss_pred             CCCCCccC-CCccccccc-------CCCCCCEEEeeccCCCCCCChhc--cCCCCCCEEEcccCCCCCCCCccccCC---
Q 044236           75 QTLSESFS-IDSFVTTLT-------RLTTLRVLSLVSLGIWGPLPDKI--HRLSSLELLDMSSNFLFGAIPSGISRL---  141 (747)
Q Consensus        75 ~~l~~~~~-~~~~~~~l~-------~l~~L~~L~L~~n~i~~~~p~~~--~~L~~L~~L~Ls~N~l~~~~p~~~~~l---  141 (747)
                      ++|+.+.. ...++..+.       ++++|++|+|++|.+.+.+|..+  +.+++|++|+|++|.+++. |..++.+   
T Consensus        68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~  146 (312)
T 1wwl_A           68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW  146 (312)
T ss_dssp             CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT
T ss_pred             cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh
Confidence            45555433 234555554       78899999999999988888876  8899999999999998877 8878777   


Q ss_pred             --CCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCC--Cchhh--cCCccCcEEecccCccccC--CC-C-CCC
Q 044236          142 --VRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQ--FPSSI--CRIATLTDIAMSNNELSGK--LP-D-MSA  211 (747)
Q Consensus       142 --~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~--~~l~~L~~L~l~~N~l~~~--~p-~-~~~  211 (747)
                        ++|++|+|++|.+++..|..|+.+++|+.|+|++|++.+.  +|..+  .++++|+.|++++|.+++.  ++ . +..
T Consensus       147 ~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA  226 (312)
T ss_dssp             CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred             hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence              8899999999999888888899999999999999988765  34444  7889999999999988742  22 2 356


Q ss_pred             CCcCCEEEccCCCCCCCCCC----CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCcccee
Q 044236          212 LTSLHVLDLRENKLDSGLPL----MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL  287 (747)
Q Consensus       212 l~~L~~L~L~~N~l~~~~~~----~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  287 (747)
                      +++|+.|+|++|++++..|.    ..++|+.|+|++|.|+ .+|..+.  ++|+.|+|++|+|++. |. +..+++|++|
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L  301 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNL  301 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEE
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEE
Confidence            78899999999999886642    2468899999999998 6777766  7899999999999888 44 7889999999


Q ss_pred             ecccccCcc
Q 044236          288 HLASNMLSG  296 (747)
Q Consensus       288 ~l~~N~l~g  296 (747)
                      ++++|++++
T Consensus       302 ~L~~N~l~~  310 (312)
T 1wwl_A          302 SLKGNPFLD  310 (312)
T ss_dssp             ECTTCTTTC
T ss_pred             eccCCCCCC
Confidence            999998875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=2.9e-24  Score=243.23  Aligned_cols=248  Identities=17%  Similarity=0.161  Sum_probs=156.2

Q ss_pred             CcEEEEecCCCCCCCCC-CCC-CCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEc
Q 044236           48 NSVTGLKIMGDKPVKEN-TAY-NGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDM  125 (747)
Q Consensus        48 ~~v~~l~l~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~L  125 (747)
                      .+++.|+++++...... ..+ ....+..++|+.|...+..|..|+++++|++|+|++|.|. .+|..  .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            35666777665442111 001 1123445566666554445667777777777777777775 45655  6777777777


Q ss_pred             ccCCCCC-CCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC--CEEEccCCcC--CCCCchhhcCCc----------
Q 044236          126 SSNFLFG-AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL--TVLSLKSNQL--KGQFPSSICRIA----------  190 (747)
Q Consensus       126 s~N~l~~-~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L--~~L~l~~N~l--~~~~p~~~~~l~----------  190 (747)
                      ++|.+++ .+|..|+++++|++|+|++|.+++   ..+..+++|  +.|++++|.+  .+..|..+..+.          
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            7777766 467777777777777777777765   345555555  6677776666  555565555532          


Q ss_pred             -------------------------------------------------------------------------cCcEEec
Q 044236          191 -------------------------------------------------------------------------TLTDIAM  197 (747)
Q Consensus       191 -------------------------------------------------------------------------~L~~L~l  197 (747)
                                                                                               +|+.|++
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l  254 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI  254 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred             CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence                                                                                     5666777


Q ss_pred             ccCccccCCCC-C-----CCCCcCCEEEccCCCC--------------------------CCCC-CCCCCCcceeecCCC
Q 044236          198 SNNELSGKLPD-M-----SALTSLHVLDLRENKL--------------------------DSGL-PLMPKGLVTVLLSRN  244 (747)
Q Consensus       198 ~~N~l~~~~p~-~-----~~l~~L~~L~L~~N~l--------------------------~~~~-~~~~~~L~~L~ls~N  244 (747)
                      ++|.++|.+|. +     ..+++|+.+++++|.+                          .... +...++|++|++++|
T Consensus       255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n  334 (520)
T 2z7x_B          255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN  334 (520)
T ss_dssp             EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred             ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence            77777766653 3     4444444444444433                          2211 133456777777777


Q ss_pred             cCcccCchhhcCCcccCeeecccCcCcc--cCCcccCCCCccceeecccccCccccCcC
Q 044236          245 LFSGAIPQQFGELAQLQHLDLSFNDLSG--IPPSVLFSLPNISYLHLASNMLSGTLPKD  301 (747)
Q Consensus       245 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~l~g~ip~~  301 (747)
                      .+++.+|..|+.+++|+.|+|++|++++  ..|..+..+++|++|++++|.+++.+|..
T Consensus       335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence            7777777777777777777777777776  33456777777777777777777666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=2.5e-24  Score=257.58  Aligned_cols=240  Identities=22%  Similarity=0.245  Sum_probs=208.1

Q ss_pred             CCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCC-ChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEE
Q 044236           70 HPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPL-PDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT  148 (747)
Q Consensus        70 ~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  148 (747)
                      ..+..++|+.|...+..+..|.++++|++|+|++|.+.+.+ |..|++|++|++|+|++|.+.+..|..|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            34566788877665666789999999999999999776776 78899999999999999999999999999999999999


Q ss_pred             cccCCCCCCCccc--ccCCCCCCEEEccCCcCCCCCc-hhhcCCccCcEEecccCccccCCCC-CCCC--CcCCEEEccC
Q 044236          149 MDTNFFDDNVPDW--WDSLSNLTVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLPD-MSAL--TSLHVLDLRE  222 (747)
Q Consensus       149 L~~N~~~~~~p~~--~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l--~~L~~L~L~~  222 (747)
                      |++|.+++.+|..  |+++++|+.|+|++|.+++..| ..|+++++|+.|++++|.+++..+. +..+  ++|+.|+|++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            9999999877665  9999999999999999998765 6899999999999999999987774 6666  8999999999


Q ss_pred             CCCCCCCCCCC---------CCcceeecCCCcCcccCchhhcC-------------------------------------
Q 044236          223 NKLDSGLPLMP---------KGLVTVLLSRNLFSGAIPQQFGE-------------------------------------  256 (747)
Q Consensus       223 N~l~~~~~~~~---------~~L~~L~ls~N~l~~~~p~~~~~-------------------------------------  256 (747)
                      |.+.+..|...         ..|+.|++++|.+++.+|..+..                                     
T Consensus       184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l  263 (844)
T 3j0a_A          184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL  263 (844)
T ss_dssp             SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred             CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence            99988766431         13899999999988777665542                                     


Q ss_pred             -CcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCC
Q 044236          257 -LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       257 -l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                       .++|+.|+|++|.+.+.++..|..+++|+.|+|++|.+++..|..+..++.|+
T Consensus       264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  317 (844)
T 3j0a_A          264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ  317 (844)
T ss_dssp             TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred             ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence             26899999999999999999999999999999999999998888887666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=9.5e-24  Score=241.28  Aligned_cols=107  Identities=26%  Similarity=0.242  Sum_probs=77.6

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      .+..++++.|...+..+..|.++++|++|+|++|.|.+..|+.|+++++|++|||++|.++ .+|..  .+++|++|+|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            3445666666554444567888888888888888887777777888888888888888876 45554  67788888888


Q ss_pred             cCCCCC-CCcccccCCCCCCEEEccCCcCCC
Q 044236          151 TNFFDD-NVPDWWDSLSNLTVLSLKSNQLKG  180 (747)
Q Consensus       151 ~N~~~~-~~p~~~~~l~~L~~L~l~~N~l~~  180 (747)
                      +|.+++ .+|..|+++++|+.|++++|++++
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCccccCchHhhcccCcccEEecCCCcccc
Confidence            887776 345777777777777777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=7e-24  Score=245.94  Aligned_cols=159  Identities=20%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             CCCCCCCCC---CCCcccccCCccceEeCCC-----------cEEEEecCCCCCCCCC-CCCC-CCCCCCCCCCCccCCC
Q 044236           21 PLDIWGNYE---GDLCNLTSTAHVSITCQDN-----------SVTGLKIMGDKPVKEN-TAYN-GHPIPNQTLSESFSID   84 (747)
Q Consensus        21 ~l~~w~~~~---~~~c~~~~~~~~~v~c~~~-----------~v~~l~l~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~   84 (747)
                      .++.|+.+.   .++|.+.. ....+.|...           .++.|+|+++.+.... ..+. ...+..++|+.|. +.
T Consensus        12 ~~~~~~~~~p~~~~~c~~~~-~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~   89 (635)
T 4g8a_A           12 KLAAANSSIPESWEPCVEVV-PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQ   89 (635)
T ss_dssp             -------------CCSEEEE-TTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred             hhhcccCCCCCCCCCccccC-CCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CC
Confidence            455554321   24565542 1234778532           3555666555442111 1111 1233344555443 22


Q ss_pred             cc-cccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCC-CCcccc
Q 044236           85 SF-VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDD-NVPDWW  162 (747)
Q Consensus        85 ~~-~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~-~~p~~~  162 (747)
                      .+ +.+|.+|++|++|+|++|+|.+..|..|.+|++|++|+|++|.+++..+..|+++++|++|+|++|.+++ .+|..+
T Consensus        90 ~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~  169 (635)
T 4g8a_A           90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  169 (635)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh
Confidence            33 2345666666666666666655555556666666666666666665555556666666666666666654 345556


Q ss_pred             cCCCCCCEEEccCCcCCCC
Q 044236          163 DSLSNLTVLSLKSNQLKGQ  181 (747)
Q Consensus       163 ~~l~~L~~L~l~~N~l~~~  181 (747)
                      +.+++|+.|++++|++++.
T Consensus       170 ~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          170 SNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             GGCTTCCEEECCSSCCCEE
T ss_pred             ccchhhhhhcccCcccccc
Confidence            6666666666666655543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.5e-24  Score=246.42  Aligned_cols=242  Identities=22%  Similarity=0.185  Sum_probs=189.9

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      .+..++|+.+...+..+..|+++++|++|+|++|.|.+..|..|+++++|++|+|++|.+++..+..|+++++|++|+|+
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            34556777765555455689999999999999999999888899999999999999999997777778999999999999


Q ss_pred             cCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCcccc-------------------CCCCCCC
Q 044236          151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG-------------------KLPDMSA  211 (747)
Q Consensus       151 ~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-------------------~~p~~~~  211 (747)
                      +|.+++..|..|+.+++|+.|+|++|.+++..   +..+++|+.|++++|.+++                   ..+.  .
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~  230 (597)
T 3oja_B          156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--V  230 (597)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--C
T ss_pred             CCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--c
Confidence            99999999999999999999999999998753   3344555555555555443                   2222  1


Q ss_pred             CCcCCEEEccCCCCCCCCC-CCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecc
Q 044236          212 LTSLHVLDLRENKLDSGLP-LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLA  290 (747)
Q Consensus       212 l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  290 (747)
                      .++|+.|+|++|.+++... ...++|+.|+|++|.+++.+|..|+.+++|+.|+|++|.++++++ .+..+++|+.|+|+
T Consensus       231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLS  309 (597)
T ss_dssp             CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECC
T ss_pred             CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECC
Confidence            3579999999999887421 124689999999999999889999999999999999999998654 45778999999999


Q ss_pred             cccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          291 SNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       291 ~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      +|.++ .+|..+..++.|      ..+.+++|.+.
T Consensus       310 ~N~l~-~i~~~~~~l~~L------~~L~L~~N~l~  337 (597)
T 3oja_B          310 HNHLL-HVERNQPQFDRL------ENLYLDHNSIV  337 (597)
T ss_dssp             SSCCC-CCGGGHHHHTTC------SEEECCSSCCC
T ss_pred             CCCCC-ccCcccccCCCC------CEEECCCCCCC
Confidence            99988 566655444333      33445555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=4.6e-24  Score=241.57  Aligned_cols=155  Identities=21%  Similarity=0.308  Sum_probs=126.1

Q ss_pred             cCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCcccc--CCC-CCCCCCcCCEEEccCCCCCCCCCC----CCCC
Q 044236          163 DSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG--KLP-DMSALTSLHVLDLRENKLDSGLPL----MPKG  235 (747)
Q Consensus       163 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p-~~~~l~~L~~L~L~~N~l~~~~~~----~~~~  235 (747)
                      ..+++|+.|++++|++++.+|..++++++|+.|++++|.+++  .+| .+..+++|++|++++|++.+.+|.    ..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            678899999999999999899999999999999999999986  334 378899999999999999885553    2478


Q ss_pred             cceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcC-CCCCCCCCCCCcc
Q 044236          236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKD-LSCGSKLDSISDK  314 (747)
Q Consensus       236 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~~~~~l~~~~~~  314 (747)
                      |+.|++++|.+++.+|..+.  ++|+.|+|++|+|+.+++. +..+++|+.|++++|+++ .+|.. +..++.      .
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~------L  470 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLK-SVPDGIFDRLTS------L  470 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCC-CCCTTTTTTCTT------C
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCC-ccCHHHhccCCc------c
Confidence            99999999999988887765  7899999999999966554 458999999999999998 56765 444433      3


Q ss_pred             ceeeeccccCCCC
Q 044236          315 RVVKFGGNCLSYD  327 (747)
Q Consensus       315 ~~~~~~~n~~~~~  327 (747)
                      ..+.+++|.+.++
T Consensus       471 ~~L~l~~N~~~c~  483 (520)
T 2z7x_B          471 QKIWLHTNPWDCS  483 (520)
T ss_dssp             CEEECCSSCBCCC
T ss_pred             cEEECcCCCCccc
Confidence            4566777766653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=6.8e-24  Score=242.48  Aligned_cols=155  Identities=23%  Similarity=0.311  Sum_probs=129.4

Q ss_pred             cCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCC--C-CCCCCCcCCEEEccCCCCCCCCCC----CCCC
Q 044236          163 DSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL--P-DMSALTSLHVLDLRENKLDSGLPL----MPKG  235 (747)
Q Consensus       163 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~--p-~~~~l~~L~~L~L~~N~l~~~~~~----~~~~  235 (747)
                      +.+++|+.|++++|++++.+|..+.++++|+.|++++|.+++..  | .+..+++|+.|++++|++++.+|.    ..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            67889999999999999999999999999999999999999743  3 478999999999999999886654    2478


Q ss_pred             cceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcC-CCCCCCCCCCCcc
Q 044236          236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKD-LSCGSKLDSISDK  314 (747)
Q Consensus       236 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~~~~~l~~~~~~  314 (747)
                      |+.|++++|.+++.+|..+.  ++|+.|+|++|+|+.+++..+ .+++|+.|+|++|+++ .+|.. +..++.|      
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L------  499 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLK-SVPDGVFDRLTSL------  499 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCC-CCCTTSTTTCTTC------
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCC-CCCHHHHhcCCCC------
Confidence            99999999999988877665  689999999999997776655 9999999999999999 67765 5444444      


Q ss_pred             ceeeeccccCCCC
Q 044236          315 RVVKFGGNCLSYD  327 (747)
Q Consensus       315 ~~~~~~~n~~~~~  327 (747)
                      ..+.+++|.+.|+
T Consensus       500 ~~L~l~~N~~~c~  512 (562)
T 3a79_B          500 QYIWLHDNPWDCT  512 (562)
T ss_dssp             CCEECCSCCBCCC
T ss_pred             CEEEecCCCcCCC
Confidence            4556777766653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=1.8e-23  Score=244.82  Aligned_cols=249  Identities=19%  Similarity=0.181  Sum_probs=205.8

Q ss_pred             cEEEEecCCCCCCCCCC-CC-CCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcc
Q 044236           49 SVTGLKIMGDKPVKENT-AY-NGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMS  126 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls  126 (747)
                      .++.|+++++....... .+ ....+..++|+.+...+..|..++++++|++|+|++|.+.+..+..|+++++|++|+|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            57788888765421111 11 11345566788776666667889999999999999999987666689999999999999


Q ss_pred             cCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhc--CCccCcEEecccCcccc
Q 044236          127 SNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSIC--RIATLTDIAMSNNELSG  204 (747)
Q Consensus       127 ~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~  204 (747)
                      +|.+++..|..|+++++|++|+|++|.+++..|..++++++|+.|++++|.+++..+..+.  .+++|+.|++++|.+++
T Consensus       106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             CCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            9999988889999999999999999999999999999999999999999999988887765  56899999999999998


Q ss_pred             CCCC-CCCC---------------------------CcCCEEEccCCCCCCCCCCCC-----CCcceeecCCCcCcccCc
Q 044236          205 KLPD-MSAL---------------------------TSLHVLDLRENKLDSGLPLMP-----KGLVTVLLSRNLFSGAIP  251 (747)
Q Consensus       205 ~~p~-~~~l---------------------------~~L~~L~L~~N~l~~~~~~~~-----~~L~~L~ls~N~l~~~~p  251 (747)
                      ..|. +..+                           ++|+.|++++|.+.+..|..+     .+|+.|++++|.+++..|
T Consensus       186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~  265 (680)
T 1ziw_A          186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN  265 (680)
T ss_dssp             BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred             cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc
Confidence            7764 3322                           567888888888887766543     349999999999999889


Q ss_pred             hhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccc
Q 044236          252 QQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       252 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      ..|+.+++|+.|+|++|++++.+|..|..+++|+.|++++|...+.
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence            9999999999999999999999998888888888888888766553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.1e-23  Score=217.39  Aligned_cols=206  Identities=25%  Similarity=0.251  Sum_probs=181.0

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+++.  ..+.++++|++|+|++|.+++..+..|+.+++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            46788999999999999854 43 588999999999999999863  478999999999999999999888889999999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCC
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRN  244 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N  244 (747)
                      +.|++++|++++..+..|.++++|+.|++++|.+++..+. +..+++|+.|++++|++++..+..   .++|+.|++++|
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            9999999999988888899999999999999999987775 688999999999999998766543   478999999999


Q ss_pred             cCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCC
Q 044236          245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCG  305 (747)
Q Consensus       245 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~  305 (747)
                      .+++..|..|..+++|+.|+|++|.+.+.       +++|+.|++..|.++|.+|..+...
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            99998888899999999999999988654       5678999999999999999887543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.9e-25  Score=234.01  Aligned_cols=227  Identities=23%  Similarity=0.301  Sum_probs=189.5

Q ss_pred             cccccccCCCCCCEEEeeccCC-CCCCChhcc-------CCCCCCEEEcccCCCCCCCCccc--cCCCCCCEEEcccCCC
Q 044236           85 SFVTTLTRLTTLRVLSLVSLGI-WGPLPDKIH-------RLSSLELLDMSSNFLFGAIPSGI--SRLVRLQTLTMDTNFF  154 (747)
Q Consensus        85 ~~~~~l~~l~~L~~L~L~~n~i-~~~~p~~~~-------~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~~  154 (747)
                      .+|..+...  |+.|+|++|.+ .+.+|..+.       ++++|++|+|++|.+++.+|..+  ..+++|++|+|++|.+
T Consensus        56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  133 (312)
T 1wwl_A           56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW  133 (312)
T ss_dssp             CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred             ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence            556555554  88999999999 567888776       89999999999999999999987  9999999999999999


Q ss_pred             CCCCcccccCC-----CCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCC---CCC--CCCCcCCEEEccCCC
Q 044236          155 DDNVPDWWDSL-----SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL---PDM--SALTSLHVLDLRENK  224 (747)
Q Consensus       155 ~~~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~---p~~--~~l~~L~~L~L~~N~  224 (747)
                      ++. |..++.+     ++|++|+|++|++++..|..|+++++|+.|++++|.+.+.+   +.+  ..+++|++|+|++|+
T Consensus       134 ~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          134 ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence            987 8888877     99999999999999988899999999999999999988752   233  889999999999999


Q ss_pred             CCC--CCCC----CCCCcceeecCCCcCcccCc-hhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccc
Q 044236          225 LDS--GLPL----MPKGLVTVLLSRNLFSGAIP-QQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       225 l~~--~~~~----~~~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      +++  .++.    ..++|+.|+|++|.+++.+| ..+..+++|+.|+|++|+|+.++.. +.  ++|++|+|++|++++.
T Consensus       213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS-CC--SEEEEEECCSSCCCSC
T ss_pred             CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh-cc--CCceEEECCCCCCCCC
Confidence            984  2221    23689999999999999876 5677789999999999999965554 44  8999999999999866


Q ss_pred             cCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          298 LPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       298 ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                       |. +..+      +..+.+.+++|.++
T Consensus       290 -p~-~~~l------~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          290 -PS-PDEL------PQVGNLSLKGNPFL  309 (312)
T ss_dssp             -CC-TTTS------CEEEEEECTTCTTT
T ss_pred             -hh-HhhC------CCCCEEeccCCCCC
Confidence             54 4433      34455667777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=6e-24  Score=245.35  Aligned_cols=240  Identities=23%  Similarity=0.161  Sum_probs=157.6

Q ss_pred             CCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCC--CCccccCCCCCCEEEcccC
Q 044236           75 QTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGA--IPSGISRLVRLQTLTMDTN  152 (747)
Q Consensus        75 ~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N  152 (747)
                      ++++.+.. +.+| .+ .+++|+.|++++|...+.+  .++.+++|++|+|++|.+++.  +|..+..+++|++|+|++|
T Consensus       312 L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          312 LSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             EEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred             EEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence            34444433 5555 34 6666666666666444433  456677777777777776654  3666777777777777777


Q ss_pred             CCCCCCcccccCCCCCCEEEccCCcCCCCCc-hhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCC-C
Q 044236          153 FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSG-L  229 (747)
Q Consensus       153 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~-~  229 (747)
                      .+++ +|..+..+++|+.|++++|++++..| ..+.++++|+.|++++|.+++..|. +..+++|+.|++++|++.+. +
T Consensus       387 ~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  465 (606)
T 3vq2_A          387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL  465 (606)
T ss_dssp             SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch
Confidence            7665 45667777777777777777776666 5677777777777777777766653 66777777777777777653 3


Q ss_pred             CCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCC
Q 044236          230 PLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGS  306 (747)
Q Consensus       230 ~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~  306 (747)
                      |..   .++|++|++++|.+++..|..|..+++|+.|+|++|++++.+|..|..+++|+.|++++|+++ .+|..+..++
T Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred             HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence            432   356777777777777777777777777777777777777777777777777777777777776 5555543332


Q ss_pred             CCCCCCccceeeeccccCCC
Q 044236          307 KLDSISDKRVVKFGGNCLSY  326 (747)
Q Consensus       307 ~l~~~~~~~~~~~~~n~~~~  326 (747)
                      .     ....+.+++|.+.+
T Consensus       545 ~-----~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          545 K-----SLAFFNLTNNSVAC  559 (606)
T ss_dssp             T-----TCCEEECCSCCCCC
T ss_pred             c-----cCcEEEccCCCccc
Confidence            1     12345566665543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=3.7e-24  Score=229.76  Aligned_cols=226  Identities=20%  Similarity=0.235  Sum_probs=188.4

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|+++++|+.|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            48999999999998877779999999999999999999988999999999999999999999877777999999999999


Q ss_pred             cCCcCCCCCc-hhhcCCccCcEEecccCc-cccCCC-CCCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcCc
Q 044236          174 KSNQLKGQFP-SSICRIATLTDIAMSNNE-LSGKLP-DMSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFS  247 (747)
Q Consensus       174 ~~N~l~~~~p-~~~~~l~~L~~L~l~~N~-l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~  247 (747)
                      ++|++++..+ ..+.++++|+.|++++|+ +....+ .+..+++|+.|++++|.+++..|..   .++|++|++++|.++
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            9999996444 488999999999999995 666555 4889999999999999998876654   467899999999997


Q ss_pred             ccCchhhcCCcccCeeecccCcCcccCCc-------------------------------ccCCCCccceeecccccCcc
Q 044236          248 GAIPQQFGELAQLQHLDLSFNDLSGIPPS-------------------------------VLFSLPNISYLHLASNMLSG  296 (747)
Q Consensus       248 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-------------------------------~l~~l~~L~~L~l~~N~l~g  296 (747)
                      ...+..+..+++|+.|+|++|.+++.++.                               .+..+++|+.|++++|+++ 
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence            65555566789999999999999986533                               3557788999999999988 


Q ss_pred             ccCcCC-CCCCCCCCCCccceeeeccccCCC
Q 044236          297 TLPKDL-SCGSKLDSISDKRVVKFGGNCLSY  326 (747)
Q Consensus       297 ~ip~~~-~~~~~l~~~~~~~~~~~~~n~~~~  326 (747)
                      .+|..+ ..++.|      ..+.+++|.+.+
T Consensus       291 ~i~~~~~~~l~~L------~~L~L~~N~~~~  315 (353)
T 2z80_A          291 SVPDGIFDRLTSL------QKIWLHTNPWDC  315 (353)
T ss_dssp             CCCTTTTTTCTTC------CEEECCSSCBCC
T ss_pred             ccCHHHHhcCCCC------CEEEeeCCCccC
Confidence            666653 444433      445666665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=1.1e-23  Score=240.21  Aligned_cols=155  Identities=21%  Similarity=0.160  Sum_probs=73.8

Q ss_pred             CCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCC-CCCccccCCCCCCEEEccc
Q 044236           73 PNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFG-AIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        73 ~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~  151 (747)
                      ..++++.+...+..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++ .+|..|+++++|++|+|++
T Consensus        53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~  132 (549)
T 2z81_A           53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN  132 (549)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred             cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence            334444443333333455555555555555555555444445555555555555555544 2344555555555555555


Q ss_pred             CCCCCCCc-ccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCC
Q 044236          152 NFFDDNVP-DWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       152 N~~~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~  227 (747)
                      |.+.+.+| ..|.++++|+.|++++|++++..|..++++++|+.|++++|.+....+. +..+++|++|++++|++++
T Consensus       133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             CccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence            55322232 3555555555555555555555555544433333333322222110000 1124455555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1.6e-23  Score=228.13  Aligned_cols=242  Identities=22%  Similarity=0.186  Sum_probs=188.7

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      .+..++++.+...+..+..+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.++...+..|.++++|++|+|+
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            34556777665444344589999999999999999999888899999999999999999986666667999999999999


Q ss_pred             cCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCcccc-------------------CCCCCCC
Q 044236          151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG-------------------KLPDMSA  211 (747)
Q Consensus       151 ~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-------------------~~p~~~~  211 (747)
                      +|.+++..|..|..+++|+.|++++|++++..   +..+++|+.|++++|.+++                   ...  ..
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~  224 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PV  224 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CC
T ss_pred             CCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--cc
Confidence            99999988889999999999999999998653   3444555555555554443                   211  22


Q ss_pred             CCcCCEEEccCCCCCCCCC-CCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecc
Q 044236          212 LTSLHVLDLRENKLDSGLP-LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLA  290 (747)
Q Consensus       212 l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  290 (747)
                      .++|+.|++++|.+++... ...++|++|++++|.+++..|..|..+++|+.|+|++|++++.+. .+..+++|+.|+++
T Consensus       225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLS  303 (390)
T ss_dssp             CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECC
T ss_pred             cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECC
Confidence            4689999999999986421 124689999999999999889999999999999999999998754 45788999999999


Q ss_pred             cccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          291 SNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       291 ~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      +|+++ .+|..+..++.|      ..+.+++|.+.
T Consensus       304 ~n~l~-~~~~~~~~l~~L------~~L~L~~N~i~  331 (390)
T 3o6n_A          304 HNHLL-HVERNQPQFDRL------ENLYLDHNSIV  331 (390)
T ss_dssp             SSCCC-CCGGGHHHHTTC------SEEECCSSCCC
T ss_pred             CCcce-ecCccccccCcC------CEEECCCCccc
Confidence            99998 556554433333      33445555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1e-24  Score=243.85  Aligned_cols=204  Identities=21%  Similarity=0.172  Sum_probs=125.2

Q ss_pred             cccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCC
Q 044236           87 VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLS  166 (747)
Q Consensus        87 ~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~  166 (747)
                      |..|..+++|++|+|++|.+.+..|  |+.+++|++|+|++|.+++..+     .++|++|+|++|.+++..+.   .++
T Consensus        51 ~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~  120 (487)
T 3oja_A           51 AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQ  120 (487)
T ss_dssp             GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCS
T ss_pred             HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccC
Confidence            4456666666666666666655444  6666666666666666653222     25666666666666654442   346


Q ss_pred             CCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CC-CCCcCCEEEccCCCCCCCCCC-CCCCcceeecCC
Q 044236          167 NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MS-ALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSR  243 (747)
Q Consensus       167 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~-~l~~L~~L~L~~N~l~~~~~~-~~~~L~~L~ls~  243 (747)
                      +|+.|+|++|.+++..|..++++++|+.|++++|.+++.+|. +. .+++|+.|+|++|.|++..+. ..++|+.|+|++
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~  200 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS  200 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCC
Confidence            666777777777666666666666777777777776665543 33 566677777777766654322 245666677777


Q ss_pred             CcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc-cccCcCC
Q 044236          244 NLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS-GTLPKDL  302 (747)
Q Consensus       244 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-g~ip~~~  302 (747)
                      |.|++..| .|..+++|+.|+|++|.|+++++ .+..+++|+.|++++|.+. +.+|..+
T Consensus       201 N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          201 NKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             SCCCEECG-GGGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             CCCCCCCH-hHcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            77665433 36666667777777777666443 3566666777777776665 4444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=3.6e-23  Score=237.01  Aligned_cols=108  Identities=24%  Similarity=0.238  Sum_probs=56.1

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  151 (747)
                      +..++|+.+...+..+..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|+++++|++|+|++
T Consensus        54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~  133 (570)
T 2z63_A           54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH  133 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS
T ss_pred             ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC
Confidence            33344554432222234455566666666666655555555555555555555555555544444455555555555555


Q ss_pred             CCCCC-CCcccccCCCCCCEEEccCCcCC
Q 044236          152 NFFDD-NVPDWWDSLSNLTVLSLKSNQLK  179 (747)
Q Consensus       152 N~~~~-~~p~~~~~l~~L~~L~l~~N~l~  179 (747)
                      |.+++ .+|..|+++++|+.|++++|+++
T Consensus       134 n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             SCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             CccceecChhhhcccCCCCEEeCcCCccc
Confidence            55544 24555555555555555555443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.90  E-value=3e-25  Score=250.35  Aligned_cols=189  Identities=14%  Similarity=0.132  Sum_probs=140.7

Q ss_pred             ccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          444 SLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ..+.||+|+||.||+|+. .++.+|+|+.....        ....+.+.+|+++|++++||||+++..++...       
T Consensus       340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~-------  411 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDL-------  411 (540)
T ss_dssp             --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEET-------
T ss_pred             CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeC-------
Confidence            356899999999999965 46788999865321        11235689999999999999999666555542       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++|||||++|+|.+++..           +..++.|+++||.|||+   .+|+||||||+|||++.  .+||+|||
T Consensus       412 -~~~~lVmE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFG  474 (540)
T 3en9_A          412 -DNKRIMMSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFG  474 (540)
T ss_dssp             -TTTEEEEECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCT
T ss_pred             -CccEEEEECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECc
Confidence             256999999999999999864           45899999999999999   89999999999999998  99999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec--cCCCcCCceeehhHHHHHHhhCCCCC
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI--QRTKLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                      +++...........     ........++++.|++||++..  ..|+.++|+||..+-..|.+.++.++
T Consensus       475 la~~~~~~~~~~~~-----~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          475 LGKISNLDEDKAVD-----LIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             TCEECCCHHHHHHH-----HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             cCEECCCccccccc-----hhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            99877543221100     0000112467889999999976  66888899999998888877766554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.1e-23  Score=215.71  Aligned_cols=204  Identities=21%  Similarity=0.143  Sum_probs=176.0

Q ss_pred             CCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      .+..++++.+...+..+..+.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34556666654433334489999999999999999988888899999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcccccCCCCCCEEEccCCcCCCC-CchhhcCCccCcEEecccCccccCCC-CCCCCCcCC----EEEccCCC
Q 044236          151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQ-FPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLH----VLDLRENK  224 (747)
Q Consensus       151 ~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~----~L~L~~N~  224 (747)
                      +|.+.+..+..++.+++|+.|++++|++++. +|..+.++++|+.|++++|.+++..+ .+..+.+|+    .|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            9999998887899999999999999999874 69999999999999999999998765 355555555    89999999


Q ss_pred             CCCCCCCCC--CCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccC
Q 044236          225 LDSGLPLMP--KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIP  274 (747)
Q Consensus       225 l~~~~~~~~--~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  274 (747)
                      +++..+...  .+|+.|++++|.+++..+..|..+++|+.|+|++|.+++..
T Consensus       189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            987655432  47999999999999887788899999999999999998654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=4.5e-23  Score=235.08  Aligned_cols=234  Identities=18%  Similarity=0.213  Sum_probs=152.1

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCC-CCChhccCCCCCCEEEcccCCCCCCCC-ccccCCCCCCEEEc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWG-PLPDKIHRLSSLELLDMSSNFLFGAIP-SGISRLVRLQTLTM  149 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L  149 (747)
                      +..++++.+...+..+..++++++|++|+|++|.+.+ .+|..|+++++|++|+|++|.+.+.+| ..|.++++|++|+|
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence            4445677665555555568888888888888888876 467788888888888888888555554 57888888888888


Q ss_pred             ccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchh-hcCCccCcEEecccCccccCC----CCCCCC------------
Q 044236          150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSS-ICRIATLTDIAMSNNELSGKL----PDMSAL------------  212 (747)
Q Consensus       150 ~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~----p~~~~l------------  212 (747)
                      ++|.+++..|..++.+++|+.|+++.|.+.. +|.. +..+++|+.|++++|.+++..    +....+            
T Consensus       156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             cCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            8888888888887776666666666665542 3322 234555555555555555421    000001            


Q ss_pred             ---------------------------------------------------------------------------CcCCE
Q 044236          213 ---------------------------------------------------------------------------TSLHV  217 (747)
Q Consensus       213 ---------------------------------------------------------------------------~~L~~  217 (747)
                                                                                                 .+|+.
T Consensus       235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~  314 (549)
T 2z81_A          235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR  314 (549)
T ss_dssp             EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred             cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence                                                                                       12333


Q ss_pred             EEccCCCCCCCCCC----CCCCcceeecCCCcCcccCch---hhcCCcccCeeecccCcCcccCC--cccCCCCccceee
Q 044236          218 LDLRENKLDSGLPL----MPKGLVTVLLSRNLFSGAIPQ---QFGELAQLQHLDLSFNDLSGIPP--SVLFSLPNISYLH  288 (747)
Q Consensus       218 L~L~~N~l~~~~~~----~~~~L~~L~ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~  288 (747)
                      |++++|.+. .+|.    ..++|++|++++|.+++.+|.   .++.+++|+.|+|++|++++.++  ..+..+++|++|+
T Consensus       315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~  393 (549)
T 2z81_A          315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD  393 (549)
T ss_dssp             EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred             EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence            344444332 2221    135677788888888776643   36677788888888888877654  4567777888888


Q ss_pred             cccccCccccCcCCCCCCCC
Q 044236          289 LASNMLSGTLPKDLSCGSKL  308 (747)
Q Consensus       289 l~~N~l~g~ip~~~~~~~~l  308 (747)
                      +++|+++ .+|..+...+.|
T Consensus       394 Ls~N~l~-~lp~~~~~~~~L  412 (549)
T 2z81_A          394 ISRNTFH-PMPDSCQWPEKM  412 (549)
T ss_dssp             CTTCCCC-CCCSCCCCCTTC
T ss_pred             CCCCCCc-cCChhhcccccc
Confidence            8888777 567665544444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=5.2e-22  Score=219.98  Aligned_cols=232  Identities=19%  Similarity=0.133  Sum_probs=139.0

Q ss_pred             cEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccC
Q 044236           49 SVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSN  128 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N  128 (747)
                      +++.|+++++.+...+.......+..++++.+. +..++  ++.+++|++|+|++|.|.+. |  |+++++|++|+|++|
T Consensus        43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCCcccChhhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence            455666665543211100011233344555543 22333  66777777777777777653 3  667777777777777


Q ss_pred             CCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC
Q 044236          129 FLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD  208 (747)
Q Consensus       129 ~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  208 (747)
                      .+++ +|  ++.+++|++|+|++|.+++. +  ++.+++|+.|++++|+..+.+  .+..+++|+.|++++|++++. | 
T Consensus       117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~-  186 (457)
T 3bz5_A          117 KLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D-  186 (457)
T ss_dssp             CCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C-
T ss_pred             cCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c-
Confidence            7765 33  66777777777777777663 2  666677777777777555444  356667777777777777653 3 


Q ss_pred             CCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCC------
Q 044236          209 MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP------  282 (747)
Q Consensus       209 ~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~------  282 (747)
                      +..+++|+.|++++|++++......++|+.|++++|.+++ +|  ++.+++|+.|++++|++++.++..+.++.      
T Consensus       187 l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ  263 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred             cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence            6666677777777777665422234566777777777766 44  66667777777777777766655544443      


Q ss_pred             -ccceeecccccCccccC
Q 044236          283 -NISYLHLASNMLSGTLP  299 (747)
Q Consensus       283 -~L~~L~l~~N~l~g~ip  299 (747)
                       +|+.|++++|.+.|.+|
T Consensus       264 n~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          264 TDLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CCCSCCCCTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCCccc
Confidence             44455555555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=8.2e-24  Score=236.55  Aligned_cols=214  Identities=23%  Similarity=0.279  Sum_probs=182.6

Q ss_pred             CCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEE
Q 044236           92 RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL  171 (747)
Q Consensus        92 ~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L  171 (747)
                      .+++|++|+|++|.|.+..|..|+++++|++|+|++|.+++..|  |..+++|++|+|++|.+++..+     .++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34489999999999999888999999999999999999988776  9999999999999999986433     3899999


Q ss_pred             EccCCcCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCCCC----CCCcceeecCCCcC
Q 044236          172 SLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLM----PKGLVTVLLSRNLF  246 (747)
Q Consensus       172 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~~----~~~L~~L~ls~N~l  246 (747)
                      ++++|.+++..+.   .+++|+.|++++|.+++..| .++.+++|+.|+|++|.+++..|..    .++|+.|+|++|.|
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999999986654   45789999999999999877 5788999999999999999866542    47899999999999


Q ss_pred             cccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          247 SGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       247 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      ++..+  +..+++|+.|+|++|.|++++|. +..+++|+.|+|++|.+++ +|..+..++.|      ..+.+++|.+.
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L------~~L~l~~N~l~  250 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNL------EHFDLRGNGFH  250 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTC------CEEECTTCCBC
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCC------CEEEcCCCCCc
Confidence            98733  34689999999999999998887 8899999999999999995 77766554444      44566666544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.1e-22  Score=209.49  Aligned_cols=200  Identities=22%  Similarity=0.251  Sum_probs=168.8

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+.++++|+.+++++|++. .+|..+.  ++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..+  .+.+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            4678899999999999996 4676654  689999999999998889999999999999999999987533  2789999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCC
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRN  244 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N  244 (747)
                      +.|++++|+++ .+|..+.++++|+.|++++|++++..+. |..+++|+.|+|++|++++..+..   .++|+.|+|++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            99999999998 6788899999999999999999987764 788999999999999998655533   357888888888


Q ss_pred             cCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       245 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      +|++..+..|..+++|+.|+|++|+|+.+++. +..+++|+.|+|++|++.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCcc
Confidence            88876667778888888888888888866554 456778888888888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=9.9e-23  Score=205.91  Aligned_cols=192  Identities=17%  Similarity=0.233  Sum_probs=162.5

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCC-CCCCCCccccCCCCCCEEEccc-CCCCCCCcccccCCCCCCEEE
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF-LFGAIPSGISRLVRLQTLTMDT-NFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      +|++|+|++|+|.+..+..|.++++|++|+|++|. ++...+..|.++++|++|+|++ |.+++..+..|.++++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            79999999999988777799999999999999997 8877777999999999999998 999988788999999999999


Q ss_pred             ccCCcCCCCCchhhcCCccCc---EEecccC-ccccCCCC-CCCCCcCC-EEEccCCCCCCCCCC-C--CCCcceeecCC
Q 044236          173 LKSNQLKGQFPSSICRIATLT---DIAMSNN-ELSGKLPD-MSALTSLH-VLDLRENKLDSGLPL-M--PKGLVTVLLSR  243 (747)
Q Consensus       173 l~~N~l~~~~p~~~~~l~~L~---~L~l~~N-~l~~~~p~-~~~l~~L~-~L~L~~N~l~~~~~~-~--~~~L~~L~ls~  243 (747)
                      +++|++++ +|. |.++++|+   .|++++| .+++..+. +..+++|+ .|++++|+++. +|. .  ..+|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCC
Confidence            99999997 676 88888888   9999999 99877764 78899999 99999999873 332 1  24678888888


Q ss_pred             Cc-CcccCchhhcCC-cccCeeecccCcCcccCCcccCCCCccceeecccc
Q 044236          244 NL-FSGAIPQQFGEL-AQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN  292 (747)
Q Consensus       244 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  292 (747)
                      |. +++..+..|..+ ++|+.|+|++|+|+++++.   .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            84 887667778888 8888888888888877665   4567777777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=5.3e-24  Score=224.90  Aligned_cols=217  Identities=21%  Similarity=0.147  Sum_probs=135.5

Q ss_pred             CCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCC
Q 044236           75 QTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFF  154 (747)
Q Consensus        75 ~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~  154 (747)
                      ++|+.+...+..+..+.++++|++|+|++|.+.+..|  |..+++|++|+|++|.+++..     .+++|++|++++|.+
T Consensus        39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l  111 (317)
T 3o53_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNI  111 (317)
T ss_dssp             EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCC
T ss_pred             EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCcc
Confidence            3444443333334556666667777776666655443  666666777777766664322     236666777777766


Q ss_pred             CCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-C-CCCCcCCEEEccCCCCCCCCCC-
Q 044236          155 DDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-M-SALTSLHVLDLRENKLDSGLPL-  231 (747)
Q Consensus       155 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~-~~l~~L~~L~L~~N~l~~~~~~-  231 (747)
                      ++..+.   .+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+. + ..+++|++|+|++|.+++.... 
T Consensus       112 ~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  188 (317)
T 3o53_A          112 SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV  188 (317)
T ss_dssp             SEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred             CCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence            654433   356677777777777766666677777777777777777765443 3 3567777777777776643221 


Q ss_pred             CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc-cccCcCCC
Q 044236          232 MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS-GTLPKDLS  303 (747)
Q Consensus       232 ~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-g~ip~~~~  303 (747)
                      ..++|++|+|++|.+++. |..|..+++|+.|+|++|+|+++++ .+..+++|+.|++++|++. +.+|..+.
T Consensus       189 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            245677777777777754 3346677777777777777776543 4666777777777777776 44554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=3.1e-23  Score=218.25  Aligned_cols=199  Identities=22%  Similarity=0.212  Sum_probs=144.9

Q ss_pred             CCCCCCEEEeeccCCCCCCChhc--cCCCCCCEEEcccCCCCCCCC----ccccCCCCCCEEEcccCCCCCCCcccccCC
Q 044236           92 RLTTLRVLSLVSLGIWGPLPDKI--HRLSSLELLDMSSNFLFGAIP----SGISRLVRLQTLTMDTNFFDDNVPDWWDSL  165 (747)
Q Consensus        92 ~l~~L~~L~L~~n~i~~~~p~~~--~~L~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l  165 (747)
                      .+++|++|+|++|.+.+..|..+  +++++|++|+|++|.+++..|    ..+..+++|++|+|++|.+.+..|..|+.+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            34568888888888888888777  788888888888888877655    345677888888888888887777788888


Q ss_pred             CCCCEEEccCCcCCCC--C--chhhcCCccCcEEecccCccccCCCC----CCCCCcCCEEEccCCCCCCCCCCC-----
Q 044236          166 SNLTVLSLKSNQLKGQ--F--PSSICRIATLTDIAMSNNELSGKLPD----MSALTSLHVLDLRENKLDSGLPLM-----  232 (747)
Q Consensus       166 ~~L~~L~l~~N~l~~~--~--p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~l~~L~~L~L~~N~l~~~~~~~-----  232 (747)
                      ++|+.|+|++|++.+.  +  +..+.++++|+.|++++|+++...+.    +..+++|++|+|++|++++..|..     
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            8888888888887642  2  22336777888888888888632221    356678888888888887765432     


Q ss_pred             -CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          233 -PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       233 -~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                       +++|++|+|++|.|+ .+|..+.  ++|+.|+|++|+|++.+.  +..+++|+.|+|++|+++
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCC
Confidence             257778888888887 5566654  678888888888887632  567788888888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=4.4e-22  Score=213.03  Aligned_cols=256  Identities=23%  Similarity=0.302  Sum_probs=200.0

Q ss_pred             cEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccC
Q 044236           49 SVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSN  128 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N  128 (747)
                      .++.|++.++.............+..++++.+. +..++. +..+++|++|++++|.....++. +..+++|++|++++|
T Consensus        89 ~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A           89 KLTNLYIGTNKITDISALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES  165 (347)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS
T ss_pred             cCCEEEccCCcccCchHHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC
Confidence            466677766544211111112344456676654 344554 89999999999999976665554 999999999999999


Q ss_pred             CCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC
Q 044236          129 FLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD  208 (747)
Q Consensus       129 ~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  208 (747)
                      .+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+ 
T Consensus       166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             CCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence            9876554  8899999999999999987544  8899999999999999986554  8899999999999999987655 


Q ss_pred             CCCCCcCCEEEccCCCCCCCC-CCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCcccee
Q 044236          209 MSALTSLHVLDLRENKLDSGL-PLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL  287 (747)
Q Consensus       209 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  287 (747)
                      +..+++|+.|++++|.+++.- ....++|+.|++++|.+++.  ..+..+++|+.|+|++|.+++.++..+..+++|+.|
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            889999999999999987631 12357899999999999975  468899999999999999999999999999999999


Q ss_pred             ecccccCccccCcCCCCCCCCCCCCccceeeeccccC
Q 044236          288 HLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCL  324 (747)
Q Consensus       288 ~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~  324 (747)
                      ++++|++++..|  +..++.|      ..+.+++|.+
T Consensus       317 ~L~~n~l~~~~~--~~~l~~L------~~L~l~~N~i  345 (347)
T 4fmz_A          317 FLSQNHITDIRP--LASLSKM------DSADFANQVI  345 (347)
T ss_dssp             ECCSSSCCCCGG--GGGCTTC------SEESSSCC--
T ss_pred             EccCCccccccC--hhhhhcc------ceeehhhhcc
Confidence            999999997766  4444443      3445555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=6.9e-22  Score=211.49  Aligned_cols=258  Identities=22%  Similarity=0.298  Sum_probs=207.3

Q ss_pred             cEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccC
Q 044236           49 SVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSN  128 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N  128 (747)
                      .++.|++.++.............+..++++.+ .+..++ .+.++++|++|+|++|.+.+ +|. +.++++|+.|++++|
T Consensus        67 ~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGAN  142 (347)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTC
T ss_pred             CccEEEccCCccccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCC
Confidence            57778887765421111111234555677766 344454 69999999999999999976 444 999999999999999


Q ss_pred             CCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC
Q 044236          129 FLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD  208 (747)
Q Consensus       129 ~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  208 (747)
                      .....++. +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+ 
T Consensus       143 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-  216 (347)
T 4fmz_A          143 HNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-  216 (347)
T ss_dssp             TTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-
Confidence            77666555 9999999999999999987544  8999999999999999986443  8899999999999999987655 


Q ss_pred             CCCCCcCCEEEccCCCCCCCCC-CCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCcccee
Q 044236          209 MSALTSLHVLDLRENKLDSGLP-LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL  287 (747)
Q Consensus       209 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  287 (747)
                      +..+++|+.|++++|.+++..+ ...++|++|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L  292 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL  292 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE
Confidence            8889999999999999987544 2357899999999999974  5789999999999999999987  358899999999


Q ss_pred             ecccccCccccCcCCCCCCCCCCCCccceeeeccccCCC
Q 044236          288 HLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSY  326 (747)
Q Consensus       288 ~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~~  326 (747)
                      ++++|.+++..|..+..++.|      +.+.+++|.+..
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L------~~L~L~~n~l~~  325 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNL------TTLFLSQNHITD  325 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTC------SEEECCSSSCCC
T ss_pred             ECcCCcCCCcChhHhhccccC------CEEEccCCcccc
Confidence            999999998888776655544      445666776554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1e-21  Score=217.65  Aligned_cols=209  Identities=24%  Similarity=0.213  Sum_probs=153.5

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  151 (747)
                      +..++++.+. +..+| .+..+++|++|+|++|.|.+. |  ++.+++|++|+|++|.+++. |  ++++++|++|+|++
T Consensus        44 L~~L~Ls~n~-l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           44 LTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             CCEEECCSSC-CCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred             CCEEEccCCC-cccCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence            4445565553 23344 577888888888888888663 4  77888888888888887764 3  77888888888888


Q ss_pred             CCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC
Q 044236          152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL  231 (747)
Q Consensus       152 N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~  231 (747)
                      |.+++ +|  ++.+++|+.|++++|++++. +  ++++++|+.|++++|...+.+ .+..+++|+.|++++|++++....
T Consensus       116 N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~l~  188 (457)
T 3bz5_A          116 NKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVS  188 (457)
T ss_dssp             SCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCCCT
T ss_pred             CcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceeccc
Confidence            88876 34  77888888888888888763 3  777888888888888666555 467778888888888888763323


Q ss_pred             CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcC
Q 044236          232 MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKD  301 (747)
Q Consensus       232 ~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~  301 (747)
                      ..++|+.|++++|.+++.   .++.+++|+.|+|++|++++++   +..+++|+.|++++|++++..+..
T Consensus       189 ~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~  252 (457)
T 3bz5_A          189 QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST  252 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred             cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHH
Confidence            356788888888888865   3777888888888888888853   677888888888888887654333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=7e-22  Score=201.23  Aligned_cols=179  Identities=24%  Similarity=0.296  Sum_probs=136.7

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK  174 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~  174 (747)
                      +.+.++++++++. .+|..+.  ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|..+++|+.|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4567777777774 4666554  578888888888887777778888888888888888888777778888888888888


Q ss_pred             CCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchh
Q 044236          175 SNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQ  253 (747)
Q Consensus       175 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~  253 (747)
                      +|++++..+..|.++++|+.|++++|.+++..+. +..+++|+.|+|++|+|+                     +..+..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------------------~~~~~~  150 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ---------------------SIPAGA  150 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------CCCTTT
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC---------------------ccCHHH
Confidence            8888877677777888888888888888766554 566777777777666654                     344456


Q ss_pred             hcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccc
Q 044236          254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       254 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      |..+++|+.|+|++|+|++.++..|..+++|+.|+|++|++.+.
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            77788888888888888888887788888888888888887755

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=231.99  Aligned_cols=244  Identities=21%  Similarity=0.211  Sum_probs=192.7

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  151 (747)
                      +..++++.+. +..+|..+..+ +|+.|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|+|++
T Consensus       284 L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~  356 (570)
T 2z63_A          284 VSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR  356 (570)
T ss_dssp             CSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred             ccEEEecCcc-chhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence            4444555443 34678888888 9999999999986 5665  5788899999999988777665  7788899999999


Q ss_pred             CCCCCCC--cccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCC--CCCCCCcCCEEEccCCCCCC
Q 044236          152 NFFDDNV--PDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP--DMSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       152 N~~~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~L~~L~L~~N~l~~  227 (747)
                      |.+++..  |..+..+++|+.|++++|.+++..+. +.++++|+.|++++|.+.+..+  .+..+++|++|++++|.+.+
T Consensus       357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            9887654  67788889999999999988864444 8888999999999999887766  47788899999999998877


Q ss_pred             CCCCC---CCCcceeecCCCcCc-ccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCC
Q 044236          228 GLPLM---PKGLVTVLLSRNLFS-GAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS  303 (747)
Q Consensus       228 ~~~~~---~~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~  303 (747)
                      ..|..   .++|++|++++|.++ +.+|..|..+++|+.|+|++|++++.+|..|..+++|++|++++|++++..|..+.
T Consensus       436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            66643   467888999999887 57888888899999999999999988888888899999999999998877776665


Q ss_pred             CCCCCCCCCccceeeeccccCCCCCC
Q 044236          304 CGSKLDSISDKRVVKFGGNCLSYDTP  329 (747)
Q Consensus       304 ~~~~l~~~~~~~~~~~~~n~~~~~~~  329 (747)
                      .++.|      ..+.+++|.+.++.+
T Consensus       516 ~l~~L------~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          516 RLTSL------QKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TCTTC------CEEECCSSCBCCCTT
T ss_pred             cccCC------cEEEecCCcccCCCc
Confidence            55444      445667776665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=2e-21  Score=200.07  Aligned_cols=201  Identities=23%  Similarity=0.305  Sum_probs=168.0

Q ss_pred             CCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC
Q 044236           96 LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        96 L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~  175 (747)
                      ++.+++++++++ .+|..+.  ++|+.|+|++|.+++..+..|.++++|++|+|++|.++...+..|..+++|+.|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            567888899986 4776654  6899999999999988888999999999999999999987777789999999999999


Q ss_pred             CcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhh
Q 044236          176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQF  254 (747)
Q Consensus       176 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~  254 (747)
                      |++++..+..|.++++|+.|++++|.+++..+. +..+++|++|+|++|.++                     +..+..|
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------------------~~~~~~~  153 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ---------------------SLPKGVF  153 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------CCCTTTT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC---------------------ccCHhHc
Confidence            999987778889999999999999999887764 678888888888777665                     3445568


Q ss_pred             cCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCCC
Q 044236          255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSY  326 (747)
Q Consensus       255 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~~  326 (747)
                      ..+++|+.|+|++|+++++++..|..+++|+.|+|++|++++..+..+..++.|      ..+.+++|...+
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------~~L~l~~N~~~c  219 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL------KMLQLQENPWDC  219 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC------CEEECCSSCBCC
T ss_pred             cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC------CEEEecCCCeeC
Confidence            899999999999999999999999999999999999999996555445444433      456677775543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=2.9e-23  Score=219.21  Aligned_cols=217  Identities=22%  Similarity=0.273  Sum_probs=182.9

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|  |..+++|++|+|++|.+++..     ..++|
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L  101 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI  101 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence            45567799999999999999888999999999999999999987665  999999999999999987633     34899


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCCC----CCCCcceeecCC
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPL----MPKGLVTVLLSR  243 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~----~~~~L~~L~ls~  243 (747)
                      +.|++++|++++..+..   +++|+.|++++|.+++..+ .+..+++|++|+|++|.+++..+.    ..++|++|+|++
T Consensus       102 ~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          102 ETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            99999999999765543   6789999999999998777 578899999999999999875543    247899999999


Q ss_pred             CcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeecccc
Q 044236          244 NLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNC  323 (747)
Q Consensus       244 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~  323 (747)
                      |.+++. |. ...+++|+.|+|++|+|+++++. +..+++|+.|+|++|+++ .+|..+..++.|      ..+.+++|.
T Consensus       179 N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L------~~L~l~~N~  248 (317)
T 3o53_A          179 NFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNL------EHFDLRGNG  248 (317)
T ss_dssp             SCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTC------CEEECTTCC
T ss_pred             CcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCC------CEEEccCCC
Confidence            999976 33 33589999999999999998876 889999999999999998 578776555444      445666665


Q ss_pred             CC
Q 044236          324 LS  325 (747)
Q Consensus       324 ~~  325 (747)
                      +.
T Consensus       249 ~~  250 (317)
T 3o53_A          249 FH  250 (317)
T ss_dssp             CB
T ss_pred             cc
Confidence            44

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.88  E-value=4e-23  Score=213.64  Aligned_cols=140  Identities=15%  Similarity=0.117  Sum_probs=112.8

Q ss_pred             HHHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccch------------------hcHHHHHHHHHHHhcCCCC
Q 044236          435 LKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK------------------YSIQNLKVRLDFLSKLQHP  496 (747)
Q Consensus       435 l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~------------------~~~~~~~~E~~~l~~l~H~  496 (747)
                      +......|.+.+.||+|+||.||+|+..+|+.||||.++....                  .....+.+|+++|++++  
T Consensus        85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--  162 (282)
T 1zar_A           85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--  162 (282)
T ss_dssp             HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--
Confidence            3344445667799999999999999997799999999963221                  13467889999999999  


Q ss_pred             CcceeeeeeeccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044236          497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRL  576 (747)
Q Consensus       497 nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  576 (747)
                      | +++.+++..         +..++||||+++|+|.+ +..         .....++.|+++||.|||+   .+|+||||
T Consensus       163 ~-~~v~~~~~~---------~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~---~giiHrDl  219 (282)
T 1zar_A          163 G-LAVPKVYAW---------EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYH---RGIVHGDL  219 (282)
T ss_dssp             T-SSSCCEEEE---------ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             C-CCcCeEEec---------cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHH---CCCEeCCC
Confidence            5 666665533         24699999999999998 432         1234699999999999999   89999999


Q ss_pred             CCCceeecCCCcEEEecccccccc
Q 044236          577 TTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       577 k~~NILld~~~~~kl~DFGla~~~  600 (747)
                      ||+|||++ ++.+||+|||+|+..
T Consensus       220 kp~NILl~-~~~vkl~DFG~a~~~  242 (282)
T 1zar_A          220 SQYNVLVS-EEGIWIIDFPQSVEV  242 (282)
T ss_dssp             STTSEEEE-TTEEEECCCTTCEET
T ss_pred             CHHHEEEE-CCcEEEEECCCCeEC
Confidence            99999999 999999999999643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=1.8e-21  Score=216.98  Aligned_cols=198  Identities=29%  Similarity=0.418  Sum_probs=98.2

Q ss_pred             ccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCc--------------------cccCCCCCCEEEc
Q 044236           90 LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPS--------------------GISRLVRLQTLTM  149 (747)
Q Consensus        90 l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~--------------------~~~~l~~L~~L~L  149 (747)
                      +.++++|++|+|++|.+.+. |. +.++++|++|+|++|.+.+. |.                    .+.++++|++|++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l  184 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI  184 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred             hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEEC
Confidence            55555555555555555443 22 55555555555555554432 11                    1333444444444


Q ss_pred             ccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCC
Q 044236          150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL  229 (747)
Q Consensus       150 ~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~  229 (747)
                      ++|.+++.  ..+..+++|+.|++++|.+++..|  ++.+++|+.|++++|.+++ ++.+..+++|+.|++++|.+.+..
T Consensus       185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~  259 (466)
T 1o6v_A          185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLA  259 (466)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccch
Confidence            44444332  124444444444444444443333  3444455555555554443 233444555555555555554433


Q ss_pred             CC-CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccC
Q 044236          230 PL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP  299 (747)
Q Consensus       230 ~~-~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip  299 (747)
                      +. ..++|+.|++++|.+++..+  +..+++|+.|+|++|++++.++  +..+++|+.|++++|++++..|
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          260 PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            21 23455566666666654333  5555666666666666655544  4556666666666666655443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.4e-21  Score=201.40  Aligned_cols=186  Identities=24%  Similarity=0.262  Sum_probs=167.6

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..+++|++|+|++|.+.+ + +.++++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|+.+++|
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL  135 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence            47889999999999999977 3 479999999999999999998888889999999999999999999888889999999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCC
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRN  244 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N  244 (747)
                      +.|++++|++++..+..+.++++|+.|++++|++++..+. +..+++|+.|++++|++++..+..   .++|+.|++++|
T Consensus       136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            9999999999988888889999999999999999987775 688999999999999999876643   478999999999


Q ss_pred             cCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCc
Q 044236          245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN  283 (747)
Q Consensus       245 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  283 (747)
                      .+.+.       +++|+.|+++.|.++|.+|..++.++.
T Consensus       216 ~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          216 PWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             Ccccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            98864       457899999999999999998876654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.87  E-value=2.2e-21  Score=216.29  Aligned_cols=232  Identities=24%  Similarity=0.300  Sum_probs=138.5

Q ss_pred             cEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccC
Q 044236           49 SVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSN  128 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N  128 (747)
                      +++.|.+.+......+..-....+..++++.+. +..++. +.++++|++|+|++|.+.+..|  ++++++|++|+|++|
T Consensus        47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN  122 (466)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             cccEEecCCCCCccCcchhhhcCCCEEECCCCc-cCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC
Confidence            456666655443111111112345556677654 344554 8999999999999999977554  899999999999999


Q ss_pred             CCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC
Q 044236          129 FLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD  208 (747)
Q Consensus       129 ~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  208 (747)
                      .+++..+  +.++++|++|+|++|.+.+. + .++.+++|+.|+++ |.+.+..  .+.++++|+.|++++|.+++ ++.
T Consensus       123 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~~  194 (466)
T 1o6v_A          123 QITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD-ISV  194 (466)
T ss_dssp             CCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC-CGG
T ss_pred             CCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC-Chh
Confidence            9876543  88999999999999988763 3 35556555555554 3333221  25555666666666665543 234


Q ss_pred             CCCCCcCCEEEccCCCCCCCCCC-CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCcccee
Q 044236          209 MSALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL  287 (747)
Q Consensus       209 ~~~l~~L~~L~L~~N~l~~~~~~-~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  287 (747)
                      +..+++|+.|++++|.+.+..|. ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.++  +..+++|+.|
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  270 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL  270 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence            55555566666666655543331 134455555555555532  234555555555555555555443  4455555555


Q ss_pred             ecccccCcc
Q 044236          288 HLASNMLSG  296 (747)
Q Consensus       288 ~l~~N~l~g  296 (747)
                      ++++|.+++
T Consensus       271 ~l~~n~l~~  279 (466)
T 1o6v_A          271 KLGANQISN  279 (466)
T ss_dssp             ECCSSCCCC
T ss_pred             ECCCCccCc
Confidence            555555553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=2.8e-22  Score=221.92  Aligned_cols=143  Identities=27%  Similarity=0.446  Sum_probs=82.9

Q ss_pred             CCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccC
Q 044236          143 RLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRE  222 (747)
Q Consensus       143 ~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~  222 (747)
                      +|++|+|++|.+++ +| .|+++++|++|++++|++++ +|..+   .+|+.|++++|.+++ +|.+..+++|+.|++++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADN  204 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCC
Confidence            45555555555554 44 35555666666666665553 34322   355666666666655 34566666666666666


Q ss_pred             CCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCc
Q 044236          223 NKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK  300 (747)
Q Consensus       223 N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~  300 (747)
                      |++++ +|..+.+|++|++++|.++ .+| .|+.+++|+.|++++|++++++.    .+++|+.|++++|++++ +|.
T Consensus       205 N~l~~-l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~  274 (454)
T 1jl5_A          205 NSLKK-LPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPE  274 (454)
T ss_dssp             SCCSS-CCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCC
T ss_pred             CcCCc-CCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCc
Confidence            66654 4444456666666666666 445 36666666666666666666443    13566666666666664 443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=6.4e-22  Score=207.81  Aligned_cols=195  Identities=21%  Similarity=0.328  Sum_probs=169.1

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+.++++|+.|++++|.+.. +| .+..+++|++|+|++|.+.+..+  +..+++|++|+|++|.+++. + .+..+++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L  109 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSI  109 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTC
T ss_pred             cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCC
Confidence            45678899999999999865 56 68999999999999999976554  99999999999999999874 3 68999999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCC-CCCCCcceeecCCCcCc
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLP-LMPKGLVTVLLSRNLFS  247 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~ls~N~l~  247 (747)
                      +.|++++|++++. |. +.++++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ ...++|+.|++++|.++
T Consensus       110 ~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          110 KTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             CEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccC
Confidence            9999999999864 43 8999999999999999986544 8889999999999999986443 23578999999999999


Q ss_pred             ccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCcc
Q 044236          248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSG  296 (747)
Q Consensus       248 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g  296 (747)
                      +..+  +..+++|+.|+|++|++++.++  +..+++|+.|++++|++++
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            7554  8899999999999999999875  7899999999999999975

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.6e-21  Score=198.48  Aligned_cols=161  Identities=25%  Similarity=0.276  Sum_probs=144.6

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      .+|+.|+|++|++.+..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|+.|+|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            58999999999999988889999999999999999999999999999999999999999999988889999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCch
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ  252 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~  252 (747)
                      ++|++++..+..|.++++|+.|+|++|.+++..+ .+..+++|+.|+|++|++++                     ..+.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------~~~~  173 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS---------------------VPHG  173 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---------------------CCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc---------------------cCHH
Confidence            9999998777888999999999999999998777 47888889888888887653                     4455


Q ss_pred             hhcCCcccCeeecccCcCcccCC
Q 044236          253 QFGELAQLQHLDLSFNDLSGIPP  275 (747)
Q Consensus       253 ~~~~l~~L~~L~Ls~N~l~~~~~  275 (747)
                      .|..+++|+.|+|++|.+++...
T Consensus       174 ~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             TTTTCTTCCEEECCSCCBCTTST
T ss_pred             HHhCCCCCCEEEeeCCceeCCcc
Confidence            77788889999999998877643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=4.8e-21  Score=199.17  Aligned_cols=201  Identities=23%  Similarity=0.234  Sum_probs=172.9

Q ss_pred             hccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccC
Q 044236          113 KIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL  192 (747)
Q Consensus       113 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L  192 (747)
                      .++++++|+.+++++|.++ .+|..+.  ++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+.  ..+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            3678999999999999997 5666554  6899999999999998899999999999999999999864333  789999


Q ss_pred             cEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCc
Q 044236          193 TDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFND  269 (747)
Q Consensus       193 ~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  269 (747)
                      +.|++++|.++.....+..+++|++|+|++|++++..+..   .++|+.|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            9999999999865556889999999999999998766543   4689999999999999888889999999999999999


Q ss_pred             CcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          270 LSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       270 l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      |+++++..|..+++|+.|+|++|+++ .+|..+.....|      ..+.+.+|...
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L------~~l~L~~Np~~  208 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL------PFAFLHGNPWL  208 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC------SEEECCSCCBC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC------CeEEeCCCCcc
Confidence            99999999999999999999999998 778776544433      44566666544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=1e-21  Score=224.25  Aligned_cols=265  Identities=24%  Similarity=0.272  Sum_probs=159.2

Q ss_pred             CCCCCCCCCCcccccCC---ccceEeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccCCCCCCEE
Q 044236           23 DIWGNYEGDLCNLTSTA---HVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVL   99 (747)
Q Consensus        23 ~~w~~~~~~~c~~~~~~---~~~v~c~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L   99 (747)
                      +.|... +++|.|.+..   .....|....++.|++.++.+...+..+. ..+..++++.|. +..+|.   .+++|++|
T Consensus        13 ~~W~~~-~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~-l~~lp~---~l~~L~~L   86 (622)
T 3g06_A           13 SAWRRA-APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN-LTSLPA---LPPELRTL   86 (622)
T ss_dssp             HHHHHT-CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC-CSCCCC---CCTTCCEE
T ss_pred             HHHHhc-CCcchhccccccCcccccccCCCCcEEEecCCCcCccChhhC-CCCcEEEecCCC-CCCCCC---cCCCCCEE
Confidence            346443 5788774210   01123333457778887766532221111 334455666553 445665   56788888


Q ss_pred             EeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCC
Q 044236          100 SLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLK  179 (747)
Q Consensus       100 ~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~  179 (747)
                      +|++|.|.+ +|.   .+++|++|+|++|.+++. |.   .+++|+.|+|++|.+++ +|..   +++|+.|+|++|+++
T Consensus        87 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A           87 EVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA  154 (622)
T ss_dssp             EECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             EcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence            888888854 665   677888888888887653 33   45667777777777765 4432   366777777777766


Q ss_pred             CCCchhh---c--------------CCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecC
Q 044236          180 GQFPSSI---C--------------RIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLS  242 (747)
Q Consensus       180 ~~~p~~~---~--------------~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls  242 (747)
                      + +|..+   .              .+++|+.|++++|.+++..+   .+++|+.|++++|.++ .+|..+++|+.|+|+
T Consensus       155 ~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls  229 (622)
T 3g06_A          155 S-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT-SLPALPSGLKELIVS  229 (622)
T ss_dssp             C-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCCCCTTCCEEECC
T ss_pred             C-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc-ccCCCCCCCCEEEcc
Confidence            4 22222   1              12666777777777765322   1345666666666665 344445667777777


Q ss_pred             CCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccc
Q 044236          243 RNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGN  322 (747)
Q Consensus       243 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n  322 (747)
                      +|.|++ +|   ..+++|+.|+|++|+|+.+++    .+++|+.|+|++|+|+ .+|..+..++.|      ..+.+++|
T Consensus       230 ~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L------~~L~L~~N  294 (622)
T 3g06_A          230 GNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSE------TTVNLEGN  294 (622)
T ss_dssp             SSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTT------CEEECCSC
T ss_pred             CCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhcccc------CEEEecCC
Confidence            777775 44   445677777887777776554    4577777888888777 667665544443      33445555


Q ss_pred             cCC
Q 044236          323 CLS  325 (747)
Q Consensus       323 ~~~  325 (747)
                      .++
T Consensus       295 ~l~  297 (622)
T 3g06_A          295 PLS  297 (622)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=1.3e-20  Score=218.39  Aligned_cols=133  Identities=20%  Similarity=0.170  Sum_probs=118.7

Q ss_pred             CCCCCCCCCccCCCccc-ccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEc
Q 044236           71 PIPNQTLSESFSIDSFV-TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM  149 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  149 (747)
                      .+..++|+.|.. ..++ .+|.+|++|++|+|++|.|.+..|++|++|++|++|+|++|+|++..|..|.+|++|++|+|
T Consensus        53 ~~~~LdLs~N~i-~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCC-CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            344578887754 4454 68999999999999999999888889999999999999999999888889999999999999


Q ss_pred             ccCCCCCCCcccccCCCCCCEEEccCCcCCC-CCchhhcCCccCcEEecccCcccc
Q 044236          150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG-QFPSSICRIATLTDIAMSNNELSG  204 (747)
Q Consensus       150 ~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~  204 (747)
                      ++|.+++..+..|+++++|+.|+|++|.+++ .+|..++++++|+.|++++|++++
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            9999999888889999999999999999976 468899999999999999987653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.1e-21  Score=194.93  Aligned_cols=187  Identities=18%  Similarity=0.238  Sum_probs=162.2

Q ss_pred             CCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCC-CCCCCcccccCCCCCCEEEccC-CcCCCCCchh
Q 044236          108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF-FDDNVPDWWDSLSNLTVLSLKS-NQLKGQFPSS  185 (747)
Q Consensus       108 ~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-~~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~  185 (747)
                      ..+|. +.  ++|++|+|++|.+++..+..|.++++|++|+|++|. ++...+..|.++++|+.|++++ |++++..+..
T Consensus        24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            34565 43  389999999999998888899999999999999997 8887777999999999999999 9999877789


Q ss_pred             hcCCccCcEEecccCccccCCCCCCCCCcCC---EEEccCC-CCCCCCCCC---CCCcc-eeecCCCcCcccCchhhcCC
Q 044236          186 ICRIATLTDIAMSNNELSGKLPDMSALTSLH---VLDLREN-KLDSGLPLM---PKGLV-TVLLSRNLFSGAIPQQFGEL  257 (747)
Q Consensus       186 ~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~---~L~L~~N-~l~~~~~~~---~~~L~-~L~ls~N~l~~~~p~~~~~l  257 (747)
                      |.++++|+.|++++|.+++ +|.+..+++|+   .|++++| .+++..+..   .++|+ .|++++|.++...+..|.. 
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-  178 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-  178 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred             hCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence            9999999999999999997 66688888888   9999999 887655432   46788 9999999999544445555 


Q ss_pred             cccCeeecccCc-CcccCCcccCCC-CccceeecccccCccccCc
Q 044236          258 AQLQHLDLSFND-LSGIPPSVLFSL-PNISYLHLASNMLSGTLPK  300 (747)
Q Consensus       258 ~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~l~~N~l~g~ip~  300 (747)
                      ++|+.|+|++|+ ++++++..|..+ ++|+.|++++|++++ +|.
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~  222 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPS  222 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CCh
Confidence            899999999995 999999999999 999999999999984 444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=8.7e-22  Score=222.04  Aligned_cols=209  Identities=25%  Similarity=0.336  Sum_probs=115.3

Q ss_pred             CCCCCCCCCCCcccccCCccce-EeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccCCCCCCEEE
Q 044236           22 LDIWGNYEGDLCNLTSTAHVSI-TCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLS  100 (747)
Q Consensus        22 l~~w~~~~~~~c~~~~~~~~~v-~c~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~  100 (747)
                      +..|... .++|......|.++ .|..+.++.|++.++.+         ..+|              ..+  +++|++|+
T Consensus        33 l~~W~~~-~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L---------~~lp--------------~~l--~~~L~~L~   86 (571)
T 3cvr_A           33 WDKWEKQ-ALPGENRNEAVSLLKECLINQFSELQLNRLNL---------SSLP--------------DNL--PPQITVLE   86 (571)
T ss_dssp             HHHHHTT-CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCC---------SCCC--------------SCC--CTTCSEEE
T ss_pred             HHHHhcc-CCccccccchhhhccccccCCccEEEeCCCCC---------CccC--------------HhH--cCCCCEEE
Confidence            3456443 56774322123456 56545666666665433         1122              222  25677777


Q ss_pred             eeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCC
Q 044236          101 LVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG  180 (747)
Q Consensus       101 L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~  180 (747)
                      |++|.|. .+|   ..+++|++|+|++|.|++ +|. |.+  +|++|+|++|.+++ +|.   .+++|+.|+|++|+|++
T Consensus        87 Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           87 ITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             CCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence            7777775 466   446777777777777765 555 554  77777777777766 454   56777777777777765


Q ss_pred             CCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCc-------ceeecCCCcCcccCchh
Q 044236          181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGL-------VTVLLSRNLFSGAIPQQ  253 (747)
Q Consensus       181 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L-------~~L~ls~N~l~~~~p~~  253 (747)
                       +|.   .+++|+.|++++|.|++ +|.+.  ++|+.|+|++|+|+ .+|..+.+|       +.|+|++|.|+ .+|..
T Consensus       155 -lp~---~l~~L~~L~Ls~N~L~~-lp~l~--~~L~~L~Ls~N~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          155 -LPE---LPTSLEVLSVRNNQLTF-LPELP--ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCS-SCCCCC--------CCEEEECCSSCCC-CCCGG
T ss_pred             -CCC---cCCCcCEEECCCCCCCC-cchhh--CCCCEEECcCCCCC-chhhHHHhhhcccccceEEecCCCcce-ecCHH
Confidence             454   45667777777777766 33343  66666666666665 333222233       44444444444 23333


Q ss_pred             hcCCcccCeeecccCcCcccCCcc
Q 044236          254 FGELAQLQHLDLSFNDLSGIPPSV  277 (747)
Q Consensus       254 ~~~l~~L~~L~Ls~N~l~~~~~~~  277 (747)
                      +..+++|+.|+|++|.|++.+|..
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHHH
Confidence            333444444444444444444333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=4.1e-21  Score=216.59  Aligned_cols=187  Identities=29%  Similarity=0.427  Sum_probs=160.9

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK  174 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~  174 (747)
                      +|+.|+|++|+|.+ +|..+.  ++|++|+|++|.|+ .+|   ..+++|++|+|++|.|++ +|. +.+  +|+.|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            89999999999987 887663  89999999999998 677   568999999999999998 777 665  99999999


Q ss_pred             CCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhh
Q 044236          175 SNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQF  254 (747)
Q Consensus       175 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~  254 (747)
                      +|+|++ +|.   .+++|+.|++++|.|++ +|.  .+++|+.|+|++|+|++ +|...++|+.|+|++|.|+ .+|. |
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N~L~-~lp~-~  198 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLE-SLPA-V  198 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-SCCC-C
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cchhhCCCCEEECcCCCCC-chhh-H
Confidence            999997 676   68999999999999997 555  67899999999999988 5555589999999999999 5666 6


Q ss_pred             cCCccc-------CeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCC
Q 044236          255 GELAQL-------QHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCG  305 (747)
Q Consensus       255 ~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~  305 (747)
                      ..  +|       +.|+|++|+|+.+|+. +..+++|+.|+|++|++++.+|..+..+
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             C----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            65  77       9999999999986654 5569999999999999999999876543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=6.3e-20  Score=203.04  Aligned_cols=142  Identities=30%  Similarity=0.445  Sum_probs=64.3

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|++|+|++|.+.+ +| .|+++++|++|++++|.+++ +|..+   .+|++|+|++|.+++ +| .++++++|+.|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            345555555555543 44 35555555555555555443 33322   244455555554444 33 3444444444444


Q ss_pred             cCCcCCC-------------------CCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCC
Q 044236          174 KSNQLKG-------------------QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPK  234 (747)
Q Consensus       174 ~~N~l~~-------------------~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~  234 (747)
                      ++|++++                   .+| .++++++|+.|++++|.+++. |.  .+++|+.|++++|++++ +|..+.
T Consensus       203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~-l~~~~~  277 (454)
T 1jl5_A          203 DNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTD-LPELPQ  277 (454)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSC-CCCCCT
T ss_pred             CCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccc-cCcccC
Confidence            4444443                   333 244455555555555554432 21  12344444444444443 333334


Q ss_pred             CcceeecCCCcCcc
Q 044236          235 GLVTVLLSRNLFSG  248 (747)
Q Consensus       235 ~L~~L~ls~N~l~~  248 (747)
                      +|+.|++++|.+++
T Consensus       278 ~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          278 SLTFLDVSENIFSG  291 (454)
T ss_dssp             TCCEEECCSSCCSE
T ss_pred             cCCEEECcCCccCc
Confidence            44455555555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=3.2e-21  Score=202.83  Aligned_cols=198  Identities=16%  Similarity=0.108  Sum_probs=164.8

Q ss_pred             CCCCCCCCccCCCcccccc--cCCCCCCEEEeeccCCCCCCC----hhccCCCCCCEEEcccCCCCCCCCccccCCCCCC
Q 044236           72 IPNQTLSESFSIDSFVTTL--TRLTTLRVLSLVSLGIWGPLP----DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQ  145 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l--~~l~~L~~L~L~~n~i~~~~p----~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  145 (747)
                      +..++++.+...+..|..+  ..+++|++|+|++|.+.+..|    ..+..+++|++|+|++|.+.+..|..|.++++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            4445566666666777777  999999999999999988766    4567899999999999999999999999999999


Q ss_pred             EEEcccCCCCCC--C--cccccCCCCCCEEEccCCcCCCCCch----hhcCCccCcEEecccCccccCCC-CCCCC---C
Q 044236          146 TLTMDTNFFDDN--V--PDWWDSLSNLTVLSLKSNQLKGQFPS----SICRIATLTDIAMSNNELSGKLP-DMSAL---T  213 (747)
Q Consensus       146 ~L~L~~N~~~~~--~--p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p-~~~~l---~  213 (747)
                      +|+|++|.+.+.  +  +..++.+++|++|+|++|+++. +|.    .+.++++|+.|+|++|.+++..| .+..+   +
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            999999998752  2  2334789999999999999973 333    35788999999999999999855 45555   7


Q ss_pred             cCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcc
Q 044236          214 SLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG  272 (747)
Q Consensus       214 ~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  272 (747)
                      +|++|+|++|+|+......+++|+.|+|++|.+++. |. +..+++|+.|+|++|.|+.
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            999999999999943333568999999999999975 43 6888999999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.8e-20  Score=184.87  Aligned_cols=162  Identities=24%  Similarity=0.266  Sum_probs=136.1

Q ss_pred             CCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEE
Q 044236           93 LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        93 l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      .++|++|+|++|++.+..+..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|+.|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            35899999999999887777889999999999999999988777889999999999999999988777889999999999


Q ss_pred             ccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCc
Q 044236          173 LKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIP  251 (747)
Q Consensus       173 l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p  251 (747)
                      +++|++++..+..|.++++|+.|++++|.+++..+. +..+++|+.|++++|.+.+..|    +|+.|+++.|.++|.+|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT----TTHHHHHHHHHCTTTBB
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC----CHHHHHHHHHhCCceee
Confidence            999999987777889999999999999999987765 6889999999999997765332    45555555555555555


Q ss_pred             hhhcCCc
Q 044236          252 QQFGELA  258 (747)
Q Consensus       252 ~~~~~l~  258 (747)
                      .+++.++
T Consensus       183 ~~~~~l~  189 (208)
T 2o6s_A          183 NSAGSVA  189 (208)
T ss_dssp             CTTSSBC
T ss_pred             ccCcccc
Confidence            5555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.9e-20  Score=196.62  Aligned_cols=178  Identities=25%  Similarity=0.327  Sum_probs=155.3

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..+++|++|+|++|.+.+. |. +.++++|++|+|++|.+.+. | .+..+++|++|+|++|.+++. + .+..+++|
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L  131 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNL  131 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTC
T ss_pred             hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCC
Confidence            478899999999999999764 44 99999999999999999764 4 699999999999999999874 4 39999999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC-CCCCcceeecCCCcCc
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFS  247 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~-~~~~L~~L~ls~N~l~  247 (747)
                      +.|++++|++++..+  +.++++|+.|++++|.+++..+ +..+++|+.|++++|++++..+. ..++|+.|+|++|.++
T Consensus       132 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC
Confidence            999999999986544  8899999999999999987554 88999999999999999865442 3578999999999999


Q ss_pred             ccCchhhcCCcccCeeecccCcCcccCCcc
Q 044236          248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSV  277 (747)
Q Consensus       248 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  277 (747)
                      +..|  +..+++|+.|+|++|.+++.+...
T Consensus       209 ~~~~--l~~l~~L~~L~l~~N~i~~~~~~~  236 (308)
T 1h6u_A          209 DVSP--LANTSNLFIVTLTNQTITNQPVFY  236 (308)
T ss_dssp             BCGG--GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred             cccc--ccCCCCCCEEEccCCeeecCCeee
Confidence            7653  899999999999999998866543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=4.7e-20  Score=181.94  Aligned_cols=178  Identities=25%  Similarity=0.275  Sum_probs=146.3

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      +.++++++++. .+|..+  .++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            46777778874 456544  468999999999999877778899999999999999999877777899999999999999


Q ss_pred             cCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhc
Q 044236          177 QLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFG  255 (747)
Q Consensus       177 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~  255 (747)
                      ++++..+..|.++++|+.|++++|.+++..+. +..+++|+.|+|++|+++                     +..+..|.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~---------------------~~~~~~~~  145 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK---------------------SVPDGVFD  145 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---------------------CCCTTTTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc---------------------eeCHHHhc
Confidence            99977777788999999999999999877665 677888888887777664                     34455678


Q ss_pred             CCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCC
Q 044236          256 ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCG  305 (747)
Q Consensus       256 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~  305 (747)
                      .+++|+.|+|++|.+.+       .+++|++|+++.|.++|.+|..++.+
T Consensus       146 ~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          146 RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             TCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             cCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            88999999999997654       45688999999999999999877544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=3.2e-22  Score=217.38  Aligned_cols=236  Identities=21%  Similarity=0.228  Sum_probs=163.2

Q ss_pred             cccccccCCCCCCEEEeeccCCCCCC----ChhccCCCCCCEEEcccC---CCCCCCCccc-------cCCCCCCEEEcc
Q 044236           85 SFVTTLTRLTTLRVLSLVSLGIWGPL----PDKIHRLSSLELLDMSSN---FLFGAIPSGI-------SRLVRLQTLTMD  150 (747)
Q Consensus        85 ~~~~~l~~l~~L~~L~L~~n~i~~~~----p~~~~~L~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~  150 (747)
                      .++..+..+++|+.|+|++|.|.+..    +..|.++++|++|+|++|   .+++.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            34556777788888888888876653    344667888888888875   4445566555       677888888888


Q ss_pred             cCCCCC----CCcccccCCCCCCEEEccCCcCCCCCchhh----cCC---------ccCcEEecccCccc-cCCC----C
Q 044236          151 TNFFDD----NVPDWWDSLSNLTVLSLKSNQLKGQFPSSI----CRI---------ATLTDIAMSNNELS-GKLP----D  208 (747)
Q Consensus       151 ~N~~~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~l---------~~L~~L~l~~N~l~-~~~p----~  208 (747)
                      +|.+++    .+|..+..+++|+.|+|++|.++...+..+    ..+         ++|+.|++++|.++ +.++    .
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            888877    467777888888888888888764433333    333         78888888888886 3344    2


Q ss_pred             CCCCCcCCEEEccCCCCCC-----CCC---CCCCCcceeecCCCcCc----ccCchhhcCCcccCeeecccCcCccc---
Q 044236          209 MSALTSLHVLDLRENKLDS-----GLP---LMPKGLVTVLLSRNLFS----GAIPQQFGELAQLQHLDLSFNDLSGI---  273 (747)
Q Consensus       209 ~~~l~~L~~L~L~~N~l~~-----~~~---~~~~~L~~L~ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~---  273 (747)
                      +..+++|+.|+|++|+++.     .++   ...++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.|++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            4567788888888888762     122   12457888888888886    56777888888888888888888765   


Q ss_pred             -CCccc--CCCCccceeecccccCcc----ccCcCC-CCCCCCCCCCccceeeeccccCCC
Q 044236          274 -PPSVL--FSLPNISYLHLASNMLSG----TLPKDL-SCGSKLDSISDKRVVKFGGNCLSY  326 (747)
Q Consensus       274 -~~~~l--~~l~~L~~L~l~~N~l~g----~ip~~~-~~~~~l~~~~~~~~~~~~~n~~~~  326 (747)
                       ++..+  +.+++|+.|+|++|.+++    .+|..+ ..++.      ...+.+++|.++.
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~------L~~L~l~~N~l~~  317 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD------LLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT------CCEEECTTSBSCT
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC------ceEEEccCCcCCc
Confidence             44455  347888888888888876    466554 22233      3445566666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=3.9e-19  Score=202.91  Aligned_cols=216  Identities=25%  Similarity=0.303  Sum_probs=157.2

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  151 (747)
                      +..++++.+ .+..+|..+.  ++|++|+|++|.|. .+|.   .+++|++|+|++|.+++ +|.   .+++|++|+|++
T Consensus        42 l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           42 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS  110 (622)
T ss_dssp             CCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred             CcEEEecCC-CcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence            334455543 3446777665  79999999999997 4676   68999999999999874 665   789999999999


Q ss_pred             CCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCC---CCC--------------Cc
Q 044236          152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM---SAL--------------TS  214 (747)
Q Consensus       152 N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~l--------------~~  214 (747)
                      |.+++ +|.   .+++|+.|++++|++++ +|..   +++|+.|++++|.+++..+.+   ..|              ++
T Consensus       111 N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~  182 (622)
T 3g06_A          111 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSG  182 (622)
T ss_dssp             CCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             CcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCC
Confidence            99987 454   67899999999999986 5654   488999999999998643322   222              56


Q ss_pred             CCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccC
Q 044236          215 LHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML  294 (747)
Q Consensus       215 L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  294 (747)
                      |+.|+|++|+|++ +|..+.+|..|++++|.++. +|.   .+++|+.|+|++|+|++++    ..+++|+.|+|++|.|
T Consensus       183 L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L  253 (622)
T 3g06_A          183 LQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRL  253 (622)
T ss_dssp             CCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred             CcEEECCCCCCCC-CCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCC
Confidence            6666666666654 44445667777777777663 343   2367889999999998865    4568899999999998


Q ss_pred             ccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          295 SGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       295 ~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      + .+|..+   +      ....+.+++|.+.
T Consensus       254 ~-~lp~~~---~------~L~~L~Ls~N~L~  274 (622)
T 3g06_A          254 T-SLPMLP---S------GLLSLSVYRNQLT  274 (622)
T ss_dssp             S-CCCCCC---T------TCCEEECCSSCCC
T ss_pred             C-cCCccc---c------cCcEEeCCCCCCC
Confidence            8 566522   2      2344566666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=4.4e-22  Score=216.35  Aligned_cols=229  Identities=20%  Similarity=0.264  Sum_probs=184.3

Q ss_pred             CCCCCCCCCccCCCc----ccccccCCCCCCEEEeecc---CCCCCCChhc-------cCCCCCCEEEcccCCCCC----
Q 044236           71 PIPNQTLSESFSIDS----FVTTLTRLTTLRVLSLVSL---GIWGPLPDKI-------HRLSSLELLDMSSNFLFG----  132 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~----~~~~l~~l~~L~~L~L~~n---~i~~~~p~~~-------~~L~~L~~L~Ls~N~l~~----  132 (747)
                      .+..++|+.+...+.    ++..+..+++|++|+|++|   .+.+.+|..+       .++++|++|+|++|.+.+    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            456677777644333    4455889999999999996   4556677665       799999999999999987    


Q ss_pred             CCCccccCCCCCCEEEcccCCCCCCCccccc----CC---------CCCCEEEccCCcCC-CCCc---hhhcCCccCcEE
Q 044236          133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWD----SL---------SNLTVLSLKSNQLK-GQFP---SSICRIATLTDI  195 (747)
Q Consensus       133 ~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~----~l---------~~L~~L~l~~N~l~-~~~p---~~~~~l~~L~~L  195 (747)
                      .+|..+..+++|++|+|++|.++...+..+.    .+         ++|+.|+|++|+++ +.+|   ..+..+++|+.|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence            5888999999999999999999754444443    34         89999999999998 4555   577789999999


Q ss_pred             ecccCccc--c---CCC-CCCCCCcCCEEEccCCCCC----CCCCC---CCCCcceeecCCCcCccc----Cchhh--cC
Q 044236          196 AMSNNELS--G---KLP-DMSALTSLHVLDLRENKLD----SGLPL---MPKGLVTVLLSRNLFSGA----IPQQF--GE  256 (747)
Q Consensus       196 ~l~~N~l~--~---~~p-~~~~l~~L~~L~L~~N~l~----~~~~~---~~~~L~~L~ls~N~l~~~----~p~~~--~~  256 (747)
                      ++++|.++  |   ..+ .+..+++|+.|+|++|.++    ..+|.   ..++|+.|+|++|.|++.    +|..+  +.
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            99999998  3   345 6788999999999999985    33332   246799999999999976    56777  44


Q ss_pred             CcccCeeecccCcCcc----cCCccc-CCCCccceeecccccCccccC
Q 044236          257 LAQLQHLDLSFNDLSG----IPPSVL-FSLPNISYLHLASNMLSGTLP  299 (747)
Q Consensus       257 l~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~g~ip  299 (747)
                      +++|+.|+|++|.|++    .+|..+ .++++|++|++++|++++..|
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            9999999999999998    355555 678999999999999986543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.1e-19  Score=194.66  Aligned_cols=196  Identities=16%  Similarity=0.091  Sum_probs=159.0

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCC-ccccCCCCCCE-EEcccCCCCCCCcccccCCCCCCEE
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIP-SGISRLVRLQT-LTMDTNFFDDNVPDWWDSLSNLTVL  171 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~~~~~~p~~~~~l~~L~~L  171 (747)
                      ++|+.|+|++|+|+...+.+|.+|++|++|+|++|.+.+.+| ..|.++++|.. +.++.|+++...|..|..+++|+.|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            578999999999987666789999999999999999877666 46899999775 6677899999889999999999999


Q ss_pred             EccCCcCCCCCchhhcCCccCcEEeccc-CccccCCC-CCCCC-CcCCEEEccCCCCCCCCCCC--CCCcceeecCC-Cc
Q 044236          172 SLKSNQLKGQFPSSICRIATLTDIAMSN-NELSGKLP-DMSAL-TSLHVLDLRENKLDSGLPLM--PKGLVTVLLSR-NL  245 (747)
Q Consensus       172 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p-~~~~l-~~L~~L~L~~N~l~~~~~~~--~~~L~~L~ls~-N~  245 (747)
                      ++++|++++..+..+....++..|++.+ |++....+ .+..+ ..++.|+|++|+|+...+..  ..+|+++++++ |.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            9999999987777888888899999976 55655444 35555 46889999999998644433  24688899975 56


Q ss_pred             CcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeec
Q 044236          246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHL  289 (747)
Q Consensus       246 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  289 (747)
                      ++...+..|..+++|+.|||++|+|+.+++..|.+++.|+.+++
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~  233 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  233 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence            66554567899999999999999999999887776666655544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=2.1e-19  Score=187.01  Aligned_cols=174  Identities=26%  Similarity=0.358  Sum_probs=136.5

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+++..|  +.++++|++|+|++|.+++ +| .+..+++|
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L  114 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL  114 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred             chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence            35678889999999998865 44 48888999999999999876554  8889999999999998876 33 48888999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcc
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSG  248 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~  248 (747)
                      +.|++++|++++.  ..+.++++|+.|++++|.+++. +.+..+++|+.|+|++|++++                     
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~---------------------  170 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD---------------------  170 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC---------------------
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc---------------------
Confidence            9999999988863  5678888888888888888765 667777888888777776653                     


Q ss_pred             cCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCcc
Q 044236          249 AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSG  296 (747)
Q Consensus       249 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g  296 (747)
                      ..|  +..+++|+.|+|++|.|++++  .+..+++|+.|++++|+++.
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             chh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccC
Confidence            223  677788888888888887763  26778888888888887764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.80  E-value=5.2e-21  Score=223.64  Aligned_cols=224  Identities=17%  Similarity=0.159  Sum_probs=118.2

Q ss_pred             ChhHHHHHHHHHhcCCCC--CCCCCCCCCCCCCcccccCCccceEeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCC
Q 044236            2 QTSQTQVLLQLRKHLEYP--SPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSE   79 (747)
Q Consensus         2 ~~~~~~~l~~~k~~~~~~--~~l~~w~~~~~~~c~~~~~~~~~v~c~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~   79 (747)
                      ..+++++|+++...+..+  ..-+.|.......+.|.     +.++...+++.|.+.++.....    ....+..++|+.
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~~~~~~l~L~~n~~~~~----~~~~l~~l~Ls~  200 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTAT-----NSAVSTPLTPKIELFANGKDEA----NQALLQHKKLSQ  200 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCCCCccccCC-----CceecCCccceEEeeCCCCCcc----hhhHhhcCccCc
Confidence            346778899988766321  12234543334445554     4666666778777765433100    000011111111


Q ss_pred             ccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCc
Q 044236           80 SFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVP  159 (747)
Q Consensus        80 ~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p  159 (747)
                      +              ++..+++..|.+. ..|+.|..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|
T Consensus       201 ~--------------~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp  263 (727)
T 4b8c_D          201 Y--------------SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELP  263 (727)
T ss_dssp             ------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCC
T ss_pred             c--------------cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccC
Confidence            0              1333444555553 56788899999999999999986 77777889999999999999998 688


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCC----C
Q 044236          160 DWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPK----G  235 (747)
Q Consensus       160 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~----~  235 (747)
                      ..|++|++|+.|+|++|+|+ .+|..|++|++|+.|+|++|.|+..++.|+.|++|+.|+|++|.|++.+|....    .
T Consensus       264 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~  342 (727)
T 4b8c_D          264 AEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT  342 (727)
T ss_dssp             GGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH
T ss_pred             hhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh
Confidence            88999999999999999998 779999999999999999999975544688888898888888887765543221    1


Q ss_pred             cceeecCCCcCcccCch
Q 044236          236 LVTVLLSRNLFSGAIPQ  252 (747)
Q Consensus       236 L~~L~ls~N~l~~~~p~  252 (747)
                      +..++|++|.++|.+|.
T Consensus       343 ~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          343 GLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             HHHHHHHHCCCCCCCCC
T ss_pred             hhHHhhccCcccCcCcc
Confidence            12345566666655554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=7.6e-21  Score=204.57  Aligned_cols=214  Identities=21%  Similarity=0.247  Sum_probs=166.5

Q ss_pred             CCcccccccCCCCCCEEEeeccCCCCCCC----hhccCCC-CCCEEEcccCCCCCCCCccccCC-----CCCCEEEcccC
Q 044236           83 IDSFVTTLTRLTTLRVLSLVSLGIWGPLP----DKIHRLS-SLELLDMSSNFLFGAIPSGISRL-----VRLQTLTMDTN  152 (747)
Q Consensus        83 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~p----~~~~~L~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N  152 (747)
                      .+.+|..+....+|++|+|++|.|.+..+    +.|.+++ +|++|+|++|.+.+..+..|..+     ++|++|+|++|
T Consensus        11 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           11 SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred             hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence            34566666677779999999999977666    7788888 89999999999988888877775     89999999999


Q ss_pred             CCCCCCccccc----CC-CCCCEEEccCCcCCCCCchhhc----C-CccCcEEecccCccccCCCC-----CCCCC-cCC
Q 044236          153 FFDDNVPDWWD----SL-SNLTVLSLKSNQLKGQFPSSIC----R-IATLTDIAMSNNELSGKLPD-----MSALT-SLH  216 (747)
Q Consensus       153 ~~~~~~p~~~~----~l-~~L~~L~l~~N~l~~~~p~~~~----~-l~~L~~L~l~~N~l~~~~p~-----~~~l~-~L~  216 (747)
                      .+++..+..+.    .+ ++|+.|+|++|++++..+..+.    . .++|+.|++++|.++.....     +..++ +|+
T Consensus        91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  170 (362)
T 3goz_A           91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN  170 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence            99887776544    44 8999999999999877666554    3 36899999999999854321     33444 899


Q ss_pred             EEEccCCCCCCCCCC--------CCCCcceeecCCCcCccc----CchhhcC-CcccCeeecccCcCcccCC----cccC
Q 044236          217 VLDLRENKLDSGLPL--------MPKGLVTVLLSRNLFSGA----IPQQFGE-LAQLQHLDLSFNDLSGIPP----SVLF  279 (747)
Q Consensus       217 ~L~L~~N~l~~~~~~--------~~~~L~~L~ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~~----~~l~  279 (747)
                      .|+|++|++++..+.        .+.+|++|+|++|.|++.    ++..+.. .++|+.|+|++|.|++..+    ..+.
T Consensus       171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~  250 (362)
T 3goz_A          171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD  250 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred             EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence            999999998765431        125899999999999873    4555655 4589999999999988765    3456


Q ss_pred             CCCccceeecccccCcc
Q 044236          280 SLPNISYLHLASNMLSG  296 (747)
Q Consensus       280 ~l~~L~~L~l~~N~l~g  296 (747)
                      .+++|+.|+|++|.+.+
T Consensus       251 ~l~~L~~L~L~~n~l~~  267 (362)
T 3goz_A          251 SLKHLQTVYLDYDIVKN  267 (362)
T ss_dssp             TTTTCSEEEEEHHHHTT
T ss_pred             cCCCccEEEeccCCccc
Confidence            78899999999998553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=9.2e-21  Score=203.93  Aligned_cols=212  Identities=17%  Similarity=0.266  Sum_probs=171.7

Q ss_pred             ccccCCC-CCCEEEeeccCCCCCCChhccCC-----CCCCEEEcccCCCCCCCCccccC----C-CCCCEEEcccCCCCC
Q 044236           88 TTLTRLT-TLRVLSLVSLGIWGPLPDKIHRL-----SSLELLDMSSNFLFGAIPSGISR----L-VRLQTLTMDTNFFDD  156 (747)
Q Consensus        88 ~~l~~l~-~L~~L~L~~n~i~~~~p~~~~~L-----~~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~L~~N~~~~  156 (747)
                      ..+..++ +|++|+|++|.|.+..+..|..+     ++|++|+|++|.+++..+..+..    + ++|++|+|++|.+++
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            5778888 99999999999988888888775     99999999999998887775544    4 899999999999988


Q ss_pred             CCccccc----C-CCCCCEEEccCCcCCCCCc----hhhcCCc-cCcEEecccCccccCCCC-----CCCC-CcCCEEEc
Q 044236          157 NVPDWWD----S-LSNLTVLSLKSNQLKGQFP----SSICRIA-TLTDIAMSNNELSGKLPD-----MSAL-TSLHVLDL  220 (747)
Q Consensus       157 ~~p~~~~----~-l~~L~~L~l~~N~l~~~~p----~~~~~l~-~L~~L~l~~N~l~~~~p~-----~~~l-~~L~~L~L  220 (747)
                      ..+..+.    . .++|+.|+|++|+++...+    ..+..++ +|+.|++++|.+++..+.     +..+ ++|+.|+|
T Consensus       124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L  203 (362)
T 3goz_A          124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL  203 (362)
T ss_dssp             SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence            7766543    4 3699999999999986544    4455665 999999999999876652     3445 59999999


Q ss_pred             cCCCCCCC----CCC----CCCCcceeecCCCcCcccCc----hhhcCCcccCeeecccCcCcccCCc-------ccCCC
Q 044236          221 RENKLDSG----LPL----MPKGLVTVLLSRNLFSGAIP----QQFGELAQLQHLDLSFNDLSGIPPS-------VLFSL  281 (747)
Q Consensus       221 ~~N~l~~~----~~~----~~~~L~~L~ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~~l  281 (747)
                      ++|.++..    ++.    .+++|++|+|++|.+++..+    ..+..+++|+.|+|++|.+.++.+.       .+..+
T Consensus       204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l  283 (362)
T 3goz_A          204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI  283 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred             CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence            99999762    121    23589999999999997655    4457789999999999997665543       57788


Q ss_pred             CccceeecccccCccccC
Q 044236          282 PNISYLHLASNMLSGTLP  299 (747)
Q Consensus       282 ~~L~~L~l~~N~l~g~ip  299 (747)
                      ++|+.|++++|++.+..|
T Consensus       284 ~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          284 QKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CEEEEECTTSCBCCGGGC
T ss_pred             CceEEEecCCCcCCCcch
Confidence            999999999999876644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=7.5e-21  Score=202.42  Aligned_cols=198  Identities=19%  Similarity=0.208  Sum_probs=107.1

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCC-CCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEE
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGA-IPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      .+|+.|++++|.+.+..|. +.++++|++|+|++|.+++. +|..+..+++|++|+|++|.+++..|..++.+++|+.|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5566666666665554443 34556666666666655544 555555666666666666665555555555666666666


Q ss_pred             ccCC-cCCC-CCchhhcCCccCcEEecccC-ccccC-CC-CCCCCC-cCCEEEccCC--CCC-CCCCC---CCCCcceee
Q 044236          173 LKSN-QLKG-QFPSSICRIATLTDIAMSNN-ELSGK-LP-DMSALT-SLHVLDLREN--KLD-SGLPL---MPKGLVTVL  240 (747)
Q Consensus       173 l~~N-~l~~-~~p~~~~~l~~L~~L~l~~N-~l~~~-~p-~~~~l~-~L~~L~L~~N--~l~-~~~~~---~~~~L~~L~  240 (747)
                      +++| .+++ .++..+.++++|+.|++++| .+++. ++ .+..++ +|+.|++++|  .++ +.++.   ..++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            6666 4443 24444555666666666666 55532 22 234455 5666666665  333 12221   134566666


Q ss_pred             cCCCc-CcccCchhhcCCcccCeeecccCc-CcccCCcccCCCCccceeecccc
Q 044236          241 LSRNL-FSGAIPQQFGELAQLQHLDLSFND-LSGIPPSVLFSLPNISYLHLASN  292 (747)
Q Consensus       241 ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~l~~N  292 (747)
                      +++|. +++..+..+..+++|+.|+|++|. +.......+..+++|+.|++++|
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            66665 555555556666666666666663 22111123455666666666655

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.79  E-value=3.8e-20  Score=188.89  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=103.8

Q ss_pred             CCccccccCCCCeeEEEEEe-CCCcE--EEEEEeeccch------------------------hcHHHHHHHHHHHhcCC
Q 044236          442 FDSLSFMGEGSRGKLYKGRL-ENGTY--VAIRSLTFLKK------------------------YSIQNLKVRLDFLSKLQ  494 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~-~~g~~--vAvK~l~~~~~------------------------~~~~~~~~E~~~l~~l~  494 (747)
                      |++.+.||+|+||.||+|+. .+|+.  ||||+++....                        .....+.+|+.+|.+++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999996 78989  99998753211                        11236788999999998


Q ss_pred             CCCc--ceeeeeeeccCCCCCCCCceEEEEEeccCC-C----CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhh-cC
Q 044236          495 HPHL--VSLLGHCIESGSQDDSNTNKVFLVYEYIPN-G----SYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH-SS  566 (747)
Q Consensus       495 H~nI--v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~-g----sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~  566 (747)
                      |++|  ...+++  .          ..+|||||+.+ |    +|.++...      .++.....++.|++.||.||| + 
T Consensus       129 ~~~i~~p~~~~~--~----------~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~-  189 (258)
T 1zth_A          129 EAGVSVPQPYTY--M----------KNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQE-  189 (258)
T ss_dssp             HTTCCCCCEEEE--E----------TTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHT-
T ss_pred             hCCCCCCeEEEc--C----------CCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHH-
Confidence            8864  333322  1          35899999942 5    44443321      224456789999999999999 8 


Q ss_pred             CCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       567 ~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                        .+|+||||||+|||++.  .++|+|||+|...
T Consensus       190 --~givHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          190 --AELVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             --SCEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             --CCEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence              79999999999999998  9999999999654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.5e-18  Score=173.70  Aligned_cols=133  Identities=27%  Similarity=0.268  Sum_probs=122.4

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|++|+|++|.|.+..|..|.++++|++|+|++|.+....+..|.++++|++|+|++|.+++..+..|..+++|+.|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            78999999999999998999999999999999999998777788899999999999999999988888999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~  227 (747)
                      ++|+|+ .+|..+.++++|+.|++++|+|++..+. +..+++|+.|+|++|.+..
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            999999 7899999999999999999999977664 7888999999999888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=3.9e-19  Score=191.01  Aligned_cols=175  Identities=26%  Similarity=0.272  Sum_probs=107.2

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCcccc-CCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGIS-RLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~  175 (747)
                      +++++++|++.. +|..+.  ..|+.|+|++|.|++..+..|. ++++|++|+|++|.+++..+..|.++++|+.|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456666666643 555443  3466777777777666666665 677777777777777666666667777777777777


Q ss_pred             CcCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhh
Q 044236          176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQF  254 (747)
Q Consensus       176 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~  254 (747)
                      |+|++..+..|.++++|+.|+|++|.+++..| .|..+++|+.|+|++|+|++                     ..+..|
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------l~~~~~  156 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR---------------------FPVELI  156 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS---------------------CCGGGT
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe---------------------eCHHHh
Confidence            77766555666667777777777777766554 35666666666666666543                     111222


Q ss_pred             ---cCCcccCeeecccCcCcccCCcccCCCCc--cceeecccccCc
Q 044236          255 ---GELAQLQHLDLSFNDLSGIPPSVLFSLPN--ISYLHLASNMLS  295 (747)
Q Consensus       255 ---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~  295 (747)
                         ..+++|+.|+|++|+|+++++..+..++.  |+.|+|++|++.
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence               34556666666666666666555555554  355666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=6e-19  Score=201.13  Aligned_cols=179  Identities=24%  Similarity=0.312  Sum_probs=133.1

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..|.+|+.|+|++|.|.. +| .|..|++|+.|+|++|.+.+..|  +..|++|+.|+|++|.+.+ +| .+..+++|
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L  111 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL  111 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred             chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence            35778889999999998854 44 58889999999999999887655  8899999999999999876 33 68889999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC-CCCCcceeecCCCcCc
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFS  247 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~-~~~~L~~L~ls~N~l~  247 (747)
                      +.|+|++|++++.  ..+.++++|+.|+|++|.+++. +.+..+++|+.|+|++|.|.+..|. .+++|+.|+|++|.|+
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCC
Confidence            9999999998863  4688889999999999988865 6778888888888888887754431 1345555666666555


Q ss_pred             ccCchhhcCCcccCeeecccCcCcccCCccc
Q 044236          248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSVL  278 (747)
Q Consensus       248 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l  278 (747)
                      +.  ..|..+++|+.|+|++|.+++.+...+
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~  217 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECLNKPINHQ  217 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred             CC--hHHccCCCCCEEEccCCcCcCCccccc
Confidence            43  245556666666666666655544433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=1.2e-20  Score=200.84  Aligned_cols=258  Identities=16%  Similarity=0.163  Sum_probs=192.3

Q ss_pred             ceEeCCCcEEEEecCCCCCCCCC-CCCCCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCC-CChhccCCCC
Q 044236           42 SITCQDNSVTGLKIMGDKPVKEN-TAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGP-LPDKIHRLSS  119 (747)
Q Consensus        42 ~v~c~~~~v~~l~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~-~p~~~~~L~~  119 (747)
                      ++.|+...++.+++.+....... ..+....+..++++.+...+. +..+.++++|++|+|++|.+.+. +|..+.++++
T Consensus        41 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           41 RLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             HHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             HHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcccccc-chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence            45555445667777664331000 000002344455555543333 33467899999999999999876 8889999999


Q ss_pred             CCEEEcccCCCCCCCCccccCCCCCCEEEcccC-CCCC-CCcccccCCCCCCEEEccCC-cCCCC-CchhhcCCc-cCcE
Q 044236          120 LELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN-FFDD-NVPDWWDSLSNLTVLSLKSN-QLKGQ-FPSSICRIA-TLTD  194 (747)
Q Consensus       120 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~~~~-~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~-~L~~  194 (747)
                      |++|+|++|.+++..|..++.+++|++|+|++| .+++ .++..+..+++|+.|++++| .+++. ++..+.+++ +|+.
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~  199 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  199 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence            999999999999889999999999999999999 6776 36777899999999999999 99864 678889999 9999


Q ss_pred             EecccC--ccc-cCCC-CCCCCCcCCEEEccCCC-CCCCCCC---CCCCcceeecCCCc-CcccCchhhcCCcccCeeec
Q 044236          195 IAMSNN--ELS-GKLP-DMSALTSLHVLDLRENK-LDSGLPL---MPKGLVTVLLSRNL-FSGAIPQQFGELAQLQHLDL  265 (747)
Q Consensus       195 L~l~~N--~l~-~~~p-~~~~l~~L~~L~L~~N~-l~~~~~~---~~~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~L  265 (747)
                      |++++|  .++ +.++ .+..+++|+.|++++|. ++...+.   ..++|+.|++++|. +.......+..+++|+.|+|
T Consensus       200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  279 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  279 (336)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence            999999  454 3344 35678999999999999 6654332   24789999999995 33222236888999999999


Q ss_pred             ccCcCcccCCcccCCC-CccceeecccccCccccCcCCCC
Q 044236          266 SFNDLSGIPPSVLFSL-PNISYLHLASNMLSGTLPKDLSC  304 (747)
Q Consensus       266 s~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~g~ip~~~~~  304 (747)
                      ++| +   +...+..+ .+|..|+++.|.+++..|..+.+
T Consensus       280 ~~~-i---~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          280 FGI-V---PDGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTS-S---CTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             cCc-c---CHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            999 3   33334444 34778889999999999887653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2.2e-18  Score=172.62  Aligned_cols=105  Identities=25%  Similarity=0.295  Sum_probs=73.7

Q ss_pred             CCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC
Q 044236           96 LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        96 L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~  175 (747)
                      .+.++.+++++ +.+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|+.|+|++
T Consensus        21 ~~~v~c~~~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            34567777776 45666543  7788888888888877777788888888888888887766566677777777777777


Q ss_pred             CcCCCCCchhhcCCccCcEEecccCccc
Q 044236          176 NQLKGQFPSSICRIATLTDIAMSNNELS  203 (747)
Q Consensus       176 N~l~~~~p~~~~~l~~L~~L~l~~N~l~  203 (747)
                      |+|++..+..|..+++|+.|+|++|.|+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc
Confidence            7777655555566666666655555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=1.7e-18  Score=172.28  Aligned_cols=124  Identities=17%  Similarity=0.221  Sum_probs=81.7

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCC-ccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIP-SGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~  175 (747)
                      +.+++++|.+. .+|..+.  ..++.|+|++|.+++..| ..|.++++|++|+|++|.+++..+..|.++++|+.|+|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46778888874 3666553  346788888888877654 3467777788888877777776666777777777777777


Q ss_pred             CcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCC
Q 044236          176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLREN  223 (747)
Q Consensus       176 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N  223 (747)
                      |++++..|..|.++++|+.|+|++|.+++..|. +..+++|+.|+|++|
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence            777766666666666666666666666554432 344444444444333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.6e-18  Score=185.43  Aligned_cols=238  Identities=15%  Similarity=0.121  Sum_probs=181.8

Q ss_pred             ceEeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccc-cccCCCCCCEEEeeccCCCCCCC-hhccCCCC
Q 044236           42 SITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVT-TLTRLTTLRVLSLVSLGIWGPLP-DKIHRLSS  119 (747)
Q Consensus        42 ~v~c~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n~i~~~~p-~~~~~L~~  119 (747)
                      .|.|.+..++.+.-          .+ ...+..++|+.| .+..+|. .|.+|++|++|+|++|.+.+.+| ..|.+|++
T Consensus        13 ~v~C~~~~Lt~iP~----------~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X           13 VFLCQESKVTEIPS----------DL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             EEEEESTTCCSCCT----------TC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             EEEecCCCCCccCc----------Cc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            58887655553321          11 023445666655 3456765 68999999999999999987766 46899998


Q ss_pred             CCE-EEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC-CcCCCCCchhhcCCc-cCcEEe
Q 044236          120 LEL-LDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS-NQLKGQFPSSICRIA-TLTDIA  196 (747)
Q Consensus       120 L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~-~L~~L~  196 (747)
                      |+. ++++.|+++...|..|.++++|++|++++|.+....+..+....++..|++.+ |++....+..|..+. .++.|+
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~  160 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  160 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence            775 77788999998999999999999999999999988777888888899999965 667765666777774 689999


Q ss_pred             cccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC-C---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcc
Q 044236          197 MSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL-M---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSG  272 (747)
Q Consensus       197 l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~-~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  272 (747)
                      +++|.|+...+......+|+.|++++|+..+.+|. .   .++|++|+|++|+|+...+..|.++++|+.+++  +++..
T Consensus       161 L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~  238 (350)
T 4ay9_X          161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKK  238 (350)
T ss_dssp             CCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCC
T ss_pred             cccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCc
Confidence            99999998777777788999999986544445553 2   468999999999999766666766666655543  45666


Q ss_pred             cCCcccCCCCccceeecccccCc
Q 044236          273 IPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       273 ~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      +|+  +.++++|+.+++.++...
T Consensus       239 lP~--l~~l~~L~~l~l~~~~~c  259 (350)
T 4ay9_X          239 LPT--LEKLVALMEASLTYPSHC  259 (350)
T ss_dssp             CCC--TTTCCSCCEEECSCHHHH
T ss_pred             CCC--chhCcChhhCcCCCCccc
Confidence            653  788999999999876543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=2.9e-18  Score=170.53  Aligned_cols=152  Identities=20%  Similarity=0.291  Sum_probs=88.7

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      +.++++++++. .+|..+.  ++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|+.|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45666666663 3555443  46666666666666655556666666666666666666655666666666666666666


Q ss_pred             cCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcC
Q 044236          177 QLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGE  256 (747)
Q Consensus       177 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~  256 (747)
                      +|+...+..|.++++|+.|+|++|.+++                                            ..|..|..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~--------------------------------------------~~~~~~~~  126 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINC--------------------------------------------LRVDAFQD  126 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------------------------------CCTTTTTT
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCE--------------------------------------------eCHHHcCC
Confidence            6554333334444444444444444433                                            33445555


Q ss_pred             CcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       257 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      +++|+.|+|++|+|+++++..|..+++|+.|+|++|++.
T Consensus       127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            666666666666666666666666666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=3.3e-19  Score=203.25  Aligned_cols=191  Identities=25%  Similarity=0.313  Sum_probs=164.4

Q ss_pred             CCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEE
Q 044236           93 LTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        93 l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      +..+..+.|..+.+...++  +..|++|+.|+|++|.+.. +| .|..|++|+.|+|++|.+++..|  +..+++|+.|+
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            3345555667777765544  5688999999999999865 44 58999999999999999998655  99999999999


Q ss_pred             ccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC--CCCCcceeecCCCcCcccC
Q 044236          173 LKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL--MPKGLVTVLLSRNLFSGAI  250 (747)
Q Consensus       173 l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~--~~~~L~~L~ls~N~l~~~~  250 (747)
                      |++|++++ + ..+..+++|+.|+|++|.+++ ++.+..+++|+.|+|++|.|++. +.  .+++|+.|+|++|.|++..
T Consensus        94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence            99999986 3 379999999999999999986 57789999999999999999875 32  3578999999999999877


Q ss_pred             chhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccc
Q 044236          251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       251 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      |  +..+++|+.|+|++|+|++++  .+..+++|+.|+|++|++++.
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECC
T ss_pred             h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCC
Confidence            7  999999999999999999973  589999999999999999865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.6e-18  Score=169.36  Aligned_cols=133  Identities=16%  Similarity=0.210  Sum_probs=98.7

Q ss_pred             ccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCC
Q 044236           90 LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT  169 (747)
Q Consensus        90 l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~  169 (747)
                      ...+++|+.|++++|.|. .+| .+..+++|++|+|++|.++  .+..+..+++|++|+|++|.+++..|..|+.+++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            467788888888888886 566 6888888888888888653  344788888888888888888877777888888888


Q ss_pred             EEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCC
Q 044236          170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLD  226 (747)
Q Consensus       170 ~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~  226 (747)
                      .|++++|++++..|..+.++++|+.|++++|.+.+.+|.+..+++|+.|++++|+++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc
Confidence            888888888877777777777777777777763334445555555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=3.9e-18  Score=169.60  Aligned_cols=133  Identities=19%  Similarity=0.241  Sum_probs=124.5

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|+.|+|++|.|.+..|..|.++++|+.|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|+.|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            57999999999999888889999999999999999999999999999999999999999999877778899999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLD  226 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~  226 (747)
                      ++|++++..|..|.++++|+.|+|++|.+++..+. +..+++|+.|+|++|.+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99999999999999999999999999999988775 788999999999998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=2.8e-18  Score=184.36  Aligned_cols=157  Identities=23%  Similarity=0.202  Sum_probs=134.4

Q ss_pred             CCCEEEeeccCCCCCCChhcc-CCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           95 TLRVLSLVSLGIWGPLPDKIH-RLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~-~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      .|+.|+|++|+|.+..+..|. ++++|++|+|++|.|++..|..|.++++|++|+|++|.+++..+..|..+++|+.|+|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            589999999999988888887 9999999999999999988899999999999999999999988889999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCCCC----CCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCccc
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM----SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGA  249 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~----~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~  249 (747)
                      ++|+|++..|..|.++++|+.|+|++|.|++..+.+    ..+++|+.|+|++|+|+                     +.
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------------~l  178 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK---------------------KL  178 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC---------------------CC
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC---------------------cc
Confidence            999999988999999999999999999999765543    45777777777777665                     33


Q ss_pred             CchhhcCCcc--cCeeecccCcCcc
Q 044236          250 IPQQFGELAQ--LQHLDLSFNDLSG  272 (747)
Q Consensus       250 ~p~~~~~l~~--L~~L~Ls~N~l~~  272 (747)
                      .+..|..++.  |+.|+|++|.+..
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CHHHhhhccHhhcceEEecCCCccC
Confidence            4456666665  4778888887754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.1e-17  Score=173.82  Aligned_cols=158  Identities=22%  Similarity=0.319  Sum_probs=137.0

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..+++|++|+|++|.+.+..|  +.++++|++|+|++|.+++ +| .+..+++|++|+|++|.+++.  +.+..+++|
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L  136 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL  136 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred             hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCC
Confidence            47889999999999999987544  9999999999999999976 33 499999999999999999874  578999999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcc
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSG  248 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~  248 (747)
                      +.|++++|++++.  ..+.++++|+.|++++|.+++..+ +..+++|+.|+|++|.+++                     
T Consensus       137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~---------------------  192 (291)
T 1h6t_A          137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD---------------------  192 (291)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB---------------------
T ss_pred             CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC---------------------
Confidence            9999999999975  688999999999999999998766 8888999999988887653                     


Q ss_pred             cCchhhcCCcccCeeecccCcCcccCCccc
Q 044236          249 AIPQQFGELAQLQHLDLSFNDLSGIPPSVL  278 (747)
Q Consensus       249 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l  278 (747)
                       +| .+..+++|+.|+|++|.++..+...+
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~~~~~~~~  220 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECLNKPINHQ  220 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred             -Ch-hhccCCCCCEEECcCCcccCCccccc
Confidence             33 37889999999999999988665443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=7e-18  Score=167.75  Aligned_cols=133  Identities=17%  Similarity=0.220  Sum_probs=122.7

Q ss_pred             CCCEEEeeccCCCCCCC-hhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           95 TLRVLSLVSLGIWGPLP-DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p-~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      .++.|+|++|.|.+..| ..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|+.|+|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            46899999999988755 45899999999999999999988889999999999999999999988889999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~  227 (747)
                      ++|++++..|..|.++++|+.|+|++|++++..| .+..+++|+.|+|++|.+..
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            9999999999999999999999999999999877 47889999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=2.3e-18  Score=176.25  Aligned_cols=171  Identities=25%  Similarity=0.356  Sum_probs=121.1

Q ss_pred             CCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEE
Q 044236           92 RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL  171 (747)
Q Consensus        92 ~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L  171 (747)
                      ++.+|..++++.|.+.+ ++ .+..+++|+.|+|++|.++. +| .+..+++|++|+|++|.+++..+  +..+++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            45566667777777754 33 56777888888888887753 44 67778888888888888876544  7788888888


Q ss_pred             EccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCc
Q 044236          172 SLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIP  251 (747)
Q Consensus       172 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p  251 (747)
                      +|++|++++ +|.. .. ++|+.|++++|.+++ ++.+..+++|+.|+|++|++++                      +|
T Consensus        91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~----------------------~~  144 (263)
T 1xeu_A           91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKS----------------------IV  144 (263)
T ss_dssp             ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCB----------------------CG
T ss_pred             ECCCCccCC-cCcc-cc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCC----------------------Ch
Confidence            888888875 3332 22 778888888887775 3556777777777777776543                      22


Q ss_pred             hhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccc
Q 044236          252 QQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       252 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                       .+..+++|+.|+|++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             466777777788887777776  4567777788888888777644

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=9.7e-18  Score=163.75  Aligned_cols=154  Identities=18%  Similarity=0.294  Sum_probs=128.2

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCc
Q 044236          114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLT  193 (747)
Q Consensus       114 ~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~  193 (747)
                      .+.+++|+.|+|++|.+. .+| .+..+++|++|++++|.++.  +..+..+++|+.|++++|++++..|..++++++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            467889999999999987 666 69999999999999997653  45889999999999999999988888999999999


Q ss_pred             EEecccCccccCCC-CCCCCCcCCEEEccCCC-CCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCc
Q 044236          194 DIAMSNNELSGKLP-DMSALTSLHVLDLRENK-LDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLS  271 (747)
Q Consensus       194 ~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  271 (747)
                      .|++++|.+++..+ .+..+++|+.|++++|. ++                      .+| .+..+++|+.|++++|+++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~----------------------~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT----------------------DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC----------------------CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc----------------------ccH-hhcCCCCCCEEECCCCCCc
Confidence            99999999987555 47888888888888886 43                      234 5788899999999999998


Q ss_pred             ccCCcccCCCCccceeecccccCcc
Q 044236          272 GIPPSVLFSLPNISYLHLASNMLSG  296 (747)
Q Consensus       272 ~~~~~~l~~l~~L~~L~l~~N~l~g  296 (747)
                      +.+  .+..+++|+.|++++|++.+
T Consensus       173 ~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          173 DYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCT--TGGGCSSCCEEEECBC----
T ss_pred             ChH--HhccCCCCCEEEeeCcccCC
Confidence            865  57889999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=3.8e-20  Score=209.74  Aligned_cols=182  Identities=21%  Similarity=0.252  Sum_probs=113.2

Q ss_pred             ccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCC-------------CCCCCCccccCCCCCCEEE-cccCCCC
Q 044236           90 LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF-------------LFGAIPSGISRLVRLQTLT-MDTNFFD  155 (747)
Q Consensus        90 l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~~~  155 (747)
                      +..+++|+.|+|+.|.+. .+|+.+++|++|+.|++++|.             +.+.+|..++++++|+.|+ ++.|.+.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            367888888888888884 688888888888888887764             5667777777777777777 5555332


Q ss_pred             CCCcc------cccC--CCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCC
Q 044236          156 DNVPD------WWDS--LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       156 ~~~p~------~~~~--l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~  227 (747)
                      . ++.      .+..  ...|+.|+|++|+|++ +|. |+++++|+.|+|++|.|+..++.++.+++|+.|+|++|+|++
T Consensus       424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC
Confidence            1 110      0000  1246667777777665 454 666677777777777766332346666666666666666554


Q ss_pred             CCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccC-CcccCCCCccceeecccccCcccc
Q 044236          228 GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIP-PSVLFSLPNISYLHLASNMLSGTL  298 (747)
Q Consensus       228 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~g~i  298 (747)
                                            +| .|+.+++|+.|+|++|+|++.+ |..+..+++|+.|+|++|++++.+
T Consensus       501 ----------------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          501 ----------------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             ----------------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ----------------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence                                  33 4555555555555555555554 455555555555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=3.1e-17  Score=167.75  Aligned_cols=156  Identities=22%  Similarity=0.325  Sum_probs=132.4

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..+++|++|++++|+|.. +| .+..+++|++|+|++|.+++..|  +.++++|++|+|++|.+++ +|.. .. ++|
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L  108 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACL  108 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSC
T ss_pred             chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-Ccc
Confidence            57899999999999999964 66 79999999999999999987655  9999999999999999987 4433 33 999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcc
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSG  248 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~  248 (747)
                      +.|++++|++++.  ..+.++++|+.|++++|++++. +.+..+++|+.|+|++|++++                     
T Consensus       109 ~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~---------------------  164 (263)
T 1xeu_A          109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN---------------------  164 (263)
T ss_dssp             CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB---------------------
T ss_pred             cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc---------------------
Confidence            9999999999974  4699999999999999999875 578888999999988888764                     


Q ss_pred             cCchhhcCCcccCeeecccCcCcccCCcc
Q 044236          249 AIPQQFGELAQLQHLDLSFNDLSGIPPSV  277 (747)
Q Consensus       249 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  277 (747)
                      .  ..+..+++|+.|+|++|.+++.+...
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCCcccc
Confidence            2  45677888899999999888776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=1e-19  Score=202.50  Aligned_cols=227  Identities=20%  Similarity=0.167  Sum_probs=143.7

Q ss_pred             CCCCCCCCCccCC----CcccccccCCCCCCEEEeeccCCCCCCChhcc-----CCCCCCEEEcccCCCCCC----CCcc
Q 044236           71 PIPNQTLSESFSI----DSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIH-----RLSSLELLDMSSNFLFGA----IPSG  137 (747)
Q Consensus        71 ~~~~~~l~~~~~~----~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~-----~L~~L~~L~Ls~N~l~~~----~p~~  137 (747)
                      .+..++++.+...    ..++..+..+++|++|+|++|.+.+..+..+.     .+++|++|+|++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            3566677766433    25677788888888888888887654443332     356788888888887763    3556


Q ss_pred             ccCCCCCCEEEcccCCCCCCCccccc-----CCCCCCEEEccCCcCCCC----CchhhcCCccCcEEecccCccccCC--
Q 044236          138 ISRLVRLQTLTMDTNFFDDNVPDWWD-----SLSNLTVLSLKSNQLKGQ----FPSSICRIATLTDIAMSNNELSGKL--  206 (747)
Q Consensus       138 ~~~l~~L~~L~L~~N~~~~~~p~~~~-----~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~--  206 (747)
                      +..+++|++|+|++|.++...+..+.     .+++|+.|++++|.+++.    ++..+..+++|+.|++++|.++...  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            66778888888888877654444443     356788888888877753    4666677777888888877775431  


Q ss_pred             ---CC-CCCCCcCCEEEccCCCCCCC----CCCC---CCCcceeecCCCcCcccCchhhcC-----CcccCeeecccCcC
Q 044236          207 ---PD-MSALTSLHVLDLRENKLDSG----LPLM---PKGLVTVLLSRNLFSGAIPQQFGE-----LAQLQHLDLSFNDL  270 (747)
Q Consensus       207 ---p~-~~~l~~L~~L~L~~N~l~~~----~~~~---~~~L~~L~ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l  270 (747)
                         +. +..+++|+.|++++|.++..    ++..   .++|++|++++|.+++..+..+..     .++|+.|+|++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               11 23466777777777776542    2211   345666777777665443333332     24666666666666


Q ss_pred             ccc----CCcccCCCCccceeecccccCccc
Q 044236          271 SGI----PPSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       271 ~~~----~~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      ++.    .+..+..+++|++|++++|.+++.
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            654    234445556666666666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=3.6e-19  Score=198.08  Aligned_cols=271  Identities=19%  Similarity=0.157  Sum_probs=194.3

Q ss_pred             cEEEEecCCCCCCCC-----CCCC-CCCCCCCCCCCCccCCCcccccc-----cCCCCCCEEEeeccCCCCC----CChh
Q 044236           49 SVTGLKIMGDKPVKE-----NTAY-NGHPIPNQTLSESFSIDSFVTTL-----TRLTTLRVLSLVSLGIWGP----LPDK  113 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~~~~~~~~l-----~~l~~L~~L~L~~n~i~~~----~p~~  113 (747)
                      .++.|++.++.....     ...+ ....+..++++.+...+..+..+     ..+++|++|+|++|++.+.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            477888887654210     0001 12356667777765433222222     3366899999999999774    4667


Q ss_pred             ccCCCCCCEEEcccCCCCCCCCcccc-----CCCCCCEEEcccCCCCCC----CcccccCCCCCCEEEccCCcCCCCC--
Q 044236          114 IHRLSSLELLDMSSNFLFGAIPSGIS-----RLVRLQTLTMDTNFFDDN----VPDWWDSLSNLTVLSLKSNQLKGQF--  182 (747)
Q Consensus       114 ~~~L~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~~~~~----~p~~~~~l~~L~~L~l~~N~l~~~~--  182 (747)
                      +..+++|++|+|++|.+....+..+.     .+++|++|+|++|.++..    ++..+..+++|+.|++++|.++...  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            78889999999999998665444443     367999999999999874    5778888999999999999987542  


Q ss_pred             ---chhhcCCccCcEEecccCccccC----CC-CCCCCCcCCEEEccCCCCCCCC--------CCCCCCcceeecCCCcC
Q 044236          183 ---PSSICRIATLTDIAMSNNELSGK----LP-DMSALTSLHVLDLRENKLDSGL--------PLMPKGLVTVLLSRNLF  246 (747)
Q Consensus       183 ---p~~~~~l~~L~~L~l~~N~l~~~----~p-~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~L~~L~ls~N~l  246 (747)
                         +..+..+++|+.|++++|.++..    ++ .+..+++|+.|+|++|.++...        ....++|++|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               22333688999999999998863    33 3566889999999999885321        11235899999999999


Q ss_pred             ccc----CchhhcCCcccCeeecccCcCcccCCcccCC-----CCccceeecccccCcc----ccCcCCCCCCCCCCCCc
Q 044236          247 SGA----IPQQFGELAQLQHLDLSFNDLSGIPPSVLFS-----LPNISYLHLASNMLSG----TLPKDLSCGSKLDSISD  313 (747)
Q Consensus       247 ~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~l~~N~l~g----~ip~~~~~~~~l~~~~~  313 (747)
                      ++.    ++..+..+++|+.|+|++|.+++..+..+..     .++|+.|++++|.+++    .+|..+..++.|+    
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~----  401 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR----  401 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC----
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc----
Confidence            876    5677788899999999999998765554432     6799999999999986    6776655444443    


Q ss_pred             cceeeeccccCC
Q 044236          314 KRVVKFGGNCLS  325 (747)
Q Consensus       314 ~~~~~~~~n~~~  325 (747)
                        .+.+++|.++
T Consensus       402 --~L~l~~N~i~  411 (461)
T 1z7x_W          402 --ELDLSNNCLG  411 (461)
T ss_dssp             --EEECCSSSCC
T ss_pred             --EEECCCCCCC
Confidence              4456666544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=4.8e-17  Score=158.04  Aligned_cols=129  Identities=21%  Similarity=0.283  Sum_probs=106.8

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCc-cccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPS-GISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~  175 (747)
                      +++++++|++ +.+|..+..  +|++|+|++|.+.+..+. .|..+++|++|+|++|.+++..|..|.++++|+.|+|++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            6788888888 567776643  888899999988777665 488888899999999988888888888889999999999


Q ss_pred             CcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCC
Q 044236          176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSG  228 (747)
Q Consensus       176 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~  228 (747)
                      |+|++..|..|.++++|+.|+|++|++++.+|. +..+++|++|+|++|.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            998888888888888899999999988887774 77888888888888887654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.6e-17  Score=194.16  Aligned_cols=178  Identities=16%  Similarity=0.078  Sum_probs=97.6

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCC-----CEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSL-----ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L-----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      +.++.|+|..|.+.. +|..+-....|     ..++++.|.+. ..|..|..+.+|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            446667777777654 33332222112     22233334433 55788999999999999999987 577777789999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCc
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNL  245 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~  245 (747)
                      +.|+|++|.|+ .+|..|++|++|+.|+|++|.|+..+..++.|++|++|+|++|.|+ .+|..   .++|+.|+|++|.
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence            99999999998 7899999999999999999999944346888999999999988875 33322   2345555555555


Q ss_pred             CcccCchhhcCCcc-cCeeecccCcCcccCCc
Q 044236          246 FSGAIPQQFGELAQ-LQHLDLSFNDLSGIPPS  276 (747)
Q Consensus       246 l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~  276 (747)
                      |++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            55555555543321 12345555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=4.8e-17  Score=158.05  Aligned_cols=113  Identities=22%  Similarity=0.264  Sum_probs=106.2

Q ss_pred             CCCEEEeeccCCCCCCCh-hccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           95 TLRVLSLVSLGIWGPLPD-KIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~-~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      +|++|+|++|.|.+..+. .|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|+.|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            899999999999876664 4899999999999999999999999999999999999999999998989999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP  207 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  207 (747)
                      ++|++++..|..|..+++|+.|++++|.+++..+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9999999999999999999999999999987654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.3e-16  Score=151.38  Aligned_cols=135  Identities=21%  Similarity=0.234  Sum_probs=119.6

Q ss_pred             cCCCCCCEEEeeccCCC-CCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCC
Q 044236           91 TRLTTLRVLSLVSLGIW-GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT  169 (747)
Q Consensus        91 ~~l~~L~~L~L~~n~i~-~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~  169 (747)
                      ...++|+.|+|++|.+. +.+|..+..+++|++|+|++|.+++.  ..|..+++|++|+|++|.+++.+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34478999999999997 78999899999999999999999876  7899999999999999999988888888899999


Q ss_pred             EEEccCCcCCCCC-chhhcCCccCcEEecccCccccCCC----CCCCCCcCCEEEccCCCCCC
Q 044236          170 VLSLKSNQLKGQF-PSSICRIATLTDIAMSNNELSGKLP----DMSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       170 ~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p----~~~~l~~L~~L~L~~N~l~~  227 (747)
                      .|++++|.+++.. +..+..+++|+.|++++|.+++..+    .+..+++|+.|++++|.+..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999999998643 3789999999999999999998776    57889999999999988753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=2.9e-16  Score=148.98  Aligned_cols=108  Identities=20%  Similarity=0.208  Sum_probs=84.1

Q ss_pred             CCCCCCEEEcccCCCC-CCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcE
Q 044236          116 RLSSLELLDMSSNFLF-GAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTD  194 (747)
Q Consensus       116 ~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  194 (747)
                      ..++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++.  ..+..+++|+.|++++|++++.+|..+.++++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3478999999999997 78898889999999999999998875  77888999999999999998878887777888888


Q ss_pred             EecccCccccCC--CCCCCCCcCCEEEccCCCC
Q 044236          195 IAMSNNELSGKL--PDMSALTSLHVLDLRENKL  225 (747)
Q Consensus       195 L~l~~N~l~~~~--p~~~~l~~L~~L~L~~N~l  225 (747)
                      |++++|.+++..  +.+..+++|+.|++++|.+
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence            888877776532  2344555555555444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=6.1e-19  Score=199.89  Aligned_cols=188  Identities=20%  Similarity=0.195  Sum_probs=135.2

Q ss_pred             cCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCC-------------CCCCCcccccCCCCCCEEE-ccCCcCCC
Q 044236          115 HRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF-------------FDDNVPDWWDSLSNLTVLS-LKSNQLKG  180 (747)
Q Consensus       115 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------~~~~~p~~~~~l~~L~~L~-l~~N~l~~  180 (747)
                      ..+++|+.|+|++|.|. .+|..+++|++|+.|++++|.             +.+.+|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56788888888888884 778888888888888887664             4555666666777777776 5555432 


Q ss_pred             CCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCC--CCCcceeecCCCcCcccCchhhcCCc
Q 044236          181 QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM--PKGLVTVLLSRNLFSGAIPQQFGELA  258 (747)
Q Consensus       181 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~--~~~L~~L~ls~N~l~~~~p~~~~~l~  258 (747)
                                +|..+.+++|.++...+     ..|+.|+|++|.|++ +|..  .++|+.|+|++|.|+ .+|..|+.++
T Consensus       424 ----------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             ----------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCC
Confidence                      23333344444443221     136667777776665 3432  245677777777777 6889999999


Q ss_pred             ccCeeecccCcCcccCCcccCCCCccceeecccccCcccc-CcCCCCCCCCCCCCccceeeeccccCCCCCC
Q 044236          259 QLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTL-PKDLSCGSKLDSISDKRVVKFGGNCLSYDTP  329 (747)
Q Consensus       259 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~i-p~~~~~~~~l~~~~~~~~~~~~~n~~~~~~~  329 (747)
                      +|+.|+|++|+|++++  .++.+++|+.|+|++|+|++.+ |..+..++.|+      .+.+++|.++..++
T Consensus       487 ~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~------~L~L~~N~l~~~~~  550 (567)
T 1dce_A          487 CLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV------LLNLQGNSLCQEEG  550 (567)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC------EEECTTSGGGGSSS
T ss_pred             CCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC------EEEecCCcCCCCcc
Confidence            9999999999999954  6899999999999999999887 88887666554      56677887765443

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.65  E-value=4.3e-17  Score=172.54  Aligned_cols=144  Identities=12%  Similarity=0.100  Sum_probs=97.8

Q ss_pred             CCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--------------hhcHHHHHHHHHHHhcCCCCCcceeeeeeec
Q 044236          442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--------------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE  507 (747)
Q Consensus       442 f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~  507 (747)
                      |.+...||+|+||.||+|...+|+.||||+++...              .........+.++.....|+|+++++.....
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~  176 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP  176 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88899999999999999998889999999875311              0111222233333333334444444332211


Q ss_pred             cCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC
Q 044236          508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR  587 (747)
Q Consensus       508 ~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  587 (747)
                      ...+.  .....+|||||+++++|.++....         ....++.|++.+|.|||+   .+||||||||.|||+++++
T Consensus       177 vp~p~--~~~~~~LVME~i~G~~L~~l~~~~---------~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~dg  242 (397)
T 4gyi_A          177 VPEPI--AQSRHTIVMSLVDALPMRQVSSVP---------DPASLYADLIALILRLAK---HGLIHGDFNEFNILIREEK  242 (397)
T ss_dssp             CCCEE--EEETTEEEEECCSCEEGGGCCCCS---------CHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEEEE
T ss_pred             CCeee--eccCceEEEEecCCccHhhhcccH---------HHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeCCC
Confidence            00000  001237999999998887765321         234678999999999999   7899999999999998776


Q ss_pred             ----------cEEEeccccccc
Q 044236          588 ----------IAKLSDYGISII  599 (747)
Q Consensus       588 ----------~~kl~DFGla~~  599 (747)
                                .+.|+||+-+..
T Consensus       243 d~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          243 DAEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             CSSCTTSEEEEEEECCCTTCEE
T ss_pred             CcccccccccceEEEEeCCccc
Confidence                      389999997743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=1.2e-16  Score=148.33  Aligned_cols=129  Identities=20%  Similarity=0.226  Sum_probs=115.3

Q ss_pred             CCCCCCEEEeeccCCC-CCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCE
Q 044236           92 RLTTLRVLSLVSLGIW-GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTV  170 (747)
Q Consensus        92 ~l~~L~~L~L~~n~i~-~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~  170 (747)
                      ..++|+.|++++|.+. +.+|..+..+++|++|+|++|.+++.  ..+.++++|++|+|++|.+++.+|..+..+++|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999999998 78999999999999999999999876  77999999999999999999988998889999999


Q ss_pred             EEccCCcCCCC-CchhhcCCccCcEEecccCccccCCC----CCCCCCcCCEEEccC
Q 044236          171 LSLKSNQLKGQ-FPSSICRIATLTDIAMSNNELSGKLP----DMSALTSLHVLDLRE  222 (747)
Q Consensus       171 L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p----~~~~l~~L~~L~L~~  222 (747)
                      |++++|++++. .|..+.++++|+.|++++|.+++..+    .+..+++|+.||+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999873 45889999999999999999998776    377889999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.9e-15  Score=144.49  Aligned_cols=126  Identities=20%  Similarity=0.275  Sum_probs=99.6

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      +++++++|++. .+|..+.  ++|+.|+|++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46777788874 4666543  57888888888886 66778888888888888888888877778888888888888888


Q ss_pred             cCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCC
Q 044236          177 QLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLD  226 (747)
Q Consensus       177 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~  226 (747)
                      +|++..|..|.++++|+.|+|++|.|++..+. +..+++|+.|+|++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            88877777888888888888888888876664 677888888888888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.1e-15  Score=141.69  Aligned_cols=129  Identities=20%  Similarity=0.175  Sum_probs=111.0

Q ss_pred             CCCCCCEEEcccCCCC-CCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcE
Q 044236          116 RLSSLELLDMSSNFLF-GAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTD  194 (747)
Q Consensus       116 ~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  194 (747)
                      ..++|+.|++++|.++ +.+|..+..+++|++|+|++|.+++.  ..++.+++|+.|++++|++++.+|..+.++++|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999999998 78999999999999999999999886  78999999999999999999889999989999999


Q ss_pred             EecccCccccCC--CCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCc---hhhcCCcccCeeeccc
Q 044236          195 IAMSNNELSGKL--PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIP---QQFGELAQLQHLDLSF  267 (747)
Q Consensus       195 L~l~~N~l~~~~--p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~Ls~  267 (747)
                      |++++|.+++..  +.+..+++|+.|++++|.++                     +..+   ..|..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~---------------------~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT---------------------NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG---------------------GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc---------------------chHHHHHHHHHHCCCcccccCCC
Confidence            999999998743  45778888888888777664                     3333   4788888999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=6.6e-15  Score=140.84  Aligned_cols=129  Identities=26%  Similarity=0.306  Sum_probs=103.9

Q ss_pred             CCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC
Q 044236           96 LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        96 L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~  175 (747)
                      .+.+++++|++. .+|..+  .++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467888888874 456544  36888999999988877777788888999999999988887777788888999999999


Q ss_pred             CcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCC
Q 044236          176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       176 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~  227 (747)
                      |++++..+..+.++++|+.|++++|.+++..+. +..+++|+.|+|++|.+.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            998877777788888888899988888876665 4678888888888887664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=8.4e-15  Score=142.12  Aligned_cols=110  Identities=23%  Similarity=0.282  Sum_probs=103.5

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      .+|+.|+|++|.|. .+|..|.++++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|+.|+|
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            47999999999996 68899999999999999999999999999999999999999999999998999999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCcccc
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSG  204 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  204 (747)
                      ++|+|++..+..|..+++|+.|++++|.+..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9999997777789999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.3e-14  Score=138.85  Aligned_cols=115  Identities=23%  Similarity=0.248  Sum_probs=105.2

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|+.|+|++|++.+..+..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            58999999999998877778899999999999999999888888999999999999999999988888999999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCCC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD  208 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  208 (747)
                      ++|++++..+..+.++++|+.|++++|.+.+..|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            99999977667788999999999999999876653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=5.7e-15  Score=141.18  Aligned_cols=132  Identities=23%  Similarity=0.267  Sum_probs=112.2

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCC-CCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLS-SLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN  167 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~  167 (747)
                      .+.++.+|+.|+|++|++.. +|. +..+. +|++|+|++|.+++.  ..|..+++|++|+|++|.+++..+..|..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            46788899999999999975 565 55554 999999999999875  67999999999999999999866666799999


Q ss_pred             CCEEEccCCcCCCCCch--hhcCCccCcEEecccCccccCCCC----CCCCCcCCEEEccCCCC
Q 044236          168 LTVLSLKSNQLKGQFPS--SICRIATLTDIAMSNNELSGKLPD----MSALTSLHVLDLRENKL  225 (747)
Q Consensus       168 L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~----~~~l~~L~~L~L~~N~l  225 (747)
                      |+.|++++|+++ .+|.  .+.++++|+.|++++|.++...+.    +..+++|+.||++.|.+
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            999999999996 4665  888999999999999999855443    67889999999988865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=4.5e-17  Score=159.12  Aligned_cols=109  Identities=19%  Similarity=0.311  Sum_probs=60.4

Q ss_pred             ccCCCCCCEEEeeccCCCCCCCh------hccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCccccc
Q 044236           90 LTRLTTLRVLSLVSLGIWGPLPD------KIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWD  163 (747)
Q Consensus        90 l~~l~~L~~L~L~~n~i~~~~p~------~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~  163 (747)
                      +.....++.++++.+.+.|.+|.      .|+++++|++|+|++|.+++ +| .+.++++|++|+|++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            45555666666666666666555      56666666666666666554 44 5555566666666665555 2444444


Q ss_pred             CCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccc
Q 044236          164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS  203 (747)
Q Consensus       164 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  203 (747)
                      .+++|+.|++++|++++ +| .+.++++|+.|++++|.++
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC
Confidence            55555555555555553 22 3444444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=8.4e-17  Score=157.17  Aligned_cols=155  Identities=25%  Similarity=0.311  Sum_probs=111.7

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCc------cccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhc
Q 044236          114 IHRLSSLELLDMSSNFLFGAIPS------GISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSIC  187 (747)
Q Consensus       114 ~~~L~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~  187 (747)
                      +.....++.++|+.|.+.|.+|.      .|.++++|++|+|++|.+++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            45556777777777777777776      78888888888888888876 56 7778888888888888887 5677777


Q ss_pred             CCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccC-chhhcCCcccCeeecc
Q 044236          188 RIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI-PQQFGELAQLQHLDLS  266 (747)
Q Consensus       188 ~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~-p~~~~~l~~L~~L~Ls  266 (747)
                      .+++|+.|++++|.+++ +|.+..+++|+.|++++|++++                     .. ...+..+++|+.|+++
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~---------------------~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITN---------------------WGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCC---------------------HHHHHHHTTTTTCSEEEEC
T ss_pred             cCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCc---------------------hhHHHHHhcCCCCCEEEec
Confidence            77888888888888876 4456677777777777776542                     11 1356677777777777


Q ss_pred             cCcCcccCCc----------ccCCCCccceeecccccCc
Q 044236          267 FNDLSGIPPS----------VLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       267 ~N~l~~~~~~----------~l~~l~~L~~L~l~~N~l~  295 (747)
                      +|.+++.+|.          .+..+++|+.|+  +|.++
T Consensus       149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7777766554          256677777775  55554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=2e-14  Score=152.21  Aligned_cols=96  Identities=16%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             CCcCCEEEccCCCCCCCCCC---CCCCcceeecCCCcCcccCchhhcCCcccC-eeecccCcCcccCCcccCCCCcccee
Q 044236          212 LTSLHVLDLRENKLDSGLPL---MPKGLVTVLLSRNLFSGAIPQQFGELAQLQ-HLDLSFNDLSGIPPSVLFSLPNISYL  287 (747)
Q Consensus       212 l~~L~~L~L~~N~l~~~~~~---~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L  287 (747)
                      +++|+.|+|++|+++.....   ...+|++++|.+| ++..-+..|.++++|+ .|+|.+ .++.+.+.+|.+|++|+.|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            56777777777766533222   2356777777776 6656667777777787 777777 6777777777777888888


Q ss_pred             ecccccCccccCcCCCCCCCCC
Q 044236          288 HLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       288 ~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      +++.|.+...-+..|..+++|+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCC
T ss_pred             EeCCCccCccchhhhcCCcchh
Confidence            7777777644444555555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=2e-14  Score=137.35  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             hccCCCCCCEEEcccCCCCCCCCccccCCC-CCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCcc
Q 044236          113 KIHRLSSLELLDMSSNFLFGAIPSGISRLV-RLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT  191 (747)
Q Consensus       113 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~  191 (747)
                      .+.++.+|+.|+|++|.++. +|. +..+. +|++|+|++|.+++.  ..|..+++|+.|++++|++++..|..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            45667788888888888764 444 44443 777777777777764  46677777777777777776544444456666


Q ss_pred             CcEEecccCccc
Q 044236          192 LTDIAMSNNELS  203 (747)
Q Consensus       192 L~~L~l~~N~l~  203 (747)
                      |+.|++++|.++
T Consensus        90 L~~L~L~~N~i~  101 (176)
T 1a9n_A           90 LTELILTNNSLV  101 (176)
T ss_dssp             CCEEECCSCCCC
T ss_pred             CCEEECCCCcCC
Confidence            666666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.49  E-value=8.9e-16  Score=176.34  Aligned_cols=212  Identities=14%  Similarity=0.095  Sum_probs=108.8

Q ss_pred             cccccccCCCCCCEEEeeccCCCCCCC-hhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc-----------cC
Q 044236           85 SFVTTLTRLTTLRVLSLVSLGIWGPLP-DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD-----------TN  152 (747)
Q Consensus        85 ~~~~~l~~l~~L~~L~L~~n~i~~~~p-~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-----------~N  152 (747)
                      .+|..+..+++|++|+|++|.+.+... ..+.++++|+.|+|++|...+.++..+..+++|++|+|+           .|
T Consensus       284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~  363 (592)
T 3ogk_B          284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG  363 (592)
T ss_dssp             TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred             HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence            344455555566666666555443322 224555666666665222222233333455566666666           23


Q ss_pred             CCCCC-CcccccCCCCCCEEEccCCcCCCCCchhhcC-CccCcEEecc----cCccccCCCC------CCCCCcCCEEEc
Q 044236          153 FFDDN-VPDWWDSLSNLTVLSLKSNQLKGQFPSSICR-IATLTDIAMS----NNELSGKLPD------MSALTSLHVLDL  220 (747)
Q Consensus       153 ~~~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-l~~L~~L~l~----~N~l~~~~p~------~~~l~~L~~L~L  220 (747)
                      .+++. ++..+..+++|+.|+++.|++++..+..++. +++|+.|+++    .|.+++.+.+      +..+++|+.|+|
T Consensus       364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L  443 (592)
T 3ogk_B          364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF  443 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence            44332 1222334566666666666666555555544 5666666664    4555543111      334566666666


Q ss_pred             cCCC--CCCCCC----CCCCCcceeecCCCcCcc-cCchhhcCCcccCeeecccCcCccc-CCcccCCCCccceeecccc
Q 044236          221 RENK--LDSGLP----LMPKGLVTVLLSRNLFSG-AIPQQFGELAQLQHLDLSFNDLSGI-PPSVLFSLPNISYLHLASN  292 (747)
Q Consensus       221 ~~N~--l~~~~~----~~~~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N  292 (747)
                      +.|.  +++..+    ...++|+.|++++|.+++ .++..+..+++|+.|+|++|.|++. ++..+..+++|++|+|++|
T Consensus       444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence            5322  332111    123456666666666665 2344455666666666666666543 2333345666666666666


Q ss_pred             cCcc
Q 044236          293 MLSG  296 (747)
Q Consensus       293 ~l~g  296 (747)
                      ++++
T Consensus       524 ~it~  527 (592)
T 3ogk_B          524 RASM  527 (592)
T ss_dssp             BCCT
T ss_pred             cCCH
Confidence            6553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=9.8e-14  Score=146.83  Aligned_cols=194  Identities=12%  Similarity=0.052  Sum_probs=151.8

Q ss_pred             CCCCCEEEeeccCCC--------------------CCCChhccC--------CCCCCEEEcccCCCCCCCCccccCCCCC
Q 044236           93 LTTLRVLSLVSLGIW--------------------GPLPDKIHR--------LSSLELLDMSSNFLFGAIPSGISRLVRL  144 (747)
Q Consensus        93 l~~L~~L~L~~n~i~--------------------~~~p~~~~~--------L~~L~~L~Ls~N~l~~~~p~~~~~l~~L  144 (747)
                      +++|+.|+|++|.|.                    ...+..|.+        +++|+.|+|+. .++..-+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            788999999999887                    122345677        89999999998 7877777889999999


Q ss_pred             CEEEcccCCCCCCCcccccCCCCCCEEEccCCcC----C----------------------CCCchhh------------
Q 044236          145 QTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL----K----------------------GQFPSSI------------  186 (747)
Q Consensus       145 ~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l----~----------------------~~~p~~~------------  186 (747)
                      +.|+|++|.+....+..|.++.++..+.+..+..    .                      +.++..+            
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            9999999988877788888888777777655221    0                      0001000            


Q ss_pred             ----------------cCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCC---CCCCCCcc-eeecCCCc
Q 044236          187 ----------------CRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGL---PLMPKGLV-TVLLSRNL  245 (747)
Q Consensus       187 ----------------~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~-~L~ls~N~  245 (747)
                                      ..+++|+.|++++|+++...+ .|.++.+|+.|+|.+| +...-   +....+|+ .+.+.+ .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                            127899999999999986555 3889999999999998 54322   22356788 999998 7


Q ss_pred             CcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeec
Q 044236          246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHL  289 (747)
Q Consensus       246 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  289 (747)
                      ++...+..|.++++|+.|+++.|+++.+.+.+|.++++|+.++.
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            87777899999999999999999999999999999999999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.7e-13  Score=129.97  Aligned_cols=107  Identities=25%  Similarity=0.280  Sum_probs=72.7

Q ss_pred             CCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC
Q 044236           96 LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        96 L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~  175 (747)
                      .+.|++++|++.. +|..+.  ++|++|+|++|.|++..|..|.++++|++|+|++|.+++..+..|..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4567777777743 565553  6677777777777777777777777777777777777766666667777777777777


Q ss_pred             CcCCCCCchhhcCCccCcEEecccCccccC
Q 044236          176 NQLKGQFPSSICRIATLTDIAMSNNELSGK  205 (747)
Q Consensus       176 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  205 (747)
                      |+|++..+..|.++++|+.|+|++|.++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            777765555566666666666666666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=2.4e-13  Score=129.47  Aligned_cols=106  Identities=24%  Similarity=0.305  Sum_probs=74.9

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      +.+++++|++ +.+|..+.  ++|+.|+|++|.|++..|..|.++++|++|+|++|.|++..+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            5677777777 45666554  67777777777777777777777777777777777777765556677777777777777


Q ss_pred             cCCCCCchhhcCCccCcEEecccCccccC
Q 044236          177 QLKGQFPSSICRIATLTDIAMSNNELSGK  205 (747)
Q Consensus       177 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  205 (747)
                      +|++..+..|.++++|+.|+|++|.+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            77755555566666666666666666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.44  E-value=2.5e-15  Score=172.61  Aligned_cols=218  Identities=11%  Similarity=0.035  Sum_probs=135.6

Q ss_pred             CCCCCCCCCccCCCcccccccCC--CCCCEEEeeccC-CCC-CCChhccCCCCCCEEEcccCCCCCC----CCccccCCC
Q 044236           71 PIPNQTLSESFSIDSFVTTLTRL--TTLRVLSLVSLG-IWG-PLPDKIHRLSSLELLDMSSNFLFGA----IPSGISRLV  142 (747)
Q Consensus        71 ~~~~~~l~~~~~~~~~~~~l~~l--~~L~~L~L~~n~-i~~-~~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~  142 (747)
                      .+..++|+.+...+..+..+..+  .+|++|+|++|. +.. .++..+.++++|++|+|++|.+++.    ++..+.+++
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~  192 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT  192 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence            34455666654444444555553  448999998876 211 1333345788899999999887665    444566788


Q ss_pred             CCCEEEcccCCCCC----CCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCcccc----CCCCCCCCCc
Q 044236          143 RLQTLTMDTNFFDD----NVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG----KLPDMSALTS  214 (747)
Q Consensus       143 ~L~~L~L~~N~~~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~l~~  214 (747)
                      +|++|+|++|.+++    .++..+.++++|+.|++++|.+.+ +|..+.++++|+.|+++.+....    ....+..+++
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            89999999888873    344556678889999999888875 67778888888888887533221    1113456667


Q ss_pred             CCEEEccCCCCCCCCCCC---CCCcceeecCCCcCcccCc-hhhcCCcccCeeecccCcCcccCCcccCCCCccceeecc
Q 044236          215 LHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSGAIP-QQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLA  290 (747)
Q Consensus       215 L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  290 (747)
                      |+.|+++++.. ..+|..   .++|++|+|++|.+++... ..+..+++|+.|+|+++-..+.++..+..+++|++|+++
T Consensus       272 L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          272 LCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            77777766422 222221   3466777777776654433 335666677777766332222333333456666666666

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=8e-13  Score=125.31  Aligned_cols=106  Identities=28%  Similarity=0.340  Sum_probs=94.3

Q ss_pred             CCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecc
Q 044236          119 SLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMS  198 (747)
Q Consensus       119 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  198 (747)
                      ..+.|++++|.++. +|..+.  ++|++|+|++|.+++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35799999999864 676663  889999999999999889999999999999999999998777888999999999999


Q ss_pred             cCccccCCCC-CCCCCcCCEEEccCCCCCC
Q 044236          199 NNELSGKLPD-MSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       199 ~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~  227 (747)
                      +|+|++..+. +..+++|+.|+|++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            9999988775 7889999999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=1.3e-12  Score=124.38  Aligned_cols=105  Identities=26%  Similarity=0.349  Sum_probs=93.4

Q ss_pred             CCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEeccc
Q 044236          120 LELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSN  199 (747)
Q Consensus       120 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  199 (747)
                      -+.+++++|.+ +.+|..+.  ++|++|+|++|.+++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++
T Consensus        14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            47899999998 57777664  8999999999999999899999999999999999999987667789999999999999


Q ss_pred             CccccCCCC-CCCCCcCCEEEccCCCCCC
Q 044236          200 NELSGKLPD-MSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       200 N~l~~~~p~-~~~l~~L~~L~L~~N~l~~  227 (747)
                      |+|++..+. +..+++|+.|+|++|.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            999987775 7889999999999998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.29  E-value=1.1e-10  Score=126.39  Aligned_cols=191  Identities=10%  Similarity=0.048  Sum_probs=90.2

Q ss_pred             CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 044236           95 TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK  174 (747)
Q Consensus        95 ~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~  174 (747)
                      +|+.+.|.+ .+...-+.+|.++++|+.++|+.|.++......|. ..+|+.+.|..| +...-...|.++++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            355555543 34333344555555555555555555443333443 355555555432 444444455555555555555


Q ss_pred             CCcCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCC--------CCCCCCCCCcceeecCCCc
Q 044236          175 SNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLD--------SGLPLMPKGLVTVLLSRNL  245 (747)
Q Consensus       175 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~L~~L~ls~N~  245 (747)
                      .| ++..-...|.+ .+|+.+.+. |+++...+ .|.++.+|+.+++.+|.+.        ...+....+|+.+.|. |.
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~  310 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES  310 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred             CC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence            43 33233334444 455555552 23332222 2455555666655555432        1111123345555555 23


Q ss_pred             CcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccC
Q 044236          246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML  294 (747)
Q Consensus       246 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  294 (747)
                      ++..-...|.++++|+.|+|..| ++.+...+|.++ +|+.|++.+|.+
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            44444455555555555555333 555555555555 555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=7.5e-12  Score=133.33  Aligned_cols=101  Identities=20%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             EEeecc-CCCCCCChhccCCCCCCEEEccc-CCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           99 LSLVSL-GIWGPLPDKIHRLSSLELLDMSS-NFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        99 L~L~~n-~i~~~~p~~~~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      ++++++ +|.+ +|. |..+++|+.|+|++ |.|.+..|..|.+|++|+.|+|++|.|++..|..|.+|++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            355555 5543 555 66666666666664 6665555555666666666666666666655555566666666666666


Q ss_pred             cCCCCCchhhcCCccCcEEecccCcc
Q 044236          177 QLKGQFPSSICRIATLTDIAMSNNEL  202 (747)
Q Consensus       177 ~l~~~~p~~~~~l~~L~~L~l~~N~l  202 (747)
                      +|++..+..|..+. |+.|+|.+|.+
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCc
Confidence            55543333333332 44444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.27  E-value=9.8e-14  Score=159.29  Aligned_cols=207  Identities=16%  Similarity=0.112  Sum_probs=91.0

Q ss_pred             ccccccCCCCCCEE-EeeccCCCCCCChhccCCCCCCEEEcccCCCCCCC-CccccCCCCCCEEEcccCCCCC-CCcccc
Q 044236           86 FVTTLTRLTTLRVL-SLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMDTNFFDD-NVPDWW  162 (747)
Q Consensus        86 ~~~~l~~l~~L~~L-~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~~~~-~~p~~~  162 (747)
                      ++..+.++++|+.| .+.... .+.+|..+..+++|+.|+|++|.+++.. +..+..+++|++|+|++| ++. .++...
T Consensus       257 l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~  334 (594)
T 2p1m_B          257 LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA  334 (594)
T ss_dssp             HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred             HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence            33455566666665 232222 1334444445566666666666544321 222345566666666655 221 112222


Q ss_pred             cCCCCCCEEEcc---------CCcCCCCCchhhc-CCccCcEEecccCccccCCC-CC-CCCCcCCEEEcc--C----CC
Q 044236          163 DSLSNLTVLSLK---------SNQLKGQFPSSIC-RIATLTDIAMSNNELSGKLP-DM-SALTSLHVLDLR--E----NK  224 (747)
Q Consensus       163 ~~l~~L~~L~l~---------~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p-~~-~~l~~L~~L~L~--~----N~  224 (747)
                      ..+++|+.|+++         .|.+++.....+. ++++|+.|.++.|.+++... .+ ..+++|+.|+|+  +    |.
T Consensus       335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence            235556666552         2333322222222 24555555555555543221 12 134555555555  2    33


Q ss_pred             CCCCCC--------CCCCCcceeecCCCcCcccCchhhcC-CcccCeeecccCcCcccCCccc-CCCCccceeecccccC
Q 044236          225 LDSGLP--------LMPKGLVTVLLSRNLFSGAIPQQFGE-LAQLQHLDLSFNDLSGIPPSVL-FSLPNISYLHLASNML  294 (747)
Q Consensus       225 l~~~~~--------~~~~~L~~L~ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~l~~N~l  294 (747)
                      ++....        ...++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|.+
T Consensus       415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            331100        0123455555544 444333333333 4555555555555544333222 3355555555555555


Q ss_pred             c
Q 044236          295 S  295 (747)
Q Consensus       295 ~  295 (747)
                      +
T Consensus       494 ~  494 (594)
T 2p1m_B          494 G  494 (594)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=1.9e-11  Score=130.13  Aligned_cols=105  Identities=18%  Similarity=0.124  Sum_probs=91.9

Q ss_pred             CEEEcccC-CCCCCCCccccCCCCCCEEEccc-CCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecc
Q 044236          121 ELLDMSSN-FLFGAIPSGISRLVRLQTLTMDT-NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMS  198 (747)
Q Consensus       121 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  198 (747)
                      ..++++++ .|++ +|. |..+++|+.|+|++ |.|++..|..|++|++|+.|+|++|+|++..|..|.+|++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35789988 8864 787 99999999999996 99999888999999999999999999999999999999999999999


Q ss_pred             cCccccCCCCCCCCCcCCEEEccCCCCCC
Q 044236          199 NNELSGKLPDMSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       199 ~N~l~~~~p~~~~l~~L~~L~L~~N~l~~  227 (747)
                      +|+|++.++.+.....|+.|+|++|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccC
Confidence            99999877764443349999999888763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.23  E-value=1.8e-10  Score=124.55  Aligned_cols=199  Identities=11%  Similarity=0.154  Sum_probs=161.3

Q ss_pred             ccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCC
Q 044236           88 TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN  167 (747)
Q Consensus        88 ~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~  167 (747)
                      ..|.+|.+|+.++|..|++...-...|. ..+|+.+.|..| +...-...|.++++|+.|.|..| ++..-...|.+ .+
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~  249 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG  249 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence            4689999999999999999776666676 589999999854 77777889999999999999875 56556677877 89


Q ss_pred             CCEEEccCCcCCCCCchhhcCCccCcEEecccCcccc----CCC--CCCCCCcCCEEEccCCCCCC---CCCCCCCCcce
Q 044236          168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSG----KLP--DMSALTSLHVLDLRENKLDS---GLPLMPKGLVT  238 (747)
Q Consensus       168 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~----~~p--~~~~l~~L~~L~L~~N~l~~---~~~~~~~~L~~  238 (747)
                      |+.+.| .|.++..-+..|.++++|+.+.+.+|.+..    .++  .|.++.+|+.++|.++ +..   ..+....+|+.
T Consensus       250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~  327 (401)
T 4fdw_A          250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQ  327 (401)
T ss_dssp             CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCE
T ss_pred             ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccE
Confidence            999999 455766667899999999999999988751    133  4889999999999854 442   22333578999


Q ss_pred             eecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCC-ccceeecccccC
Q 044236          239 VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP-NISYLHLASNML  294 (747)
Q Consensus       239 L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l  294 (747)
                      +.|..| ++..-+.+|.++ +|+.|++++|.+..+.+..|..++ ++..|.+..|.+
T Consensus       328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            999665 776778899999 999999999999999999998885 788888877654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.23  E-value=2.4e-13  Score=156.02  Aligned_cols=228  Identities=14%  Similarity=0.069  Sum_probs=151.0

Q ss_pred             CCCCCCCCCcc-CC--CcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCC------------------
Q 044236           71 PIPNQTLSESF-SI--DSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF------------------  129 (747)
Q Consensus        71 ~~~~~~l~~~~-~~--~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~------------------  129 (747)
                      .+..++++.+. .+  ..+...+.++++|++|+|++|...+.+|..+.++++|+.|+++.+.                  
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~  264 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC  264 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence            34445665543 11  2233334567899999998883333377777888888888765542                  


Q ss_pred             --------CC----CCCCccccCCCCCCEEEcccCCCCCCC-cccccCCCCCCEEEccCCcCCC-CCchhhcCCccCcEE
Q 044236          130 --------LF----GAIPSGISRLVRLQTLTMDTNFFDDNV-PDWWDSLSNLTVLSLKSNQLKG-QFPSSICRIATLTDI  195 (747)
Q Consensus       130 --------l~----~~~p~~~~~l~~L~~L~L~~N~~~~~~-p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L  195 (747)
                              +.    +.+|..+..+++|++|+|++|.+++.. +..+..+++|+.|++++| ++. .++.....+++|+.|
T Consensus       265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence                    11    123444456789999999999976543 233678999999999988 432 223333468899999


Q ss_pred             eccc---------CccccCC-CCC-CCCCcCCEEEccCCCCCCCCCC----CCCCcceeecC--C----CcCcc-----c
Q 044236          196 AMSN---------NELSGKL-PDM-SALTSLHVLDLRENKLDSGLPL----MPKGLVTVLLS--R----NLFSG-----A  249 (747)
Q Consensus       196 ~l~~---------N~l~~~~-p~~-~~l~~L~~L~L~~N~l~~~~~~----~~~~L~~L~ls--~----N~l~~-----~  249 (747)
                      ++++         |.+++.. ..+ ..+++|+.|+++.|.++...+.    ..++|+.|+++  +    |.++.     .
T Consensus       344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~  423 (594)
T 2p1m_B          344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG  423 (594)
T ss_dssp             EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred             EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence            9843         4444321 112 2478899999988888753221    24679999998  4    66663     2


Q ss_pred             CchhhcCCcccCeeecccCcCcccCCcccCC-CCccceeecccccCccccCc
Q 044236          250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFS-LPNISYLHLASNMLSGTLPK  300 (747)
Q Consensus       250 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~l~~N~l~g~ip~  300 (747)
                      ++..+..+++|+.|+|++ .+++.....+.. +++|+.|+|++|.+++..+.
T Consensus       424 ~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~  474 (594)
T 2p1m_B          424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH  474 (594)
T ss_dssp             HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred             HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence            233467789999999977 676655555554 88999999999998765443

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.21  E-value=2.8e-11  Score=123.46  Aligned_cols=147  Identities=15%  Similarity=0.071  Sum_probs=111.6

Q ss_pred             HHHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCC
Q 044236          435 LKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       435 l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~  513 (747)
                      +.....+|.....++.|+.+.||++... ++.+++|............+.+|+++++.+. |..+.++++++...     
T Consensus         9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~-----   82 (263)
T 3tm0_A            9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHD-----   82 (263)
T ss_dssp             HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEET-----
T ss_pred             HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecC-----
Confidence            3455667888888899999999999864 6789999987432223346888999999884 67788888887653     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV--------------------------  567 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--------------------------  567 (747)
                         ...++||||++|.+|.+.+..        ......++.+++++|+.||+..                          
T Consensus        83 ---~~~~lv~e~i~G~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (263)
T 3tm0_A           83 ---GWSNLLMSEADGVLCSEEYED--------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLA  151 (263)
T ss_dssp             ---TEEEEEEECCSSEEHHHHCCT--------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCS
T ss_pred             ---CceEEEEEecCCeehhhccCC--------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccc
Confidence               368999999999988765321        1123467889999999999811                          


Q ss_pred             ------------------------------CCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          568 ------------------------------ISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       568 ------------------------------~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                                                    ...++|+|+++.||+++.+..+.|.||+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          152 DVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             CCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                                          1347999999999999876667799999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=1.2e-13  Score=148.22  Aligned_cols=167  Identities=19%  Similarity=0.193  Sum_probs=83.2

Q ss_pred             CCCCCEEEeeccCCCCCCChhcc-----CCCCCCEEEcccCCCCCCCCccc-cCCCCCCEEEcccCCCCCCCcccc----
Q 044236           93 LTTLRVLSLVSLGIWGPLPDKIH-----RLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWW----  162 (747)
Q Consensus        93 l~~L~~L~L~~n~i~~~~p~~~~-----~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~~~~~~p~~~----  162 (747)
                      +++|+.|+|++|.|+......|.     +.++|+.|||++|.++..-...+ ..+++|+.|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            34677777777776543333332     22567777777776643322222 234566667777766654333333    


Q ss_pred             -cCCCCCCEEEccCCcCCC----CCchhhcCCccCcEEecccCccccCC----C-CCCCCCcCCEEEccCCCCCCCCCCC
Q 044236          163 -DSLSNLTVLSLKSNQLKG----QFPSSICRIATLTDIAMSNNELSGKL----P-DMSALTSLHVLDLRENKLDSGLPLM  232 (747)
Q Consensus       163 -~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~----p-~~~~l~~L~~L~L~~N~l~~~~~~~  232 (747)
                       ...++|+.|+|++|.|+.    .++..+..+++|+.|+|++|.|+..-    + .+...++|+.|+|++|.|+..-   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g---  227 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA---  227 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH---
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH---
Confidence             234566666666666643    12333345555666666665554211    1 1233334444444444432100   


Q ss_pred             CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCc
Q 044236          233 PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS  276 (747)
Q Consensus       233 ~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  276 (747)
                                    ...++..+...++|+.|+|++|.|+.....
T Consensus       228 --------------~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~  257 (372)
T 3un9_A          228 --------------ALALARAAREHPSLELLHLYFNELSSEGRQ  257 (372)
T ss_dssp             --------------HHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred             --------------HHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence                          001233344456667777777766554433

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.12  E-value=6.9e-11  Score=120.20  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=98.4

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCc--ceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL--VSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nI--v~l~g~~~~~~~~~~~~~~  517 (747)
                      .++.+..+.+.|..+.||++...+|+.+++|.....   ....+.+|+++++.+++.++  .+++++....        .
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~--------~   88 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEA--------G   88 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS--------S
T ss_pred             CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCC--------C
Confidence            344443333466679999998777888999987643   22456789999998865454  4577766542        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------------------------------
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV------------------------------  567 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------------------------------  567 (747)
                      ..++||||+++.++.  ...      .+   ...++.++++.|+.||+..                              
T Consensus        89 ~~~~v~e~i~G~~l~--~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (264)
T 1nd4_A           89 RDWLLLGEVPGQDLL--SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDD  157 (264)
T ss_dssp             CEEEEEECCSSEETT--TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTS
T ss_pred             CCEEEEEecCCcccC--cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchh
Confidence            579999999998884  221      11   2357788888888888732                              


Q ss_pred             -------------------------CCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          568 -------------------------ISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       568 -------------------------~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                                               ...++|+|++|.||+++.+..++|.|||.+.
T Consensus       158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          158 LDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             CCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                                     1128999999999999887777899999974

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.10  E-value=7.4e-13  Score=141.95  Aligned_cols=164  Identities=21%  Similarity=0.209  Sum_probs=104.8

Q ss_pred             CCCCCEEEcccCCCCCCCCccccC-----CCCCCEEEcccCCCCCCCcccc-cCCCCCCEEEccCCcCCCCCchhhc---
Q 044236          117 LSSLELLDMSSNFLFGAIPSGISR-----LVRLQTLTMDTNFFDDNVPDWW-DSLSNLTVLSLKSNQLKGQFPSSIC---  187 (747)
Q Consensus       117 L~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~~~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~---  187 (747)
                      +++|+.|+|++|.++......+..     ..+|+.|+|++|.++......+ ..+++|+.|+|++|.++......++   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            457888899888886544333332     2678888888888764322222 3456788888888877644333332   


Q ss_pred             --CCccCcEEecccCccccC----CC-CCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCccc
Q 044236          188 --RIATLTDIAMSNNELSGK----LP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQL  260 (747)
Q Consensus       188 --~l~~L~~L~l~~N~l~~~----~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L  260 (747)
                        ..++|+.|+|++|.|+..    ++ .+..+++|++|+|++|.|+..-                 ...++..+...++|
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g-----------------~~~L~~~L~~~~~L  213 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG-----------------LELLAAQLDRNRQL  213 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH-----------------HHHHHHHGGGCSCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH-----------------HHHHHHHHhcCCCc
Confidence              346677777777776531    11 1234555666666666543100                 00235667778899


Q ss_pred             CeeecccCcCcccC----CcccCCCCccceeecccccCccc
Q 044236          261 QHLDLSFNDLSGIP----PSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       261 ~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      +.|+|++|.|+...    ...+...++|++|+|++|.|+..
T Consensus       214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            99999999998643    33445678999999999998744

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.95  E-value=2e-09  Score=114.96  Aligned_cols=146  Identities=12%  Similarity=0.181  Sum_probs=105.8

Q ss_pred             ccccccCCCCeeEEEEEeCCCcEEEEEEee--ccc-hhcHHHHHHHHHHHhcCC--CCCcceeeeeeeccCCCCCCCCce
Q 044236          444 SLSFMGEGSRGKLYKGRLENGTYVAIRSLT--FLK-KYSIQNLKVRLDFLSKLQ--HPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~--~~~-~~~~~~~~~E~~~l~~l~--H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ..+.++.|.++.||+....+ ..+++|+..  ... ......+.+|.++++.++  +..+.++++++.+..     ....
T Consensus        42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~-----~~g~  115 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDES-----VIGR  115 (359)
T ss_dssp             EEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTT-----TTSS
T ss_pred             eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCC-----ccCC
Confidence            35678999999999998765 467778765  222 122356788999999887  456788888876532     1135


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-------------------------------
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV-------------------------------  567 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-------------------------------  567 (747)
                      .++||||+++..+.+...     ..++...+..++.++++.|+.||+..                               
T Consensus       116 ~~~vme~v~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (359)
T 3dxp_A          116 AFYIMEFVSGRVLWDQSL-----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSE  190 (359)
T ss_dssp             CEEEEECCCCBCCCCTTC-----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEecCCeecCCCcc-----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcC
Confidence            789999999988754221     23678888899999999999999731                               


Q ss_pred             ------------------------CCCcccCCCCCCceeecCCCc--EEEecccccccc
Q 044236          568 ------------------------ISGSFSNRLTTNNILLDEHRI--AKLSDYGISIIM  600 (747)
Q Consensus       568 ------------------------~~~ivHrDlk~~NILld~~~~--~kl~DFGla~~~  600 (747)
                                              ...++|+|+++.|||++.++.  +.|.||+.+..-
T Consensus       191 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          191 TESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             CSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             CcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence                                    246899999999999987653  689999998653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=7.9e-10  Score=117.44  Aligned_cols=110  Identities=13%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             ccCCCCCCEEEcccCCC---------CCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCch
Q 044236          114 IHRLSSLELLDMSSNFL---------FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPS  184 (747)
Q Consensus       114 ~~~L~~L~~L~Ls~N~l---------~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  184 (747)
                      +.++++|+.|.+..+..         .+.++..+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.++.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence            44556666666654422         1124444556667777777665211 1222 32 66777777776665433223


Q ss_pred             hhc--CCccCcEEeccc--CccccC--C----CCC--CCCCcCCEEEccCCCCC
Q 044236          185 SIC--RIATLTDIAMSN--NELSGK--L----PDM--SALTSLHVLDLRENKLD  226 (747)
Q Consensus       185 ~~~--~l~~L~~L~l~~--N~l~~~--~----p~~--~~l~~L~~L~L~~N~l~  226 (747)
                      .++  .+++|+.|+|+.  |...+.  +    +.+  ..+++|+.|+|++|.+.
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~  265 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ  265 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence            333  566777776642  221111  1    111  23566666666666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=1e-08  Score=108.76  Aligned_cols=186  Identities=16%  Similarity=0.164  Sum_probs=116.7

Q ss_pred             ccccccCCCCCCEEEeeccCC---------CCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCC
Q 044236           86 FVTTLTRLTTLRVLSLVSLGI---------WGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDD  156 (747)
Q Consensus        86 ~~~~l~~l~~L~~L~L~~n~i---------~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~  156 (747)
                      +..++.++++|+.|.+..+..         .+.++..+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.++.
T Consensus       131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPD  207 (362)
T ss_dssp             HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCH
T ss_pred             HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCCh
Confidence            344567888999999866533         1235566788899999999988422 2343 43 8899999999888764


Q ss_pred             CCccccc--CCCCCCEEEccC--CcCCCC-----Cchhh--cCCccCcEEecccCccccCCC----CCCCCCcCCEEEcc
Q 044236          157 NVPDWWD--SLSNLTVLSLKS--NQLKGQ-----FPSSI--CRIATLTDIAMSNNELSGKLP----DMSALTSLHVLDLR  221 (747)
Q Consensus       157 ~~p~~~~--~l~~L~~L~l~~--N~l~~~-----~p~~~--~~l~~L~~L~l~~N~l~~~~p----~~~~l~~L~~L~L~  221 (747)
                      .....+.  .+++|+.|+|+.  |...+.     +...+  ..+++|+.|+|.+|.+....+    ....+++|++|+|+
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            3333443  789999999863  322211     11122  257899999999998874322    12346778888887


Q ss_pred             CCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCC-CCccceeeccccc
Q 044236          222 ENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS-LPNISYLHLASNM  293 (747)
Q Consensus       222 ~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~l~~N~  293 (747)
                      .|.+...-.                 ..++..+..+++|+.|+|++|.|+...-..+.. +  ...++++.|+
T Consensus       288 ~n~L~d~G~-----------------~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          288 AGVLTDEGA-----------------RLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SSCCBHHHH-----------------HHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCChHHH-----------------HHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            776643100                 012233345677888888887776543222222 1  2456777665

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.62  E-value=9.1e-09  Score=107.15  Aligned_cols=140  Identities=17%  Similarity=0.185  Sum_probs=96.1

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCC--cceeeeeeeccCCCCCCCCceEEE
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPH--LVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~n--Iv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      .+.++.|.+..||+..    ..+++|.....  .....+.+|.++|+.+. +..  +.+.+++....+     .....|+
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~-----~~~~~~~   93 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSE-----TYQMSFA   93 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCS-----SCSCSCE
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCC-----CCCcceE
Confidence            4568999999999863    45778875422  33467889999998874 332  233443332211     1123589


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC----------------------------------
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV----------------------------------  567 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~----------------------------------  567 (747)
                      ||||++|..+......     .++..++..++.++++.++.||+..                                  
T Consensus        94 vm~~i~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
T 3sg8_A           94 GFTKIKGVPLTPLLLN-----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGP  168 (304)
T ss_dssp             EEECCCCEECCHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHH
T ss_pred             EEcccCCeECCccccc-----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcc
Confidence            9999999887653221     2566677778888888888888511                                  


Q ss_pred             ---------------------CCCcccCCCCCCceeecC--CCcEEEecccccccc
Q 044236          568 ---------------------ISGSFSNRLTTNNILLDE--HRIAKLSDYGISIIM  600 (747)
Q Consensus       568 ---------------------~~~ivHrDlk~~NILld~--~~~~kl~DFGla~~~  600 (747)
                                           .+.++|+|+++.||+++.  ...+.|.||+.+...
T Consensus       169 ~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          169 QMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             HHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             cHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence                                 134799999999999998  556889999998654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.49  E-value=1.3e-06  Score=94.45  Aligned_cols=123  Identities=15%  Similarity=0.072  Sum_probs=71.5

Q ss_pred             hhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCee
Q 044236          184 SSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHL  263 (747)
Q Consensus       184 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  263 (747)
                      ..|.++..|+.+.+..+...-....+..+..|+.+.+..+.+.........+|+.+.+..+ ++..-...|.++++|+.+
T Consensus       247 ~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            3455566666666655543322223555566666665555443333334456777777654 554555677777888888


Q ss_pred             ecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCC
Q 044236          264 DLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       264 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~  309 (747)
                      +|..+ ++.+...+|.++.+|+.+.+..| +.-.-...|..+.+|+
T Consensus       326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            87643 77777777778888888877655 4422223444444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=1.6e-08  Score=101.85  Aligned_cols=65  Identities=25%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CCCCCCEEEcccCCCCC--CCCccccCCCCCCEEEcccCCCCCCCcccccCCC--CCCEEEccCCcCCCCC
Q 044236          116 RLSSLELLDMSSNFLFG--AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLS--NLTVLSLKSNQLKGQF  182 (747)
Q Consensus       116 ~L~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~--~L~~L~l~~N~l~~~~  182 (747)
                      ++++|+.|+||+|.|++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|+.|+|++|.+++.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence            44555555555555554  3334444555555555555555442  1222222  4444444444444433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=4.6e-08  Score=93.64  Aligned_cols=116  Identities=13%  Similarity=0.158  Sum_probs=73.3

Q ss_pred             cccccCCCCCCEEEeecc-CCCCC----CChhccCCCCCCEEEcccCCCCCC----CCccccCCCCCCEEEcccCCCCCC
Q 044236           87 VTTLTRLTTLRVLSLVSL-GIWGP----LPDKIHRLSSLELLDMSSNFLFGA----IPSGISRLVRLQTLTMDTNFFDDN  157 (747)
Q Consensus        87 ~~~l~~l~~L~~L~L~~n-~i~~~----~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~~~~~  157 (747)
                      ...+...++|+.|+|++| .|...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.++..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345677788888888888 77432    445566677888888888887532    334455556777788877777643


Q ss_pred             ----CcccccCCCCCCEEEc--cCCcCCCC----CchhhcCCccCcEEecccCcc
Q 044236          158 ----VPDWWDSLSNLTVLSL--KSNQLKGQ----FPSSICRIATLTDIAMSNNEL  202 (747)
Q Consensus       158 ----~p~~~~~l~~L~~L~l--~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l  202 (747)
                          +...+...++|+.|+|  ++|.|...    +...+...++|+.|+|++|.+
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                3445556667777777  66776532    223333445566666665555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=2.5e-07  Score=93.18  Aligned_cols=80  Identities=20%  Similarity=0.338  Sum_probs=67.2

Q ss_pred             cCCCCCCEEEeeccCCCC--CCChhccCCCCCCEEEcccCCCCCCCCccccCCC--CCCEEEcccCCCCCCCcc------
Q 044236           91 TRLTTLRVLSLVSLGIWG--PLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLV--RLQTLTMDTNFFDDNVPD------  160 (747)
Q Consensus        91 ~~l~~L~~L~L~~n~i~~--~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~~~~~~p~------  160 (747)
                      .++++|+.|+|++|.|.+  .+|..+..+++|+.|+|++|.|.+.  ..+..+.  +|++|+|++|.+.+.+|+      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            578999999999999998  5678888999999999999999875  3344444  999999999999886663      


Q ss_pred             -cccCCCCCCEEE
Q 044236          161 -WWDSLSNLTVLS  172 (747)
Q Consensus       161 -~~~~l~~L~~L~  172 (747)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             367788888886

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.21  E-value=1.6e-05  Score=85.73  Aligned_cols=216  Identities=12%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             ccccCCCCCCEEEeeccC---CCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccC
Q 044236           88 TTLTRLTTLRVLSLVSLG---IWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDS  164 (747)
Q Consensus        88 ~~l~~l~~L~~L~L~~n~---i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~  164 (747)
                      .+|.++++|+.+.+..|.   +...-..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|..
T Consensus        81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~  158 (394)
T 4gt6_A           81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSY  158 (394)
T ss_dssp             TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceec
Confidence            357778888888876653   43333445666666666666543 33344445666666666666432 22222334444


Q ss_pred             CCCCCEEEccCCc---------------------CCCCCchhhcCCccCcEEecccCccc--------------------
Q 044236          165 LSNLTVLSLKSNQ---------------------LKGQFPSSICRIATLTDIAMSNNELS--------------------  203 (747)
Q Consensus       165 l~~L~~L~l~~N~---------------------l~~~~p~~~~~l~~L~~L~l~~N~l~--------------------  203 (747)
                      +.+|+.+.+..+-                     +.......|.++..|.......+...                    
T Consensus       159 c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (394)
T 4gt6_A          159 CYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY  238 (394)
T ss_dssp             CTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC
T ss_pred             ccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccccccc
Confidence            5555555443321                     00011223334444443332211100                    


Q ss_pred             --------cCCC---------CCCCCCcCCEEEccCCCCC--CCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeee
Q 044236          204 --------GKLP---------DMSALTSLHVLDLRENKLD--SGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLD  264 (747)
Q Consensus       204 --------~~~p---------~~~~l~~L~~L~L~~N~l~--~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  264 (747)
                              -.+|         .|.++.+|+.+.+.++...  .........|+.+.+. +.++..-...|.++.+|+.++
T Consensus       239 ~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~  317 (394)
T 4gt6_A          239 PSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSID  317 (394)
T ss_dssp             CTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEE
T ss_pred             ccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEE
Confidence                    0112         1556677888877654321  1222234567777765 345545556777777777777


Q ss_pred             cccCcCcccCCcccCCCCccceeecccccCccccC-cCCCCCCCCC
Q 044236          265 LSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP-KDLSCGSKLD  309 (747)
Q Consensus       265 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~l~  309 (747)
                      |..+ ++.+...+|.++.+|+.+.+..+ ++ .|+ ..|..+.+|.
T Consensus       318 lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          318 IPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALN  360 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCC
T ss_pred             eCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCC
Confidence            7654 66666777777777777777544 33 232 3444445554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=1.6e-07  Score=89.83  Aligned_cols=116  Identities=12%  Similarity=0.154  Sum_probs=79.2

Q ss_pred             CChhccCCCCCCEEEcccC-CCCC----CCCccccCCCCCCEEEcccCCCCCC----CcccccCCCCCCEEEccCCcCCC
Q 044236          110 LPDKIHRLSSLELLDMSSN-FLFG----AIPSGISRLVRLQTLTMDTNFFDDN----VPDWWDSLSNLTVLSLKSNQLKG  180 (747)
Q Consensus       110 ~p~~~~~L~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~N~~~~~----~p~~~~~l~~L~~L~l~~N~l~~  180 (747)
                      +...+...++|++|+|++| .+..    .+...+...++|++|+|++|.+...    +...+...++|+.|+|++|.|..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4456778899999999999 8753    2445667778899999999988653    23445566788899999888874


Q ss_pred             C----CchhhcCCccCcEEec--ccCccccCC----C-CCCCCCcCCEEEccCCCC
Q 044236          181 Q----FPSSICRIATLTDIAM--SNNELSGKL----P-DMSALTSLHVLDLRENKL  225 (747)
Q Consensus       181 ~----~p~~~~~l~~L~~L~l--~~N~l~~~~----p-~~~~l~~L~~L~L~~N~l  225 (747)
                      .    +...+...++|+.|+|  ++|.+...-    . .+...++|+.|+|++|.+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            3    3455666677888888  667775321    1 133345666666666654

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.18  E-value=6.3e-06  Score=85.52  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=89.3

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCC---CcceeeeeeeccCCCCCCCCceEEE
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHP---HLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~---nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      .+.++.|....||+.    |..+++|.-.  .......+.+|.++|+.+.+.   .+.+.+.++...       ....++
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~-------~g~~~~   90 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRS-------DGNPFV   90 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECT-------TSCEEE
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccC-------CCceEE
Confidence            456888999999987    4567788743  223346788999999998753   244555555321       235689


Q ss_pred             EEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----------------------------------
Q 044236          522 VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS-----------------------------------  566 (747)
Q Consensus       522 v~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----------------------------------  566 (747)
                      ||||++|..+.+....     .++...+..++.++++.|+.||+.                                   
T Consensus        91 v~e~i~G~~l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~  165 (306)
T 3tdw_A           91 GYRKVQGQILGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLD  165 (306)
T ss_dssp             EEECCCSEECHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSC
T ss_pred             EEeccCCeECchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999877652111     123344444444444444444431                                   


Q ss_pred             ----------------------CCCCcccCCCCCCceeecC---CCc-EEEeccccccc
Q 044236          567 ----------------------VISGSFSNRLTTNNILLDE---HRI-AKLSDYGISII  599 (747)
Q Consensus       567 ----------------------~~~~ivHrDlk~~NILld~---~~~-~kl~DFGla~~  599 (747)
                                            ..+.++|+|+++.||+++.   ++. +.|.||+.+..
T Consensus       166 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          166 ESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             hhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                                  1235699999999999987   455 58999998753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.12  E-value=1.6e-05  Score=85.67  Aligned_cols=197  Identities=13%  Similarity=0.122  Sum_probs=141.6

Q ss_pred             ccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCC-------------
Q 044236           88 TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFF-------------  154 (747)
Q Consensus        88 ~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~-------------  154 (747)
                      ..|.++++|+.+.|.++- ...-...|.++.+|+.+++..| +...-...|.++..|+.+.+..+..             
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~  233 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK  233 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence            468889999999997653 3445567889999999999866 4445555677777666666544321             


Q ss_pred             --------CCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCC
Q 044236          155 --------DDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLD  226 (747)
Q Consensus       155 --------~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~  226 (747)
                              +..-...|..+.+|+.+.+..+..+ .....|.++..|+.+....+.+..  ..+..+.+|+.+.+.++ +.
T Consensus       234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~  309 (394)
T 4fs7_A          234 NIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VK  309 (394)
T ss_dssp             EEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CC
T ss_pred             eEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc--ccccccccccccccccc-cc
Confidence                    1112234567778888888776443 445677888889888877654321  23677889999998765 32


Q ss_pred             ---CCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccc
Q 044236          227 ---SGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN  292 (747)
Q Consensus       227 ---~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  292 (747)
                         ........+|+.+.|..+ ++..-..+|.++++|+.++|..| ++.+...+|.++++|+.+++..+
T Consensus       310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence               222333567999999754 66666789999999999999877 88889999999999999998765

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.08  E-value=1e-05  Score=82.21  Aligned_cols=134  Identities=17%  Similarity=0.107  Sum_probs=88.7

Q ss_pred             cccCCCCe-eEEEEEeC-CCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          447 FMGEGSRG-KLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       447 ~iG~G~~g-~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      .+..|..| .||+.... ++..+.+|+-..   .....+.+|...|+.+. +--+-++++++...        ...++||
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~--------~~~~lvm   99 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTP--------DDAWLLT   99 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEET--------TEEEEEE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEEC--------CeEEEEE
Confidence            45556665 69988753 466788887653   23456788999988774 22356677777653        3679999


Q ss_pred             eccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-------------------------------------
Q 044236          524 EYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS-------------------------------------  566 (747)
Q Consensus       524 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-------------------------------------  566 (747)
                      |++++.++.+.....       ......+..++++.|+-||+.                                     
T Consensus       100 e~l~G~~~~~~~~~~-------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (272)
T 4gkh_A          100 TAIPGKTAFQVLEEY-------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERN  172 (272)
T ss_dssp             ECCCSEEHHHHHHHC-------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGT
T ss_pred             EeeCCccccccccCC-------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhcccccc
Confidence            999987765543211       112233444555555555531                                     


Q ss_pred             ------------------CCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          567 ------------------VISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       567 ------------------~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                                        ....++|+|+.+.|||++.++.+-|.||+.+.
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          173 GWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             TCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             chHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                              11237899999999999988777899999874

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.95  E-value=1e-05  Score=85.85  Aligned_cols=84  Identities=7%  Similarity=-0.011  Sum_probs=54.7

Q ss_pred             cccc-cCCCCeeEEEEEeC-------CCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCC-C--CCcceeeeeeeccCC
Q 044236          445 LSFM-GEGSRGKLYKGRLE-------NGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQ-H--PHLVSLLGHCIESGS  510 (747)
Q Consensus       445 ~~~i-G~G~~g~Vy~~~~~-------~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~-H--~nIv~l~g~~~~~~~  510 (747)
                      .+.| +.|....+|+....       +++.+++|.-....   ......+.+|..+++.+. +  -.+.++++++...+ 
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~-  103 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGD-  103 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSST-
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCC-
Confidence            3567 88989999998754       25678888765322   111245678888888774 2  24666777664421 


Q ss_pred             CCCCCCceEEEEEeccCCCCccc
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRA  533 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~  533 (747)
                          .....++||||+++..+.+
T Consensus       104 ----~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          104 ----VLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             ----TTSSCEEEEECCCCBCCCB
T ss_pred             ----ccCCceEEEEecCCCChhh
Confidence                0124589999999877764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.94  E-value=0.00016  Score=77.81  Aligned_cols=215  Identities=11%  Similarity=0.163  Sum_probs=144.1

Q ss_pred             cccCCC-CCCEEEeeccCCCCCCChhccCCCCCCEEEcccCC---CCCCCCccccCCCCCCEEEcccCCCCCCCcccccC
Q 044236           89 TLTRLT-TLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF---LFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDS  164 (747)
Q Consensus        89 ~l~~l~-~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~  164 (747)
                      +|.++. .|+.+.|.+ .++..-..+|.++++|+.+.++.|.   ++..-..+|.++.+|+.+.+..+ ++......|..
T Consensus        58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            567774 599999975 4666667889999999999999875   55455678999999999988765 45555678899


Q ss_pred             CCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccC--------------CC---------CCCCCCcCCEEEcc
Q 044236          165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK--------------LP---------DMSALTSLHVLDLR  221 (747)
Q Consensus       165 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--------------~p---------~~~~l~~L~~L~L~  221 (747)
                      +.+|+.+.+..+ +.......|.++..|+.+.+..+ +...              +|         .+..+.+|......
T Consensus       136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~  213 (394)
T 4gt6_A          136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSD  213 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEEC
T ss_pred             hcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccc
Confidence            999999999754 33334466777888888777643 1111              11         12333444443332


Q ss_pred             CCCCCC----------------------------CCCC-----------CCCCcceeecCCCcCcccCchhhcCCcccCe
Q 044236          222 ENKLDS----------------------------GLPL-----------MPKGLVTVLLSRNLFSGAIPQQFGELAQLQH  262 (747)
Q Consensus       222 ~N~l~~----------------------------~~~~-----------~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~  262 (747)
                      .+....                            .+|.           ....|+.+.+..+..+ .-...|.++++|+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~  292 (394)
T 4gt6_A          214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQD  292 (394)
T ss_dssp             CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCE
T ss_pred             ccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCccccccccccc
Confidence            221100                            0121           1245677777655433 45678899999999


Q ss_pred             eecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCC
Q 044236          263 LDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDS  310 (747)
Q Consensus       263 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~  310 (747)
                      +.+. +.++.+...+|.++.+|+.+.|..| ++-.-...|..+.+|+.
T Consensus       293 i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          293 IEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             EECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             ccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            9996 6688899999999999999999765 44222345666666653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.84  E-value=0.00095  Score=71.16  Aligned_cols=100  Identities=15%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             CCCCCcCCEEEccCCC--CCCCCCCCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccce
Q 044236          209 MSALTSLHVLDLRENK--LDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISY  286 (747)
Q Consensus       209 ~~~l~~L~~L~L~~N~--l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  286 (747)
                      +.++..|+.+.+..+-  +..........|..+.+..+ +...-...|.++++|+.+.+.++.++.+...+|.++.+|+.
T Consensus       236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             ccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            4445556666654431  11111222345666666543 44444567888888888888888888888888888888888


Q ss_pred             eecccccCccccC-cCCCCCCCCCCC
Q 044236          287 LHLASNMLSGTLP-KDLSCGSKLDSI  311 (747)
Q Consensus       287 L~l~~N~l~g~ip-~~~~~~~~l~~~  311 (747)
                      +.|..+ +. .|+ ..|..+..|..+
T Consensus       315 i~lp~~-l~-~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          315 VTLPTA-LK-TIQVYAFKNCKALSTI  338 (379)
T ss_dssp             EECCTT-CC-EECTTTTTTCTTCCCC
T ss_pred             EEcCcc-cc-EEHHHHhhCCCCCCEE
Confidence            888654 43 333 345555556543

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.78  E-value=8.7e-05  Score=79.96  Aligned_cols=75  Identities=16%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             cccccCCCCeeEEEEEeC-CCcEEEEEEeeccch-------hcHHHHHHHHHHHhcCCC--CCcc-eeeeeeeccCCCCC
Q 044236          445 LSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK-------YSIQNLKVRLDFLSKLQH--PHLV-SLLGHCIESGSQDD  513 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-------~~~~~~~~E~~~l~~l~H--~nIv-~l~g~~~~~~~~~~  513 (747)
                      .+.||.|.++.||+++.. +++.++||.......       .....+..|.++++.+..  +..+ +++.+..       
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d~-------  107 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDT-------  107 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEET-------
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEcC-------
Confidence            567999999999999753 467899997642211       123456778888887742  3333 4554321       


Q ss_pred             CCCceEEEEEeccCCC
Q 044236          514 SNTNKVFLVYEYIPNG  529 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~g  529 (747)
                         ...++||||+++.
T Consensus       108 ---~~~~lvmE~l~g~  120 (397)
T 2olc_A          108 ---EMAVTVMEDLSHL  120 (397)
T ss_dssp             ---TTTEEEECCCTTS
T ss_pred             ---CccEEEEEeCCCc
Confidence               1348999999763

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.59  E-value=0.00018  Score=73.69  Aligned_cols=76  Identities=17%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             ccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCC---CCcceeeeeeeccCCCCCCCCceEE
Q 044236          444 SLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH---PHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H---~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      .++.+|.|..+.||+.+..+|+.|.||+-..........|.+|.+.|+.|.-   --+.+.+++.            .-+
T Consensus        19 ~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~------------~~~   86 (288)
T 3f7w_A           19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD------------DRT   86 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE------------TTE
T ss_pred             EEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc------------Cce
Confidence            3567899999999999999999999998654433334567889998887742   1234445432            137


Q ss_pred             EEEeccCCCCc
Q 044236          521 LVYEYIPNGSY  531 (747)
Q Consensus       521 lv~Ey~~~gsL  531 (747)
                      +||||++.+..
T Consensus        87 lv~e~l~~~~~   97 (288)
T 3f7w_A           87 LAMEWVDERPP   97 (288)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEEeecccCC
Confidence            99999987654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.56  E-value=0.00023  Score=74.74  Aligned_cols=147  Identities=14%  Similarity=0.206  Sum_probs=79.2

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCC--CCcceeeeeeeccCCCCCCCCceEEEE
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH--PHLVSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H--~nIv~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      .+.|+.|..+.||+....+|. +++|+....    ...+..|.++++.+..  -.+.+++....  +..........++|
T Consensus        37 ~~~l~gG~~n~~~~v~~~~~~-~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~--g~~~~~~~~~~~~l  109 (346)
T 2q83_A           37 IDVIQGNQMALVWKVHTDSGA-VCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKK--GSLYSKHGSFLFVV  109 (346)
T ss_dssp             EEECC----CEEEEEEETTEE-EEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTT--SCSCEEETTEEEEE
T ss_pred             eeeccccccCcEEEEEeCCCC-EEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCC--CCEEEEECCEEEEE
Confidence            345666788999999876654 888988642    2333445555554431  12333332100  00000002367899


Q ss_pred             EeccCCCCccc--------------ccccC-C----CC------CCCCHHHHH---------------------------
Q 044236          523 YEYIPNGSYRA--------------HLSEN-C----PE------NVLKWSDRL---------------------------  550 (747)
Q Consensus       523 ~Ey~~~gsL~~--------------~l~~~-~----~~------~~l~~~~~~---------------------------  550 (747)
                      |||++|..+..              .+|.. .    +.      ..-.|....                           
T Consensus       110 ~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  189 (346)
T 2q83_A          110 YDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYL  189 (346)
T ss_dssp             EECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             EEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            99999866530              11110 0    00      112343211                           


Q ss_pred             ----HHHHHHHHHHHHhhc----------CCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          551 ----AILIGVAKAVHFLHS----------SVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       551 ----~i~~~ia~gL~yLH~----------~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                          .+...+.+++.+|+.          .....++|+|+++.|||++.++.+.|.||+.+.
T Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          190 QEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence                011123446667763          123678999999999999888889999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.43  E-value=0.0014  Score=69.74  Aligned_cols=179  Identities=11%  Similarity=0.065  Sum_probs=113.4

Q ss_pred             ccccCCCCCCEEEeeccCCCC------------CCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCC
Q 044236           88 TTLTRLTTLRVLSLVSLGIWG------------PLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFD  155 (747)
Q Consensus        88 ~~l~~l~~L~~L~L~~n~i~~------------~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~  155 (747)
                      ..+.++.+|+.+.+..+....            .....+.....+..+.+..+. .......+....+|+.+.+..+ +.
T Consensus       152 ~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~  229 (379)
T 4h09_A          152 GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT  229 (379)
T ss_dssp             CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC
T ss_pred             chhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccccccccceeeeccc-ee
Confidence            356777778777776544321            122344455666666665432 3455566777888888888654 34


Q ss_pred             CCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCC-CCCCCCcCCEEEccCCCCCCCCCCCCC
Q 044236          156 DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLMPK  234 (747)
Q Consensus       156 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~  234 (747)
                      ......|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ +..... .|.++.+|+.+.+.++.++        
T Consensus       230 ~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~--------  299 (379)
T 4h09_A          230 TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE--------  299 (379)
T ss_dssp             EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC--------
T ss_pred             EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc--------
Confidence            444567778888888888765 55444567778888888888654 332222 3667777877777665443        


Q ss_pred             CcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccc
Q 044236          235 GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN  292 (747)
Q Consensus       235 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  292 (747)
                                   ..-...|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+
T Consensus       300 -------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          300 -------------TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             -------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             -------------eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence                         233456777777777777543 66666677777777777776544

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.38  E-value=0.00073  Score=69.75  Aligned_cols=138  Identities=12%  Similarity=0.076  Sum_probs=89.2

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC---CCCcceeeeeeeccCCCCCCCCceEEE
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ---HPHLVSLLGHCIESGSQDDSNTNKVFL  521 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~---H~nIv~l~g~~~~~~~~~~~~~~~~~l  521 (747)
                      .+.|+.|.+..+|+.... +..+++|.....   ....+.+|.+.|+.|.   ...+.+.++++...        ...++
T Consensus        41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~--------g~~~l  108 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ--------GHSFL  108 (312)
T ss_dssp             EEEECCSSSSEEEEEESS-SCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECS--------SEEEE
T ss_pred             eEEeCCccceeeeEEEEC-CCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecC--------CceEE
Confidence            467899999999999864 567788876532   3567888998888774   35577777776542        36899


Q ss_pred             EEeccCCCCccc-----------ccccCCC--C-----------------CCCCHHHHH---HHHHH-------------
Q 044236          522 VYEYIPNGSYRA-----------HLSENCP--E-----------------NVLKWSDRL---AILIG-------------  555 (747)
Q Consensus       522 v~Ey~~~gsL~~-----------~l~~~~~--~-----------------~~l~~~~~~---~i~~~-------------  555 (747)
                      ||||+++..+..           .||....  .                 -.-+|.+..   ++..+             
T Consensus       109 vme~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~  188 (312)
T 3jr1_A          109 LLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGN  188 (312)
T ss_dssp             EEECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSC
T ss_pred             EEEeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            999999886531           1222111  0                 012565432   11111             


Q ss_pred             ---HHHH-HHHhhc-CCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          556 ---VAKA-VHFLHS-SVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       556 ---ia~g-L~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                         +... ...|.. ...+.++|+|+.+.|++++.++ +.|.||.
T Consensus       189 ~~~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          189 IDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence               1111 233431 2236789999999999999887 8899984

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.35  E-value=7.6e-05  Score=69.54  Aligned_cols=83  Identities=13%  Similarity=0.059  Sum_probs=45.3

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCC-CCCCCCccccCC----CCCCEEEcccCC-CCCCCcccccCCCC
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNF-LFGAIPSGISRL----VRLQTLTMDTNF-FDDNVPDWWDSLSN  167 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-~~~~~p~~~~~l~~  167 (747)
                      .+|+.|||+++.|+..-=..+.++++|+.|+|++|. ++..-=..++.+    ++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357777777777654333345667777777777764 332222223333    246666666653 44322233455666


Q ss_pred             CCEEEccCC
Q 044236          168 LTVLSLKSN  176 (747)
Q Consensus       168 L~~L~l~~N  176 (747)
                      |+.|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.33  E-value=6.4e-05  Score=70.06  Aligned_cols=83  Identities=8%  Similarity=0.126  Sum_probs=45.8

Q ss_pred             CCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCC-CCCCCcccccCC----CCCCEEEccCCc-CCCCCchhhcCCcc
Q 044236          118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF-FDDNVPDWWDSL----SNLTVLSLKSNQ-LKGQFPSSICRIAT  191 (747)
Q Consensus       118 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-~~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~p~~~~~l~~  191 (747)
                      ..|+.||||++.++..--..+.++++|++|+|+++. ++..-=..+..+    ++|+.|+|++|. ++..--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468888888887664433445677777777777764 443222233333    246666666653 44222223344455


Q ss_pred             CcEEecccC
Q 044236          192 LTDIAMSNN  200 (747)
Q Consensus       192 L~~L~l~~N  200 (747)
                      |+.|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555443

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.93  E-value=0.0014  Score=68.12  Aligned_cols=164  Identities=12%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             cCHHHHHHHhhCCCc-----cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCC--cceee
Q 044236          430 FYLEELKEATNNFDS-----LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH--LVSLL  502 (747)
Q Consensus       430 ~~~~~l~~~~~~f~~-----~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~n--Iv~l~  502 (747)
                      ++.+++......|..     .+.|+.|....+|+....+| .+++|.....  .....+..|..+++.+....  +.+++
T Consensus         7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~   83 (322)
T 2ppq_A            7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPL   83 (322)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred             CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCccc
Confidence            455666666666654     34577788899999987666 4678877642  11234556777777664222  23333


Q ss_pred             eeeeccCCCCCCCCceEEEEEeccCCCCcccc--------------cccC----CCC-----CCCCHHHHHH--------
Q 044236          503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH--------------LSEN----CPE-----NVLKWSDRLA--------  551 (747)
Q Consensus       503 g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~--------------l~~~----~~~-----~~l~~~~~~~--------  551 (747)
                      ... + +..........+++|||++|..+...              +|..    ...     ....|.....        
T Consensus        84 ~~~-~-g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  161 (322)
T 2ppq_A           84 PRK-D-GELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE  161 (322)
T ss_dssp             CBT-T-CCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred             CCC-C-CCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHh
Confidence            211 0 00000001356899999998654321              1110    000     0112433111        


Q ss_pred             ----HHHHHHHHHHHhhcC----CCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          552 ----ILIGVAKAVHFLHSS----VISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       552 ----i~~~ia~gL~yLH~~----~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                          +...+.+.+++++..    ....++|+|+.+.|||++.+..+.|.||+.+.
T Consensus       162 ~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          162 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence                011234455555431    22468999999999999987666899999874

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.85  E-value=0.002  Score=69.75  Aligned_cols=31  Identities=13%  Similarity=0.211  Sum_probs=27.4

Q ss_pred             CCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          569 SGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       569 ~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      +.++|+|+++.|||++.++ ++|.||+.+..-
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            6789999999999998776 999999998653

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.81  E-value=0.0023  Score=65.75  Aligned_cols=71  Identities=10%  Similarity=-0.063  Sum_probs=42.4

Q ss_pred             cccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCc-ceeeeeeeccCCCCCCCCceEEEEE
Q 044236          445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL-VSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nI-v~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      .+.|+.|....+|+.     ..+++|+-...... ..+..+|..+++.+...++ .++++++.+          .-++|+
T Consensus        23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~~~----------~~~~v~   86 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVDPA----------TGVMVT   86 (301)
T ss_dssp             CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEECTT----------TCCEEE
T ss_pred             eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEECC----------CCEEEE
Confidence            677899999999998     34677776532111 1123567777776642223 355554322          237899


Q ss_pred             ecc-CCCCc
Q 044236          524 EYI-PNGSY  531 (747)
Q Consensus       524 Ey~-~~gsL  531 (747)
                      ||+ ++..+
T Consensus        87 e~i~~g~~l   95 (301)
T 3dxq_A           87 RYIAGAQTM   95 (301)
T ss_dssp             ECCTTCEEC
T ss_pred             eecCCCccC
Confidence            999 55444

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.66  E-value=0.005  Score=66.70  Aligned_cols=73  Identities=23%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             cccccCCCCeeEEEEEeCC--------CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCc-ceeeeeeeccCCCCCCC
Q 044236          445 LSFMGEGSRGKLYKGRLEN--------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL-VSLLGHCIESGSQDDSN  515 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nI-v~l~g~~~~~~~~~~~~  515 (747)
                      .+.|+.|....||++...+        +..+++|+....  .....+.+|..+++.+...++ .++++.+..        
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~--------  147 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG--------  147 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT--------
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC--------
Confidence            4568889899999998753        467888887421  111455679888888753333 566665421        


Q ss_pred             CceEEEEEeccCCCCc
Q 044236          516 TNKVFLVYEYIPNGSY  531 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL  531 (747)
                          .+||||+++..+
T Consensus       148 ----g~v~e~l~G~~l  159 (429)
T 1nw1_A          148 ----GRLEEYIPSRPL  159 (429)
T ss_dssp             ----EEEECCCCEEEC
T ss_pred             ----CEEEEEeCCccc
Confidence                389999986444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.63  E-value=0.0019  Score=57.11  Aligned_cols=37  Identities=32%  Similarity=0.515  Sum_probs=25.1

Q ss_pred             ccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          259 QLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       259 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      +|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4666677777777766666666777777777777553

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.61  E-value=0.018  Score=59.73  Aligned_cols=146  Identities=8%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             ccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCC--cceeeeeeeccCCCCCCCCceEEEEE
Q 044236          446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH--LVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~n--Iv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      ..++ |....||+....+|+.+++|...... .....+..|..+++.+....  +.+++..  +.. .........++||
T Consensus        32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~--~g~-~~~~~~g~~~~l~  106 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAF--NGQ-TLLNHQGFYFAVF  106 (328)
T ss_dssp             EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCB--TTB-SCEEETTEEEEEE
T ss_pred             Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeec--CCc-EEEEECCEEEEEE
Confidence            3466 88889999887778778899876321 23456677888887764222  3444433  110 0000023568899


Q ss_pred             eccCCCCccc-----c---------ccc----CC--CCCCCCHHHH----HHH---------------HHHHHHHHHHhh
Q 044236          524 EYIPNGSYRA-----H---------LSE----NC--PENVLKWSDR----LAI---------------LIGVAKAVHFLH  564 (747)
Q Consensus       524 Ey~~~gsL~~-----~---------l~~----~~--~~~~l~~~~~----~~i---------------~~~ia~gL~yLH  564 (747)
                      ||+++..+..     +         +|.    ..  .....++...    ..+               ...+.+.+..+.
T Consensus       107 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (328)
T 1zyl_A          107 PSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVT  186 (328)
T ss_dssp             ECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            9998755431     0         111    00  0112232211    000               001111222222


Q ss_pred             c----CCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          565 S----SVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       565 ~----~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .    .....++|+|+++.|||++ + .+.|.||+.+.
T Consensus       187 ~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          187 AHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             HHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             HHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            1    1224579999999999999 4 89999999874

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.56  E-value=0.0035  Score=55.42  Aligned_cols=55  Identities=22%  Similarity=0.344  Sum_probs=43.9

Q ss_pred             EEEccCCCCC-CCCC-CCCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCc
Q 044236          217 VLDLRENKLD-SGLP-LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLS  271 (747)
Q Consensus       217 ~L~L~~N~l~-~~~~-~~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  271 (747)
                      .++.+++.|+ ..+| ..+.+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777776 2444 45677888888889998877888999999999999999774

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.49  E-value=0.011  Score=64.47  Aligned_cols=74  Identities=12%  Similarity=0.040  Sum_probs=46.9

Q ss_pred             cccccCCCCeeEEEEEeCC-CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCc-ceeeeeeeccCCCCCCCCceEEEE
Q 044236          445 LSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL-VSLLGHCIESGSQDDSNTNKVFLV  522 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nI-v~l~g~~~~~~~~~~~~~~~~~lv  522 (747)
                      ++.|+.|-...+|+....+ +..+++|+...... ..-+..+|..+++.+...++ .++++++..            .+|
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~-~~idR~~E~~vl~~L~~~gl~P~ll~~~~~------------G~v  179 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTD-EIINREREKKISCILYNKNIAKKIYVFFTN------------GRI  179 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEECC-CC-SCSCHHHHHHHHHHHTTSSSBCCEEEEETT------------EEE
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECCCChh-hhcCHHHHHHHHHHHHhcCCCCCEEEEeCC------------eEE
Confidence            4568888899999998765 46788887642211 11122578888888865455 466665521            359


Q ss_pred             EeccCCCCc
Q 044236          523 YEYIPNGSY  531 (747)
Q Consensus       523 ~Ey~~~gsL  531 (747)
                      |||+++..+
T Consensus       180 ~e~I~G~~l  188 (458)
T 2qg7_A          180 EEFMDGYAL  188 (458)
T ss_dssp             EECCCSEEC
T ss_pred             EEeeCCccC
Confidence            999987554

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.40  E-value=0.01  Score=61.84  Aligned_cols=31  Identities=10%  Similarity=0.045  Sum_probs=27.0

Q ss_pred             CCcccCCCCCCceeecCC----CcEEEeccccccc
Q 044236          569 SGSFSNRLTTNNILLDEH----RIAKLSDYGISII  599 (747)
Q Consensus       569 ~~ivHrDlk~~NILld~~----~~~kl~DFGla~~  599 (747)
                      ..++|+|+.+.||+++.+    ..+.|.||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            578999999999999874    6789999998854

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.32  E-value=0.001  Score=63.16  Aligned_cols=87  Identities=10%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             ccCCCCCCEEEeecc-CCCCC----CChhccCCCCCCEEEcccCCCCC----CCCccccCCCCCCEEEcccCCCCCCC--
Q 044236           90 LTRLTTLRVLSLVSL-GIWGP----LPDKIHRLSSLELLDMSSNFLFG----AIPSGISRLVRLQTLTMDTNFFDDNV--  158 (747)
Q Consensus        90 l~~l~~L~~L~L~~n-~i~~~----~p~~~~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~~~~~~--  158 (747)
                      +.+-+.|+.|+|++| .|...    +-+.+..-+.|+.|+|++|.+..    .+-..+..-+.|++|+|+.|.|+..-  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455567778888764 65321    33445556677777777777642    23334444566777777777765321  


Q ss_pred             --cccccCCCCCCEEEccCC
Q 044236          159 --PDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus       159 --p~~~~~l~~L~~L~l~~N  176 (747)
                        -+.+..-+.|+.|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence              122333445666666654

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.29  E-value=0.015  Score=61.67  Aligned_cols=141  Identities=18%  Similarity=0.147  Sum_probs=80.4

Q ss_pred             cccccCCCCeeEEEEEeCC--------CcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCC
Q 044236          445 LSFMGEGSRGKLYKGRLEN--------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .+.+..|-...+|+....+        ++.+.+|+--. .......+.+|..+++.+. +.-..++++++..        
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~--------  125 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-ILQGVDSLVLESVMFAILAERSLGPQLYGVFPE--------  125 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT--------
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC--------
Confidence            3567778888999998642        46788887532 1223556678999888774 2223556655421        


Q ss_pred             CceEEEEEeccCCCCcccc-----------------cccCC-C-CCCCC--HHHHHHHHHHHH-----------------
Q 044236          516 TNKVFLVYEYIPNGSYRAH-----------------LSENC-P-ENVLK--WSDRLAILIGVA-----------------  557 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~-----------------l~~~~-~-~~~l~--~~~~~~i~~~ia-----------------  557 (747)
                          .+||||+++..+..-                 ||.-. + .....  |.+..++..++.                 
T Consensus       126 ----g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~  201 (379)
T 3feg_A          126 ----GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYS  201 (379)
T ss_dssp             ----EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTT
T ss_pred             ----ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHH
Confidence                399999998655321                 11110 0 11122  334444433321                 


Q ss_pred             --HHHHHhh----c-CCCCCcccCCCCCCceeecCC----CcEEEecccccc
Q 044236          558 --KAVHFLH----S-SVISGSFSNRLTTNNILLDEH----RIAKLSDYGISI  598 (747)
Q Consensus       558 --~gL~yLH----~-~~~~~ivHrDlk~~NILld~~----~~~kl~DFGla~  598 (747)
                        ..+.+|.    . .....++|+|+.+.||+++.+    +.+.+.||..+.
T Consensus       202 l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          202 LKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence              1223332    2 122457999999999999876    789999999884

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.12  E-value=0.0073  Score=63.99  Aligned_cols=74  Identities=14%  Similarity=0.132  Sum_probs=43.3

Q ss_pred             cccccCCCCeeEEEEEeCC---------CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCc-ceeeeeeeccCCCCCC
Q 044236          445 LSFMGEGSRGKLYKGRLEN---------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL-VSLLGHCIESGSQDDS  514 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~---------g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nI-v~l~g~~~~~~~~~~~  514 (747)
                      .+.++.|....+|+....+         +..+++|+...... ...+...|.++++.+...++ .++++..  .      
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~------  108 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF--N------  108 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE--T------
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec--C------
Confidence            3567888888999998654         26788887653221 11234578888877753333 3566433  1      


Q ss_pred             CCceEEEEEeccCCCCc
Q 044236          515 NTNKVFLVYEYIPNGSY  531 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL  531 (747)
                          -++||||+++..+
T Consensus       109 ----~~~v~e~i~G~~l  121 (369)
T 3c5i_A          109 ----GGRIEEWLYGDPL  121 (369)
T ss_dssp             ----TEEEEECCCSEEC
T ss_pred             ----CcEEEEEecCCcC
Confidence                1689999987544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.75  E-value=0.0024  Score=60.51  Aligned_cols=88  Identities=11%  Similarity=0.175  Sum_probs=54.9

Q ss_pred             hccCCCCCCEEEcccC-CCCC----CCCccccCCCCCCEEEcccCCCCCC----CcccccCCCCCCEEEccCCcCCCC--
Q 044236          113 KIHRLSSLELLDMSSN-FLFG----AIPSGISRLVRLQTLTMDTNFFDDN----VPDWWDSLSNLTVLSLKSNQLKGQ--  181 (747)
Q Consensus       113 ~~~~L~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~N~~~~~----~p~~~~~l~~L~~L~l~~N~l~~~--  181 (747)
                      .+.+-+.|+.|+|++| .+..    .+-..+..-+.|+.|+|++|.+...    +.+.+..-+.|+.|+|+.|+|...  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455678999999885 6532    2344566667888888888887642    223333456788888888887632  


Q ss_pred             --CchhhcCCccCcEEecccC
Q 044236          182 --FPSSICRIATLTDIAMSNN  200 (747)
Q Consensus       182 --~p~~~~~l~~L~~L~l~~N  200 (747)
                        +-..+..-+.|+.|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence              2223344455666666654

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=95.75  E-value=0.027  Score=58.82  Aligned_cols=31  Identities=10%  Similarity=0.201  Sum_probs=27.5

Q ss_pred             CCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          569 SGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       569 ~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ..++|+|+.+.||+++.++.+.|.||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            4689999999999999888899999988754

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=94.18  E-value=0.065  Score=57.50  Aligned_cols=74  Identities=15%  Similarity=0.116  Sum_probs=46.9

Q ss_pred             cccccCCCCeeEEEEEeCC--------CcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCC-cceeeeeeeccCCCCCCC
Q 044236          445 LSFMGEGSRGKLYKGRLEN--------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH-LVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~n-Iv~l~g~~~~~~~~~~~~  515 (747)
                      ++.+..|-...+|+....+        +..+++|+-.... ...-+..+|..+++.+.-.+ ..++++.+.         
T Consensus        75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~---------  144 (424)
T 3mes_A           75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP---------  144 (424)
T ss_dssp             EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET---------
T ss_pred             EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC---------
Confidence            4567778888999998753        5778888754322 11223457888887774222 345554331         


Q ss_pred             CceEEEEEeccCCCCc
Q 044236          516 TNKVFLVYEYIPNGSY  531 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL  531 (747)
                         -++||||+++..|
T Consensus       145 ---~~~I~efI~G~~l  157 (424)
T 3mes_A          145 ---EGRIEEFIDGEPL  157 (424)
T ss_dssp             ---TEEEEECCCSEEC
T ss_pred             ---CCEEEEEeCCccC
Confidence               2789999998654

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=92.79  E-value=0.13  Score=49.00  Aligned_cols=98  Identities=8%  Similarity=-0.010  Sum_probs=59.8

Q ss_pred             CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccccccchhccc
Q 044236          530 SYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK  609 (747)
Q Consensus       530 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~  609 (747)
                      +|.+.|+..  ..++++.+++.++.|.+++|.-+-... .+ ..+=+-|..|++..+|.+...+ +.+..    .     
T Consensus        34 SL~eIL~~~--~~PlsEEqaWALc~Qc~~~L~~~~~~~-~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~~----~-----   99 (229)
T 2yle_A           34 SLEEILRLY--NQPINEEQAWAVCYQCCGSLRAAARRR-QP-RHRVRSAAQIRVWRDGAVTLAP-AADDA----G-----   99 (229)
T ss_dssp             EHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHTT-CC-CCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred             cHHHHHHHc--CCCcCHHHHHHHHHHHHHHHHhhhhcc-cC-CceecCCcceEEecCCceeccc-ccccc----c-----
Confidence            677888765  568999999999999999987661100 01 1233457889999999887764 22110    0     


Q ss_pred             CCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh
Q 044236          610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV  657 (747)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt  657 (747)
                                     ..+..+||.. ....+.+.=|||+|+++|.-+-
T Consensus       100 ---------------~~~~~~pe~~-~~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A          100 ---------------EPPPVAGKLG-YSQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             ----------------------CCS-SSSSCHHHHHHHHHHHHHHHHT
T ss_pred             ---------------ccCCCChhhc-cccchHHHHHHHHHHHHHHHhh
Confidence                           0011122221 1234567789999999998764

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=87.11  E-value=1.2  Score=47.37  Aligned_cols=29  Identities=31%  Similarity=0.300  Sum_probs=24.5

Q ss_pred             cccCCCCCCceee------cCCCcEEEeccccccc
Q 044236          571 SFSNRLTTNNILL------DEHRIAKLSDYGISII  599 (747)
Q Consensus       571 ivHrDlk~~NILl------d~~~~~kl~DFGla~~  599 (747)
                      ++|+|+.+.|||+      +++..+++.||-.|..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            5799999999999      4567799999999843

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=85.17  E-value=0.12  Score=56.33  Aligned_cols=61  Identities=13%  Similarity=0.026  Sum_probs=18.4

Q ss_pred             ccccccCCCCeeEEEEEeCC-CcEEEE------EEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeec
Q 044236          444 SLSFMGEGSRGKLYKGRLEN-GTYVAI------RSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE  507 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~-g~~vAv------K~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~  507 (747)
                      ..+.+|   ||.||+|.+.. ...|||      |..+...  ......+.+|..+++.++|||+++.+++...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            445676   99999999754 467888      7665322  2334568889999999999999999887653

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=82.87  E-value=0.23  Score=33.82  Aligned_cols=23  Identities=22%  Similarity=0.496  Sum_probs=8.5

Q ss_pred             eeeehhHHHHHHHHHHhhheeeee
Q 044236          355 AAIAFGAVLVLVLSAFGVIIYCKR  378 (747)
Q Consensus       355 ~~iv~~~~~~l~~~~~~v~~~~~r  378 (747)
                      +++++|+++++ +++++++++.||
T Consensus        15 ~gVVgGv~~~~-ii~~~~~~~~RR   37 (44)
T 2ks1_B           15 TGMVGALLLLL-VVALGIGLFMRR   37 (44)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred             eehhHHHHHHH-HHHHHHHHHhhh
Confidence            33333333333 333333334333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=82.72  E-value=0.19  Score=34.12  Aligned_cols=25  Identities=32%  Similarity=0.635  Sum_probs=9.0

Q ss_pred             EeeeehhHHHHHHHHHHhhheeeee
Q 044236          354 IAAIAFGAVLVLVLSAFGVIIYCKR  378 (747)
Q Consensus       354 i~~iv~~~~~~l~~~~~~v~~~~~r  378 (747)
                      +++.+++.++++++++++++++.||
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~~~RR   36 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAVYVRR   36 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhhh
Confidence            3333333333333333333334333

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=80.62  E-value=0.2  Score=33.98  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=11.5

Q ss_pred             ceEeeeehhHHHHHHHHHHhhheeeee
Q 044236          352 GLIAAIAFGAVLVLVLSAFGVIIYCKR  378 (747)
Q Consensus       352 ~~i~~iv~~~~~~l~~~~~~v~~~~~r  378 (747)
                      ..++++++|++ +++++++++.+|.||
T Consensus        12 ~~Ia~~vVGvl-l~vi~~l~~~~~~RR   37 (44)
T 2jwa_A           12 TSIISAVVGIL-LVVVLGVVFGILIKR   37 (44)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHH-HHHHHHHHHHhheeh
Confidence            34555555633 333334444444344

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	747
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-34
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	8e-34
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-32
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-31
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-31
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-30
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-30
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-30
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-30
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-29
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-29
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-28
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-28
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-28
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	4e-28
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-27
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-27
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	5e-27
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-26
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-26
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-26
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	5e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-26
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-25
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-25
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-25
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-25
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-25
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	9e-25
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-24
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-23
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-23
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-22
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-22
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-22
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-22
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-22
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-22
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	5e-22
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-22
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-21
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	8e-21
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	8e-21
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-20
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-20
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-19
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-19
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-19
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-19
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-18
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-17
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	4e-17
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-17
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	7e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-16
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-16
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-16
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 6e-34
 Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 36/289 (12%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
                +  +G G  G+++ G     T VA++SL      S        + + +LQH  LV
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLV 71

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L     +           ++++ EY+ NGS    L        L  +  L +   +A+ 
Sbjct: 72  RLYAVVTQ---------EPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEG 121

Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGF 619
           + F+            L   NIL+ +    K++D+G++ ++E++E    +G     ++  
Sbjct: 122 MAFIEERNY---IHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTA 178

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ 679
                     +           + DV++FG +L E +      G+     +       + 
Sbjct: 179 PEAINYGTFTI-----------KSDVWSFGILLTEIVTH----GRIPYPGMTNPEVIQNL 223

Query: 680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
           +   R+V P     C +E    +  +   C    P  RP+F+ +   L+
Sbjct: 224 ERGYRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFDYLRSVLE 265

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 8e-34
 Identities = 56/294 (19%), Positives = 109/294 (37%), Gaps = 30/294 (10%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
                   +G GS G +YKG+      V + ++T      +Q  K  +  L K +H +++
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
             +G+             ++ +V ++    S   HL     E   +    + I    A+ 
Sbjct: 68  LFMGYSTA---------PQLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQG 116

Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGF 619
           + +LH+  I       L +NNI L E    K+ D+G++        ++++  G       
Sbjct: 117 MDYLHAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLA-------TVKSRWSGSHQFEQL 166

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMASFGS 678
                  A  V+ + D      + DVY FG +L E + G    +       +  M     
Sbjct: 167 SGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV---- 222

Query: 679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ 732
             G        V + C +     +  +  +C+  +   RP F  +L +++  A+
Sbjct: 223 GRGYLSPDLSKVRSNCPKA----MKRLMAECLKKKRDERPLFPQILASIELLAR 272

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 5e-32
 Identities = 55/289 (19%), Positives = 102/289 (35%), Gaps = 36/289 (12%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
            +   L  +G G  G +  G+      VAI+ +      S          +  L H  LV
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLV 62

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L G C +           +F++ EY+ NG    +L      +  +    L +   V +A
Sbjct: 63  QLYGVCTKQR--------PIFIITEYMANGCLLNYL--REMRHRFQTQQLLEMCKDVCEA 112

Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGF 619
           + +L S          L   N L+++  + K+SD+G+S  + + E   + G     R+  
Sbjct: 113 MEYLESKQFLH---RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP 169

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ 679
             +               +   + D++ FG ++ E        GK          +    
Sbjct: 170 PEVLMY-----------SKFSSKSDIWAFGVLMWEIYSL----GKMPYERFTNSETAEHI 214

Query: 680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
               R+  P      S++    V +I   C   +   RP+F+ +L N+ 
Sbjct: 215 AQGLRLYRP---HLASEK----VYTIMYSCWHEKADERPTFKILLSNIL 256

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (303), Expect = 3e-31
 Identities = 61/293 (20%), Positives = 111/293 (37%), Gaps = 36/293 (12%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           +    +  +G G  G ++ G   N   VAI+++      S ++     + + KL HP LV
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLV 63

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L G C+E           + LV+E++ +G    +L              L + + V + 
Sbjct: 64  QLYGVCLEQA--------PICLVFEFMEHGCLSDYLRTQRGLF--AAETLLGMCLDVCEG 113

Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGF 619
           + +L  + +       L   N L+ E+++ K+SD+G++  + + +   + G     ++  
Sbjct: 114 MAYLEEACV---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW-- 168

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ 679
                 S E    V    R   + DV++FG ++ E        GK      +        
Sbjct: 169 -----ASPE----VFSFSRYSSKSDVWSFGVLMWEVFSE----GKIPYENRSNSEVVEDI 215

Query: 680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ 732
               R+  P      S      V  I N C    P  RP+F  +L  L   A+
Sbjct: 216 STGFRLYKP---RLASTH----VYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 261

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 4e-31
 Identities = 59/290 (20%), Positives = 110/290 (37%), Gaps = 40/290 (13%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
                L  +G+G  G +  G    G  VA++ +      + Q        +++L+H +LV
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLV 63

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            LLG  +E           +++V EY+  GS   +L      +VL     L   + V +A
Sbjct: 64  QLLGVIVEEK-------GGLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEA 115

Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGF 619
           + +L     +      L   N+L+ E  +AK+SD+G++      +             G 
Sbjct: 116 MEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD-----------TGK 161

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQ 679
           L +  T+ E     +  ++   + DV++FG +L E      V        L ++     +
Sbjct: 162 LPVKWTAPE----ALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPRVEK 215

Query: 680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQY 729
             +    D      C       V  +   C   + + RPSF  +   L++
Sbjct: 216 GYKMDAPD-----GCPPA----VYEVMKNCWHLDAAMRPSFLQLREQLEH 256

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (301), Expect = 1e-30
 Identities = 53/318 (16%), Positives = 118/318 (37%), Gaps = 45/318 (14%)

Query: 429 TFYLEELKEATNNFDS---------LSFMGEGSRGKLYKGRL----ENGTYVAIRSL-TF 474
            F  E+  EA   F              +G G  G++  G L    +   +VAI++L + 
Sbjct: 6   PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG 65

Query: 475 LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAH 534
             +   ++       + +  HP+++ L G   +S          V ++ E++ NGS  + 
Sbjct: 66  YTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS--------TPVMIITEFMENGSLDSF 117

Query: 535 LSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
           L +N  +        + +L G+A  + +L            L   NIL++ + + K+SD+
Sbjct: 118 LRQNDGQF--TVIQLVGMLRGIAAGMKYLADMNY---VHRDLAARNILVNSNLVCKVSDF 172

Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
           G+S  +E+             +    +    + +        ++     DV+++G ++ E
Sbjct: 173 GLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQY-------RKFTSASDVWSYGIVMWE 225

Query: 655 SLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEP 714
            +      G+   + +       + +   R+  P+    C       +  +   C   + 
Sbjct: 226 VMSY----GERPYWDMTNQDVINAIEQDYRLPPPM---DCPSA----LHQLMLDCWQKDR 274

Query: 715 SSRPSFEDVLWNLQYAAQ 732
           + RP F  ++  L    +
Sbjct: 275 NHRPKFGQIVNTLDKMIR 292

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 3e-30
 Identities = 47/298 (15%), Positives = 109/298 (36%), Gaps = 26/298 (8%)

Query: 449 GEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIES 508
           G+G  G++++G+   G  VA++  +  ++ S    +  +     L+H +++  +    + 
Sbjct: 12  GKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFR-EAEIYQTVMLRHENILGFIAADNK- 68

Query: 509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVI 568
              D+    +++LV +Y  +GS   +L+       +     + + +  A  +  LH  ++
Sbjct: 69  ---DNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIV 121

Query: 569 SGSFSNR-----LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
                       L + NIL+ ++    ++D G+++  +     +     P  R G     
Sbjct: 122 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT--DTIDIAPNHRVGTKRYM 179

Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
                +  I +    +    D+Y  G +  E      + G  E + L       S     
Sbjct: 180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 239

Query: 684 RIVDPVVL---------TTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ 732
            +   V              S E+L ++  I  +C     ++R +   +   L   +Q
Sbjct: 240 EMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (296), Expect = 4e-30
 Identities = 53/304 (17%), Positives = 112/304 (36%), Gaps = 36/304 (11%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
            +      +G G  G++Y+G   +    VA+++L       ++        + +++HP+L
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 75

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V LLG C              +++ E++  G+   +L E C    +     L +   ++ 
Sbjct: 76  VQLLGVCTREP--------PFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 126

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYG 618
           A+ +L            L   N L+ E+ + K++D+G+S +M         G     ++ 
Sbjct: 127 AMEYLEKKNF---IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 183

Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS 678
                              +  ++ DV+ FG +L E     I T     +   +++    
Sbjct: 184 APESLAY-----------NKFSIKSDVWAFGVLLWE-----IATYGMSPYPGIDLSQV-- 225

Query: 679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQATAD 738
                 +++        +     V  +   C    PS RPSF ++    +   Q  + +D
Sbjct: 226 ----YELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISD 281

Query: 739 ADQK 742
             +K
Sbjct: 282 EVEK 285

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 8e-30
 Identities = 56/291 (19%), Positives = 111/291 (38%), Gaps = 38/291 (13%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
           +++ L  +G GS G+  K R   +G  +  + L    + +   Q L   ++ L +L+HP+
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN-VLKWSDRLAILIGV 556
           +V      I      D     +++V EY   G   + +++   E   L     L ++  +
Sbjct: 65  IVRYYDRII------DRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL 118

Query: 557 AKAVHFLHS-SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
             A+   H  S    +  +R L   N+ LD  +  KL D+G++ I+              
Sbjct: 119 TLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKA----- 173

Query: 615 ARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEM 673
                     T        ++      + D+++ G +L E     P  T   +  L  ++
Sbjct: 174 -------FVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKI 226

Query: 674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                ++G+ R +        S E   I+     + +  +   RPS E++L
Sbjct: 227 -----REGKFRRIPY----RYSDELNEII----TRMLNLKDYHRPSVEEIL 264

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 1e-29
 Identities = 52/288 (18%), Positives = 106/288 (36%), Gaps = 33/288 (11%)

Query: 439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH 497
            + ++ +  +G+G+ GK+YK +  E     A + +    +  +++  V +D L+   HP+
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN 70

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V LL              N ++++ E+   G+  A + E   E  L  S    +     
Sbjct: 71  IVKLLDAFYYE--------NNLWILIEFCAGGAVDAVMLEL--ERPLTESQIQVVCKQTL 120

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
            A+++LH + I       L   NIL       KL+D+G+S       +      G     
Sbjct: 121 DALNYLHDNKI---IHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWM 177

Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMASF 676
               +   ++++              DV++ G  L+E     P         +L ++A  
Sbjct: 178 APEVVMCETSKDRPYDYKA-------DVWSLGITLIEMAEIEPPHHELNPMRVLLKIA-- 228

Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             +     +  P   +  S      +     KC+     +R +   +L
Sbjct: 229 --KSEPPTLAQP---SRWSSNFKDFL----KKCLEKNVDARWTTSQLL 267

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 1e-29
 Identities = 52/291 (17%), Positives = 107/291 (36%), Gaps = 40/291 (13%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
            +      +G+G  G+++ G     T VAI++L      S +        + KL+H  LV
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLV 75

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L             +   +++V EY+  GS      +      L+    + +   +A  
Sbjct: 76  QLYAVV---------SEEPIYIVTEYMSKGSLL-DFLKGETGKYLRLPQLVDMAAQIASG 125

Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGF 619
           + ++            L   NIL+ E+ + K++D+G++ ++E++E    +G     ++  
Sbjct: 126 MAYVERMNY---VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTA 182

Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFLLNEMASFG 677
                     +           + DV++FG +L E          G     +L+++    
Sbjct: 183 PEAALYGRFTI-----------KSDVWSFGILLTELTTKGRVPYPGMVNREVLDQV---- 227

Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
                 R         C +     +  +  +C   EP  RP+FE +   L+
Sbjct: 228 -----ERGYRMPCPPECPES----LHDLMCQCWRKEPEERPTFEYLQAFLE 269

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  114 bits (286), Expect = 1e-28
 Identities = 65/289 (22%), Positives = 114/289 (39%), Gaps = 46/289 (15%)

Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPH 497
           F  L  +G GS G +Y  R + N   VAI+ +++  K S    Q++   + FL KL+HP+
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
            +   G  +          +  +LV EY    +         P   L+  +  A+  G  
Sbjct: 77  TIQYRGCYLRE--------HTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAVTHGAL 125

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           + + +LHS  +       +   NILL E  + KL D+G + IM           G     
Sbjct: 126 QGLAYLHSHNM---IHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSF----VGTPYWM 178

Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
                    A  V++ +D  +   + DV++ G   +E     +   K   F +N M++  
Sbjct: 179 ---------APEVILAMDEGQYDGKVDVWSLGITCIE-----LAERKPPLFNMNAMSALY 224

Query: 678 --SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             +Q+    +         S+   + V    + C+   P  RP+ E +L
Sbjct: 225 HIAQNESPALQSG----HWSEYFRNFV----DSCLQKIPQDRPTSEVLL 265

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (284), Expect = 2e-28
 Identities = 64/329 (19%), Positives = 121/329 (36%), Gaps = 66/329 (20%)

Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLK 484
            L  L+   NN + +  +GEG+ G++++ R       E  T VA++    LK+ +  +++
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVK---MLKEEASADMQ 60

Query: 485 VRL----DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
                    +++  +P++V LLG C             + L++EY+  G     L    P
Sbjct: 61  ADFQREAALMAEFDNPNIVKLLGVCAVG--------KPMCLLFEYMAYGDLNEFLRSMSP 112

Query: 541 ENV---------------------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN 579
             V                     L  +++L I   VA  + +L            L T 
Sbjct: 113 HTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKF---VHRDLATR 169

Query: 580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT 639
           N L+ E+ + K++D+G+S  +   +  +A G                       +   R 
Sbjct: 170 NCLVGENMVVKIADFGLSRNIYSADYYKADG----------NDAIPIRWMPPESIFYNRY 219

Query: 640 KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESL 699
             E DV+ +G +L E     I +   + +          ++    + D  +L       L
Sbjct: 220 TTESDVWAYGVVLWE-----IFSYGLQPY-----YGMAHEEVIYYVRDGNILACPENCPL 269

Query: 700 SIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
             + ++   C    P+ RPSF  +   LQ
Sbjct: 270 E-LYNLMRLCWSKLPADRPSFCSIHRILQ 297

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 3e-28
 Identities = 53/301 (17%), Positives = 118/301 (39%), Gaps = 46/301 (15%)

Query: 432 LEELKEA------TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLK 484
           LE+L+           +     +G+G+ G +Y    +  G  VAIR +   ++   + + 
Sbjct: 6   LEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII 65

Query: 485 VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL 544
             +  + + ++P++V+ L   +          +++++V EY+  GS    L++   E  +
Sbjct: 66  NEILVMRENKNPNIVNYLDSYLVG--------DELWVVMEYLAGGS----LTDVVTETCM 113

Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
                 A+     +A+ FLHS+ +       + ++NILL      KL+D+G    +   +
Sbjct: 114 DEGQIAAVCRECLQALEFLHSNQV---IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ 170

Query: 605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTG 663
              +   G    +    +    A              + D+++ G + +E + G P    
Sbjct: 171 SKRSTMVGTP-YWMAPEVVTRKAYGP-----------KVDIWSLGIMAIEMIEGEPPYLN 218

Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
           +     L  +A     +G   + +P      S      +    N+C+  +   R S +++
Sbjct: 219 ENPLRALYLIA----TNGTPELQNP---EKLSAIFRDFL----NRCLDMDVEKRGSAKEL 267

Query: 724 L 724
           L
Sbjct: 268 L 268

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 4e-28
 Identities = 59/294 (20%), Positives = 111/294 (37%), Gaps = 40/294 (13%)

Query: 441 NFDSLSFMGEGSRGKLYKGRLEN----GTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQH 495
           +F+ +  +G G  G +Y G L +      + A++SL  +     +         +    H
Sbjct: 30  HFNEV--IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 87

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           P+++SLLG C+ S            +V  Y+ +G  R         +     D +   + 
Sbjct: 88  PNVLSLLGICLRSE-------GSPLVVLPYMKHGDLRNF--IRNETHNPTVKDLIGFGLQ 138

Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
           VAK + FL S          L   N +LDE    K++D+G++  M + E          +
Sbjct: 139 VAKGMKFLASKKF---VHRDLAARNCMLDEKFTVKVADFGLARDMYDKE--------FDS 187

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA 674
            +             +  +  Q+   + DV++FG +L E     ++T     +  +N   
Sbjct: 188 VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE-----LMTRGAPPYPDVNTFD 242

Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
                   RR++ P     C       +  +  KC  P+   RPSF +++  + 
Sbjct: 243 ITVYLLQGRRLLQP---EYCPDP----LYEVMLKCWHPKAEMRPSFSELVSRIS 289

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-27
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 41/294 (13%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQ 494
              +    +GEG  G +++G           VAI++       S++   ++    + +  
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           HPH+V L+G   E         N V+++ E    G  R+ L        L  +  +    
Sbjct: 67  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFLQVRKYS--LDLASLILYAY 115

Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
            ++ A+ +L S          +   N+L+  +   KL D+G+S  ME+    +A      
Sbjct: 116 QLSTALAYLESKRF---VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLP 172

Query: 615 ARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA 674
            ++                   +R     DV+ FG  + E     ++ G      +    
Sbjct: 173 IKWMAPESINF-----------RRFTSASDVWMFGVCMWE----ILMHGVKPFQGVKNND 217

Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
             G  +   R+  P     C     S++     KC   +PS RP F ++   L 
Sbjct: 218 VIGRIENGERLPMP---PNCPPTLYSLM----TKCWAYDPSRRPRFTELKAQLS 264

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 4e-27
 Identities = 52/303 (17%), Positives = 104/303 (34%), Gaps = 43/303 (14%)

Query: 433 EELKEATNNFDSLSF-MGEGSRGKLYKGRL---ENGTYVAIRSLT-FLKKYSIQNLKVRL 487
           ++L    +N       +G G+ G + +G     +    VAI+ L    +K   + +    
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
             + +L +P++V L+G C             + LV E    G     L     E  +  S
Sbjct: 61  QIMHQLDNPYIVRLIGVC---------QAEALMLVMEMAGGGPLHKFLVGKREE--IPVS 109

Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
           +   +L  V+  + +L            L   N+LL     AK+SD+G+S  +   +   
Sbjct: 110 NVAELLHQVSMGMKYLEEKNF---VHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYY 166

Query: 608 AKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKG 665
                                     ++ ++     DV+++G  + E+L           
Sbjct: 167 TARSA---------GKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK 217

Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW 725
              ++  +     + G+R    P     C  E    + ++ + C   +   RP F  V  
Sbjct: 218 GPEVMAFI-----EQGKRMECPP----ECPPE----LYALMSDCWIYKWEDRPDFLTVEQ 264

Query: 726 NLQ 728
            ++
Sbjct: 265 RMR 267

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  110 bits (277), Expect = 5e-27
 Identities = 42/289 (14%), Positives = 106/289 (36%), Gaps = 40/289 (13%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
           +++D    +G G+ G +++      G   A + +    +   + ++  +  +S L+HP L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           V+L     +         N++ ++YE++  G     +++    N +   + +  +  V K
Sbjct: 86  VNLHDAFEDD--------NEMVMIYEFMSGGELFEKVADE--HNKMSEDEAVEYMRQVCK 135

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHR--IAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
            +  +H +         L   NI+    R    KL D+G++  ++  + ++      +  
Sbjct: 136 GLCHMHENNYV---HLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA 192

Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMAS 675
              +   +                   D+++ G +    L G     G+ +   L  + S
Sbjct: 193 APEVAEGKPVGYYT-------------DMWSVGVLSYILLSGLSPFGGENDDETLRNVKS 239

Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                     +D    +  S++    +     K +  +P++R +    L
Sbjct: 240 ------CDWNMDDSAFSGISEDGKDFI----RKLLLADPNTRMTIHQAL 278

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 3e-26
 Identities = 48/287 (16%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQHPH 497
            ++D +  +GEG+ G++           VA++ +   +     +N+K  +     L H +
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V   GH  E         N  +L  EY   G     +  +     +   D       + 
Sbjct: 65  VVKFYGHRREG--------NIQYLFLEYCSGGELFDRIEPDIG---MPEPDAQRFFHQLM 113

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             V +LH   I       +   N+LLDE    K+SD+G++ +   + + E          
Sbjct: 114 AGVVYLHGIGI---THRDIKPENLLLDERDNLKISDFGLATVFRYNNR-ERLLNKMCGTL 169

Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
            ++     + E   ++   +      DV++ G +L       ++ G+      ++     
Sbjct: 170 PYV-----APE---LLKRREFHAEPVDVWSCGIVLTA-----MLAGELPWDQPSDSCQE- 215

Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             D + +              L+++    +K +   PS+R +  D+ 
Sbjct: 216 YSDWKEKKTYLNPWKKIDSAPLALL----HKILVENPSARITIPDIK 258

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  106 bits (266), Expect = 3e-26
 Identities = 54/296 (18%), Positives = 106/296 (35%), Gaps = 43/296 (14%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR---------LDFL 490
           N++    +G G    + +          A++ +      S    +V+         +D L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 491 SKLQ-HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
            K+  HP+++ L      +           FLV++ +  G    +L+E      L   + 
Sbjct: 64  RKVSGHPNIIQLKDTYETN--------TFFFLVFDLMKKGELFDYLTEKVT---LSEKET 112

Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
             I+  + + +  LH           L   NILLD+    KL+D+G S  ++  EKL   
Sbjct: 113 RKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV 169

Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAF 668
              P      +  C  +  +     ++       D+++ G I+   L G P    + +  
Sbjct: 170 CGTPSYLAPEIIECSMNDNHPGYGKEV-------DMWSTGVIMYTLLAGSPPFWHRKQML 222

Query: 669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
           +L  + S     G  +   P      S     +V    ++ +  +P  R + E+ L
Sbjct: 223 MLRMIMS-----GNYQFGSP-EWDDYSDTVKDLV----SRFLVVQPQKRYTAEEAL 268

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 4e-26
 Identities = 60/290 (20%), Positives = 96/290 (33%), Gaps = 57/290 (19%)

Query: 449 GEGSRGKLYKGRL-ENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
           G GS   +YKG   E    VA   L    L K   Q  K   + L  LQHP++V      
Sbjct: 18  GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 77

Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS 565
             +          + LV E + +G+ + +L        +K     +    + K + FLH+
Sbjct: 78  ESTVKGKKC----IVLVTELMTSGTLKTYLKRFKV---MKIKVLRSWCRQILKGLQFLHT 130

Query: 566 SVISGSFSNR-LTTNNILL-DEHRIAKLSDYGISIIMEEHEKLEAKG-------EGPKAR 616
              +    +R L  +NI +       K+ D G++ +          G       E  + +
Sbjct: 131 R--TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEK 188

Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFLLNEMA 674
           Y                          DVY FG  +LE      P    +  A +     
Sbjct: 189 YDE----------------------SVDVYAFGMCMLEMATSEYPYSECQNAAQIY---- 222

Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                   RR+   V   +  + ++  V  I   CI      R S +D+L
Sbjct: 223 --------RRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 264

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  107 bits (269), Expect = 5e-26
 Identities = 40/289 (13%), Positives = 99/289 (34%), Gaps = 40/289 (13%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
           + +D L  +G G+ G +++      G     + +          +K  +  +++L HP L
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           ++L     +          ++ L+ E++  G     ++    +  +  ++ +  +    +
Sbjct: 89  INLHDAFEDK--------YEMVLILEFLSGGELFDRIAAE--DYKMSEAEVINYMRQACE 138

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHR--IAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
            +  +H   I       +   NI+ +  +    K+ D+G++  +   E ++         
Sbjct: 139 GLKHMHEHSI---VHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK--------- 186

Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMAS 675
                   T+      +VD +      D++  G +    L G     G+ +   L  +  
Sbjct: 187 ----VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKR 242

Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                      D    ++ S E+   +       +  EP  R +  D L
Sbjct: 243 ------CDWEFDEDAFSSVSPEAKDFI----KNLLQKEPRKRLTVHDAL 281

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 8e-26
 Identities = 55/324 (16%), Positives = 110/324 (33%), Gaps = 62/324 (19%)

Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR-LDFLS 491
           ELK+  ++F+ +S +G G+ G ++K     +G  +A + +    K +I+N  +R L  L 
Sbjct: 2   ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
           +   P++V   G     G        ++ +  E++  GS    L +      +       
Sbjct: 60  ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGR---IPEQILGK 108

Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
           + I V K + +L            +  +NIL++     KL D+G+S  + +       G 
Sbjct: 109 VSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG- 165

Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG------------- 658
                         S E     +      ++ D+++ G  L+E  VG             
Sbjct: 166 ---------TRSYMSPE----RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELE 212

Query: 659 --------------PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIV-- 702
                         P         L +             ++D +V     +    +   
Sbjct: 213 LMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSL 272

Query: 703 --VSITNKCICPEPSSRPSFEDVL 724
                 NKC+   P+ R   + ++
Sbjct: 273 EFQDFVNKCLIKNPAERADLKQLM 296

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 2e-25
 Identities = 50/290 (17%), Positives = 108/290 (37%), Gaps = 47/290 (16%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLT---FLKKYSIQNLKVRLDFLSKLQH 495
            +F+    +G+G  G +Y  R  ++   +A++ L      K      L+  ++  S L+H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           P+++ L G+  ++         +V+L+ EY P G+    L +               +  
Sbjct: 66  PNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQKLSK---FDEQRTATYITE 114

Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
           +A A+ + HS          +   N+LL      K++D+G S+      +    G     
Sbjct: 115 LANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCG----- 166

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMA 674
                 +     E    +++ +    + D+++ G +  E LVG P             ++
Sbjct: 167 -----TLDYLPPE----MIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 217

Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
                      V+       ++ +  ++    ++ +   PS RP   +VL
Sbjct: 218 R----------VEFTFPDFVTEGARDLI----SRLLKHNPSQRPMLREVL 253

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-25
 Identities = 67/312 (21%), Positives = 119/312 (38%), Gaps = 55/312 (17%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENG---TYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-Q 494
           N+      +GEG+ G++ K R++        AI+ +  +  K   ++    L+ L KL  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------E 541
           HP++++LLG C   G         ++L  EY P+G+    L ++                
Sbjct: 70  HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 121

Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
           + L     L     VA+ + +L            L   NIL+ E+ +AK++D+G+S   E
Sbjct: 122 STLSSQQLLHFAADVARGMDYLSQKQF---IHRDLAARNILVGENYVAKIADFGLSRGQE 178

Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV 661
            + K    G  P        +                     DV+++G +L E     IV
Sbjct: 179 VYVKKTM-GRLPVRWMAIESLNY------------SVYTTNSDVWSYGVLLWE-----IV 220

Query: 662 TGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
           +  G  +  +     +       R+  P+    C  E    V  +  +C   +P  RPSF
Sbjct: 221 SLGGTPYCGMTCAELYEKLPQGYRLEKPL---NCDDE----VYDLMRQCWREKPYERPSF 273

Query: 721 EDVLWNLQYAAQ 732
             +L +L    +
Sbjct: 274 AQILVSLNRMLE 285

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 3e-25
 Identities = 56/303 (18%), Positives = 117/303 (38%), Gaps = 45/303 (14%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGT-----YVAIRSLTFLKKYSIQNLKVRL----DFL 490
           +       +G G  G++YKG L+  +      VAI++L   K    +  +V        +
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTL---KAGYTEKQRVDFLGEAGIM 63

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
            +  H +++ L G   +           + ++ EY+ NG+    L E   E        +
Sbjct: 64  GQFSHHNIIRLEGVISKY--------KPMMIITEYMENGALDKFLREKDGE--FSVLQLV 113

Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
            +L G+A  + +L +          L   NIL++ + + K+SD+G+S ++E+  +     
Sbjct: 114 GMLRGIAAGMKYLANMNY---VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTT 170

Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
            G K    +              +  ++     DV++FG ++ E +      G+   + L
Sbjct: 171 SGGKIPIRWTAPE---------AISYRKFTSASDVWSFGIVMWEVMTY----GERPYWEL 217

Query: 671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA 730
           +      + +   R+  P+    C       +  +  +C   E + RP F D++  L   
Sbjct: 218 SNHEVMKAINDGFRLPTPM---DCPSA----IYQLMMQCWQQERARRPKFADIVSILDKL 270

Query: 731 AQV 733
            + 
Sbjct: 271 IRA 273

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 6e-25
 Identities = 59/312 (18%), Positives = 101/312 (32%), Gaps = 54/312 (17%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLT-FLKKYSIQNLKVRLDFLSK 492
           N       +G G+ GK+ +         +    VA++ L         + L   L  LS 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 493 L-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-------- 543
           L  H ++V+LLG C   G           ++ EY   G     L       +        
Sbjct: 83  LGNHMNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 134

Query: 544 -------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
                  L   D L+    VAK + FL S          L   NILL   RI K+ D+G+
Sbjct: 135 MEDDELALDLEDLLSFSYQVAKGMAFLASKNC---IHRDLAARNILLTHGRITKICDFGL 191

Query: 597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           +  ++       KG                       +       E DV+++G  L E  
Sbjct: 192 ARDIKNDSNYVVKG----------NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELF 241

Query: 657 VGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
                 G      +   + F       +++         + + + +  I   C   +P  
Sbjct: 242 SL----GSSPYPGMPVDSKF------YKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLK 291

Query: 717 RPSFEDVLWNLQ 728
           RP+F+ ++  ++
Sbjct: 292 RPTFKQIVQLIE 303

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  103 bits (258), Expect = 8e-25
 Identities = 47/298 (15%), Positives = 98/298 (32%), Gaps = 43/298 (14%)

Query: 433 EELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRL---- 487
           ++ ++  + +D    +G G+  ++           VAI+    + K +++  +  +    
Sbjct: 2   KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIK---CIAKKALEGKEGSMENEI 58

Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
             L K++HP++V+L                 ++L+ + +  G     + E          
Sbjct: 59  AVLHKIKHPNIVALDDIYESG--------GHLYLIMQLVSGGELFDRIVEKGF---YTER 107

Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
           D   ++  V  AV +LH   I              LDE     +SD+G+S + +    L 
Sbjct: 108 DASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLS 167

Query: 608 AKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGE 666
                P      +   +  ++ V             D ++ G I    L G P    + +
Sbjct: 168 TACGTPGYVAPEVLAQKPYSKAV-------------DCWSIGVIAYILLCGYPPFYDEND 214

Query: 667 AFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
           A L  ++             D       S  +   +       +  +P  R + E  L
Sbjct: 215 AKLFEQILK------AEYEFDSPYWDDISDSAKDFI----RHLMEKDPEKRFTCEQAL 262

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 9e-25
 Identities = 49/294 (16%), Positives = 105/294 (35%), Gaps = 44/294 (14%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSL---TFLKKYSIQNLKVRLDFLSK 492
            +   L  +G+GS G + +G  +        VA++ L      +  ++ +    ++ +  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
           L H +L+ L G  +            + +V E  P GS    L ++  +           
Sbjct: 68  LDHRNLIRLYGVVLT---------PPMKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRY 116

Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
            + VA+ + +L S          L   N+LL    + K+ D+G+   + +++      E 
Sbjct: 117 AVQVAEGMGYLESKRF---IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEH 173

Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFLL 670
            K  + +              +  +      D + FG  L E          G   + +L
Sbjct: 174 RKVPFAWCAPE---------SLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQIL 224

Query: 671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
           +++     ++G R          C Q+    + ++  +C   +P  RP+F  + 
Sbjct: 225 HKID----KEGER----LPRPEDCPQD----IYNVMVQCWAHKPEDRPTFVALR 266

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-24
 Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 44/287 (15%)

Query: 449 GEGSRGKLYKGRLEN---GTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLG 503
           G G+ G + KG  +       VA++ L            L    + + +L +P++V ++G
Sbjct: 16  GSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIG 75

Query: 504 HCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL 563
            C               LV E    G    +L +N     +K  + + ++  V+  + +L
Sbjct: 76  IC---------EAESWMLVMEMAELGPLNKYLQQNRH---VKDKNIIELVHQVSMGMKYL 123

Query: 564 HSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
                S      L   N+LL     AK+SD+G+S  +   E         K    +    
Sbjct: 124 E---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY--- 177

Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFLLNEMASFGSQDG 681
             + E     ++  +   + DV++FG ++ E+         G   + +   +     + G
Sbjct: 178 --APE----CINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAML-----EKG 226

Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
            R          C +E    +  + N C   +  +RP F  V   L+
Sbjct: 227 ER----MGCPAGCPRE----MYDLMNLCWTYDVENRPGFAAVELRLR 265

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 39/293 (13%), Positives = 99/293 (33%), Gaps = 41/293 (13%)

Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ 494
           KE    +     +G G  G +++     +      + +  +K      +K  +  L+  +
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVK-VKGTDQVLVKKEISILNIAR 59

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           H +++ L                ++ +++E+I        ++ +  E  L   + ++ + 
Sbjct: 60  HRNILHLHESFESM--------EELVMIFEFISGLDIFERINTSAFE--LNEREIVSYVH 109

Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR--IAKLSDYGISIIMEEHEKLEAKGEG 612
            V +A+ FLHS  I       +   NI+    R    K+ ++G +  ++  +        
Sbjct: 110 QVCEALQFLHSHNI---GHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTA 166

Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLN 671
           P+     +      +                D+++ G ++   L G      +    ++ 
Sbjct: 167 PEYYAPEVHQHDVVSTAT-------------DMWSLGTLVYVLLSGINPFLAETNQQIIE 213

Query: 672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
            + +           D       S E++  V    ++ +  E  SR +  + L
Sbjct: 214 NIMN------AEYTFDEEAFKEISIEAMDFV----DRLLVKERKSRMTASEAL 256

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (246), Expect = 2e-23
 Identities = 48/294 (16%), Positives = 97/294 (32%), Gaps = 43/294 (14%)

Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL---TFLKKYSIQNLKVRLDFLS 491
           K+   +F     +GEGS   +   R L      AI+ L     +K+  +  +    D +S
Sbjct: 4   KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 63

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
           +L HP  V L     +          K++    Y  NG    ++           +    
Sbjct: 64  RLDHPFFVKLYFTFQDD--------EKLYFGLSYAKNGELLKYI---RKIGSFDETCTRF 112

Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
               +  A+ +LH   I       L   NILL+E    +++D+G + ++    K      
Sbjct: 113 YTAEIVSALEYLHGKGI---IHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANS 169

Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLL 670
                         S E    ++  +      D++  G I+ + + G P      E  + 
Sbjct: 170 FVGTAQ------YVSPE----LLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIF 219

Query: 671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
            ++            ++         ++  +V     K +  + + R   E++ 
Sbjct: 220 QKIIK----------LEYDFPEKFFPKARDLV----EKLLVLDATKRLGCEEME 259

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 96.7 bits (240), Expect = 1e-22
 Identities = 48/300 (16%), Positives = 107/300 (35%), Gaps = 43/300 (14%)

Query: 439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDF------LS 491
           ++ ++    +G G   +++  R L     VA++    L+    ++    L F       +
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVK---VLRADLARDPSFYLRFRREAQNAA 62

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
            L HP +V++          +       ++V EY+   + R  +    P   +     + 
Sbjct: 63  ALNHPAIVAVYDTGEA----ETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIE 115

Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
           ++    +A++F H + I     +R +   NI++      K+ D+GI+  + +      + 
Sbjct: 116 VIADACQALNFSHQNGI----IHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 171

Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFL 669
                   +L   +   ++V    D+         Y+ G +L E L G P  TG     +
Sbjct: 172 AAVIGTAQYLSPEQARGDSVDARSDV---------YSLGCVLYEVLTGEPPFTGDSPVSV 222

Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-SFEDVLWNLQ 728
             +            I         S +  ++V     K +   P +R  +  ++  +L 
Sbjct: 223 AYQHVR------EDPIPPSARHEGLSADLDAVV----LKALAKNPENRYQTAAEMRADLV 272

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.5 bits (239), Expect = 1e-22
 Identities = 52/305 (17%), Positives = 105/305 (34%), Gaps = 54/305 (17%)

Query: 445 LSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR-----LDFLSKLQHPHL 498
           L F+GEG    +YK R       VAI+ +    +   ++   R     +  L +L HP++
Sbjct: 3   LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI 62

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           + LL              + + LV++++           +     L  S   A ++   +
Sbjct: 63  IGLLDAFGHK--------SNISLVFDFMETDLEVIIKDNSLV---LTPSHIKAYMLMTLQ 111

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYG 618
            + +LH   I       L  NN+LLDE+ + KL+D+G++       +        +    
Sbjct: 112 GLEYLHQHWIL---HRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYR- 167

Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEM---- 673
                  + E   ++   +   +  D++  G IL E L+  P + G  +   L  +    
Sbjct: 168 -------APE---LLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETL 217

Query: 674 --------------ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
                           + +      I    + +    + L ++           P +R +
Sbjct: 218 GTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLI----QGLFLFNPCARIT 273

Query: 720 FEDVL 724
               L
Sbjct: 274 ATQAL 278

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (241), Expect = 1e-22
 Identities = 55/317 (17%), Positives = 102/317 (32%), Gaps = 59/317 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLEN------GTYVAIRSLT-FLKKYSIQNLKVRLDFLSK 492
            N +    +G G+ GK+                VA++ L         + L   L  +++
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 493 L-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL---------------- 535
           L  H ++V+LLG C  SG         ++L++EY   G    +L                
Sbjct: 97  LGSHENIVNLLGACTLSG--------PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYEN 148

Query: 536 ----SENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
                E    NVL + D L     VAK + FL            L   N+L+   ++ K+
Sbjct: 149 QKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSC---VHRDLAARNVLVTHGKVVKI 205

Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
            D+G++  +        +G                       +      ++ DV+++G +
Sbjct: 206 CDFGLARDIMSDSNYVVRGN----------ARLPVKWMAPESLFEGIYTIKSDVWSYGIL 255

Query: 652 LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
           L E     I +     +               +++           +   +  I   C  
Sbjct: 256 LWE-----IFSLGVNPY-----PGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWA 305

Query: 712 PEPSSRPSFEDVLWNLQ 728
            +   RPSF ++   L 
Sbjct: 306 FDSRKRPSFPNLTSFLG 322

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (240), Expect = 2e-22
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 47/312 (15%)

Query: 437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQ 494
           +    + +LS++GEG+ G +       N   VAI+ ++  +  +     +R +  L + +
Sbjct: 5   DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFR 64

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           H +++ +         +   +      +  ++        L        L        L 
Sbjct: 65  HENIIGINDIIRAPTIEQMKD----VYLVTHLMGADLYKLLKTQH----LSNDHICYFLY 116

Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
            + + + ++HS   +      L  +N+LL+     K+ D+G++ + +             
Sbjct: 117 QILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYV 173

Query: 615 ARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEM 673
           A   +      + E   I+++ +      D+++ G IL E L   PI  GK     LN +
Sbjct: 174 ATRWYR-----APE---IMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHI 225

Query: 674 ASFG---------------------SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
                                    S   + ++    +      ++L ++    +K +  
Sbjct: 226 LGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLL----DKMLTF 281

Query: 713 EPSSRPSFEDVL 724
            P  R   E  L
Sbjct: 282 NPHKRIEVEQAL 293

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.5 bits (239), Expect = 2e-22
 Identities = 45/311 (14%), Positives = 117/311 (37%), Gaps = 43/311 (13%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHP 496
           + ++ L+ +G+G+ G+++K R  + G  VA++   +   K+         +  L  L+H 
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
           ++V+L+  C    S  +     ++LV+++  +       +          S+   ++  +
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK---FTLSEIKRVMQML 126

Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
              ++++H + I       +   N+L+    + KL+D+G++      +         +  
Sbjct: 127 LNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLARAFSLAKN-------SQPN 176

Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMAS 675
                +         +++  +      D++  G I+ E     PI+ G  E   L  ++ 
Sbjct: 177 RYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQ 236

Query: 676 F----------------------GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
                                    +  +R++ D +        +L ++    +K +  +
Sbjct: 237 LCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLI----DKLLVLD 292

Query: 714 PSSRPSFEDVL 724
           P+ R   +D L
Sbjct: 293 PAQRIDSDDAL 303

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.1 bits (241), Expect = 2e-22
 Identities = 48/317 (15%), Positives = 99/317 (31%), Gaps = 58/317 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL------TFLKKYSIQNLKVRLDFLSK 492
           N+F     +G G  G++Y  R  + G   A++ L          +    N ++ L  +S 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
              P +V +               +K+  + + +  G    HLS++   +    +D    
Sbjct: 64  GDCPFIVCMSYAFHTP--------DKLSFILDLMNGGDLHYHLSQHGVFS---EADMRFY 112

Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
              +   +  +H+          L   NILLDEH   ++SD G++               
Sbjct: 113 AAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFS----------- 158

Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE 672
            K +              V+   +       D ++ G +L + L G         F  ++
Sbjct: 159 -KKKPHASVGTHGYMAPEVLQKGVAYDS-SADWFSLGCMLFKLLRGHS------PFRQHK 210

Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS------------- 719
                  D     +   +  + S E  S++       +  + + R               
Sbjct: 211 TKDKHEIDRMTLTMAVELPDSFSPELRSLL----EGLLQRDVNRRLGCLGRGAQEVKESP 266

Query: 720 -FEDVLWNLQYAAQVQA 735
            F  + W + +  +   
Sbjct: 267 FFRSLDWQMVFLQKYPP 283

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (238), Expect = 5e-22
 Identities = 57/306 (18%), Positives = 116/306 (37%), Gaps = 47/306 (15%)

Query: 441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
           ++     +G GS G +Y+ +L ++G  VAI+ +   K++  + L++    + KL H ++V
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQI----MRKLDHCNIV 76

Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
            L      SG + D     + LV +Y+P   YR     +  +  L        +  + ++
Sbjct: 77  RLRYFFYSSGEKKDEVY--LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRS 134

Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEH-RIAKLSDYGISIIMEEHEKLEAKGEGPKARYG 618
           + ++HS    G     +   N+LLD    + KL D+G +  +   E   +        Y 
Sbjct: 135 LAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSR--YYR 189

Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEM---- 673
              +   + +    +          DV++ G +L E L+G PI  G      L E+    
Sbjct: 190 APELIFGATDYTSSI----------DVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVL 239

Query: 674 ---------------ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
                            F     +      V       E++++     ++ +   P++R 
Sbjct: 240 GTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALC----SRLLEYTPTARL 295

Query: 719 SFEDVL 724
           +  +  
Sbjct: 296 TPLEAC 301

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.6 bits (234), Expect = 7e-22
 Identities = 57/317 (17%), Positives = 106/317 (33%), Gaps = 51/317 (16%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR------LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLS 491
           +       +G G+ G++ +              VA++ L            +      + 
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-------------SEN 538
              H ++V+LLG C + G         + ++ E+   G+   +L              E+
Sbjct: 73  IGHHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 125

Query: 539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
             ++ L     +     VAK + FL S          L   NILL E  + K+ D+G++ 
Sbjct: 126 LYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLAR 182

Query: 599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG 658
            + +      KG+                      +  +   ++ DV++FG +L E    
Sbjct: 183 DIYKDPDYVRKGD----------ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSL 232

Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
                 G   +  E      +  R R  D       + E    +      C   EPS RP
Sbjct: 233 GASPYPGVK-IDEEFCRRLKEGTRMRAPDY-----TTPEMYQTM----LDCWHGEPSQRP 282

Query: 719 SFEDVLWNLQYAAQVQA 735
           +F +++ +L    Q  A
Sbjct: 283 TFSELVEHLGNLLQANA 299

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.2 bits (233), Expect = 1e-21
 Identities = 50/306 (16%), Positives = 104/306 (33%), Gaps = 52/306 (16%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSIQNLKVRL----DF 489
                   +G+GS G +Y+G        E  T VAI+++    + +    ++        
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTV---NEAASMRERIEFLNEASV 76

Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE-------N 542
           + +    H+V LLG          S      ++ E +  G  +++L    P         
Sbjct: 77  MKEFNCHHVVRLLGVV--------SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLA 128

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
               S  + +   +A  + +L+++         L   N ++ E    K+ D+G++  + E
Sbjct: 129 PPSLSKMIQMAGEIADGMAYLNANKF---VHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 185

Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT 662
            +     G+G                     +         DV++FG +L E        
Sbjct: 186 TDYYRKGGKG----------LLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP 235

Query: 663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED 722
            +G +    ++  F  + G     D      C       +  +   C    P  RPSF +
Sbjct: 236 YQGLSN--EQVLRFVMEGGLLDKPD-----NCPDM----LFELMRMCWQYNPKMRPSFLE 284

Query: 723 VLWNLQ 728
           ++ +++
Sbjct: 285 IISSIK 290

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 8e-21
 Identities = 52/298 (17%), Positives = 112/298 (37%), Gaps = 43/298 (14%)

Query: 442 FDSLSFMGEGSRGKLYKGRL-----ENGTYVAIRSLT-FLKKYSIQNLKVRLDFLSKLQH 495
           F  +  +G G+ G +YKG       +    VAI+ L       + + +      ++ + +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           PH+  LLG C+          + V L+ + +P G    ++ E+           L   + 
Sbjct: 71  PHVCRLLGICLT---------STVQLITQLMPFGCLLDYVREHKDNI--GSQYLLNWCVQ 119

Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
           +AK +++L    +       L   N+L+   +  K++D+G++ ++   EK          
Sbjct: 120 IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK---------- 166

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA 674
            Y             +  +  +    + DV+++G  + E     ++T   + +  +    
Sbjct: 167 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWE-----LMTFGSKPYDGIPASE 221

Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ 732
                +   R+  P     C+ +    V  I  KC   +  SRP F +++      A+
Sbjct: 222 ISSILEKGERLPQP---PICTID----VYMIMVKCWMIDADSRPKFRELIIEFSKMAR 272

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.1 bits (228), Expect = 8e-21
 Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 34/280 (12%)

Query: 449 GEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
           G G  GK+ +          A++    L+       +V L      Q PH+V ++     
Sbjct: 21  GLGINGKVLQIFNKRTQEKFALK---MLQDCPKARREVEL-HWRASQCPHIVRIVDVYEN 76

Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
             +        + +V E +  G   + + +   +      +   I+  + +A+ +LHS  
Sbjct: 77  LYAGR----KCLLIVMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLHSIN 131

Query: 568 ISGSFSNRLTTNNILLDEHR---IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICR 624
           I+      +   N+L    R   I KL+D+G +     H                   C 
Sbjct: 132 IAHR---DVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS-------------LTTPCY 175

Query: 625 TSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRR 684
           T       V+  ++     D+++ G I+   L G           ++       + G+  
Sbjct: 176 TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYE 235

Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             +P   +  S+E   ++       +  EP+ R +  + +
Sbjct: 236 FPNPE-WSEVSEEVKMLI----RNLLKTEPTQRMTITEFM 270

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 1e-20
 Identities = 56/293 (19%), Positives = 97/293 (33%), Gaps = 46/293 (15%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSK-LQ 494
            +F     +G+GS GK++     +   + AI++L     L    ++   V    LS   +
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
           HP L  +                 +F V EY+  G    H+           S       
Sbjct: 62  HPFLTHMFCTFQTKE--------NLFFVMEYLNGGDLMYHIQSCHK---FDLSRATFYAA 110

Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
            +   + FLHS    G     L  +NILLD+    K++D+G+       +       G  
Sbjct: 111 EIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTP 167

Query: 615 ARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEM 673
                  +              Q+     D ++FG +L E L+G     G+ E  L + +
Sbjct: 168 DYIAPEILLG------------QKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSI 215

Query: 674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN 726
                     R+ +P       +E+  ++     K    EP  R      +  
Sbjct: 216 ----------RMDNPFYPRWLEKEAKDLL----VKLFVREPEKRLGVRGDIRQ 254

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 1e-20
 Identities = 49/296 (16%), Positives = 103/296 (34%), Gaps = 47/296 (15%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDF------LSK 492
           + +D+   +G G    + K R    G   A + +   +  S +    R D       L +
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
           +QHP++++L                 V L+ E +  G     L+E      L   +    
Sbjct: 70  IQHPNVITLHEVYENK--------TDVILILELVAGGELFDFLAEKES---LTEEEATEF 118

Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH----RIAKLSDYGISIIMEEHEKLEA 608
           L  +   V++LHS  I+      L   NI+L +        K+ D+G++  ++   + + 
Sbjct: 119 LKQILNGVYYLHSLQIAHFD---LKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFK- 174

Query: 609 KGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF 668
                        I  T       +V+ +   LE D+++ G I        +++G     
Sbjct: 175 ------------NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYI-----LLSGASPFL 217

Query: 669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
              +  +  +        +    +  S  +   +     + +  +P  R + +D L
Sbjct: 218 GDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI----RRLLVKDPKKRMTIQDSL 269

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 1e-19
 Identities = 61/312 (19%), Positives = 114/312 (36%), Gaps = 50/312 (16%)

Query: 438 ATNNFDSLSFMGEGSRGKLYKGR--LENGTYVAIRSLTFLKKYSIQNLKVR-----LDFL 490
           A   ++ ++ +GEG+ GK++K R     G +VA++ +          L        L  L
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
              +HP++V L   C  S +  +    K+ LV+E++          +  PE  +      
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRE---TKLTLVFEHVDQDLT--TYLDKVPEPGVPTETIK 119

Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
            ++  + + + FLHS  +       L   NIL+      KL+D+G++ I      L +  
Sbjct: 120 DMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVV 176

Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFL 669
                R   + +  + A  V             D+++ G I  E     P+  G  +   
Sbjct: 177 VTLWYRAPEVLLQSSYATPV-------------DLWSVGCIFAEMFRRKPLFRGSSDVDQ 223

Query: 670 LNEM----ASFGSQDGRRRIVDPV-------------VLTTCSQESLSIVVSITNKCICP 712
           L ++       G +D  R +  P               +T   +    ++     KC+  
Sbjct: 224 LGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLL----LKCLTF 279

Query: 713 EPSSRPSFEDVL 724
            P+ R S    L
Sbjct: 280 NPAKRISAYSAL 291

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 1e-19
 Identities = 51/324 (15%), Positives = 116/324 (35%), Gaps = 57/324 (17%)

Query: 430 FYLEELKEAT----NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQN 482
           FY +E+ +        +  L  +G G+ G +        G  VAI+ L   F  +   + 
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKR 63

Query: 483 LKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
               L  L  ++H +++ LL       + DD      +LV  ++     +    E     
Sbjct: 64  AYRELRLLKHMRHENVIGLLDVFTPDETLDDF--TDFYLVMPFMGTDLGKLMKHEK---- 117

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
            L       ++  + K + ++H+   +G     L   N+ ++E    K+ D+G++   + 
Sbjct: 118 -LGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQADS 173

Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI-- 660
                            +     + E   ++++  R     D+++ G I+ E + G    
Sbjct: 174 E-----------MTGYVVTRWYRAPE---VILNWMRYTQTVDIWSVGCIMAEMITGKTLF 219

Query: 661 --------------VTGKGEAFLLNEMASFGSQDGRRRIVD------PVVLTTCSQESLS 700
                         VTG   A  +  + S  +++  + + +        +LT  S  +++
Sbjct: 220 KGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVN 279

Query: 701 IVVSITNKCICPEPSSRPSFEDVL 724
           ++     K +  +   R +  + L
Sbjct: 280 LL----EKMLVLDAEQRVTAGEAL 299

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 2e-19
 Identities = 55/313 (17%), Positives = 115/313 (36%), Gaps = 57/313 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL--------ENGTYVAIRSL-TFLKKYSIQNLKVRLDFL 490
           +       +GEG+ G++                T VA++ L +   +  + +L   ++ +
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 491 SKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------- 540
             + +H ++++LLG C +           ++++ EY   G+ R +L    P         
Sbjct: 73  KMIGKHKNIINLLGACTQD--------GPLYVIVEYASKGNLREYLQARRPPGLEYSYNP 124

Query: 541 ----ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
               E  L   D ++    VA+ + +L S          L   N+L+ E  + K++D+G+
Sbjct: 125 SHNPEEQLSSKDLVSCAYQVARGMEYLASKKC---IHRDLAARNVLVTEDNVMKIADFGL 181

Query: 597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
           +  +   +                             +  +    + DV++FG +L E  
Sbjct: 182 ARDIHHID----------YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE-- 229

Query: 657 VGPIVTGKGEAFL-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
              I T  G  +  +     F       R+  P   + C+ E    +  +   C    PS
Sbjct: 230 ---IFTLGGSPYPGVPVEELFKLLKEGHRMDKP---SNCTNE----LYMMMRDCWHAVPS 279

Query: 716 SRPSFEDVLWNLQ 728
            RP+F+ ++ +L 
Sbjct: 280 QRPTFKQLVEDLD 292

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 86.5 bits (213), Expect = 3e-19
 Identities = 45/303 (14%), Positives = 103/303 (33%), Gaps = 43/303 (14%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHPH 497
             +  L  +GEG+ G +YK +   G   A++   L    +         +  L +L+H +
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V L                ++ LV+E++     +           L+     + L+ + 
Sbjct: 62  IVKLYDVIHTK--------KRLVLVFEHLDQDLKKLLDVCEGG---LESVTAKSFLLQLL 110

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
             + + H   +       L   N+L++     K++D+G++                  R 
Sbjct: 111 NGIAYCHDRRV---LHRDLKPQNLLINREGELKIADFGLARAFGIPV-----------RK 156

Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEM--- 673
               I         +++  ++     D+++ G I  E + G P+  G  EA  L  +   
Sbjct: 157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRI 216

Query: 674 ------------ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
                             D    + +P+   +  +      + + +K +  +P+ R + +
Sbjct: 217 LGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAK 276

Query: 722 DVL 724
             L
Sbjct: 277 QAL 279

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.9 bits (209), Expect = 1e-18
 Identities = 38/293 (12%), Positives = 87/293 (29%), Gaps = 29/293 (9%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
           N +     +G GS G +Y G  +  G  VAI+      K     L +       +Q    
Sbjct: 7   NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLE--CVKTKHPQLHIESKIYKMMQGGVG 64

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           +  +  C   G       +   +V E +           +           L +   +  
Sbjct: 65  IPTIRWCGAEG-------DYNVMVMELLGPSLEDLFNFCSRK---FSLKTVLLLADQMIS 114

Query: 559 AVHFLHSSVISGSFSNRLTTNNIL---LDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
            + ++HS          +  +N L     +  +  + D+G++    +     A+      
Sbjct: 115 RIEYIHSKNF---IHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD-----ARTHQHIP 166

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS 675
                 +  T+    +           DD+ + G++L+   +G +     +A    +   
Sbjct: 167 YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKY- 225

Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ 728
               + +      V+      E  + +    N C       +P +  +    +
Sbjct: 226 ERISEKKMSTPIEVLCKGYPSEFATYL----NFCRSLRFDDKPDYSYLRQLFR 274

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.8 bits (208), Expect = 2e-18
 Identities = 80/336 (23%), Positives = 123/336 (36%), Gaps = 55/336 (16%)

Query: 4   SQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQDNSVTGLKIMGDKPVKE 63
              Q LLQ++K L  P+ L  W     D CN T      + C  ++ T      D     
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSW-LPTTDCCNRTWL---GVLCDTDTQTYRVNNLD----- 56

Query: 64  NTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELL 123
                   +    L + + I S +  L  L  L +  + +L     +P  I +L+ L  L
Sbjct: 57  --------LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP--IPPAIAKLTQLHYL 106

Query: 124 DMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFP 183
            ++   + GAIP  +S++  L TL    N     +P    SL NL  ++   N++ G  P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 184 SSICRIATLT-DIAMSNNELSGKLPD--------------------------MSALTSLH 216
            S    + L   + +S N L+GK+P                               T   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 217 VLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS 276
            L       D G   + K L  + L  N   G +PQ   +L  L  L++SFN+L G  P 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 277 VLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
              +L        A+N           CGS L + +
Sbjct: 287 -GGNLQRFDVSAYANN--------KCLCGSPLPACT 313

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 3e-18
 Identities = 52/307 (16%), Positives = 106/307 (34%), Gaps = 51/307 (16%)

Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
           NF  +  +GEG+ G +YK R    G  VA++ +      +         +  L +L HP+
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +V LL              NK++LV+E++     +   +       +      + L  + 
Sbjct: 63  IVKLLDVIHTE--------NKLYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLL 112

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
           + + F HS  +       L   N+L++     KL+D+G++       +            
Sbjct: 113 QGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169

Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMAS- 675
                   + E   I++  +      D+++ G I  E +    +  G  E   L  +   
Sbjct: 170 --------APE---ILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218

Query: 676 ------------------FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR 717
                               S     R     V+    ++  S++    ++ +  +P+ R
Sbjct: 219 LGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLL----SQMLHYDPNKR 274

Query: 718 PSFEDVL 724
            S +  L
Sbjct: 275 ISAKAAL 281

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 82.2 bits (202), Expect = 2e-17
 Identities = 50/317 (15%), Positives = 111/317 (35%), Gaps = 66/317 (20%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPH 497
           +++  +  +G G   ++++   + N   V ++    LK    + +K  +  L  L+  P+
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVK---ILKPVKKKKIKREIKILENLRGGPN 91

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           +++L           D  +    LV+E++ N  ++           L   D    +  + 
Sbjct: 92  IITLADIV------KDPVSRTPALVFEHVNNTDFKQLYQT------LTDYDIRFYMYEIL 139

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLD-EHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
           KA+ + HS    G     +  +N+++D EHR  +L D+G++      ++   +      +
Sbjct: 140 KALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFK 196

Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFLL---- 670
                          ++VD Q      D+++ G +L   +    P   G      L    
Sbjct: 197 ------------GPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIA 244

Query: 671 -----------------------NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITN 707
                                  N++    S+    R V        S E+L  +    +
Sbjct: 245 KVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFL----D 300

Query: 708 KCICPEPSSRPSFEDVL 724
           K +  +  SR +  + +
Sbjct: 301 KLLRYDHQSRLTAREAM 317

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 4e-17
 Identities = 46/305 (15%), Positives = 93/305 (30%), Gaps = 45/305 (14%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIR--SLTFLKKYSIQNLKVRLDFLSKLQHP 496
             ++ L  +GEG+ G ++K +  E    VA++   L    +    +    +  L +L+H 
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
           ++V L                K+ LV+E+      +     +     L      + L  +
Sbjct: 62  NIVRLHDVLHSD--------KKLTLVFEFCDQDLKKYF---DSCNGDLDPEIVKSFLFQL 110

Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
            K + F HS  +       L   N+L++ +   KL+++G++       +  +        
Sbjct: 111 LKGLGFCHSRNV---LHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWY 167

Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFLLN--- 671
                +      +  I           D+++ G I  E      P+  G      L    
Sbjct: 168 RPPDVLFGAKLYSTSI-----------DMWSAGCIFAELANAGRPLFPGNDVDDQLKRIF 216

Query: 672 ------------EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
                        M                 L     +  +    +    +   P  R S
Sbjct: 217 RLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRIS 276

Query: 720 FEDVL 724
            E+ L
Sbjct: 277 AEEAL 281

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 80.2 bits (197), Expect = 5e-17
 Identities = 32/299 (10%), Positives = 80/299 (26%), Gaps = 31/299 (10%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
            ++     +GEGS G +++G  L N   VAI+     ++     L+        L     
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEP--RRSDAPQLRDEYRTYKLLAGCTG 62

Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
           +  + +  + G           LV + +                             +  
Sbjct: 63  IPNVYYFGQEG-------LHNVLVIDLLGPSLEDLLDLCGRK---FSVKTVAMAAKQMLA 112

Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDE-----HRIAKLSDYGISIIMEEHEKLEAKGEGP 613
            V  +H           +  +N L+         +  + D+G+     +        +  
Sbjct: 113 RVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPV-----TKQH 164

Query: 614 KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM 673
                   +  T+    +     +     DD+   G + +  L G +   +G     N+ 
Sbjct: 165 IPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPW-QGLKAATNKQ 223

Query: 674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ 732
                 + ++      +     +E         +        + P ++ +        +
Sbjct: 224 KYERIGEKKQSTPLRELCAGFPEE----FYKYMHYARNLAFDATPDYDYLQGLFSKVLE 278

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 5e-17
 Identities = 39/256 (15%), Positives = 78/256 (30%), Gaps = 23/256 (8%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNF 153
               +L L +  I          L +L  L + +N +    P   + LV+L+ L +  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 154 FDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALT 213
             +       +L  L V   +  +++    + + ++  +            +      + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 214 SLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGI 273
            L  + + +  + +    +P  L  + L  N  +         L  L  L LSFN +S +
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 274 P-----------------------PSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDS 310
                                   P  L     I  ++L +N +S     D         
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

Query: 311 ISDKRVVKFGGNCLSY 326
            +    V    N + Y
Sbjct: 271 KASYSGVSLFSNPVQY 286

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 20/210 (9%)

Query: 82  SIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRL 141
            +   V        +  L    L   G        +  L  + ++   +   IP G+   
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL--P 170

Query: 142 VRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNE 201
             L  L +D N            L+NL  L L  N +      S+     L ++ ++NN+
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 202 LSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQ 261
           L      ++    + V+ L  N + +             +  N F    P    + A   
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNISA-------------IGSNDFCP--PGYNTKKASYS 275

Query: 262 HLDLSFNDLS--GIPPSVLFSLPNISYLHL 289
            + L  N +    I PS    +   + + L
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 1/140 (0%)

Query: 214 SLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGI 273
            L V+   +  L+     +P     + L  N  +      F  L  L  L L  N +S I
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 274 PPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSYDTPSQHK 333
            P     L  +  L+L+ N L   LP+ +    +   + +  + K   +  +        
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 334 EAFCKETNGSKSSRGREIGL 353
           E        S    G   G+
Sbjct: 130 ELGTNPLKSSGIENGAFQGM 149

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 6e-17
 Identities = 59/319 (18%), Positives = 108/319 (33%), Gaps = 55/319 (17%)

Query: 440 NNFDSLSFMGEGSRGKLYKGRL----ENGTYVAI----RSLTFLKKYSIQNLKVRLDFLS 491
            NF+ L  +G G+ GK++  R     + G   A+    ++    K  + ++ +     L 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
            ++    +  L +  ++         K+ L+ +YI  G    HLS+          +   
Sbjct: 84  HIRQSPFLVTLHYAFQTE-------TKLHLILDYINGGELFTHLSQRER---FTEHEVQI 133

Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
            +  +  A+  LH   I       +   NILLD +    L+D+G+S      E   A   
Sbjct: 134 YVGEIVLALEHLHKLGI---IYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF 190

Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLL 670
                Y    I R         VD          ++ G ++ E L G    T  GE    
Sbjct: 191 CGTIEYMAPDIVRGGDSGHDKAVDW---------WSLGVLMYELLTGASPFTVDGEKNSQ 241

Query: 671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS----------- 719
            E++       R    +P      S  +  ++     + +  +P  R             
Sbjct: 242 AEISR------RILKSEPPYPQEMSALAKDLI----QRLLMKDPKKRLGCGPRDADEIKE 291

Query: 720 ---FEDVLWNLQYAAQVQA 735
              F+ + W+   A +V A
Sbjct: 292 HLFFQKINWDDLAAKKVPA 310

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 7e-17
 Identities = 49/325 (15%), Positives = 107/325 (32%), Gaps = 57/325 (17%)

Query: 429 TFYLEELK----EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQ 481
           TFY +EL     E    + +LS +G G+ G +      + G  VA++ L   F      +
Sbjct: 3   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAK 62

Query: 482 NLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE 541
                L  L  ++H +++ LL     + S ++ N      +  ++               
Sbjct: 63  RTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN---DVYLVTHLMGADLN----NIVKC 115

Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
             L       ++  + + + ++HS   +      L  +N+ ++E    K+ D+G++   +
Sbjct: 116 QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTD 172

Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PI 660
           +           +A    L     +                 D+++ G I+ E L G  +
Sbjct: 173 DEMTGYVATRWYRAPEIMLNWMHYNQTV--------------DIWSVGCIMAELLTGRTL 218

Query: 661 VTGKGEAFLLN-----------EMASFGSQDGRRRIVDPV----------VLTTCSQESL 699
             G      L            E+    S +  R  +  +          V    +  ++
Sbjct: 219 FPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAV 278

Query: 700 SIVVSITNKCICPEPSSRPSFEDVL 724
            ++     K +  +   R +    L
Sbjct: 279 DLL----EKMLVLDSDKRITAAQAL 299

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 7e-17
 Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 14/202 (6%)

Query: 92  RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT 151
           +LT L  L   +  I    P  I   ++L+ L ++ N L       ++ L  L  L +  
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA 211
           N   +  P     L+ LT L L +NQ+    P +     T  ++  +  E    +  +S 
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE---DISPISN 305

Query: 212 LTSLHVLDLRENKLDSGLPLMP-KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDL 270
           L +L  L L  N +    P+     L  +  + N  S         L  +  L    N +
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 271 SGIPPSVLFSLPNISYLHLASN 292
           S + P  L +L  I+ L L   
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.7 bits (195), Expect = 2e-16
 Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 32/184 (17%)

Query: 139 SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMS 198
           ++L  L++L    N   D  P    +  NL  LSL  NQLK     ++  +  LTD+ ++
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 199 NNELSGKLPDMSALTSLHVLDLRENKLDSGLPLM-----------------------PKG 235
           NN++S  L  +S LT L  L L  N++ +  PL                         K 
Sbjct: 250 NNQISN-LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
           L  + L  N  S   P     L +LQ L  + N +S +    L +L NI++L    N +S
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQIS 364

Query: 296 GTLP 299
              P
Sbjct: 365 DLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 5e-06
 Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 33/234 (14%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
             + T L  +  L    LGI     D +  L++L  ++ S+N L    P  +  L +L  
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
           + M+ N   D  P    +              +      +  +  L  + +S+N +S   
Sbjct: 93  ILMNNNQIADITPLANLTNLTGL----TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 148

Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLV---------------------TVLLSRNL 245
                 +   +    +      L  +                          +++ + N 
Sbjct: 149 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 208

Query: 246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
            S   P        L  L L+ N L  I    L SL N++ L LA+N +S   P
Sbjct: 209 ISDITPLGILT--NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 258

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            +  +L +   +  + Q   +L Q+  L      +  I    +  L N++ ++ ++N L+
Sbjct: 24  KMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLT 79

Query: 296 GTLP 299
              P
Sbjct: 80  DITP 83

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.4 bits (195), Expect = 1e-16
 Identities = 51/315 (16%), Positives = 112/315 (35%), Gaps = 62/315 (19%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
            +F  L  +G GS G+++  R   NG Y A++ L     ++   +++       LS + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           P ++ + G   ++         ++F++ +YI  G   + L ++                 
Sbjct: 64  PFIIRMWGTFQDA--------QQIFMIMDYIEGGELFSLLRKSQRFP---NPVAKFYAAE 112

Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
           V  A+ +LHS  I       L   NILLD++   K++D+G +  + +             
Sbjct: 113 VCLALEYLHSKDI---IYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY------TLCG 163

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMA 674
              ++            VV  +      D ++FG ++ E L G              ++ 
Sbjct: 164 TPDYIAPE---------VVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKIL 214

Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS--------------F 720
           +           +       +++   ++    ++ I  + S R                F
Sbjct: 215 N----------AELRFPPFFNEDVKDLL----SRLITRDLSQRLGNLQNGTEDVKNHPWF 260

Query: 721 EDVLWNLQYAAQVQA 735
           ++V+W    +  ++ 
Sbjct: 261 KEVVWEKLLSRNIET 275

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 2e-16
 Identities = 50/285 (17%), Positives = 90/285 (31%), Gaps = 45/285 (15%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
           N+FD L  +G+G+ GK+   R    G Y A++ L     + K  + +       L   +H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           P L +L               +++  V EY   G    HLS                   
Sbjct: 65  PFLTALKYAFQTH--------DRLCFVMEYANGGELFFHLSRERV---FTEERARFYGAE 113

Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
           +  A+ +LHS          +   N++LD+    K++D+G+                   
Sbjct: 114 IVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT--------- 161

Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMA 674
                  C T       V++        D +  G ++ E + G      +    L   + 
Sbjct: 162 ---MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218

Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
                       +     T S E+ S++       +  +P  R  
Sbjct: 219 M----------EEIRFPRTLSPEAKSLL----AGLLKKDPKQRLG 249

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 5e-16
 Identities = 49/295 (16%), Positives = 91/295 (30%), Gaps = 55/295 (18%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDF------LSK 492
           + +     +G G  G +Y G  + +   VAI+ +   +      L            L K
Sbjct: 4   SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 63

Query: 493 LQHPH--LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
           +      ++ LL              +   L+ E                   L+     
Sbjct: 64  VSSGFSGVIRLLDWFERP--------DSFVLILERPEPVQDLFDFITE--RGALQEELAR 113

Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGISIIMEEHEKLEAK 609
           +    V +AV   H+    G     +   NIL+D +R   KL D+G   ++++    +  
Sbjct: 114 SFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFD 170

Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL 669
           G      Y      R            +       V++ G +L +     +V G      
Sbjct: 171 G---TRVYSPPEWIRYH----------RYHGRSAAVWSLGILLYD-----MVCGDIPFEH 212

Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
             E+        R ++         S E   ++      C+   PS RP+FE++ 
Sbjct: 213 DEEII-------RGQVFFR---QRVSSECQHLI----RWCLALRPSDRPTFEEIQ 253

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 1e-12
 Identities = 52/331 (15%), Positives = 109/331 (32%), Gaps = 60/331 (18%)

Query: 430 FYLEELKEAT----NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQN 482
           FY  E+ ++T      + +L  +G G++G +           VAI+ L   F  +   + 
Sbjct: 3   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKR 62

Query: 483 LKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
               L  +  + H +++SLL       + ++     V+LV E +     +    E     
Sbjct: 63  AYRELVLMKCVNHKNIISLLNVFTPQKTLEEF--QDVYLVMELMDANLCQVIQMEL---- 116

Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
                    +L  +   +  LHS+ I       L  +NI++      K+ D+G++     
Sbjct: 117 --DHERMSYLLYQMLCGIKHLHSAGI---IHRDLKPSNIVVKSDCTLKILDFGLARTAGT 171

Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIV 661
              +         R   + +     ENV             D+++ G I+ E +    + 
Sbjct: 172 SFMMTPYVVTRYYRAPEVILGMGYKENV-------------DIWSVGCIMGEMVRHKILF 218

Query: 662 TGKGEAFLLNEMAS--------------------FGSQDGRRRIVDPVVLTTCSQESLSI 701
            G+      N++                        ++     +  P +       + S 
Sbjct: 219 PGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSE 278

Query: 702 VVSIT--------NKCICPEPSSRPSFEDVL 724
              +         +K +  +P+ R S +D L
Sbjct: 279 HNKLKASQARDLLSKMLVIDPAKRISVDDAL 309

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 48/248 (19%), Positives = 83/248 (33%), Gaps = 31/248 (12%)

Query: 94  TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAI------------------- 134
              + + L    I            +L +L + SN L                       
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 135 ------PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICR 188
                 P+    L RL TL +D     +  P  +  L+ L  L L+ N L+     +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 189 IATLTDIAMSNNELSGKLPDM-SALTSLHVLDLRENKLDSGLPLMPKGLVTV---LLSRN 244
           +  LT + +  N +S         L SL  L L +N++    P   + L  +    L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 245 LFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC 304
             S    +    L  LQ+L L+ N       +       +     +S+ +  +LP+ L+ 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQRLA- 269

Query: 305 GSKLDSIS 312
           G  L  ++
Sbjct: 270 GRDLKRLA 277

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 33/207 (15%), Positives = 55/207 (26%), Gaps = 48/207 (23%)

Query: 90  LTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTM 149
              L  L  L L   G+    P     L++L+ L +  N L          L  L  L +
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIAT------------------ 191
             N         +  L +L  L L  N++    P +   +                    
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 192 ------LTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNL 245
                 L  + +++N              L       +++                    
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV-------------------- 260

Query: 246 FSGAIPQQFGELAQLQHLDLSFNDLSG 272
              ++PQ    LA      L+ NDL G
Sbjct: 261 -PCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 43/179 (24%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
           A+P GI      Q + +  N         + +  NLT+L L SN L     ++   +A L
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 193 TDIAMSNNELSGKLPDM--SALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI 250
             + +S+N     +       L  LH L L                      R       
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHL---------------------DRCGLQELG 121

Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD 309
           P  F  LA LQ+L L  N L  +P      L N+++L L  N +S    +       LD
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (149), Expect = 1e-10
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQH 495
           + FD +  +G GS G++   +  E+G + A++ L     +K   I++       L  +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
           P LV L     +         + +++V EY+  G   +HL                    
Sbjct: 101 PFLVKLEFSFKD--------NSNLYMVMEYVAGGEMFSHLRRIGR---FSEPHARFYAAQ 149

Query: 556 VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
           +     +LHS  +      R L   N+L+D+    +++D+G +  ++  
Sbjct: 150 IVLTFEYLHSLDL----IYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 42/178 (23%), Positives = 57/178 (32%), Gaps = 6/178 (3%)

Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ 177
               +L +S N L+    + +    RL  L +D         D    L  L  L L  NQ
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT--LPVLGTLDLSHNQ 88

Query: 178 LKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENK---LDSGLPLMPK 234
           L+          A        N   S  L  +  L  L  L L+ N+   L  GL     
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 235 GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
            L  + L+ N  +         L  L  L L  N L  IP    F    + +  L  N
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 235 GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM 293
             + V   +   + A+P           L LS N L     + L     ++ L+L    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 208 DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLS 266
           ++S + S   ++  +  L +  P +PK    + LS NL             +L  L+L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGL 229
           VL L    L       + ++  +T + +S+N L    P ++AL  L VL   +N L++  
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 230 PLMPKGLVTVL-LSRN-LFSGAIPQQFGELAQLQHLDLSFNDLSGIP---PSVLFSLPNI 284
            +     +  L L  N L   A  Q      +L  L+L  N L         +   LP++
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 285 SYL 287
           S +
Sbjct: 120 SSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 8e-08
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 197 MSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGE 256
           +++ +L+  L  +  L  +  LDL  N+L +  P +       +L  +  +         
Sbjct: 5   LAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63

Query: 257 LAQLQHLDLSFNDLSGIP-PSVLFSLPNISYLHLASNMLSG 296
           L +LQ L L  N L        L S P +  L+L  N L  
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 123 LDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL-SLKSNQLKGQ 181
           L ++   L   +   + +L+ +  L +  N           +L+ L  L  L+++    +
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNALE 56

Query: 182 FPSSICRIATLTDIAMSNNELSG--KLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTV 239
               +  +  L ++ + NN L     +  + +   L +L+L+ N L      + + L  +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEM 115

Query: 240 L 240
           L
Sbjct: 116 L 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 97  RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDD 156
           RVL L    +   +   + +L  +  LD+S N L    P+ ++ L  L+   +  +    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLE--VLQASDNAL 55

Query: 157 NVPDWWDSLSNLTVLSLKSNQLKG-QFPSSICRIATLTDIAMSNNELSGKLPDMSALTSL 215
              D   +L  L  L L +N+L+       +     L  + +  N L  +      L  +
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 28/170 (16%)

Query: 448 MGEGSRGKLYKGRLENGTYVAI----------RSLTFLKKYSIQNLKVRLDFLSKLQHPH 497
           MGEG    ++    E      +          + +   + Y   +  V     ++ +   
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
           L  L G  +          N   ++ E I                  +  +   +L  + 
Sbjct: 68  LQKLQGLAVP--KVYAWEGN--AVLMELIDAKELYRV----------RVENPDEVLDMIL 113

Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
           + V   +   I       L+  N+L+ E  I  + D+  S+ + E    E
Sbjct: 114 EEVAKFYHRGI---VHGDLSQYNVLVSEEGI-WIIDFPQSVEVGEEGWRE 159

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 13/221 (5%)

Query: 71  PIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL 130
           P+ ++T++    I   + +          +L    +   +      L+S++ +  +++ +
Sbjct: 2   PLGSETITVPTPIKQ-IFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI 58

Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA 190
                 GI  L  +  L ++ N            L+NL  L             S  +  
Sbjct: 59  KS--VQGIQYLPNVTKLFLNGNKLT-----DIKPLANLKNLGWLFLDENKVKDLSSLKDL 111

Query: 191 TLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI 250
                    +     +  +  L  L  L L  NK+     L     +  L   +     I
Sbjct: 112 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 171

Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLAS 291
                 L +LQ+L LS N +S +    L  L N+  L L S
Sbjct: 172 VP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS 295
            +   L +   + A+ Q   EL  +  +  + +D+  +    +  LPN++ L L  N L+
Sbjct: 26  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 296 G 296
            
Sbjct: 82  D 82

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 218 LDLRENKLDSGLP--LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGI-P 274
           LDL    L   +   L+ +G++     R+     + + F    ++QH+DLS + +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTL 63

Query: 275 PSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSIS 312
             +L     +  L L    LS  +   L+  S L  ++
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 16/229 (6%)

Query: 96  LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFL-FGAIPSGISRLVRLQTLTMDTNFF 154
           +         +  PL +       ++ +D+S++ +    +   +S+  +LQ L+++    
Sbjct: 25  VIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 155 DDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTS 214
            D + +     SNL  L+L       +F       +      ++ +           +  
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 215 LHVLDLRENKLDSGLPLMPKGLVTVLLSRN-------------LFSGAIPQQFGELAQLQ 261
            HV +       SG     +      L R              +      Q+F +L  LQ
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 262 HLDLSF-NDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLD 309
           HL LS   D+       L  +P +  L +   +  GTL         L 
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 19/225 (8%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
           +  R+  +  LS   + +   L   + + S L+ L +    L   I + +++   L  L 
Sbjct: 44  SPFRVQHMD-LSNSVIEVST-LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

Query: 149 MDT--NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSIC-------RIATLTDIAMSN 199
           +     F +  +     S S L  L+L       +    +                   N
Sbjct: 102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 161

Query: 200 NELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNL-----FSGAIPQQF 254
            + S     +    +L  LDL ++ +           +  L   +L            + 
Sbjct: 162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221

Query: 255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
           GE+  L+ L +      G    +  +LP+   L +  +  +    
Sbjct: 222 GEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIAR 263

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 13/206 (6%)

Query: 87  VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQT 146
             T   L  +  LS    G+     + +  L++L  L++  N +    P      +    
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELE 91

Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKL 206
           L+ +       +       +     +  ++       S++  +    +   + + L+G  
Sbjct: 92  LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT 151

Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLS 266
                    ++        D         L T+    N  S   P     L  L  + L 
Sbjct: 152 NLQ------YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK 203

Query: 267 FNDLSGIPPSVLFSLPNISYLHLASN 292
            N +S + P  L +  N+  + L +N
Sbjct: 204 NNQISDVSP--LANTSNLFIVTL-TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 41/224 (18%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 76  TLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIP 135
           ++++  +I+  +     L     ++     +   +      L  +  L      +     
Sbjct: 2   SITQPTAINV-IFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI-- 56

Query: 136 SGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDI 195
            G+  L  L  L +  N            L NLT ++            S          
Sbjct: 57  EGVQYLNNLIGLELKDNQIT-----DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKT 111

Query: 196 AMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFG 255
               +     +  ++ L++L VL L  N++ +  PL         LS      +      
Sbjct: 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVSDLTPLA 170

Query: 256 ELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
            L++L  L    N +S I P  L SLPN+  +HL +N +S   P
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
              N   + +    D   +L  L++ +N+L  + P+   R   L  +  S N L+ ++P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 321

Query: 209 MSALTSLHVLDLRENKLDSGLPLMPKGL 236
           +    +L  L +  N L    P +P+ +
Sbjct: 322 L--PQNLKQLHVEYNPL-REFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 230 PLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHL 289
             +P  L  + +S N     +P       +L+ L  SFN L+ +P        N+  LH+
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAEVPE----LPQNLKQLHV 331

Query: 290 ASNMLSGTLPKDLSCGSKL 308
             N L    P        L
Sbjct: 332 EYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
                SLE L++S+N L   +P+   RL   + L    N   + VP+      NL  L +
Sbjct: 280 CDLPPSLEELNVSNNKL-IELPALPPRL---ERLIASFNHLAE-VPE---LPQNLKQLHV 331

Query: 174 KSNQLKGQFPSSICRIATL 192
           + N L+ +FP     +  L
Sbjct: 332 EYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
              N  S  I         L+ L++S N L  +P       P +  L  + N L+  +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLA-EVPE 321

Query: 301 DLSCGSKLD 309
                 +L 
Sbjct: 322 LPQNLKQLH 330

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 40/213 (18%), Positives = 65/213 (30%), Gaps = 15/213 (7%)

Query: 76  TLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIP 135
           T+++   I+  + T T L       L    +   +      L  +  L      +     
Sbjct: 1   TITQDTPINQ-IFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSI 55

Query: 136 SGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDI 195
            G+  L  L  +    N            L NLT L             +     T    
Sbjct: 56  DGVEYLNNLTQINFSNNQLT-----DITPLKNLTKLVDILMNNNQIADITPLANLTNLTG 110

Query: 196 AMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNL-FSGAIPQQF 254
               N     +  +  LT+L+ L+L  N +     L     +  L   +   +   P   
Sbjct: 111 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--L 168

Query: 255 GELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL 287
             L  L+ LD+S N +S I    L  L N+  L
Sbjct: 169 ANLTTLERLDISSNKVSDISV--LAKLTNLESL 199

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 214 SLHVLDLRENKL-DSGLP-LMP--KGLVTVLLSRNLFSG----AIPQQFGELAQLQHLDL 265
            +  LD++  +L D+    L+P  +    V L     +      I         L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 266 SFNDLSGIPPSVLFSLPNISYLHLASNMLSG 296
             N+L  +    +          +    L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 241 LSRNLFSGA-IPQQFGELAQLQHLDLSFNDLSGIP----PSVLFSLPNISYLHLASNMLS 295
           +     S A   +    L Q Q + L    L+        S L   P ++ L+L SN L 
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 296 GTLPKDLSCGSKLDSIS 312
                 +  G +  S  
Sbjct: 69  DVGVHCVLQGLQTPSCK 85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 21/97 (21%)

Query: 142 VRLQTLTMDTNFFDDN-VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNN 200
           + +Q+L +      D    +    L    V+ L    L       I              
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA----------- 50

Query: 201 ELSGKLPDMSALTSLHVLDLRENKL-DSGLPLMPKGL 236
                   +    +L  L+LR N+L D G+  + +GL
Sbjct: 51  --------LRVNPALAELNLRSNELGDVGVHCVLQGL 79

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 13/92 (14%)

Query: 94  TTLRVLSLVSLGI----WGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVR-----L 144
           + LRVL L    +       L   +    SL  LD+S+N L  A    +   VR     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 145 QTLTMDTNFFDDNVPDWWDSLS----NLTVLS 172
           + L +   ++ + + D   +L     +L V+S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-04
 Identities = 13/108 (12%), Positives = 26/108 (24%), Gaps = 15/108 (13%)

Query: 105 GIWGPLPDKIHRLSSLELLDMSSNFL----FGAIPSGISRLVRLQTLTMDTNFFDDNVPD 160
           G+           S L +L ++   +      ++ + +     L+ L +  N   D    
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 161 W-----WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS 203
                       L  L L       +          L  +      L 
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDR------LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 9e-04
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 16/91 (17%)

Query: 213 TSLHVLDLRENKL-DSGLPLMPKGL-----VTVL-LSRNLFSGAIPQQFGELAQ-----L 260
           + L VL L +  + DS    +   L     +  L LS N    A   Q  E  +     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 261 QHLDLSFNDLSGIPPSVLFSL----PNISYL 287
           + L L     S      L +L    P++  +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 9/76 (11%)

Query: 236 LVTVLLSRNLFSG----AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFS-----LPNISY 286
           L  + L+    S     ++         L+ LDLS N L       L          +  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 287 LHLASNMLSGTLPKDL 302
           L L     S  +   L
Sbjct: 431 LVLYDIYWSEEMEDRL 446

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
               F   +    LD+S   +  +P   L +L  +      +      LP
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLP 239

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 173 LKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS--GLP 230
           LK  Q++ Q    + +    +  A+    L    PD+ A     VL+ R +   +   + 
Sbjct: 4   LKPEQVE-QLKLIMSKRYDGSQQALDLKGLR-SDPDLVAQNIDVVLNRRSSMAATLRIIE 61

Query: 231 LMPKGLVTVLLSRNLFSG--AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLH 288
                L+++ LS N       +     +   L+ L+LS N+L             +  L 
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 289 LASNMLSGTLPKDLS 303
           L  N LS T     +
Sbjct: 122 LDGNSLSDTFRDQST 136

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 8/139 (5%)

Query: 89  TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT 148
             T     R L L    I   + +    L   + +D S N +      G   L RL+TL 
Sbjct: 13  QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLL 69

Query: 149 MDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD 208
           ++ N           +L +LT L L +N L                              
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 209 -----MSALTSLHVLDLRE 222
                +  +  + VLD ++
Sbjct: 130 YRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 24/99 (24%)

Query: 201 ELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQL 260
           EL  +    +       LDLR  K+                        I      L Q 
Sbjct: 6   ELIEQAAQYTNAVRDRELDLRGYKIPV----------------------IENLGATLDQF 43

Query: 261 QHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
             +D S N++  +       L  +  L + +N +     
Sbjct: 44  DAIDFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGE 80

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 253 QFGELAQLQHLDLSFNDLSG-----IPPSVLFSLPNISYLHLASNMLS 295
              E   LQ L L +N++       +   +   +P++ +L L  N  S
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	747
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.19
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.18
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.18
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.86
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.17
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.17
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.04
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.35
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.11
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.91
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.71

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-52  Score=422.16  Aligned_cols=256  Identities=23%  Similarity=0.346  Sum_probs=199.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|+..+.||+|+||+||+|++.+++.||||+++.. ....++|.+|++++++++|||||+++|+|...        +..
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~--------~~~   75 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ--------API   75 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--------SSC
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-cCcHHHHHHHHHHHHhcCCCCcccccceeccC--------Cce
Confidence            467888999999999999999988899999999753 34457899999999999999999999999863        368


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++|||||++|+|.+++...  ...++|..++.++.|||+||+|||+   .+|+||||||+|||+|.++.+||+|||+|+.
T Consensus        76 ~lv~E~~~~g~L~~~l~~~--~~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          76 CLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  150 (263)
T ss_dssp             EEEEECCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC----
T ss_pred             EEEEEecCCCcHHHHhhcc--ccCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchhee
Confidence            9999999999999998754  4568999999999999999999999   8899999999999999999999999999987


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .........           ....++..|+|||++....|+.++|||||||++|||+|+ ++|+.......+........
T Consensus       151 ~~~~~~~~~-----------~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~  219 (263)
T d1sm2a_         151 VLDDQYTSS-----------TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGF  219 (263)
T ss_dssp             -------------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTC
T ss_pred             ccCCCceee-----------cceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcC
Confidence            654322111           112456789999999999999999999999999999995 66665443332222221111


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                           +...   +..++    .++.+++.+||+.||++||||+||+++|+.+.+
T Consensus       220 -----~~~~---p~~~~----~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         220 -----RLYK---PRLAS----THVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             -----CCCC---CTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -----CCCC---ccccC----HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence                 1111   12233    348899999999999999999999999998765

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-51  Score=423.26  Aligned_cols=261  Identities=21%  Similarity=0.335  Sum_probs=203.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||+||+|+++.  .||||+++..  +....+.|.+|+++|++++|||||+++|++.+         
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~---------   75 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA---------   75 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS---------
T ss_pred             cccEEEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec---------
Confidence            3678899999999999999998753  5999999743  34556789999999999999999999998864         


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      +..++|||||++|+|.++++..  ...++|..++.++.|||+||+|||+   .+||||||||+|||++.++.+||+|||+
T Consensus        76 ~~~~lv~Ey~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFGl  150 (276)
T d1uwha_          76 PQLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGL  150 (276)
T ss_dssp             SSCEEEEECCCEEEHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCCCC
T ss_pred             cEEEEEEecCCCCCHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEccccc
Confidence            2579999999999999999754  3469999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeec---cCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI---QRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNE  672 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~  672 (747)
                      |+..........          .....++..|+|||++..   ..|+.++|||||||++|||+||+.||.... ...+..
T Consensus       151 a~~~~~~~~~~~----------~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~  220 (276)
T d1uwha_         151 ATVKSRWSGSHQ----------FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIF  220 (276)
T ss_dssp             SCC----------------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH
T ss_pred             eeeccccCCccc----------ccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHH
Confidence            977643222111          011346778999998854   358999999999999999999999987533 222222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      ..........    .+.....+++    .+.+++.+||+.||++||||.||+++|+.+.+.
T Consensus       221 ~~~~~~~~p~----~~~~~~~~~~----~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         221 MVGRGYLSPD----LSKVRSNCPK----AMKRLMAECLKKKRDERPLFPQILASIELLARS  273 (276)
T ss_dssp             HHHHTSCCCC----GGGSCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCCc----chhccccchH----HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence            2221111100    0112223343    488999999999999999999999999988764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-51  Score=425.81  Aligned_cols=262  Identities=19%  Similarity=0.303  Sum_probs=196.1

Q ss_pred             CCCccccccCCCCeeEEEEEeC-CC---cEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          441 NFDSLSFMGEGSRGKLYKGRLE-NG---TYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~~-~g---~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      +|++.++||+|+||+||+|+.. ++   ..||||++... .....+.|.+|+++|++++|||||+++|+|...       
T Consensus        27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-------   99 (299)
T d1jpaa_          27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS-------   99 (299)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-------
T ss_pred             hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeC-------
Confidence            3556689999999999999863 33   36899988643 344557899999999999999999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++|||||++|+|.+++...  ...++|.+++.++.|||+||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       100 -~~~~iv~Ey~~~g~L~~~~~~~--~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG  173 (299)
T d1jpaa_         100 -TPVMIITEFMENGSLDSFLRQN--DGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFG  173 (299)
T ss_dssp             -SSCEEEEECCTTEEHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             -CEEEEEEEecCCCcceeeeccc--cCCCCHHHHHHHHHHHHHHHHHHhh---CCCccCccccceEEECCCCcEEECCcc
Confidence             3689999999999999988764  4469999999999999999999999   889999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~  674 (747)
                      +|+.+.........       .+.....++..|+|||.+....++.++|||||||++|||+| |+.||.......+....
T Consensus       174 la~~~~~~~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i  246 (299)
T d1jpaa_         174 LSRFLEDDTSDPTY-------TSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAI  246 (299)
T ss_dssp             -----------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHH
T ss_pred             cceEccCCCCccee-------eecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence            99876543322111       01111234567899999998999999999999999999998 79888754433222222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      ....        .+.....++    ..+.+++.+||+.||++||||.||++.|+.+.+.+
T Consensus       247 ~~~~--------~~~~~~~~~----~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~p  294 (299)
T d1jpaa_         247 EQDY--------RLPPPMDCP----SALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNP  294 (299)
T ss_dssp             HTTC--------CCCCCTTCC----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             HcCC--------CCCCCccch----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcCh
Confidence            1110        011122333    34889999999999999999999999999887643

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-50  Score=416.27  Aligned_cols=254  Identities=20%  Similarity=0.304  Sum_probs=203.4

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||+||+|++++++.||||+++.. ....+.|.+|+++|++++|||||+++|+|.+         +..
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~---------~~~   82 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ---------EPI   82 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS---------SSC
T ss_pred             HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC-cCCHHHHHHHHHHHHhCCCCCEeEEEeeecc---------CCe
Confidence            578888999999999999999988899999999743 3345789999999999999999999998864         246


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++|||||++|+|.+++.... ...++|..++.|+.|||+||.|||+   .+|+||||||+|||++.++.+||+|||+|+.
T Consensus        83 ~iv~Ey~~~g~L~~~~~~~~-~~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~  158 (272)
T d1qpca_          83 YIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARL  158 (272)
T ss_dssp             EEEEECCTTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccccceEE
Confidence            89999999999999876431 2358999999999999999999999   8999999999999999999999999999987


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~~~~~~~  678 (747)
                      +.........           ...++..|+|||++....++.++|||||||++|||+|| ++|+.......+....... 
T Consensus       159 ~~~~~~~~~~-----------~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~-  226 (272)
T d1qpca_         159 IEDNEYTARE-----------GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG-  226 (272)
T ss_dssp             CSSSCEECCT-----------TCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-
T ss_pred             ccCCcccccc-----------ccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhc-
Confidence            6543221111           12356679999999888999999999999999999996 5555443332222211111 


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                             ..+..+..+++    .+.+++.+||+.||++||||.||++.|+..
T Consensus       227 -------~~~~~p~~~~~----~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~  267 (272)
T d1qpca_         227 -------YRMVRPDNCPE----ELYQLMRLCWKERPEDRPTFDYLRSVLEDF  267 (272)
T ss_dssp             -------CCCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -------CCCCCcccChH----HHHHHHHHHcCCCHhHCcCHHHHHHHhhhh
Confidence                   11112223344    488999999999999999999999999865

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-50  Score=416.38  Aligned_cols=257  Identities=19%  Similarity=0.287  Sum_probs=207.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++.. ....++|.+|+++|++++|||||+++|+|.+.        +
T Consensus        16 ~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~--------~   86 (287)
T d1opja_          16 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--------P   86 (287)
T ss_dssp             GGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT-CSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--------S
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc-cchHHHHHHHHHHHHhCCCCCEecCCccEeeC--------C
Confidence            35788889999999999999996 46899999998743 34567899999999999999999999999763        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++|||||++|+|.+++... ....++|..++.|+.|||+||+|||+   .+|+||||||+|||++.++.+||+|||+|
T Consensus        87 ~~~iv~E~~~~g~l~~~l~~~-~~~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG~a  162 (287)
T d1opja_          87 PFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLS  162 (287)
T ss_dssp             SCEEEEECCTTCBHHHHHHHS-CTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCCT
T ss_pred             eeEEEeecccCcchHHHhhhc-cccchHHHHHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEccccce
Confidence            789999999999999998753 24579999999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCC-CCCCChhhhHHHHHhc
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI-VTGKGEAFLLNEMASF  676 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~-p~~~~~~~~~~~~~~~  676 (747)
                      +..........           ....++..|+|||++....|+.|+|||||||++|||++|.. |+...+...+......
T Consensus       163 ~~~~~~~~~~~-----------~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~  231 (287)
T d1opja_         163 RLMTGDTYTAH-----------AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK  231 (287)
T ss_dssp             TTCCSSSSEEE-----------TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHT
T ss_pred             eecCCCCceee-----------ccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhc
Confidence            87654322111           11345678999999999999999999999999999999754 4544443333332221


Q ss_pred             cCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       677 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                      ..        .+..+..+++    .+.+|+.+||+.||++||||.||++.|+.+.
T Consensus       232 ~~--------~~~~~~~~~~----~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~  274 (287)
T d1opja_         232 DY--------RMERPEGCPE----KVYELMRACWQWNPSDRPSFAEIHQAFETMF  274 (287)
T ss_dssp             TC--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             CC--------CCCCCccchH----HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            11        1122223343    4889999999999999999999999987653

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-50  Score=406.29  Aligned_cols=252  Identities=22%  Similarity=0.317  Sum_probs=206.7

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|+..+.||+|+||+||+|++++++.||||+++... ...++|.+|++++++++|||||+++|+|.+.        +.+
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~-~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~--------~~~   74 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--------RPI   74 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSS-SCHHHHHHHHHHHHTCCCTTBCCEEEEECCS--------SSE
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCc-CCHHHHHHHHHHHHhcCCCceeeEEEEEeeC--------Cce
Confidence            5789999999999999999999889999999998543 3457899999999999999999999999763        378


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.+++...  ...+++..+.+++.|+|+||+|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus        75 ~iv~Ey~~~g~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          75 FIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRY  149 (258)
T ss_dssp             EEEEECCTTEEHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCCB
T ss_pred             EEEEEccCCCcHHHhhhcc--ccCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccceeEEEcCCCcEEECcchhhee
Confidence            9999999999999987653  3468999999999999999999999   8999999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      ..+.......           ...++..|+|||.+....++.|+|||||||++|||+| |+.||.......+........
T Consensus       150 ~~~~~~~~~~-----------~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~  218 (258)
T d1k2pa_         150 VLDDEYTSSV-----------GSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGL  218 (258)
T ss_dssp             CSSSSCCCCC-----------CSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTC
T ss_pred             ccCCCceeec-----------ccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCC
Confidence            6543221111           1234567899999999999999999999999999998 799987655443333222111


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                           +...|   ..++    ..+.+++.+||+.||++||||.||+++|.
T Consensus       219 -----~~~~p---~~~~----~~l~~li~~cl~~dP~~RPt~~eil~~L~  256 (258)
T d1k2pa_         219 -----RLYRP---HLAS----EKVYTIMYSCWHEKADERPTFKILLSNIL  256 (258)
T ss_dssp             -----CCCCC---TTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             -----CCCCc---cccc----HHHHHHHHHHccCCHhHCcCHHHHHHHhh
Confidence                 11111   2233    34889999999999999999999999985

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-50  Score=412.27  Aligned_cols=259  Identities=19%  Similarity=0.266  Sum_probs=205.4

Q ss_pred             hCCCcccc-ccCCCCeeEEEEEeC---CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSF-MGEGSRGKLYKGRLE---NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~-iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|.+.+. ||+|+||+||+|.++   ++..||||+++.. .....+.|.+|+++|++++|||||+++|+|..       
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-------   80 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-------   80 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-------
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-------
Confidence            45556664 999999999999753   3568999999753 34456789999999999999999999999864       


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..++|||||++|+|.+++...  ...++|..+..++.|||+||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        81 --~~~~lvmE~~~~g~L~~~l~~~--~~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DF  153 (285)
T d1u59a_          81 --EALMLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDF  153 (285)
T ss_dssp             --SSEEEEEECCTTEEHHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCC
T ss_pred             --CeEEEEEEeCCCCcHHHHhhcc--ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccc
Confidence              2579999999999999987653  4569999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |+|+.+..........         ....++..|+|||++....++.++|||||||++|||+| |+.||.......+...
T Consensus       154 Gla~~~~~~~~~~~~~---------~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~  224 (285)
T d1u59a_         154 GLSKALGADDSYYTAR---------SAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAF  224 (285)
T ss_dssp             TTCEECTTCSCEECCC---------CSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHH
T ss_pred             hhhhcccccccccccc---------cccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            9998765432221110         01235567899999988999999999999999999998 8999975443333222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      ...+.        .+..+..+++    .+.+|+.+||+.||++||||.+|++.|+.....
T Consensus       225 i~~~~--------~~~~p~~~~~----~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         225 IEQGK--------RMECPPECPP----ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             HHTTC--------CCCCCTTCCH----HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHcCC--------CCCCCCcCCH----HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            22111        1112233444    488999999999999999999999999877553

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-49  Score=410.18  Aligned_cols=248  Identities=19%  Similarity=0.313  Sum_probs=204.4

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ++|++.+.||+|+||+||+|+ ..+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.        +.
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~--------~~   91 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG--------DE   91 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEET--------TE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEEC--------CE
Confidence            469999999999999999999 467999999999866666678899999999999999999999999874        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++|||||++|+|.+++.+    ..+++.++..++.||+.||+|||+   .+||||||||+|||++.++.+||+|||+|+
T Consensus        92 ~~ivmEy~~gg~L~~~~~~----~~l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~  164 (293)
T d1yhwa1          92 LWVVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (293)
T ss_dssp             EEEEEECCTTCBHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEEecCCCcHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcHHHeEECCCCcEeeccchhhe
Confidence            9999999999999998764    358999999999999999999999   899999999999999999999999999998


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~~~  677 (747)
                      .........            ...++++.|+|||++....|+.++|||||||++|||+||+.||..... ..+..+....
T Consensus       165 ~~~~~~~~~------------~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~  232 (293)
T d1yhwa1         165 QITPEQSKR------------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNG  232 (293)
T ss_dssp             ECCSTTCCB------------CCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHC
T ss_pred             eeccccccc------------cccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCC
Confidence            654322111            113567889999999999999999999999999999999999975443 2222222211


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .       .+...    +...+..+.+++.+||+.||++|||+.|+++
T Consensus       233 ~-------~~~~~----~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         233 T-------PELQN----PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             S-------CCCSS----GGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             C-------CCCCC----cccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1       01111    1223344889999999999999999999975

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-49  Score=404.41  Aligned_cols=245  Identities=20%  Similarity=0.307  Sum_probs=203.1

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++...   +....+.+.+|+++|++++|||||++++++.+.       
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-------   78 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA-------   78 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-------
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEEC-------
Confidence            5799999999999999999995 56999999999743   234457789999999999999999999999873       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++|||||++|+|.+++...   ..+++..+..++.||++||+|||+   .+||||||||+|||++.++.+||+|||
T Consensus        79 -~~~~ivmEy~~~g~L~~~l~~~---~~l~e~~~~~i~~qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG  151 (263)
T d2j4za1          79 -TRVYLILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFG  151 (263)
T ss_dssp             -SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             -CEEEEEEeecCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeeeeccccceecCCCCEeecccc
Confidence             4799999999999999999763   459999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~  674 (747)
                      +|+.......              ...++++.|+|||++.+..|+.++|||||||++|||+||+.||........ ..+.
T Consensus       152 ~a~~~~~~~~--------------~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~  217 (263)
T d2j4za1         152 WSVHAPSSRR--------------TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS  217 (263)
T ss_dssp             SCSCCCCCCC--------------EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH
T ss_pred             eeeecCCCcc--------------cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence            9976543211              123578899999999999999999999999999999999999976543322 2221


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..          ++.++..++    ..+.+++.+||+.||++|||+.|+++.
T Consensus       218 ~~----------~~~~p~~~s----~~~~~li~~~L~~dp~~R~t~~eil~h  255 (263)
T d2j4za1         218 RV----------EFTFPDFVT----EGARDLISRLLKHNPSQRPMLREVLEH  255 (263)
T ss_dssp             TT----------CCCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             cC----------CCCCCccCC----HHHHHHHHHHccCCHhHCcCHHHHHcC
Confidence            11          111122233    348899999999999999999999863

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-50  Score=412.08  Aligned_cols=256  Identities=19%  Similarity=0.249  Sum_probs=194.5

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++..  .....+.+.+|+++|++++|||||++++++.+..      .
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~------~   77 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT------N   77 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC---------
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCC------C
Confidence            6799999999999999999984 67999999999754  3344577899999999999999999999987532      3


Q ss_pred             ceEEEEEeccCCCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCCCCceeecCCCcEEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENC-PENVLKWSDRLAILIGVAKAVHFLHSSV--ISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                      ..+++|||||++|+|.+++.... ....+++..++.++.|++.||+|||+..  ..+||||||||+|||++.++.+||+|
T Consensus        78 ~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~D  157 (269)
T d2java1          78 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGD  157 (269)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECC
T ss_pred             CEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEee
Confidence            46899999999999999986421 2456999999999999999999999832  13499999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+|+..........            ..++++.|+|||++....|+.++|||||||++|||+||+.||.......+...
T Consensus       158 FG~a~~~~~~~~~~~------------~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~  225 (269)
T d2java1         158 FGLARILNHDTSFAK------------AFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGK  225 (269)
T ss_dssp             HHHHHHC-----------------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred             ccceeecccCCCccc------------cCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHH
Confidence            999987654322111            13567789999999999999999999999999999999999976544332222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .....   .     +.++..+++    ++.+++.+||+.||.+|||+.|+++
T Consensus       226 i~~~~---~-----~~~~~~~s~----~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         226 IREGK---F-----RRIPYRYSD----ELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHHTC---C-----CCCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHcCC---C-----CCCCcccCH----HHHHHHHHHcCCChhHCcCHHHHHh
Confidence            11111   0     112223343    4889999999999999999999975

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-50  Score=409.74  Aligned_cols=253  Identities=19%  Similarity=0.252  Sum_probs=198.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.        
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~--------   75 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG--------   75 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEET--------
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccC--------
Confidence            36799999999999999999995 579999999997543 23346789999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      +..++|||||++|+|.+++..   ...+++.++..++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        76 ~~~~ivmEy~~gg~L~~~l~~---~~~l~e~~~~~i~~qi~~al~ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~  149 (271)
T d1nvra_          76 NIQYLFLEYCSGGELFDRIEP---DIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGL  149 (271)
T ss_dssp             TEEEEEEECCTTEEGGGGSBT---TTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceeEEEEeccCCCcHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHH---cCCccCcccHHHEEECCCCCEEEccchh
Confidence            489999999999999999975   3469999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      |+..........          ....+|++.|+|||++....+ +.++|||||||++|||+||+.||.............
T Consensus       150 a~~~~~~~~~~~----------~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~  219 (271)
T d1nvra_         150 ATVFRYNNRERL----------LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDW  219 (271)
T ss_dssp             CEECEETTEECC----------BCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHH
T ss_pred             heeeccCCcccc----------ccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHH
Confidence            987654322111          011357889999999987765 678999999999999999999996543221111111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .. ....     ...    ....+..+.+++.+||+.||++|||++|+++
T Consensus       220 ~~-~~~~-----~~~----~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         220 KE-KKTY-----LNP----WKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             HT-TCTT-----STT----GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hc-CCCC-----CCc----cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            10 0000     000    1122334788999999999999999999875

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-50  Score=411.91  Aligned_cols=250  Identities=20%  Similarity=0.262  Sum_probs=202.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.        +.
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--------~~   83 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYE--------NN   83 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEET--------TE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC--------Ce
Confidence            4688899999999999999995 57999999999876666667899999999999999999999999874        47


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                      .++|||||++|+|.+++.+.  ...+++..+..++.||++||.|||+   .+|+||||||+|||++.++.+||+|||+|+
T Consensus        84 ~~lvmEy~~~g~L~~~~~~~--~~~l~e~~~~~i~~qi~~gL~ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~  158 (288)
T d2jfla1          84 LWILIEFCAGGAVDAVMLEL--ERPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSA  158 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEecCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEEEeecChhheeECCCCCEEEEechhhh
Confidence            99999999999999987653  3469999999999999999999999   899999999999999999999999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee-----ccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHH
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-----IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNE  672 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~  672 (747)
                      ..........            ..++++.|+|||++.     ...|+.++|||||||++|||+||+.||...... .+..
T Consensus       159 ~~~~~~~~~~------------~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~  226 (288)
T d2jfla1         159 KNTRTIQRRD------------SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLK  226 (288)
T ss_dssp             ECHHHHHHHT------------CCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHH
T ss_pred             ccCCCccccc------------ccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHH
Confidence            6543322111            134677899999873     456899999999999999999999999754433 2322


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      +... ...   ..       ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus       227 i~~~-~~~---~~-------~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         227 IAKS-EPP---TL-------AQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             HHHS-CCC---CC-------SSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHcC-CCC---CC-------CccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            2221 100   00       111223345889999999999999999999976

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-49  Score=405.96  Aligned_cols=261  Identities=19%  Similarity=0.294  Sum_probs=198.1

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC-C----cEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN-G----TYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~-g----~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      +.|+..++||+|+||+||+|+++. +    ..||||+++.. ......+|.+|+++|++++|||||+++|+|.+.     
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~-----   81 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY-----   81 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-----
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecC-----
Confidence            357778899999999999998643 2    47999999743 233456789999999999999999999999763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                         ...++|||||.+|++.+++...  ...++|..++.++.||++||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus        82 ---~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~D  153 (283)
T d1mqba_          82 ---KPMMIITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSD  153 (283)
T ss_dssp             ---SSEEEEEECCTTEEHHHHHHHT--TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECC
T ss_pred             ---CceEEEEEecccCcchhhhhcc--cccccHHHHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEcc
Confidence               3789999999999999887654  4569999999999999999999999   8899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~~~~~~~~~  672 (747)
                      ||+|+.+.........         .....++..|+|||.+....++.++|||||||++|||+|| .+|+.......+..
T Consensus       154 FGla~~~~~~~~~~~~---------~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~  224 (283)
T d1mqba_         154 FGLSRVLEDDPEATYT---------TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMK  224 (283)
T ss_dssp             CCC--------------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHH
T ss_pred             cchhhcccCCCccceE---------eccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHH
Confidence            9999876543221111         0112356679999999999999999999999999999996 44444333322222


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .....        ..+.....++    ..+.+|+.+||+.||++||||.||++.|+.+.+..
T Consensus       225 ~i~~~--------~~~~~~~~~~----~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~p  274 (283)
T d1mqba_         225 AINDG--------FRLPTPMDCP----SAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP  274 (283)
T ss_dssp             HHHTT--------CCCCCCTTCB----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             HHhcc--------CCCCCchhhH----HHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhCc
Confidence            21111        1111222333    34889999999999999999999999999877643

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-49  Score=405.94  Aligned_cols=250  Identities=20%  Similarity=0.280  Sum_probs=198.1

Q ss_pred             ccccCCCCeeEEEEEeC---CCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEE
Q 044236          446 SFMGEGSRGKLYKGRLE---NGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF  520 (747)
Q Consensus       446 ~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~  520 (747)
                      ++||+|+||+||+|.++   .++.||||+++..  +....+.|.+|+++|++++|||||+++|+|..         +..+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~---------~~~~   83 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA---------ESWM   83 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES---------SSEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc---------CCEE
Confidence            46999999999999853   3578999999643  23345689999999999999999999999854         2478


Q ss_pred             EEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccccccc
Q 044236          521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM  600 (747)
Q Consensus       521 lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  600 (747)
                      ||||||++|+|.++++..   ..++|..++.++.|||+||+|||+   .+||||||||+|||++.++.+||+|||+|+..
T Consensus        84 lvmE~~~~g~L~~~l~~~---~~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~  157 (277)
T d1xbba_          84 LVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKAL  157 (277)
T ss_dssp             EEEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEEcCCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhc
Confidence            999999999999999763   459999999999999999999999   88999999999999999999999999999876


Q ss_pred             cccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccCc
Q 044236          601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQ  679 (747)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~~  679 (747)
                      ..........         ....++..|+|||.+....++.++|||||||++|||+| |+.||.......+........ 
T Consensus       158 ~~~~~~~~~~---------~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~-  227 (277)
T d1xbba_         158 RADENYYKAQ---------THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGE-  227 (277)
T ss_dssp             CTTCSEEEC-------------CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC-
T ss_pred             cccccccccc---------cccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCC-
Confidence            5432221110         11235567999999999999999999999999999998 899997654443333222111 


Q ss_pred             CCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHH
Q 044236          680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAA  731 (747)
Q Consensus       680 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  731 (747)
                             .+..+..+++    .+.+|+.+||+.||++||||.||+.+|+..-
T Consensus       228 -------~~~~p~~~~~----~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         228 -------RMGCPAGCPR----EMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             -------CCCCCTTCCH----HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             -------CCCCCcccCH----HHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence                   1112233444    4889999999999999999999999998653

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-49  Score=415.35  Aligned_cols=258  Identities=18%  Similarity=0.253  Sum_probs=202.2

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++.. +....+.+.+|+.+|++++|||||+++++|.+.        
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~--------   76 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD--------   76 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECS--------
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--------
Confidence            57899999999999999999994 67999999999754 334456789999999999999999999999873        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++|||||++|+|.+++.+.   ..+++..+..++.|+++||.|||+.  .+|+||||||+|||++.++.+||+|||+
T Consensus        77 ~~~~iVmEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGl  151 (322)
T d1s9ja_          77 GEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGV  151 (322)
T ss_dssp             SEEEEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred             CEEEEEEEcCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCC
Confidence            4799999999999999999763   3599999999999999999999972  3799999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHhc
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF  676 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~~  676 (747)
                      |+...+....              ..+++..|+|||++.+..|+.++||||+||++|||++|+.||...+..........
T Consensus       152 a~~~~~~~~~--------------~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~  217 (322)
T d1s9ja_         152 SGQLIDSMAN--------------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGC  217 (322)
T ss_dssp             CHHHHHHTC-----------------CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC--
T ss_pred             ccccCCCccc--------------cccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence            9765432111              13678899999999999999999999999999999999999875443222111100


Q ss_pred             cCcCCcc---------------------------cc-------ccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHH
Q 044236          677 GSQDGRR---------------------------RI-------VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED  722 (747)
Q Consensus       677 ~~~~~~~---------------------------~~-------~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~e  722 (747)
                      .......                           +.       ..+...   ....+.++.+++.+||+.||.+|||++|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~dli~~~L~~dP~~R~ta~e  294 (322)
T d1s9ja_         218 QVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLP---SGVFSLEFQDFVNKCLIKNPAERADLKQ  294 (322)
T ss_dssp             ----------------------------CCCCHHHHHHHHHTSCCCCCC---BTTBCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCccCc---cccCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            0000000                           00       000000   0112345889999999999999999999


Q ss_pred             HHHH
Q 044236          723 VLWN  726 (747)
Q Consensus       723 vl~~  726 (747)
                      ++++
T Consensus       295 ~L~H  298 (322)
T d1s9ja_         295 LMVH  298 (322)
T ss_dssp             HHTS
T ss_pred             HhhC
Confidence            9875

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-49  Score=413.08  Aligned_cols=256  Identities=21%  Similarity=0.281  Sum_probs=200.8

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC-C-----cEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN-G-----TYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~-g-----~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~  511 (747)
                      ++|++.+.||+|+||+||+|+... +     ..||||++... .......+.+|+.+|.++ +|||||+++|+|.+.   
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~---  113 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS---  113 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC---
Confidence            578889999999999999998532 2     36999998643 333446789999999998 899999999999874   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCC--------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCP--------------------ENVLKWSDRLAILIGVAKAVHFLHSSVISGS  571 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~--------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i  571 (747)
                           +..++|||||++|+|.++++....                    ...++|..++.|+.||++||+|||+   .+|
T Consensus       114 -----~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~---~~I  185 (325)
T d1rjba_         114 -----GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSC  185 (325)
T ss_dssp             -----SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             -----CeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCe
Confidence                 368999999999999999975421                    2358999999999999999999999   899


Q ss_pred             ccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHH
Q 044236          572 FSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI  651 (747)
Q Consensus       572 vHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvv  651 (747)
                      |||||||+|||++.++.+||+|||+|+...........          ....+++.|+|||++....|+.++|||||||+
T Consensus       186 iHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~----------~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvi  255 (325)
T d1rjba_         186 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVR----------GNARLPVKWMAPESLFEGIYTIKSDVWSYGIL  255 (325)
T ss_dssp             EETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEE----------TTEEECGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             eeccCchhccccccCCeEEEeeccccccccCCCceeee----------ccccCCCccCChHHHcCCCCCcceeccchhHH
Confidence            99999999999999999999999999876543321111          11356778999999999999999999999999


Q ss_pred             HHHHhh-CCCCCCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          652 LLESLV-GPIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       652 l~Ellt-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      +|||+| |+.||..... ..+..+.....        .+..+..++    ..+.+|+.+||+.||++||||+||+++|.
T Consensus       256 l~emlt~g~~Pf~~~~~~~~~~~~~~~~~--------~~~~p~~~~----~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         256 LWEIFSLGVNPYPGIPVDANFYKLIQNGF--------KMDQPFYAT----EEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             HHHHTTTSCCSSTTCCCSHHHHHHHHTTC--------CCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHhcCC--------CCCCCCcCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            999998 8999875432 22333322111        111222333    34889999999999999999999999985

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-48  Score=406.91  Aligned_cols=260  Identities=21%  Similarity=0.274  Sum_probs=205.9

Q ss_pred             HhhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGS  510 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~  510 (747)
                      ..++|++.+.||+|+||+||+|+++      +++.||||+++... ....++|.+|+++|++++||||++++++|...  
T Consensus        11 p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~--   88 (301)
T d1lufa_          11 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG--   88 (301)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS--
T ss_pred             CHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccC--
Confidence            4678999999999999999999853      46789999997543 33456799999999999999999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCC---------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENC---------------------PENVLKWSDRLAILIGVAKAVHFLHSSVIS  569 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  569 (747)
                            ...++||||+++|+|.++++...                     ....++|..++.|+.|++.||+|||+   .
T Consensus        89 ------~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~---~  159 (301)
T d1lufa_          89 ------KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---R  159 (301)
T ss_dssp             ------SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             ------CceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc---C
Confidence                  36899999999999999886421                     12348999999999999999999999   8


Q ss_pred             CcccCCCCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehh
Q 044236          570 GSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFG  649 (747)
Q Consensus       570 ~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfG  649 (747)
                      +||||||||+|||+|.++.+||+|||+|+.+.+.......          ....++..|+|||.+....|+.|+||||||
T Consensus       160 ~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~t~ksDVwS~G  229 (301)
T d1lufa_         160 KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKAD----------GNDAIPIRWMPPESIFYNRYTTESDVWAYG  229 (301)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC--------------CCBCGGGCCHHHHHHCCCCHHHHHHHHH
T ss_pred             CeEeeEEcccceEECCCCcEEEccchhheeccCCcccccc----------CCCCcCcCcCCHHHHccCCCChhhhhccch
Confidence            8999999999999999999999999999866543322111          012355678999999999999999999999


Q ss_pred             HHHHHHhhCC-CCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHH
Q 044236          650 FILLESLVGP-IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQ  728 (747)
Q Consensus       650 vvl~Elltg~-~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  728 (747)
                      |++|||++|. +|+.......+.......   ..     +..+..+++    ++.+|+.+||+.||++||||.||+++|+
T Consensus       230 vvl~ell~~~~~p~~~~~~~e~~~~v~~~---~~-----~~~p~~~~~----~~~~li~~cl~~~P~~RPt~~ev~~~L~  297 (301)
T d1lufa_         230 VVLWEIFSYGLQPYYGMAHEEVIYYVRDG---NI-----LACPENCPL----ELYNLMRLCWSKLPADRPSFCSIHRILQ  297 (301)
T ss_dssp             HHHHHHHTTTCCTTTTSCHHHHHHHHHTT---CC-----CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             hhHHHHHccCCCCCCCCCHHHHHHHHHcC---CC-----CCCCccchH----HHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence            9999999994 566654433322222111   11     112223344    4889999999999999999999999998


Q ss_pred             HH
Q 044236          729 YA  730 (747)
Q Consensus       729 ~~  730 (747)
                      ++
T Consensus       298 ~i  299 (301)
T d1lufa_         298 RM  299 (301)
T ss_dssp             HT
T ss_pred             Hh
Confidence            75

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-48  Score=394.66  Aligned_cols=249  Identities=22%  Similarity=0.230  Sum_probs=193.9

Q ss_pred             CccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          443 DSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       443 ~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      +..+.||+|+||+||+|+. .+++.||||++...  .....+.+.+|+++|++++|||||+++++|....    .....+
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~----~~~~~~   87 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV----KGKKCI   87 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES----SSCEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeecc----ccCCEE
Confidence            4456799999999999995 56899999999754  2345577999999999999999999999987532    123578


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec-CCCcEEEecccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD-EHRIAKLSDYGISI  598 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~  598 (747)
                      ++|||||++|+|.+++.+.   ..+++..+..++.||++||+|||+.. ++|+||||||+|||++ .++.+||+|||+|+
T Consensus        88 ~ivmE~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~gl~yLH~~~-~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~  163 (270)
T d1t4ha_          88 VLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  163 (270)
T ss_dssp             EEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEEeCCCCCcHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHHHCC-CCEEeCCcChhhceeeCCCCCEEEeecCcce
Confidence            9999999999999999763   46899999999999999999999832 2399999999999996 57899999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHHhcc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMASFG  677 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~~~~  677 (747)
                      .......              ...+|++.|+|||++.. .|+.++|||||||++|||+||+.||.... ...+.......
T Consensus       164 ~~~~~~~--------------~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~  228 (270)
T d1t4ha_         164 LKRASFA--------------KAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG  228 (270)
T ss_dssp             GCCTTSB--------------EESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTT
T ss_pred             eccCCcc--------------CCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcC
Confidence            5432211              12356788999998854 69999999999999999999999996432 22222111111


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                         .    ..+.....+++    ++.+++.+||+.||++|||+.|+++
T Consensus       229 ---~----~~~~~~~~~~~----~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         229 ---V----KPASFDKVAIP----EVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             ---C----CCGGGGGCCCH----HHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ---C----CCcccCccCCH----HHHHHHHHHccCCHhHCcCHHHHhC
Confidence               0    01111122333    3789999999999999999999975

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-48  Score=397.96  Aligned_cols=252  Identities=21%  Similarity=0.320  Sum_probs=198.8

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|+..+.||+|+||.||+|+++ |+.||||+++..  ...+.+.+|++++++++|||||+++|+|.+.       .+.+
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~-------~~~~   76 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEE-------KGGL   76 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC---------CC
T ss_pred             HHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEec-------CCcE
Confidence            56788899999999999999984 788999999743  3457899999999999999999999998753       2357


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++||||+++|+|.++++... ...++|..+++|+.||+.||.|||+   .+|+||||||+|||++.++.+|++|||+++.
T Consensus        77 ~lv~ey~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~  152 (262)
T d1byga_          77 YIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  152 (262)
T ss_dssp             EEEECCCTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             EEEEeccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeeccccccee
Confidence            99999999999999997531 2358999999999999999999999   8999999999999999999999999999976


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHHHhccC
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGS  678 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~~~~~~  678 (747)
                      .......               ..++..|+|||.+....++.++|||||||++|||+| |++|+.......+....... 
T Consensus       153 ~~~~~~~---------------~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~-  216 (262)
T d1byga_         153 ASSTQDT---------------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG-  216 (262)
T ss_dssp             ------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTT-
T ss_pred             cCCCCcc---------------ccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcC-
Confidence            4332111               134567889999988999999999999999999998 68888765544433322211 


Q ss_pred             cCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          679 QDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       679 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                             ..+.....+++    .+.+++.+||+.||.+||||.||+++|+.+..
T Consensus       217 -------~~~~~~~~~~~----~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         217 -------YKMDAPDGCPP----AVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             -------CCCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------CCCCCCccCCH----HHHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence                   11222233343    48899999999999999999999999987743

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-48  Score=400.65  Aligned_cols=253  Identities=21%  Similarity=0.296  Sum_probs=198.8

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      ++|++.+.||+|+||+||+|+.++++.||||+++.. ....+.|.+|+.+|++++|||||+++|+|.+         +..
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~---------~~~   86 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE---------EPI   86 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS---------SSC
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-cCCHHHHHHHHHHHHhcccCCEeEEEEEEec---------CCe
Confidence            578899999999999999999988888999999743 3345789999999999999999999999854         247


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++|||||++|+|..++.... ...++|.+++.|+.|||+||+|||+   .+|+||||||+|||||.++.+||+|||+|+.
T Consensus        87 ~lv~Ey~~~g~l~~~~~~~~-~~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGla~~  162 (285)
T d1fmka3          87 YIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARL  162 (285)
T ss_dssp             EEEECCCTTCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC-
T ss_pred             EEEEEecCCCchhhhhhhcc-cccchHHHHHHHHHHHHHHHHHHhh---hheecccccceEEEECCCCcEEEcccchhhh
Confidence            99999999999998886531 2359999999999999999999999   7899999999999999999999999999987


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCC-CCCCCChhh-hHHHHHhcc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP-IVTGKGEAF-LLNEMASFG  677 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~-~p~~~~~~~-~~~~~~~~~  677 (747)
                      ..+......           ....++..|+|||.+....++.++|||||||++|||+||. +|+...... .+..+... 
T Consensus       163 ~~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~-  230 (285)
T d1fmka3         163 IEDNEYTAR-----------QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG-  230 (285)
T ss_dssp             ------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-
T ss_pred             ccCCCceee-----------ccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhc-
Confidence            654322111           1124566789999999999999999999999999999974 444433322 23222211 


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                              ..+.....+++    ++.+++.+||+.||++||||.+|+++|+..
T Consensus       231 --------~~~~~~~~~~~----~l~~li~~cl~~dP~~Rps~~~i~~~L~~~  271 (285)
T d1fmka3         231 --------YRMPCPPECPE----SLHDLMCQCWRKEPEERPTFEYLQAFLEDY  271 (285)
T ss_dssp             --------CCCCCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred             --------CCCCCCcccCH----HHHHHHHHHcccCHhHCcCHHHHHHHHhhh
Confidence                    01112233343    488999999999999999999999988764

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-48  Score=396.93  Aligned_cols=258  Identities=21%  Similarity=0.288  Sum_probs=197.4

Q ss_pred             hCCCccccccCCCCeeEEEEEeCC----CcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLEN----GTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.+.||+|+||+||+|+...    +..||||+++... ....+.+.+|+++|++++|||||+++|+|.+       
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-------   79 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-------   79 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-------
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-------
Confidence            578889999999999999998532    4578999886433 3445679999999999999999999999854       


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..++|||||++|+|.+++...  ...+++..++.++.||++||.|||+   .+||||||||+||+++.++.+||+||
T Consensus        80 --~~~~iv~E~~~~g~l~~~~~~~--~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~Df  152 (273)
T d1mp8a_          80 --NPVWIIMELCTLGELRSFLQVR--KYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDF  152 (273)
T ss_dssp             --SSCEEEEECCTTEEHHHHHHHT--TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC-
T ss_pred             --CeEEEEEEeccCCcHHhhhhcc--CCCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEccc
Confidence              2579999999999999987654  4569999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~~  673 (747)
                      |+|+...........           ...++..|+|||++....++.++|||||||++|||+| |.+|+.......+...
T Consensus       153 G~a~~~~~~~~~~~~-----------~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~  221 (273)
T d1mp8a_         153 GLSRYMEDSTYYKAS-----------KGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGR  221 (273)
T ss_dssp             -----------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHH
T ss_pred             hhheeccCCcceecc-----------ceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence            999876533221111           1234567899999999999999999999999999998 7888876544333222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                      .....        .+..+..+++    .+.+++.+||+.||++|||+.||++.|+.+.+..
T Consensus       222 i~~~~--------~~~~~~~~~~----~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~  270 (273)
T d1mp8a_         222 IENGE--------RLPMPPNCPP----TLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE  270 (273)
T ss_dssp             HHTTC--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHcCC--------CCCCCCCCCH----HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence            22111        1112233443    4889999999999999999999999999876644

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-48  Score=401.21  Aligned_cols=249  Identities=18%  Similarity=0.253  Sum_probs=202.3

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++..   +....+.+.+|+++|++++|||||++++++.+.       
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-------   80 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD-------   80 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECS-------
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEEC-------
Confidence            5799999999999999999995 57999999999743   234557899999999999999999999999763       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++|||||++|+|.+++...   +.+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||
T Consensus        81 -~~~~ivmEy~~gg~L~~~~~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG  153 (288)
T d1uu3a_          81 -EKLYFGLSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFG  153 (288)
T ss_dssp             -SEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             -CEEEEEEEccCCCCHHHhhhcc---CCCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCccccccCCCceEEecccc
Confidence             4799999999999999988763   469999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~~  674 (747)
                      +|+.+.........          ...+|++.|+|||++.+..|+.++|||||||++|||+||+.||.......+ ..+.
T Consensus       154 ~a~~~~~~~~~~~~----------~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~  223 (288)
T d1uu3a_         154 TAKVLSPESKQARA----------NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII  223 (288)
T ss_dssp             TCEECC--------------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             cceecccCCccccc----------ccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHH
Confidence            99876533221110          113578899999999999999999999999999999999999976544332 2222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ..          +..++..+++    .+.+|+.+||+.||++|||++|++..
T Consensus       224 ~~----------~~~~p~~~s~----~~~~li~~~L~~dP~~R~t~~e~~~~  261 (288)
T d1uu3a_         224 KL----------EYDFPEKFFP----KARDLVEKLLVLDATKRLGCEEMEGY  261 (288)
T ss_dssp             TT----------CCCCCTTCCH----HHHHHHHTTSCSSGGGSTTSGGGTCH
T ss_pred             cC----------CCCCCccCCH----HHHHHHHHHccCCHhHCcCHHHHcCC
Confidence            11          0111222333    48899999999999999999998654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.8e-48  Score=401.49  Aligned_cols=252  Identities=19%  Similarity=0.230  Sum_probs=189.7

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      .+.|++.+.||+|+||+||+|+. .+|+.||||++.... ......+.+|+++|++++|||||++++++.+.        
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~--------   79 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESG--------   79 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECS--------
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--------
Confidence            35689999999999999999995 579999999997543 22345678999999999999999999999763        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec---CCCcEEEec
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD---EHRIAKLSD  593 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl~D  593 (747)
                      +..++|||||++|+|.+++..   ...+++..+..++.||+.||+|||+   .+|+||||||+|||+.   .++.+||+|
T Consensus        80 ~~~~lvmE~~~gg~L~~~l~~---~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~D  153 (307)
T d1a06a_          80 GHLYLIMQLVSGGELFDRIVE---KGFYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISD  153 (307)
T ss_dssp             SEEEEEECCCCSCBHHHHHHT---CSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECC
T ss_pred             CEEEEEEeccCCCcHHHhhhc---ccCCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecccceeecccCCCceEEEec
Confidence            479999999999999999975   3469999999999999999999999   8999999999999994   578999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM  673 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~  673 (747)
                      ||+|+........             ...+|++.|+|||++....|+.++|||||||++|||+||+.||...........
T Consensus       154 FG~a~~~~~~~~~-------------~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~  220 (307)
T d1a06a_         154 FGLSKMEDPGSVL-------------STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQ  220 (307)
T ss_dssp             C-------------------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred             cceeEEccCCCee-------------eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHH
Confidence            9999765432211             113578899999999999999999999999999999999999976544333222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......     ..++.....++    ..+.+++.+||+.||++|||+.|++++
T Consensus       221 i~~~~~-----~~~~~~~~~~s----~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         221 ILKAEY-----EFDSPYWDDIS----DSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             HHTTCC-----CCCTTTTTTSC----HHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HhccCC-----CCCCccccCCC----HHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            211111     01111222333    348899999999999999999999863

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-48  Score=404.70  Aligned_cols=258  Identities=21%  Similarity=0.308  Sum_probs=203.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCc----EEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGT----YVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~  513 (747)
                      .+|+++++||+|+||+||+|++ .+|+    .||||+++.. .....+.|.+|+++|++++|||||+++|+|.+.     
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-----   83 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-----   83 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-----
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----
Confidence            4699999999999999999985 4454    5889988643 344567899999999999999999999999763     


Q ss_pred             CCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEec
Q 044236          514 SNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSD  593 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  593 (747)
                          ..+++|||+.+|+|.+++...  ...++|..++.++.|||+||+|||+   .+||||||||+|||++.++.+||+|
T Consensus        84 ----~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~D  154 (317)
T d1xkka_          84 ----TVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITD  154 (317)
T ss_dssp             ----SEEEEEECCTTCBHHHHHHHT--SSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECC
T ss_pred             ----CeeEEEEeccCCccccccccc--ccCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeec
Confidence                468999999999999988764  4569999999999999999999999   7899999999999999999999999


Q ss_pred             ccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhhHHH
Q 044236          594 YGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNE  672 (747)
Q Consensus       594 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~~~~  672 (747)
                      ||+|+...........          ....++..|+|||.+....|+.++|||||||++|||+| |+.||.......+..
T Consensus       155 FGla~~~~~~~~~~~~----------~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~  224 (317)
T d1xkka_         155 FGLAKLLGAEEKEYHA----------EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS  224 (317)
T ss_dssp             CSHHHHTTTTCC------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHH
T ss_pred             cccceecccccccccc----------cccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHH
Confidence            9999876433221110          11235678999999999999999999999999999999 688887655444433


Q ss_pred             HHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       673 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .......        +..+..++    ..+.+++.+||+.||.+||||.||+++|+.+.+.
T Consensus       225 ~i~~~~~--------~~~p~~~~----~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         225 ILEKGER--------LPQPPICT----IDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             HHHHTCC--------CCCCTTBC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHHcCCC--------CCCCcccC----HHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHhC
Confidence            3322111        11112333    3488999999999999999999999999887653

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.5e-48  Score=401.72  Aligned_cols=244  Identities=24%  Similarity=0.316  Sum_probs=196.6

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      +.|+.++.||+|+||+||+|+ ..+|+.||||+++...   ....+.+.+|+++|++++|||||+++++|.+.       
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~-------   87 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-------   87 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-------
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEEC-------
Confidence            348889999999999999998 4679999999997543   23446789999999999999999999999873       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       +..++|||||++|+|..++..   ...+++..+..++.||+.||.|||+   .+||||||||+|||++.++.+||+|||
T Consensus        88 -~~~~iv~E~~~~g~l~~~~~~---~~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~~Kl~DFG  160 (309)
T d1u5ra_          88 -HTAWLVMEYCLGSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFG  160 (309)
T ss_dssp             -TEEEEEEECCSEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCT
T ss_pred             -CEEEEEEEecCCCchHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEECCCCCEEEeecc
Confidence             479999999999999876654   3469999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec---cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI---QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLN  671 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~  671 (747)
                      +|+......                ...|++.|+|||++..   ..|+.++|||||||++|||++|+.||...... .+.
T Consensus       161 ~a~~~~~~~----------------~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~  224 (309)
T d1u5ra_         161 SASIMAPAN----------------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALY  224 (309)
T ss_dssp             TCBSSSSBC----------------CCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH
T ss_pred             cccccCCCC----------------ccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            997543211                1346778999998853   45899999999999999999999998654332 222


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .+..... .   . +   ....+++    .+.+++.+||+.||.+|||+.|+++
T Consensus       225 ~i~~~~~-~---~-~---~~~~~s~----~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         225 HIAQNES-P---A-L---QSGHWSE----YFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             HHHHSCC-C---C-C---SCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHhCCC-C---C-C---CCCCCCH----HHHHHHHHHCcCChhHCcCHHHHHh
Confidence            2222110 0   0 0   1122333    4889999999999999999999975

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=8.5e-48  Score=407.71  Aligned_cols=252  Identities=17%  Similarity=0.267  Sum_probs=205.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++........+.+.+|+++|++++|||||++++++.+.        +
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~--------~   96 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDD--------N   96 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEET--------T
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--------C
Confidence            46899999999999999999995 57999999999866666667899999999999999999999999873        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec--CCCcEEEeccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD--EHRIAKLSDYG  595 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld--~~~~~kl~DFG  595 (747)
                      ..++|||||++|+|.+++...  ...+++..+..|+.||+.||.|||+   .+||||||||+|||++  .++.+||+|||
T Consensus        97 ~~~ivmE~~~gg~L~~~l~~~--~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHrDiKp~NIll~~~~~~~vkL~DFG  171 (350)
T d1koaa2          97 EMVMIYEFMSGGELFEKVADE--HNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFG  171 (350)
T ss_dssp             EEEEEECCCCSCBHHHHHTCT--TSCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTSCCEEECCCT
T ss_pred             EEEEEEEcCCCCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHh---cCCeeeeechhHeeeccCCCCeEEEeecc
Confidence            899999999999999998653  3469999999999999999999999   8999999999999995  46889999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      +|+.+......             ....+++.|+|||++.+..|+.++|||||||++|||+||+.||...... .+..+.
T Consensus       172 ~a~~~~~~~~~-------------~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~  238 (350)
T d1koaa2         172 LTAHLDPKQSV-------------KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVK  238 (350)
T ss_dssp             TCEECCTTSCE-------------EEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             hheeccccccc-------------ceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            99765432211             1245678999999999999999999999999999999999999754433 333332


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....      .++.....++    ..+.+++.+||+.||++|||+.|++++
T Consensus       239 ~~~~~------~~~~~~~~~s----~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         239 SCDWN------MDDSAFSGIS----EDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             HTCCC------SCCGGGGGCC----HHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             hCCCC------CCcccccCCC----HHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            21110      1111112223    348899999999999999999999863

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.2e-47  Score=406.77  Aligned_cols=251  Identities=15%  Similarity=0.252  Sum_probs=204.9

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.        .
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~--------~   99 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDK--------Y   99 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECS--------S
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--------C
Confidence            35799999999999999999994 67999999999866555667889999999999999999999999863        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec--CCCcEEEeccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD--EHRIAKLSDYG  595 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld--~~~~~kl~DFG  595 (747)
                      .+++|||||++|+|.+++...  ...+++.++..|+.||+.||+|||+   .+||||||||+|||++  .++.+||+|||
T Consensus       100 ~~~ivmE~~~gg~L~~~~~~~--~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFG  174 (352)
T d1koba_         100 EMVLILEFLSGGELFDRIAAE--DYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFG  174 (352)
T ss_dssp             EEEEEEECCCCCBHHHHTTCT--TCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCT
T ss_pred             EEEEEEEcCCCChHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccccccccccccCCCeEEEeecc
Confidence            899999999999999887653  4469999999999999999999999   8999999999999998  67899999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      +|+........             ....+++.|+|||++....|+.++||||+||++|||+||+.||...... .+..+.
T Consensus       175 la~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~  241 (352)
T d1koba_         175 LATKLNPDEIV-------------KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVK  241 (352)
T ss_dssp             TCEECCTTSCE-------------EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHH
T ss_pred             cceecCCCCce-------------eeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            99876533211             1235667899999999999999999999999999999999999765433 233332


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .... .     ..+.....++    ..+.+|+.+||+.||.+|||+.|+++
T Consensus       242 ~~~~-~-----~~~~~~~~~s----~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         242 RCDW-E-----FDEDAFSSVS----PEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             HCCC-C-----CCSSTTTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             hCCC-C-----CCcccccCCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            2111 0     1111112233    34889999999999999999999986

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-48  Score=395.17  Aligned_cols=256  Identities=20%  Similarity=0.269  Sum_probs=194.9

Q ss_pred             hCCCccccccCCCCeeEEEEEeC--CC--cEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE--NG--TYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~--~g--~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ++|++.+.||+|+||+||+|++.  ++  ..||||+++..   +....++|.+|+++|++++|||||+++|+|.+.    
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~----   83 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP----   83 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS----
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec----
Confidence            56889999999999999999852  23  47899998643   234457899999999999999999999999652    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEe
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLS  592 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  592 (747)
                           ..++|||||++|++.+++..+  ...++|..++.++.|+|+||.|||+   .+|+||||||+|||++.++.+||+
T Consensus        84 -----~~~lv~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~  153 (273)
T d1u46a_          84 -----PMKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG  153 (273)
T ss_dssp             -----SCEEEEECCTTCBHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEEC
T ss_pred             -----chheeeeeecCcchhhhhhcc--cCCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeec
Confidence                 468999999999999887654  3469999999999999999999999   889999999999999999999999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh-CCCCCCCChhhh-H
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFL-L  670 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt-g~~p~~~~~~~~-~  670 (747)
                      |||+++...........         .....++..|+|||.+....++.++|||||||++|||+| |+.||....... .
T Consensus       154 DfGl~~~~~~~~~~~~~---------~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~  224 (273)
T d1u46a_         154 DFGLMRALPQNDDHYVM---------QEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQIL  224 (273)
T ss_dssp             CCTTCEECCC-CCEEEC--------------CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHH
T ss_pred             cchhhhhcccCCCccee---------cCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHH
Confidence            99999876443221111         111234457889999999999999999999999999998 899987544333 3


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      .++.....        .+.....++.    .+.+|+.+||+.||++||||.||.+.|+++
T Consensus       225 ~~i~~~~~--------~~~~~~~~~~----~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         225 HKIDKEGE--------RLPRPEDCPQ----DIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             HHHHTSCC--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHhCCC--------CCCCcccccH----HHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            33322111        1112223343    488999999999999999999999988764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-47  Score=393.90  Aligned_cols=249  Identities=19%  Similarity=0.277  Sum_probs=201.1

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc------hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK------KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++...      ....+.+.+|+++|++++|||||+++++|.+.    
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~----   85 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK----   85 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS----
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC----
Confidence            5689999999999999999995 679999999997432      22467899999999999999999999999873    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC----c
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR----I  588 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----~  588 (747)
                          ...++|||||++|+|.+++...   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++    .
T Consensus        86 ----~~~~iv~E~~~gg~L~~~i~~~---~~l~~~~~~~~~~qi~~al~yLH~---~~ivHrDiKp~Nill~~~~~~~~~  155 (293)
T d1jksa_          86 ----TDVILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPR  155 (293)
T ss_dssp             ----SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSSSSCC
T ss_pred             ----CEEEEEEEcCCCccccchhccc---cccchhHHHHHHHHHHHHHHhhhh---cceeecccccceEEEecCCCcccc
Confidence                4899999999999999999763   469999999999999999999999   8999999999999998776    5


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      +|++|||+|+.........             ...+++.|+|||++....++.++|||||||++|||+||+.||......
T Consensus       156 vkl~DfG~a~~~~~~~~~~-------------~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~  222 (293)
T d1jksa_         156 IKIIDFGLAHKIDFGNEFK-------------NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ  222 (293)
T ss_dssp             EEECCCTTCEECTTSCBCS-------------CCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             eEecchhhhhhcCCCcccc-------------ccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHH
Confidence            9999999997664332211             124566899999999889999999999999999999999998754433


Q ss_pred             h-HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          669 L-LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       669 ~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      . ...+.... ..     ..+.....++    ..+.+++.+||+.||++|||+.|+++
T Consensus       223 ~~~~~i~~~~-~~-----~~~~~~~~~s----~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         223 ETLANVSAVN-YE-----FEDEYFSNTS----ALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             HHHHHHHTTC-CC-----CCHHHHTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHhcC-CC-----CCchhcCCCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            2 22222211 00     0111112233    34789999999999999999999986

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-47  Score=396.51  Aligned_cols=260  Identities=24%  Similarity=0.362  Sum_probs=203.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeC-CCc--EEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE-NGT--YVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|++.++||+|+||+||+|++. +|.  .||||+++.. .....+.|.+|+++|+++ +|||||+++|+|.+.      
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~------   83 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR------   83 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET------
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecC------
Confidence            67888999999999999999854 454  5788887643 334556899999999999 799999999999874      


Q ss_pred             CCceEEEEEeccCCCCcccccccC-------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSEN-------------CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNI  581 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~-------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NI  581 (747)
                        +..++||||+++|+|.++++..             .....++|..+..++.|||+||.|||+   .+|+||||||+||
T Consensus        84 --~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~---~~iiHrDlkp~NI  158 (309)
T d1fvra_          84 --GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNI  158 (309)
T ss_dssp             --TEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGE
T ss_pred             --CeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc---CCccccccccceE
Confidence              4799999999999999999753             123569999999999999999999999   8999999999999


Q ss_pred             eecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CC
Q 044236          582 LLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PI  660 (747)
Q Consensus       582 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~  660 (747)
                      |++.++.+||+|||+|+.........             ...++..|++||.+....++.++|||||||++|||++| .+
T Consensus       159 L~~~~~~~kl~DfG~a~~~~~~~~~~-------------~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~  225 (309)
T d1fvra_         159 LVGENYVAKIADFGLSRGQEVYVKKT-------------MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGT  225 (309)
T ss_dssp             EECGGGCEEECCTTCEESSCEECCC-----------------CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred             EEcCCCceEEcccccccccccccccc-------------ceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCC
Confidence            99999999999999997654322111             12356678999999999999999999999999999997 45


Q ss_pred             CCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 044236          661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQA  735 (747)
Q Consensus       661 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  735 (747)
                      |+.......+.......        ..+..+..+++    ++.+|+.+||+.||++||||.||++.|+.+.+...
T Consensus       226 p~~~~~~~~~~~~i~~~--------~~~~~~~~~~~----~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~  288 (309)
T d1fvra_         226 PYCGMTCAELYEKLPQG--------YRLEKPLNCDD----EVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  288 (309)
T ss_dssp             TTTTCCHHHHHHHGGGT--------CCCCCCTTBCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCHHHHHHHHHhc--------CCCCCCccCCH----HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCc
Confidence            67554433322221111        11222233343    48899999999999999999999999998876443

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-46  Score=395.04  Aligned_cols=248  Identities=21%  Similarity=0.261  Sum_probs=204.5

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++++.||+|+||+||+|+. .+|+.||||+++..   .....+.+.+|+.+|++++|||||++++++.+.      
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~------   77 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH------   77 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS------
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccc------
Confidence            46899999999999999999994 67999999999743   234567789999999999999999999999873      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +.+++|||||++|+|.+++...   ..+++..+..++.||+.||+|||+   .+||||||||+|||++.++.+||+||
T Consensus        78 --~~~~iv~ey~~gg~L~~~~~~~---~~~~e~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NILl~~~g~vkl~DF  149 (337)
T d1o6la_          78 --DRLCFVMEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDF  149 (337)
T ss_dssp             --SEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             --cccccceeccCCCchhhhhhcc---cCCcHHHHHHHHHHHhhhhhhhhh---cCccccccCHHHeEecCCCCEEEeec
Confidence              4899999999999999998863   458899999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+|+........            ....+|++.|+|||++.+..|+.++||||+||++|||++|+.||...+...+....
T Consensus       150 G~a~~~~~~~~~------------~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i  217 (337)
T d1o6la_         150 GLCKEGISDGAT------------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI  217 (337)
T ss_dssp             TTCBCSCCTTCC------------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             ccccccccCCcc------------cccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHH
Confidence            999765332111            11247889999999999999999999999999999999999998765544333222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLW  725 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~  725 (747)
                      ....         +.++..+++    ++.+++.+||+.||.+||+     +.|+++
T Consensus       218 ~~~~---------~~~p~~~s~----~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         218 LMEE---------IRFPRTLSP----EAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             HHCC---------CCCCTTSCH----HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             hcCC---------CCCCccCCH----HHHHHHHhhccCCchhhcccccccHHHHHc
Confidence            2111         112223344    4789999999999999995     788875

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-46  Score=392.59  Aligned_cols=255  Identities=22%  Similarity=0.314  Sum_probs=199.0

Q ss_pred             cccccCCCCeeEEEEEeCC----CcEEEEEEeec-cchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          445 LSFMGEGSRGKLYKGRLEN----GTYVAIRSLTF-LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~-~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .++||+|+||+||+|++.+    ...||||+++. ......++|.+|+++|++++|||||+++|+|...+       ...
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~-------~~~  104 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE-------GSP  104 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETT-------TEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecC-------Cce
Confidence            3679999999999998643    23689999974 34555678999999999999999999999987632       378


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII  599 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  599 (747)
                      ++|||||++|+|.++++..  ...+++..++.++.|+|+||.|||+   .+|+||||||+|||+|+++.+||+|||+++.
T Consensus       105 ~lv~E~~~~g~l~~~~~~~--~~~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~  179 (311)
T d1r0pa_         105 LVVLPYMKHGDLRNFIRNE--THNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARD  179 (311)
T ss_dssp             EEEEECCTTCBHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCC
T ss_pred             EEEEEEeecCchhhhhccc--cccchHHHHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhh
Confidence            9999999999999998754  4467899999999999999999999   8999999999999999999999999999987


Q ss_pred             ccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-h-hhHHHHHhcc
Q 044236          600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-A-FLLNEMASFG  677 (747)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~-~~~~~~~~~~  677 (747)
                      +..........        .....++..|++||.+....++.++|||||||++|||+||..|+.... . +....+.. +
T Consensus       180 ~~~~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~-g  250 (311)
T d1r0pa_         180 MYDKEFDSVHN--------KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ-G  250 (311)
T ss_dssp             TTTTTCCCTTC--------TTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHT-T
T ss_pred             cccccccccee--------cccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHc-C
Confidence            65432211110        011235667899999999999999999999999999999866665322 1 11222211 1


Q ss_pred             CcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       678 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      .     +   +..+..+++    .+.+++.+||+.||++||||.||+++|+.+.+
T Consensus       251 ~-----~---~~~p~~~~~----~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~  293 (311)
T d1r0pa_         251 R-----R---LLQPEYCPD----PLYEVMLKCWHPKAEMRPSFSELVSRISAIFS  293 (311)
T ss_dssp             C-----C---CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             C-----C---CCCcccCcH----HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            1     1   111122333    48899999999999999999999999998865

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-47  Score=396.79  Aligned_cols=273  Identities=16%  Similarity=0.234  Sum_probs=200.4

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      .+|...+.||+|+||.||+|++ +|+.||||+++.... ....+..|+..+.+++|||||+++|+|.+.+    .....+
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~-~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~----~~~~~~   76 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDN----GTWTQL   76 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC----SSSEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hHHHHHHHHHHHhhCCCCcCcceEEEEEeCC----CcceEE
Confidence            3566778899999999999997 588999999874332 1122334555566789999999999998743    123478


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCcccCCCCCCceeecCCCcEEEecc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV-----ISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      ++|||||++|+|.+++++.    .++|..++.++.|+|.||+|+|+..     .++||||||||+|||++.++.+||+||
T Consensus        77 ~lv~Ey~~~g~L~~~l~~~----~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DF  152 (303)
T d1vjya_          77 WLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred             EEEEecccCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEec
Confidence            9999999999999999753    5999999999999999999999731     268999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc------CCCcCCceeehhHHHHHHhhCCCCCCCChhh
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ------RTKLEDDVYNFGFILLESLVGPIVTGKGEAF  668 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~  668 (747)
                      |+++...........        ......+++.|+|||++...      .++.|+|||||||++|||+||..|++.....
T Consensus       153 Gl~~~~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~  224 (303)
T d1vjya_         153 GLAVRHDSATDTIDI--------APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY  224 (303)
T ss_dssp             TTCEEEETTTTEECC------------CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCC
T ss_pred             CccccccCCCcceec--------cccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCccccc
Confidence            999876543221110        01113567789999987653      2577899999999999999998776532211


Q ss_pred             ------------hHHHHHhccCcCCccccccccccCCC-CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          669 ------------LLNEMASFGSQDGRRRIVDPVVLTTC-SQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       669 ------------~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                                  ....+......    ...+|.+...+ +.+....+.+++.+||+.||++||||.||+++|+++.+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~  299 (303)
T d1vjya_         225 QLPYYDLVPSDPSVEEMRKVVCE----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  299 (303)
T ss_dssp             CCTTTTTSCSSCCHHHHHHHHTT----SCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ccchhhcccccchHHHHHHHHhc----cccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHhc
Confidence                        01111111111    11122222211 2345567899999999999999999999999999887644

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-47  Score=394.05  Aligned_cols=262  Identities=20%  Similarity=0.242  Sum_probs=196.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeecc-chhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||+||+|+..      +++.||||+++.. .....+.+.+|..++.++ +|+|||.+++++...+ 
T Consensus        12 ~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~-   90 (299)
T d1ywna1          12 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG-   90 (299)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT-
T ss_pred             HHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCC-
Confidence            367899999999999999999842      3578999999743 334456788888888777 6899999999887632 


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCC
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLT  577 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk  577 (747)
                            ...++|||||++|+|.++++...             ....++|..++.++.||++||+|||+   .+|||||||
T Consensus        91 ------~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~ivHrDlK  161 (299)
T d1ywna1          91 ------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLA  161 (299)
T ss_dssp             ------SCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCC
T ss_pred             ------CeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh---CCCcCCcCC
Confidence                  46899999999999999986431             12358999999999999999999999   889999999


Q ss_pred             CCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhh
Q 044236          578 TNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV  657 (747)
Q Consensus       578 ~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Ellt  657 (747)
                      |+|||++.++.+||+|||+|+...........          ....++..|+|||++....++.++|||||||++|||+|
T Consensus       162 p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~----------~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt  231 (299)
T d1ywna1         162 ARNILLSEKNVVKICDFGLARDIYKDPDYVRK----------GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS  231 (299)
T ss_dssp             GGGEEECGGGCEEECC------CCSCTTSCCT----------TSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             ccceeECCCCcEEEccCcchhhcccccccccc----------CceeeCccccchhHhhcCCCCcccceeehHHHHHHHHh
Confidence            99999999999999999999865433221110          11346778999999999999999999999999999999


Q ss_pred             C-CCCCCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          658 G-PIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       658 g-~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      | ..|+..... ..+........        .+..+..+++    .+.+++.+||+.||++||||.||+++|+.+.+
T Consensus       232 ~~~~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         232 LGASPYPGVKIDEEFCRRLKEGT--------RMRAPDYTTP----EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             TSCCSSTTCCCSHHHHHHHHHTC--------CCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHhcCC--------CCCCCccCCH----HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            7 566754332 22222222111        1112223333    48899999999999999999999999998754

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-46  Score=389.62  Aligned_cols=261  Identities=20%  Similarity=0.305  Sum_probs=203.1

Q ss_pred             hhCCCccccccCCCCeeEEEEEeC--------CCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeecc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRLE--------NGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIES  508 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~  508 (747)
                      .++|.+.+.||+|+||.||+|+..        ++..||||+++... .....++.+|...+.++ +|||||+++|+|.+.
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence            357888899999999999999842        13579999997533 34457888999999888 899999999999873


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENC-------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                              ...++|||||++|+|.+++....             ....+++.+++.++.|++.||+|||+   .+|||||
T Consensus        92 --------~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---~~ivHrD  160 (299)
T d1fgka_          92 --------GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRD  160 (299)
T ss_dssp             --------SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             --------CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---CCEEeee
Confidence                    37899999999999999997542             12458999999999999999999999   8899999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      |||+|||++.++.+||+|||+++...........          ....++..|+|||.+....|+.|+|||||||++|||
T Consensus       161 iKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~----------~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~el  230 (299)
T d1fgka_         161 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT----------TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI  230 (299)
T ss_dssp             CSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCC----------TTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ecccceeecCCCCeEeccchhhcccccccccccc----------ccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHh
Confidence            9999999999999999999999876543322110          112456678999999999999999999999999999


Q ss_pred             hh-CCCCCCCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          656 LV-GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       656 lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      +| |.+|+.......+.+......        .+..+..+++    .+.+|+.+||+.||.+||||.||+++|+.+..
T Consensus       231 l~~g~~p~~~~~~~~~~~~i~~~~--------~~~~p~~~~~----~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         231 FTLGGSPYPGVPVEELFKLLKEGH--------RMDKPSNCTN----ELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             HTTSCCSSTTCCHHHHHHHHHTTC--------CCCCCSSCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCCHHHHHHHHHcCC--------CCCCCccchH----HHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence            98 688887665544433322111        1112223344    48899999999999999999999999988754

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-46  Score=392.33  Aligned_cols=244  Identities=22%  Similarity=0.305  Sum_probs=202.0

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++..   +....+.+.+|+.+|++++|||||++++++.+.      
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~------   76 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA------   76 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS------
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeC------
Confidence            36799999999999999999995 67999999999743   234567889999999999999999999999873      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        ...++|||||++|+|..++..   ...+++..+..++.||+.||+|||+   .+||||||||+|||++.++.+||+||
T Consensus        77 --~~~~ivmE~~~gg~l~~~~~~---~~~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NILl~~~g~vkL~DF  148 (316)
T d1fota_          77 --QQIFMIMDYIEGGELFSLLRK---SQRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDF  148 (316)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHH---TSSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             --CeeeeEeeecCCccccccccc---cccccccHHHHHHHHHHHhhhhhcc---CcEEccccCchheeEcCCCCEEEecC
Confidence              489999999999999998876   3458888999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH-HHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL-NEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~-~~~  673 (747)
                      |+|+.......               ..+|++.|+|||++.+..|+.++||||+||++|||+||+.||........ ..+
T Consensus       149 G~a~~~~~~~~---------------~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i  213 (316)
T d1fota_         149 GFAKYVPDVTY---------------TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKI  213 (316)
T ss_dssp             SSCEECSSCBC---------------CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH
T ss_pred             ccceEeccccc---------------cccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHH
Confidence            99977543211               14678899999999988999999999999999999999999976544332 222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      .. ..         ...+...++    .+.+++.+||+.||.+||     |++|+++
T Consensus       214 ~~-~~---------~~~p~~~s~----~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         214 LN-AE---------LRFPPFFNE----DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             HH-CC---------CCCCTTSCH----HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             Hc-CC---------CCCCCCCCH----HHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            21 10         111122333    488999999999999996     8999975

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3e-46  Score=383.10  Aligned_cols=251  Identities=20%  Similarity=0.295  Sum_probs=198.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch---------hcHHHHHHHHHHHhcCC-CCCcceeeeeeecc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK---------YSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIES  508 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---------~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~  508 (747)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++....         ...+.+.+|+.+|++++ |||||++++++.+.
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            6789999999999999999994 6799999999975321         12346889999999997 99999999999873


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCc
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI  588 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  588 (747)
                              +..|||||||++|+|.++++.+   ..+++..+..++.||++||+|||+   .+|+||||||+|||++.++.
T Consensus        83 --------~~~~ivmE~~~~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~  148 (277)
T d1phka_          83 --------TFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMN  148 (277)
T ss_dssp             --------SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCC
T ss_pred             --------cceEEEEEcCCCchHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccceEEEcCCCC
Confidence                    4899999999999999999763   469999999999999999999999   89999999999999999999


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec------cCCCcCCceeehhHHHHHHhhCCCCC
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI------QRTKLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------~~~s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                      +||+|||+++.........             ...++..|++||.+..      ..++.++||||+||++|||+||+.||
T Consensus       149 ~kl~DFG~a~~~~~~~~~~-------------~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf  215 (277)
T d1phka_         149 IKLTDFGFSCQLDPGEKLR-------------EVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPF  215 (277)
T ss_dssp             EEECCCTTCEECCTTCCBC-------------CCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             eEEccchheeEccCCCcee-------------eeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCC
Confidence            9999999998764322111             1235567777877643      34688999999999999999999999


Q ss_pred             CCChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........+........    . .......++    .++.+++.+||+.||++|||+.||+++
T Consensus       216 ~~~~~~~~~~~i~~~~~~----~-~~~~~~~~s----~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         216 WHRKQMLMLRMIMSGNYQ----F-GSPEWDDYS----DTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             CCSSHHHHHHHHHHTCCC----C-CTTTGGGSC----HHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             CCCCHHHHHHHHHhCCCC----C-CCcccccCC----HHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            866544332222211111    0 111112233    448899999999999999999998753

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.3e-46  Score=384.55  Aligned_cols=263  Identities=15%  Similarity=0.182  Sum_probs=202.6

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc---hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      .++|++.+.||+|+||+||+|+ ..+|+.||||+++...   ....+.+.+|+++|++++|||||++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~----~   81 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET----P   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEC----S
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeecc----C
Confidence            3579999999999999999999 4679999999997432   334567899999999999999999999987643    1


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                      .....|+|||||++|+|.+++...   ..+++.++..++.||+.||+|||+   .+||||||||+|||++.++..+|+||
T Consensus        82 ~~~~~~lvmE~~~g~~L~~~~~~~---~~l~~~~~~~i~~qi~~al~~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~  155 (277)
T d1o6ya_          82 AGPLPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDF  155 (277)
T ss_dssp             SSEEEEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTSCEEECCC
T ss_pred             CCceEEEEEECCCCCEehhhhccc---CCCCHHHHHHHHHHHHHHHHHHHh---CCccCccccCcccccCccccceeehh
Confidence            134689999999999999988763   469999999999999999999999   89999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEM  673 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~  673 (747)
                      |.++..........         .....++++.|+|||++....++.++|||||||++|||+||+.||....... ....
T Consensus       156 ~~~~~~~~~~~~~~---------~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~  226 (277)
T d1o6ya_         156 GIARAIADSGNSVT---------QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQH  226 (277)
T ss_dssp             TTCEECC-------------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             hhhhhhcccccccc---------ccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence            99865533221110         1112467889999999988899999999999999999999999997554332 2222


Q ss_pred             HhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-CHHHHHHHHHHH
Q 044236          674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-SFEDVLWNLQYA  730 (747)
Q Consensus       674 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~evl~~L~~~  730 (747)
                      .....   .   ........+++    .+.+++.+||+.||.+|| |++++.+.|..+
T Consensus       227 ~~~~~---~---~~~~~~~~~s~----~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~  274 (277)
T d1o6ya_         227 VREDP---I---PPSARHEGLSA----DLDAVVLKALAKNPENRYQTAAEMRADLVRV  274 (277)
T ss_dssp             HHCCC---C---CGGGTSSSCCH----HHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             HhcCC---C---CCchhccCCCH----HHHHHHHHHccCCHhHCHhHHHHHHHHHHHH
Confidence            21110   0   01111123333    488999999999999999 899999988765

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-46  Score=391.00  Aligned_cols=261  Identities=23%  Similarity=0.282  Sum_probs=205.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe------CCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcC-CCCCcceeeeeeeccCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL------ENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKL-QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l-~H~nIv~l~g~~~~~~~  510 (747)
                      .++|++.+.||+|+||.||+|++      .+++.||||+++... ......+.+|+.+++++ +|||||+++|+|.+.  
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~--   99 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG--   99 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeC--
Confidence            36788889999999999999984      346799999997533 34556789999999999 699999999999763  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCC---------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENC---------------PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR  575 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  575 (747)
                            +..++|||||++|+|.++++...               ....+++..++.++.||++||+|||+   .+|||||
T Consensus       100 ------~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~---~~ivHrD  170 (311)
T d1t46a_         100 ------GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRD  170 (311)
T ss_dssp             ------SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             ------CEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeecc
Confidence                  36899999999999999987532               12358999999999999999999999   8899999


Q ss_pred             CCCCceeecCCCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHH
Q 044236          576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES  655 (747)
Q Consensus       576 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~El  655 (747)
                      |||+|||++.++.+|++|||+++...........          ...++++.|+|||.+....++.++|||||||++|||
T Consensus       171 LKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~----------~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~el  240 (311)
T d1t46a_         171 LAARNILLTHGRITKICDFGLARDIKNDSNYVVK----------GNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL  240 (311)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCTTSCTTSEEC----------SSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCcccccccchheeccCCCcceEe----------eecccChHHcCHHHhcCCCCCCcccccchHHHHHHH
Confidence            9999999999999999999999876543322111          113567789999999999999999999999999999


Q ss_pred             hh-CCCCCCCChh-hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHH
Q 044236          656 LV-GPIVTGKGEA-FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQ  732 (747)
Q Consensus       656 lt-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  732 (747)
                      +| |.+|+..... ..+..+.....        .+.....++    ..+.+|+.+||+.||++||||.||+++|+....
T Consensus       241 lt~g~p~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~----~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~  307 (311)
T d1t46a_         241 FSLGSSPYPGMPVDSKFYKMIKEGF--------RMLSPEHAP----AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQIS  307 (311)
T ss_dssp             HTTTCCSSTTCCSSHHHHHHHHHTC--------CCCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HhCCCCCCCCCCHHHHHHHHHhcCC--------CCCCccccc----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhc
Confidence            99 5666644322 22333322211        111112233    348899999999999999999999999986644

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-46  Score=387.31  Aligned_cols=258  Identities=17%  Similarity=0.199  Sum_probs=204.4

Q ss_pred             hCCCccccccCCCCeeEEEEEeC------CCcEEEEEEeecc-chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLE------NGTYVAIRSLTFL-KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQD  512 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~  512 (747)
                      ++|++.+.||+|+||+||+|++.      +++.||||+++.. .......|.+|++++++++|||||+++|+|...    
T Consensus        20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~----   95 (308)
T d1p4oa_          20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG----   95 (308)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS----
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecC----
Confidence            67888899999999999999853      3678999999743 334456789999999999999999999999763    


Q ss_pred             CCCCceEEEEEeccCCCCcccccccC-------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC
Q 044236          513 DSNTNKVFLVYEYIPNGSYRAHLSEN-------CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE  585 (747)
Q Consensus       513 ~~~~~~~~lv~Ey~~~gsL~~~l~~~-------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  585 (747)
                          ...++|||||++|+|.+++...       .....++|..+.+++.|+|+||.|||+   .+|+||||||+|||+|.
T Consensus        96 ----~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHrDlk~~NiLld~  168 (308)
T d1p4oa_          96 ----QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAE  168 (308)
T ss_dssp             ----SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECT
T ss_pred             ----CceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeeceEcCCceeecC
Confidence                3689999999999999988642       123457999999999999999999999   78999999999999999


Q ss_pred             CCcEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhC-CCCCCC
Q 044236          586 HRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGK  664 (747)
Q Consensus       586 ~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg-~~p~~~  664 (747)
                      ++++||+|||+|+.+..........          ...++..|++||.+....++.++|||||||++|||+|| +.|+..
T Consensus       169 ~~~~Kl~DFGla~~~~~~~~~~~~~----------~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~  238 (308)
T d1p4oa_         169 DFTVKIGDFGMTRDIYETDYYRKGG----------KGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG  238 (308)
T ss_dssp             TCCEEECCTTCCCGGGGGGCEEGGG----------SSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTT
T ss_pred             CceEEEeecccceeccCCcceeecc----------ceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCC
Confidence            9999999999998765443221110          12356789999999999999999999999999999999 567765


Q ss_pred             ChhhhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHH
Q 044236          665 GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYA  730 (747)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  730 (747)
                      ............   ...     +..+..++    ..+.+++.+||+.||++||||.||+++|+..
T Consensus       239 ~~~~~~~~~i~~---~~~-----~~~p~~~~----~~l~~li~~cl~~~P~~RPs~~~il~~L~~~  292 (308)
T d1p4oa_         239 LSNEQVLRFVME---GGL-----LDKPDNCP----DMLFELMRMCWQYNPKMRPSFLEIISSIKEE  292 (308)
T ss_dssp             SCHHHHHHHHHT---TCC-----CCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHh---CCC-----CCCcccch----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            443332222111   111     11122333    3489999999999999999999999999765

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-45  Score=387.76  Aligned_cols=251  Identities=12%  Similarity=0.151  Sum_probs=201.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .++|.+.+.||+|+||+||+|+. .+|+.||||+++... .....+.+|+++|++++|||||++++++.+.        +
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~--------~   74 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESM--------E   74 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEET--------T
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC--------C
Confidence            46789999999999999999985 579999999997543 3345688999999999999999999999873        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC--CCcEEEeccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE--HRIAKLSDYG  595 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--~~~~kl~DFG  595 (747)
                      .+|+|||||++|+|.+++...  ...+++.++..++.||+.||+|||+   .+|+||||||+|||++.  ...+||+|||
T Consensus        75 ~~~lvmE~~~gg~L~~~i~~~--~~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DFG  149 (321)
T d1tkia_          75 ELVMIFEFISGLDIFERINTS--AFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFG  149 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSS--SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred             EEEEEEecCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccceeecCCCceEEEEcccc
Confidence            899999999999999999764  3469999999999999999999999   89999999999999984  4589999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEMA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~~  674 (747)
                      +++........             ....+++.|++||......|+.++||||+||++|||++|+.||....... ...+.
T Consensus       150 ~~~~~~~~~~~-------------~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~  216 (321)
T d1tkia_         150 QARQLKPGDNF-------------RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIM  216 (321)
T ss_dssp             TCEECCTTCEE-------------EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH
T ss_pred             hhhccccCCcc-------------cccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            99765432211             12355678889999888889999999999999999999999997654332 22222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ... .     .++......+++    ++.+++.+||+.||.+|||+.|++++
T Consensus       217 ~~~-~-----~~~~~~~~~~s~----~~~~li~~~L~~dp~~R~s~~eil~h  258 (321)
T d1tkia_         217 NAE-Y-----TFDEEAFKEISI----EAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             HTC-C-----CCCHHHHTTSCH----HHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             hCC-C-----CCChhhccCCCH----HHHHHHHHHccCChhHCcCHHHHhcC
Confidence            211 0     011111122333    47899999999999999999999863

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-45  Score=392.32  Aligned_cols=249  Identities=18%  Similarity=0.215  Sum_probs=196.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc---hhcHHHHH---HHHHHHhcCCCCCcceeeeeeeccCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK---KYSIQNLK---VRLDFLSKLQHPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~---~E~~~l~~l~H~nIv~l~g~~~~~~~~  511 (747)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++....   ......+.   +|+++++.++|||||++++++...   
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~---   79 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP---   79 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS---
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEEC---
Confidence            36899999999999999999995 579999999986422   12223333   457778888999999999999773   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEE
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL  591 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  591 (747)
                           +..++|||||++|+|.+++...   ..+++..+..++.||+.||+|||+   .+||||||||+|||++.++.+||
T Consensus        80 -----~~~~ivmE~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~NILl~~~g~iKl  148 (364)
T d1omwa3          80 -----DKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRI  148 (364)
T ss_dssp             -----SEEEEEECCCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSSSCEEE
T ss_pred             -----CEEEEEEEecCCCcHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHH---CCccceeeccceeEEcCCCcEEE
Confidence                 4799999999999999999763   458899999999999999999999   89999999999999999999999


Q ss_pred             ecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhhhH
Q 044236          592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL  670 (747)
Q Consensus       592 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~  670 (747)
                      +|||+|+........              ..+|++.|+|||++.. ..|+.++|||||||++|||+||+.||........
T Consensus       149 ~DFGla~~~~~~~~~--------------~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~  214 (364)
T d1omwa3         149 SDLGLACDFSKKKPH--------------ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK  214 (364)
T ss_dssp             CCCTTCEECSSSCCC--------------SCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCH
T ss_pred             eeeceeeecCCCccc--------------ccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            999999765432111              1356789999999864 5689999999999999999999999975443333


Q ss_pred             HHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCC-----HHHHHH
Q 044236          671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS-----FEDVLW  725 (747)
Q Consensus       671 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~  725 (747)
                      .++.......      .+..+..+++    .+.+++.+||+.||.+|||     ++|+++
T Consensus       215 ~~~~~~~~~~------~~~~~~~~s~----~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         215 HEIDRMTLTM------AVELPDSFSP----ELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             HHHHHHSSSC------CCCCCSSSCH----HHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             HHHHHhcccC------CCCCCCCCCH----HHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            3322221111      1112223344    4889999999999999999     688864

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-46  Score=391.35  Aligned_cols=256  Identities=16%  Similarity=0.224  Sum_probs=195.9

Q ss_pred             hhCCCccc-cccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhc-CCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLS-FMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK-LQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~-~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~-l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|.+.. +||+|+||+||+|+. .+|+.||||+++..     ..+.+|++++.+ .+|||||+++++|.+..    ..
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~----~~   80 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLY----AG   80 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEE----TT
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecc----cC
Confidence            46888875 599999999999984 67999999998732     456789998765 58999999999986521    11


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC---CCcEEEe
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE---HRIAKLS  592 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~  592 (747)
                      ...+|+|||||++|+|.+++... ....+++..+..|+.||+.||+|||+   .+|+||||||+|||++.   ++.+||+
T Consensus        81 ~~~~~ivmEy~~gg~L~~~i~~~-~~~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiKp~NIll~~~~~~~~~Kl~  156 (335)
T d2ozaa1          81 RKCLLIVMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLT  156 (335)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHSC-SCCCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSTTCCEEEC
T ss_pred             CCEEEEEEECCCCCcHHHHHHhc-CCCCcCHHHHHHHHHHHHHHHHHHHH---cCCcccccccccccccccccccccccc
Confidence            35789999999999999999754 23469999999999999999999999   89999999999999985   5679999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HH
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LN  671 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~  671 (747)
                      |||+|+........             ...++++.|+|||++....|+.++|||||||++|||+||+.||....... ..
T Consensus       157 DFG~a~~~~~~~~~-------------~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~  223 (335)
T d2ozaa1         157 DFGFAKETTSHNSL-------------TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP  223 (335)
T ss_dssp             CCTTCEECCCCCCC-------------CCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC----
T ss_pred             ccceeeeccCCCcc-------------ccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHH
Confidence            99999765433221             11356789999999999999999999999999999999999996433221 11


Q ss_pred             HHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       672 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .+....... ....     +.......+..+.+|+.+||+.||++|||+.|++++
T Consensus       224 ~~~~~i~~~-~~~~-----~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         224 GMKTRIRMG-QYEF-----PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             ----CCCSC-SSSC-----CTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHhcC-CCCC-----CCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            111111000 0011     111112334558999999999999999999999864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-45  Score=389.84  Aligned_cols=244  Identities=18%  Similarity=0.239  Sum_probs=201.8

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      ++|++++.||+|+||+||+|+. .+|+.||||++...   +....+.+.+|+++|+.++|||||++++++...       
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-------  113 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN-------  113 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-------
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccc-------
Confidence            6799999999999999999995 57999999999743   234457789999999999999999999999873       


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                       ...++||||+.+|+|..++...   ..+++..+..++.||+.||.|||+   .+||||||||+|||++.++.+||+|||
T Consensus       114 -~~~~~v~e~~~~g~l~~~l~~~---~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG  186 (350)
T d1rdqe_         114 -SNLYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFG  186 (350)
T ss_dssp             -SEEEEEEECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             -cccccccccccccchhhhHhhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCcCCHHHcccCCCCCEEeeece
Confidence             4789999999999999998763   358999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHHh
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS  675 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~~  675 (747)
                      +|+.+.....               ..+|++.|+|||++.+..|+.++|||||||++|||+||+.||.............
T Consensus       187 ~a~~~~~~~~---------------~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~  251 (350)
T d1rdqe_         187 FAKRVKGRTW---------------TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV  251 (350)
T ss_dssp             TCEECSSCBC---------------CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             eeeecccccc---------------cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence            9986543211               1467889999999999999999999999999999999999997654333222111


Q ss_pred             ccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       676 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      ...         +..+..+++    .+.+++.+||+.||.+|+     |++|+++
T Consensus       252 ~~~---------~~~p~~~s~----~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         252 SGK---------VRFPSHFSS----DLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HCC---------CCCCTTCCH----HHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             cCC---------CCCCccCCH----HHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence            110         111122333    488999999999999994     8999985

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-46  Score=387.53  Aligned_cols=246  Identities=22%  Similarity=0.298  Sum_probs=199.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc---chhcHHHHHHHHHHHh-cCCCCCcceeeeeeeccCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL---KKYSIQNLKVRLDFLS-KLQHPHLVSLLGHCIESGSQDDS  514 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~E~~~l~-~l~H~nIv~l~g~~~~~~~~~~~  514 (747)
                      ++|.+.+.||+|+||+||+|+. .+|+.||||+++..   .....+.+..|+.++. .++|||||++++++.+.      
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~------   75 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTK------   75 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECS------
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccC------
Confidence            6799999999999999999995 57999999999743   2344566777877765 68999999999999874      


Q ss_pred             CCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecc
Q 044236          515 NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY  594 (747)
Q Consensus       515 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  594 (747)
                        +..|+|||||++|+|.++++..   ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        76 --~~~yivmEy~~~g~L~~~i~~~---~~~~e~~~~~~~~qi~~al~ylH~---~~iiHrDikp~NiL~~~~~~~kl~DF  147 (320)
T d1xjda_          76 --ENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADF  147 (320)
T ss_dssp             --SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             --CceeEEEeecCCCcHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCcccceeecCCCceecccc
Confidence              4899999999999999999763   458899999999999999999999   88999999999999999999999999


Q ss_pred             cccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHHHH
Q 044236          595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA  674 (747)
Q Consensus       595 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~~~  674 (747)
                      |+|+.........            ...++++.|+|||++....|+.++|||||||++|||+||+.||.......+....
T Consensus       148 G~a~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i  215 (320)
T d1xjda_         148 GMCKENMLGDAKT------------NTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSI  215 (320)
T ss_dssp             TTCBCCCCTTCCB------------CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             chhhhcccccccc------------cccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9997543221111            1135677899999999999999999999999999999999999765544333222


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHH-HHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE-DVL  724 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~-evl  724 (747)
                      ...         .+..+..+++    .+.+|+.+||+.||++|||+. |++
T Consensus       216 ~~~---------~~~~p~~~s~----~~~dli~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         216 RMD---------NPFYPRWLEK----EAKDLLVKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             HHC---------CCCCCTTSCH----HHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             HcC---------CCCCCccCCH----HHHHHHHHhcccCCCCCcCHHHHHH
Confidence            211         1222223333    488999999999999999995 675

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-45  Score=382.07  Aligned_cols=257  Identities=19%  Similarity=0.220  Sum_probs=190.8

Q ss_pred             ccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchh-----cHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          444 SLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKY-----SIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      .+++||+|+||+||+|+. .+|+.||||+++.....     ..+.+.+|+++|++++|||||++++++...        +
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~--------~   73 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK--------S   73 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT--------T
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccC--------C
Confidence            357899999999999994 57999999999743321     124688999999999999999999999874        3


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..++|||||++|++..+...   ...+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+|
T Consensus        74 ~~~ivmE~~~~~~~~~~~~~---~~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a  147 (299)
T d1ua2a_          74 NISLVFDFMETDLEVIIKDN---SLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLA  147 (299)
T ss_dssp             CCEEEEECCSEEHHHHHTTC---CSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGG
T ss_pred             ceeehhhhhcchHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcceEEecCCCccccccCccc
Confidence            78999999999877766543   3468889999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCC-hhhhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKG-EAFLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~-~~~~~~~~~~  675 (747)
                      +.........            ...+++..|+|||++... .|+.++|||||||++|||+||..||... +.+.+..+..
T Consensus       148 ~~~~~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~  215 (299)
T d1ua2a_         148 KSFGSPNRAY------------THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFE  215 (299)
T ss_dssp             STTTSCCCCC------------CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             cccCCCcccc------------cceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHH
Confidence            7654322111            112467789999988644 5799999999999999999999888643 3343433332


Q ss_pred             ccCcCCcccccc------cc---ccCCC-----CHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQDGRRRIVD------PV---VLTTC-----SQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~~~~~~~d------~~---~~~~~-----~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ...........+      ..   .....     .......+.+|+.+||+.||++|||+.|++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~H  280 (299)
T d1ua2a_         216 TLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  280 (299)
T ss_dssp             HHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             hcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCC
Confidence            211110000000      00   00000     11223458899999999999999999999863

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-44  Score=377.35  Aligned_cols=262  Identities=18%  Similarity=0.218  Sum_probs=194.0

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++++.||+|+||+||+|+. .+|+.||||+++...  ....+.+.+|+++|++++|||||++++++.+.        
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~--------   73 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE--------   73 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEET--------
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccc--------
Confidence            6899999999999999999994 679999999996432  23356789999999999999999999999874        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      +..++||||+.++ +.+++... ....+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||+
T Consensus        74 ~~~~iv~e~~~~~-~~~~~~~~-~~~~l~e~~~~~~~~qil~~L~yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~  148 (298)
T d1gz8a_          74 NKLYLVFEFLHQD-LKKFMDAS-ALTGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGL  148 (298)
T ss_dssp             TEEEEEEECCSEE-HHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTH
T ss_pred             cceeEEEeecCCc-hhhhhhhh-cccCCCHHHHHHHHHHHHHHHHHhhc---CCEEccccCchheeecccCcceeccCCc
Confidence            4899999999764 44444322 24569999999999999999999999   8899999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC-CCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR-TKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~  674 (747)
                      |+.........            ....+++.|++||+..... ++.++|||||||++|||++|+.||.... .+.+..+.
T Consensus       149 a~~~~~~~~~~------------~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~  216 (298)
T d1gz8a_         149 ARAFGVPVRTY------------THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIF  216 (298)
T ss_dssp             HHHHCCCSBCT------------TCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred             ceeccCCcccc------------eeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHH
Confidence            97654322111            1124667888999876655 5789999999999999999999997543 22222222


Q ss_pred             hccCcC---Ccccc-ccccccCC-----------CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQD---GRRRI-VDPVVLTT-----------CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~---~~~~~-~d~~~~~~-----------~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ......   ..... ..+.....           .....+..+.+++.+||+.||.+|||+.|++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         217 RTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             HHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            111000   00000 00000000           011223458899999999999999999999864

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.3e-44  Score=372.77  Aligned_cols=260  Identities=16%  Similarity=0.201  Sum_probs=196.6

Q ss_pred             hCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++++.||+|+||+||+|+.++|+.||||+++...  ....+.+.+|+.+|++++|||||++++++...        +
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~--------~   73 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTK--------K   73 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECS--------S
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccC--------C
Confidence            5789999999999999999998899999999997542  33357899999999999999999999999874        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS  597 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  597 (747)
                      ..+++|||+.++.+..+.+.   ...+++..+..++.||+.||+|||+   .+||||||||+|||++.++.+|++|||+|
T Consensus        74 ~~~i~~e~~~~~~~~~~~~~---~~~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a  147 (286)
T d1ob3a_          74 RLVLVFEHLDQDLKKLLDVC---EGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLA  147 (286)
T ss_dssp             CEEEEEECCSEEHHHHHHTS---TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHH
T ss_pred             ceeEEEEeehhhhHHHHHhh---cCCcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEecccccc
Confidence            78999999988777666554   3569999999999999999999999   88999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHHh
Q 044236          598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMAS  675 (747)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~~  675 (747)
                      ..........            ....+++.|++||.+.. ..++.++|||||||++|||++|+.||.... .+.+..+..
T Consensus       148 ~~~~~~~~~~------------~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~  215 (286)
T d1ob3a_         148 RAFGIPVRKY------------THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR  215 (286)
T ss_dssp             HHHCC---------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred             eecccCcccc------------ceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence            7654322111            11234567888888754 457899999999999999999999997543 223332221


Q ss_pred             ccCcCC------ccc---------cccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          676 FGSQDG------RRR---------IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       676 ~~~~~~------~~~---------~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ......      ...         ...+.............+.+++.+||+.||++|||+.|+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         216 ILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             HHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111000      000         00000001112223445889999999999999999999975

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-43  Score=371.77  Aligned_cols=268  Identities=20%  Similarity=0.247  Sum_probs=197.8

Q ss_pred             HhhCCCccccccCCCCeeEEEEEe-CC-CcEEEEEEeeccc--hhcHHHHHHHHHHHhcC---CCCCcceeeeeeeccCC
Q 044236          438 ATNNFDSLSFMGEGSRGKLYKGRL-EN-GTYVAIRSLTFLK--KYSIQNLKVRLDFLSKL---QHPHLVSLLGHCIESGS  510 (747)
Q Consensus       438 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~-g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l---~H~nIv~l~g~~~~~~~  510 (747)
                      ..++|++++.||+|+||+||+|+. ++ ++.||||+++...  ......+.+|+.+|+.+   +|||||+++++|.... 
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~-   83 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR-   83 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE-
T ss_pred             CcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc-
Confidence            357899999999999999999985 44 6789999997432  22233456777777665   8999999999986532 


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  590 (747)
                        .......+++|||+++|++.......  ...+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+|
T Consensus        84 --~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~~~k  156 (305)
T d1blxa_          84 --TDRETKLTLVFEHVDQDLTTYLDKVP--EPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIK  156 (305)
T ss_dssp             --CSSEEEEEEEEECCSCBHHHHHHHSC--TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEE
T ss_pred             --cccCceEEEEEEeccCCchhhhhhcc--CCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCCCee
Confidence              11235789999999987765444332  4568999999999999999999999   8899999999999999999999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhh
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFL  669 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~  669 (747)
                      |+|||+++........             ....+++.|+|||++....|+.++||||+||++|||+||+.||.... .+.
T Consensus       157 l~dfg~~~~~~~~~~~-------------~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~  223 (305)
T d1blxa_         157 LADFGLARIYSFQMAL-------------TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQ  223 (305)
T ss_dssp             ECSCCSCCCCCGGGGG-------------CCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             ecchhhhhhhcccccC-------------CCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHH
Confidence            9999998765433221             11356789999999999999999999999999999999999987543 333


Q ss_pred             HHHHHhccCcCCcccc----------c---cccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          670 LNEMASFGSQDGRRRI----------V---DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       670 ~~~~~~~~~~~~~~~~----------~---d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      +..+............          .   .+.............+.+|+.+||+.||++|||+.|++++
T Consensus       224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~H  293 (305)
T d1blxa_         224 LGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  293 (305)
T ss_dssp             HHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            3333221111100000          0   0000011122233458899999999999999999999753

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-44  Score=370.24  Aligned_cols=240  Identities=19%  Similarity=0.269  Sum_probs=190.9

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccch------hcHHHHHHHHHHHhcCC--CCCcceeeeeeeccCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKK------YSIQNLKVRLDFLSKLQ--HPHLVSLLGHCIESGS  510 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~E~~~l~~l~--H~nIv~l~g~~~~~~~  510 (747)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++....      .....+.+|+.+|++++  |||||++++++.+.  
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~--   81 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP--   81 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS--
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeC--
Confidence            5688999999999999999994 6799999999974321      11234678999999986  89999999999773  


Q ss_pred             CCCCCCceEEEEEeccCC-CCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-CCc
Q 044236          511 QDDSNTNKVFLVYEYIPN-GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-HRI  588 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~  588 (747)
                            +..++||||+.+ +++.+++...   ..+++.++..++.||++||+|||+   .+|+||||||+|||++. ++.
T Consensus        82 ------~~~~lv~e~~~~~~~l~~~~~~~---~~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NIll~~~~~~  149 (273)
T d1xwsa_          82 ------DSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGE  149 (273)
T ss_dssp             ------SEEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTE
T ss_pred             ------CeEEEEEEeccCcchHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccceEEecCCCe
Confidence                  488999999976 5777777653   469999999999999999999999   89999999999999985 579


Q ss_pred             EEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCC-CcCCceeehhHHHHHHhhCCCCCCCChh
Q 044236          589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLVGPIVTGKGEA  667 (747)
Q Consensus       589 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-s~k~DVwSfGvvl~Elltg~~p~~~~~~  667 (747)
                      +||+|||+|+.......              ....|+..|+|||++....+ +.++|||||||++|||+||+.||.... 
T Consensus       150 vkl~DFG~a~~~~~~~~--------------~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~-  214 (273)
T d1xwsa_         150 LKLIDFGSGALLKDTVY--------------TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-  214 (273)
T ss_dssp             EEECCCTTCEECCSSCB--------------CCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-
T ss_pred             EEECccccceecccccc--------------cccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch-
Confidence            99999999976432211              11356788999999877665 677999999999999999999997432 


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                          .+....          ......+++    ++.+++.+||+.||++|||++|++++
T Consensus       215 ----~i~~~~----------~~~~~~~s~----~~~~li~~~L~~dp~~R~s~~eil~h  255 (273)
T d1xwsa_         215 ----EIIRGQ----------VFFRQRVSS----ECQHLIRWCLALRPSDRPTFEEIQNH  255 (273)
T ss_dssp             ----HHHHCC----------CCCSSCCCH----HHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ----HHhhcc----------cCCCCCCCH----HHHHHHHHHccCCHhHCcCHHHHhcC
Confidence                111110          011122343    48899999999999999999999863

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=376.86  Aligned_cols=264  Identities=19%  Similarity=0.245  Sum_probs=191.7

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceE
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKV  519 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~  519 (747)
                      +|+..++||+|+||+||+|+. .+|+.||||+++.....    ..+|+++|++++|||||+++++|...+.  ......+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----~~~Ei~il~~l~h~niv~~~~~~~~~~~--~~~~~~~   94 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGE--KKDEVYL   94 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS----CCHHHHHHHHCCCTTBCCEEEEEEEC----CCSCCEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH----HHHHHHHHHhcCCCCCCcEEEEEEecCc--cCCceEE
Confidence            577889999999999999995 57999999999754322    2479999999999999999999976431  1224568


Q ss_pred             EEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-cEEEecccccc
Q 044236          520 FLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGISI  598 (747)
Q Consensus       520 ~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~  598 (747)
                      ++|||||++|.+..+.+.......+++..+..++.||+.||+|||+   .+|+||||||+|||++.++ .+||+|||+++
T Consensus        95 ~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~---~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~  171 (350)
T d1q5ka_          95 NLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  171 (350)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTTCCEEECCCTTCE
T ss_pred             EEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHh---cCCcccCCCcceEEEecCCCceeEecccchh
Confidence            9999999876444433322234579999999999999999999999   8999999999999999775 89999999997


Q ss_pred             cccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCCCCCh-hhhHHHHHhc
Q 044236          599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVTGKGE-AFLLNEMASF  676 (747)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~-~~~~~~~~~~  676 (747)
                      .........             ...++..|+|||.+. ...|+.++||||+||++|||++|+.||.... .+.+..+...
T Consensus       172 ~~~~~~~~~-------------~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~  238 (350)
T d1q5ka_         172 QLVRGEPNV-------------SYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV  238 (350)
T ss_dssp             ECCTTSCCC-------------SCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHH
T ss_pred             hccCCcccc-------------cccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHH
Confidence            654322111             124566788888765 4578999999999999999999999986543 2333322211


Q ss_pred             cCcC---------------CccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          677 GSQD---------------GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       677 ~~~~---------------~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ....               .....................+.+|+.+||+.||++|||+.|++++
T Consensus       239 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  303 (350)
T d1q5ka_         239 LGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  303 (350)
T ss_dssp             HCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            1000               0000000000011112233458899999999999999999999863

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-43  Score=366.40  Aligned_cols=274  Identities=14%  Similarity=0.212  Sum_probs=194.3

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++++.||+|+||+||+|+. .+|+.||||++...  .....+.+.+|+++|++++||||+++++++..........
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            47899999999999999999995 67999999998643  2334567889999999999999999999986633211122


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....++||||++++.+..+...   ...++...+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~---~~~~~~~~~~~i~~qil~~l~~lH~---~~ivHrDlKp~NILl~~~~~~kl~dfg  162 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNV---LVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFG  162 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCT---TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCCCccchhhhc---ccccccHHHHHHHHHHHHHHHHhcc---CCEEecCcCchheeecCCCcEEeeecc
Confidence            3568999999988776655433   3458888999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~  673 (747)
                      +++...........        .....+++..|+|||++... .++.++|||||||++|||++|+.||..... .....+
T Consensus       163 ~~~~~~~~~~~~~~--------~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i  234 (318)
T d3blha1         163 LARAFSLAKNSQPN--------RYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALI  234 (318)
T ss_dssp             TCEECCC-----CC--------CCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             eeeecccccccccc--------cccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHH
Confidence            99765433221111        01113567789999988654 689999999999999999999999875433 222222


Q ss_pred             HhccCcC---Ccccc--------ccccccCCCC-H------HHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQD---GRRRI--------VDPVVLTTCS-Q------ESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~---~~~~~--------~d~~~~~~~~-~------~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .......   .....        .......... .      .....+.+|+.+||+.||++|||++|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         235 SQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             HHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence            2211110   00000        0000000000 0      112346789999999999999999999864

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-42  Score=367.26  Aligned_cols=268  Identities=15%  Similarity=0.199  Sum_probs=193.6

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc-hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      +.+|++++.||+|+||+||+|+ ..+|+.||||+++..+ ....+.+.+|+++|++++|||||++++++.....   ...
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~---~~~   83 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTI---EQM   83 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST---TTC
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccc---ccc
Confidence            3568999999999999999998 4689999999997433 3445678999999999999999999999876431   112


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      .. ++++||+.+|+|.+++...    .+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||+
T Consensus        84 ~~-~~l~~~~~~g~L~~~l~~~----~l~~~~i~~i~~qil~al~yLH~---~~iiHRDIKp~NILl~~~~~~kl~DfG~  155 (345)
T d1pmea_          84 KD-VYLVTHLMGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGL  155 (345)
T ss_dssp             CC-EEEEEECCCEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ce-EEEEEeecCCchhhhhhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCcceEEECCCCCEEEcccCc
Confidence            23 4445567799999999742    58999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeee-ccCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD-IQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEMA  674 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~~  674 (747)
                      |+...........         .....+++.|+|||++. ...++.++||||+||++|||++|+.||...... ......
T Consensus       156 a~~~~~~~~~~~~---------~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~  226 (345)
T d1pmea_         156 ARVADPDHDHTGF---------LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHIL  226 (345)
T ss_dssp             CEECCGGGCBCCT---------TCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred             eeeccCCCcccee---------eccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHh
Confidence            9765443221111         01134667889999874 456789999999999999999999998754422 221111


Q ss_pred             hccCcCCcc-----------c-c-ccccc----cCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          675 SFGSQDGRR-----------R-I-VDPVV----LTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       675 ~~~~~~~~~-----------~-~-~d~~~----~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........           . . ..+..    .....+....++.+++.+||+.||.+|||+.|++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         227 GILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            111000000           0 0 00000    000011123358899999999999999999999864

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-42  Score=365.16  Aligned_cols=262  Identities=15%  Similarity=0.227  Sum_probs=191.4

Q ss_pred             hhCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++++.||+|+||+||+|+. .+|+.||||+++..  .....+.+.+|+++|++++|||||+++++|...+..  ..
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~--~~   94 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETL--DD   94 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSST--TT
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccc--cc
Confidence            36799999999999999999994 67999999999743  334456789999999999999999999999764311  12


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ...+++||||+ +++|..+.+.    ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+|++|||
T Consensus        95 ~~~~~lv~e~~-~~~l~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH~---~~IiHrDiKp~NIL~~~~~~~kl~Dfg  166 (346)
T d1cm8a_          95 FTDFYLVMPFM-GTDLGKLMKH----EKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFG  166 (346)
T ss_dssp             CCCCEEEEECC-SEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             cceEEEEEecc-cccHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCcchhhccccccccccccc
Confidence            34679999999 5577776653    359999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeec-cCCCcCCceeehhHHHHHHhhCCCCCCCChhh-hHHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDI-QRTKLEDDVYNFGFILLESLVGPIVTGKGEAF-LLNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~-~~~~~  673 (747)
                      +|+.......               ...+++.|+|||++.. ..++.++||||+||++|||++|+.||...+.. .+..+
T Consensus       167 ~a~~~~~~~~---------------~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~  231 (346)
T d1cm8a_         167 LARQADSEMT---------------GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEI  231 (346)
T ss_dssp             TCEECCSSCC---------------SSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             ceeccCCccc---------------cccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHH
Confidence            9976543211               1235567889998765 45789999999999999999999998755432 22221


Q ss_pred             HhccCcCC------------------ccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDG------------------RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~------------------~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      ........                  ..+..... ...........+.+|+.+||..||.+|||+.|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         232 MKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKD-FASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCC-GGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HhccCCCcHHHHhhhcchhhhhhhccCCcccccc-hHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            11110000                  00000000 011112223457899999999999999999999874

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.7e-42  Score=359.61  Aligned_cols=268  Identities=14%  Similarity=0.147  Sum_probs=198.4

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCce
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNK  518 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~  518 (747)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++.....  ...+.+|++++++++|+|+|..+++|...       .+.
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~-------~~~   77 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAE-------GDY   77 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEE-------TTE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEec-------CCE
Confidence            4689999999999999999984 6799999999875432  24578899999999988877776666543       347


Q ss_pred             EEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeec---CCCcEEEeccc
Q 044236          519 VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLD---EHRIAKLSDYG  595 (747)
Q Consensus       519 ~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl~DFG  595 (747)
                      .++||||+. |++.+.+...  ...+++..+..++.|++.||+|||+   .+||||||||+|||++   .+..+||+|||
T Consensus        78 ~~ivme~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG  151 (299)
T d1ckia_          78 NVMVMELLG-PSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFG  151 (299)
T ss_dssp             EEEEEECCC-CBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCS
T ss_pred             EEEEEEEcC-Cchhhhhhhc--cCCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHhhccccccCCCceeeeeccC
Confidence            899999994 5666665543  4569999999999999999999999   8999999999999875   45679999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhhHHH-HH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE-MA  674 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~~~~-~~  674 (747)
                      +|+............     ........+++.|+|||.+.+..++.++|||||||++|||+||+.||.......... +.
T Consensus       152 ~a~~~~~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~  226 (299)
T d1ckia_         152 LAKKYRDARTHQHIP-----YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYE  226 (299)
T ss_dssp             SCEECBCTTTCCBCC-----CCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HH
T ss_pred             cceecccccccccee-----ccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHH
Confidence            998775443221110     111122467889999999999899999999999999999999999997543221111 11


Q ss_pred             hccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHH
Q 044236          675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQV  733 (747)
Q Consensus       675 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  733 (747)
                      .... . ......+.....++++    +.+++.+||+.+|++||++.++.+.|+.....
T Consensus       227 ~~~~-~-~~~~~~~~~~~~~p~~----~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         227 RISE-K-KMSTPIEVLCKGYPSE----FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             HHHH-H-HHHSCHHHHTTTSCHH----HHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             Hhhc-c-cCCCChhHhccCCCHH----HHHHHHHHccCChhHCcCHHHHHHHHHHHHHH
Confidence            1000 0 0000011122234444    88999999999999999999999988876553

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=8.9e-42  Score=360.52  Aligned_cols=255  Identities=15%  Similarity=0.197  Sum_probs=191.8

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++++.||+|+||+||+|+. .+|+.||||+++..   ..+.+.+|+++|++++ ||||+++++++....      ..
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~------~~  105 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPV------SR  105 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTT------TC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecC------CC
Confidence            5799999999999999999994 67999999998743   3467889999999995 999999999987532      34


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-cEEEecccc
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGI  596 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGl  596 (747)
                      ..++|||||++|+|..+.+      .+++..+..++.||+.||.|||+   .+||||||||+|||++.++ .+||+|||+
T Consensus       106 ~~~~v~e~~~~~~L~~~~~------~l~e~~i~~i~~qil~aL~~LH~---~gIvHrDiKp~NILi~~~~~~vkl~DFG~  176 (328)
T d3bqca1         106 TPALVFEHVNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGL  176 (328)
T ss_dssp             SEEEEEECCCSCBGGGTTT------SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCGGG
T ss_pred             ceeEEEeecCCCcHHHHhc------CCCHHHHHHHHHHHHHHHHHHhh---cccccccccccceEEcCCCCeeeeccccc
Confidence            7899999999999987643      48999999999999999999999   8999999999999998655 699999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhh--hHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAF--LLNEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~--~~~~~  673 (747)
                      |+.........             ...++..|+|||.+... .++.++||||+||++|||++|+.|+......  ....+
T Consensus       177 a~~~~~~~~~~-------------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i  243 (328)
T d3bqca1         177 AEFYHPGQEYN-------------VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRI  243 (328)
T ss_dssp             CEECCTTCCCC-------------SCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHH
T ss_pred             ceeccCCCccc-------------ccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHH
Confidence            97654332111             12356678899987654 4799999999999999999999988643321  11111


Q ss_pred             Hh------------ccCcCC---cccc--------ccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 AS------------FGSQDG---RRRI--------VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~------------~~~~~~---~~~~--------~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      ..            ......   ....        ...............++.+|+.+||+.||++|||++|+++
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         244 AKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             HHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            10            000000   0000        0000001111223345889999999999999999999975

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-42  Score=355.35  Aligned_cols=260  Identities=17%  Similarity=0.173  Sum_probs=195.7

Q ss_pred             hCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeeccc--hhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLK--KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|++++.||+|+||+||+|+ ..+|+.||||+++...  ......+.+|+.+|+.++|||||+++++|...        
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~--------   73 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD--------   73 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECS--------
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccc--------
Confidence            578999999999999999999 4679999999997433  34467889999999999999999999999874        


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...++||||+.++++..+++.   ...+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||.
T Consensus        74 ~~~~iv~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~  147 (292)
T d1unla_          74 KKLTLVFEFCDQDLKKYFDSC---NGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGL  147 (292)
T ss_dssp             SEEEEEEECCSEEHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred             cceeEEeeecccccccccccc---ccccchhHHHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecch
Confidence            478999999999998887765   3468899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccC-CCcCCceeehhHHHHHHhhCCCCCCC-Ch-hhhHHHH
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQR-TKLEDDVYNFGFILLESLVGPIVTGK-GE-AFLLNEM  673 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~s~k~DVwSfGvvl~Elltg~~p~~~-~~-~~~~~~~  673 (747)
                      |+...........            ..++..+++||++.... ++.++|||||||++|||++|+.|+.. .+ .+....+
T Consensus       148 a~~~~~~~~~~~~------------~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~  215 (292)
T d1unla_         148 ARAFGIPVRCYSA------------EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRI  215 (292)
T ss_dssp             CEECCSCCSCCCS------------CCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHH
T ss_pred             hhcccCCCcccee------------eccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHH
Confidence            9765433221111            11234566777766554 68999999999999999999877532 22 2223322


Q ss_pred             HhccCcCCc------ccccc---------ccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHH
Q 044236          674 ASFGSQDGR------RRIVD---------PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLW  725 (747)
Q Consensus       674 ~~~~~~~~~------~~~~d---------~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  725 (747)
                      .........      ....+         ..............+.+|+.+|++.||.+|||++||++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         216 FRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             HHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             HhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            221111000      00000         00001112233445889999999999999999999975

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-42  Score=361.44  Aligned_cols=251  Identities=21%  Similarity=0.286  Sum_probs=192.5

Q ss_pred             hCCCccccccCCCCeeEEEEEe----CCCcEEEEEEeecc----chhcHHHHHHHHHHHhcCCC-CCcceeeeeeeccCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL----ENGTYVAIRSLTFL----KKYSIQNLKVRLDFLSKLQH-PHLVSLLGHCIESGS  510 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~----~~~~~~~~~~E~~~l~~l~H-~nIv~l~g~~~~~~~  510 (747)
                      ++|++.+.||+|+||+||+|+.    .+|+.||||+++..    +....+.+.+|+++|++++| |||+++++++.+.  
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~--  101 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE--  101 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET--
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccC--
Confidence            6799999999999999999984    24899999998642    22334667899999999977 8999999998874  


Q ss_pred             CCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEE
Q 044236          511 QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK  590 (747)
Q Consensus       511 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  590 (747)
                            ...++|||||.+|+|.+++...   ..+.......++.|++.||+|+|+   .+|+||||||+|||++.++.+|
T Consensus       102 ------~~~~~v~e~~~~~~L~~~i~~~---~~~~e~~~~~~~~Qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~vk  169 (322)
T d1vzoa_         102 ------TKLHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVV  169 (322)
T ss_dssp             ------TEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEE
T ss_pred             ------CceeeeeecccccHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHhhc---CCEEeccCCccceeecCCCCEE
Confidence                  4899999999999999999764   346788889999999999999999   8899999999999999999999


Q ss_pred             EecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc--CCCcCCceeehhHHHHHHhhCCCCCCCChh-
Q 044236          591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ--RTKLEDDVYNFGFILLESLVGPIVTGKGEA-  667 (747)
Q Consensus       591 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-  667 (747)
                      |+|||+|+.+.........           ...+++.+++||.+...  .++.++|||||||+||||+||+.||..... 
T Consensus       170 L~DFG~a~~~~~~~~~~~~-----------~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~  238 (322)
T d1vzoa_         170 LTDFGLSKEFVADETERAY-----------DFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK  238 (322)
T ss_dssp             ESCSSEEEECCGGGGGGGC-----------GGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC
T ss_pred             Eeeccchhhhccccccccc-----------ccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH
Confidence            9999999876543322111           12345677888877543  468899999999999999999999865432 


Q ss_pred             hhHHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCC-----CHHHHHH
Q 044236          668 FLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP-----SFEDVLW  725 (747)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~  725 (747)
                      .....+......      ..+.+...+    +.++.+++.+||+.||.+||     |++|+++
T Consensus       239 ~~~~~i~~~~~~------~~~~~~~~~----s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         239 NSQAEISRRILK------SEPPYPQEM----SALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             CCHHHHHHHHHH------CCCCCCTTS----CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             HHHHHHHHhccc------CCCCCcccC----CHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence            222222111000      011122233    34488999999999999999     4788875

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.4e-41  Score=350.57  Aligned_cols=265  Identities=12%  Similarity=0.055  Sum_probs=202.7

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCC-CCcceeeeeeeccCCCCCCCCc
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH-PHLVSLLGHCIESGSQDDSNTN  517 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H-~nIv~l~g~~~~~~~~~~~~~~  517 (747)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++.....  ...+.+|++.++.++| +||+.+++++...        .
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~--------~   74 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEG--------L   74 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEET--------T
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC--cHHHHHHHHHHHHhcCCCCCCEEEEEeecC--------C
Confidence            5788999999999999999994 5799999998864332  2356788899999975 8999999988763        4


Q ss_pred             eEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC-----CCcEEEe
Q 044236          518 KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE-----HRIAKLS  592 (747)
Q Consensus       518 ~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-----~~~~kl~  592 (747)
                      ..++||||+ +|+|.++++..  ...+++.++..++.|++.||+|||+   .+||||||||+|||++.     ++.+||+
T Consensus        75 ~~~~vme~~-~~~l~~~~~~~--~~~~~~~~~~~i~~q~~~~l~~lH~---~giiHrDiKp~Nili~~~~~~~~~~vkl~  148 (293)
T d1csna_          75 HNVLVIDLL-GPSLEDLLDLC--GRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVV  148 (293)
T ss_dssp             EEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             ccEEEEEec-CCCHHHHHHhh--ccchhhHHHHHHHHHHHHHHHHHHH---CCceeccCCccceeecCcccccCCceEEc
Confidence            789999999 67999988754  3468999999999999999999999   89999999999999974     5789999


Q ss_pred             cccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChhhh---
Q 044236          593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL---  669 (747)
Q Consensus       593 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~---  669 (747)
                      |||+|+............     ........|++.|+|||.+....++.++|||||||++|||+||+.||.......   
T Consensus       149 DFG~a~~~~~~~~~~~~~-----~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~  223 (293)
T d1csna_         149 DFGMVKFYRDPVTKQHIP-----YREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ  223 (293)
T ss_dssp             CCTTCEESBCTTTCCBCC-----CCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHH
T ss_pred             ccceeEEcccCcccccee-----ecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHH
Confidence            999998765432211110     011122468899999999999899999999999999999999999997432211   


Q ss_pred             -HHHHHhccCcCCccccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHHHHHHHHHh
Q 044236          670 -LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNLQYAAQVQ  734 (747)
Q Consensus       670 -~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  734 (747)
                       ...+.......     ..+.+...+|+    ++.+++..|+..+|++||+++.+.+.|+.+.+..
T Consensus       224 ~~~~i~~~~~~~-----~~~~l~~~~p~----~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~~  280 (293)
T d1csna_         224 KYERIGEKKQST-----PLRELCAGFPE----EFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL  280 (293)
T ss_dssp             HHHHHHHHHHHS-----CHHHHTTTSCH----HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccCCC-----ChHHhcCCCCH----HHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHc
Confidence             11111110000     01112223444    3888999999999999999999998888775533

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-41  Score=357.70  Aligned_cols=263  Identities=17%  Similarity=0.181  Sum_probs=191.2

Q ss_pred             hCCCccccccCCCCeeEEEEEe-CCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCC
Q 044236          440 NNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNT  516 (747)
Q Consensus       440 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~  516 (747)
                      ++|+++++||+|+||+||+|+. .+|+.||||++...  .....+.+.+|+.+|++++|||||+++++|...+.  ....
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~--~~~~   94 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKT--LEEF   94 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCS--TTTC
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccc--cccC
Confidence            6799999999999999999995 57999999999743  23445678899999999999999999999976431  1234


Q ss_pred             ceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEecccc
Q 044236          517 NKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI  596 (747)
Q Consensus       517 ~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  596 (747)
                      ...|+|||||.++.+ +.+..     .+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+|++|||+
T Consensus        95 ~~~~iv~Ey~~~~l~-~~~~~-----~~~~~~i~~~~~qil~gl~~LH~---~giiHrDlKP~Nil~~~~~~~kl~df~~  165 (355)
T d2b1pa1          95 QDVYLVMELMDANLC-QVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGL  165 (355)
T ss_dssp             CEEEEEEECCSEEHH-HHHTS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             ceeEEEEeccchHHH-Hhhhc-----CCCHHHHHHHHHHHHHHHHHhhh---cccccccCCccccccccccceeeechhh
Confidence            689999999976544 44432     48899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCCCCChh-hhHHHHHh
Q 044236          597 SIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEA-FLLNEMAS  675 (747)
Q Consensus       597 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~~~~~~-~~~~~~~~  675 (747)
                      ++........             ...+++..|+|||++.+..++.++||||+||++|||++|+.||..... .....+..
T Consensus       166 ~~~~~~~~~~-------------~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~  232 (355)
T d2b1pa1         166 ARTAGTSFMM-------------TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIE  232 (355)
T ss_dssp             ----------------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             hhcccccccc-------------ccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHH
Confidence            8754332211             123567789999999888999999999999999999999999864432 22222111


Q ss_pred             ccCcC-------------------------CccccccccccCC---CCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          676 FGSQD-------------------------GRRRIVDPVVLTT---CSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       676 ~~~~~-------------------------~~~~~~d~~~~~~---~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .....                         .............   .....+..+.+|+.+|++.||++|||++|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         233 QLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             HHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            10000                         0000000000010   122346678999999999999999999999854

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=355.37  Aligned_cols=262  Identities=14%  Similarity=0.184  Sum_probs=191.7

Q ss_pred             hhCCCccccccCCCCeeEEEEE-eCCCcEEEEEEeecc--chhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCC
Q 044236          439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFL--KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSN  515 (747)
Q Consensus       439 ~~~f~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~  515 (747)
                      .++|++++.||+|+||+||+|+ ..+|+.||||+++..  +....+.+.+|+++|++++|||||++++++......   .
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~---~   93 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSL---E   93 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSST---T
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecccc---c
Confidence            4679999999999999999999 567999999999743  233456788999999999999999999998653211   1


Q ss_pred             CceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCCcEEEeccc
Q 044236          516 TNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG  595 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  595 (747)
                      ....+++|||+.+|+|.++++.    ..+++.++..++.||+.||+|||+   .+|+||||||+|||++.++.+|++|||
T Consensus        94 ~~~~~~i~~~~~gg~L~~~~~~----~~l~e~~~~~i~~qil~aL~~LH~---~giiHrDiKp~NILi~~~~~~kl~dfg  166 (348)
T d2gfsa1          94 EFNDVYLVTHLMGADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG  166 (348)
T ss_dssp             TCCCCEEEEECCSEEHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCC-
T ss_pred             cCceEEEEEeecCCchhhhccc----ccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCCccccccccccccccccc
Confidence            2244667778889999999864    359999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccchhcccCCCCCcccccceeeecCCcceeeeeecc-CCCcCCceeehhHHHHHHhhCCCCCCCChhhh-HHHH
Q 044236          596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQ-RTKLEDDVYNFGFILLESLVGPIVTGKGEAFL-LNEM  673 (747)
Q Consensus       596 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~s~k~DVwSfGvvl~Elltg~~p~~~~~~~~-~~~~  673 (747)
                      ++........               ...++..|++||..... .++.++|||||||++|||++|+.||...+... ...+
T Consensus       167 ~a~~~~~~~~---------------~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i  231 (348)
T d2gfsa1         167 LARHTDDEMT---------------GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLI  231 (348)
T ss_dssp             ---CCTGGGS---------------SSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             hhcccCcccc---------------cccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9865432211               12355678888876554 46889999999999999999999987544322 2222


Q ss_pred             HhccCcCCc------------------cccccccccCCCCHHHHHHHHHHHhHccCCCCCCCCCHHHHHHH
Q 044236          674 ASFGSQDGR------------------RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       674 ~~~~~~~~~------------------~~~~d~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  726 (747)
                      .........                  ........ ..........+.+|+.+|++.||.+|||+.|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~H  301 (348)
T d2gfsa1         232 LRLVGTPGAELLKKISSESARNYIQSLTQMPKMNF-ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  301 (348)
T ss_dssp             HHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCH-HHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHhcCCCChHHhhhccchhhhhhhhhcccCCCcch-hhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcC
Confidence            111110000                  00000000 00001123457899999999999999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.1e-37  Score=327.09  Aligned_cols=289  Identities=27%  Similarity=0.430  Sum_probs=248.7

Q ss_pred             ChhHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccCCccceEeCC----CcEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 044236            2 QTSQTQVLLQLRKHLEYPSPLDIWGNYEGDLCNLTSTAHVSITCQD----NSVTGLKIMGDKPVKENTAYNGHPIPNQTL   77 (747)
Q Consensus         2 ~~~~~~~l~~~k~~~~~~~~l~~w~~~~~~~c~~~~~~~~~v~c~~----~~v~~l~l~~~~~~~~~~~~~~~~~~~~~l   77 (747)
                      .++|++||++||+.+.+|..+++|..+ +|||..   .|.||+|+.    .+|++|+|.+...       .+        
T Consensus         4 ~~~e~~aLl~~k~~~~~~~~l~sW~~~-~d~C~~---~w~gv~C~~~~~~~~v~~L~L~~~~l-------~g--------   64 (313)
T d1ogqa_           4 NPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCNR---TWLGVLCDTDTQTYRVNNLDLSGLNL-------PK--------   64 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGTTCCTT-SCTTTT---CSTTEEECCSSSCCCEEEEEEECCCC-------SS--------
T ss_pred             CHHHHHHHHHHHHHCCCCCcCCCCCCC-CCCCCC---cCCCeEEeCCCCcEEEEEEECCCCCC-------CC--------
Confidence            378999999999999998889999765 899961   134799963    2699999987644       11        


Q ss_pred             CCccCCCcccccccCCCCCCEEEeec-cCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCC
Q 044236           78 SESFSIDSFVTTLTRLTTLRVLSLVS-LGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDD  156 (747)
Q Consensus        78 ~~~~~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~  156 (747)
                           ...+|..+++|++|++|+|++ |++.|.+|++|++|++|++|||++|++.+..|..+..+.+|+.+++++|.+.+
T Consensus        65 -----~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~  139 (313)
T d1ogqa_          65 -----PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG  139 (313)
T ss_dssp             -----CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             -----CCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccc
Confidence                 124677999999999999987 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCCEEEccCCcCCCCCchhhcCCccC-cEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCC--
Q 044236          157 NVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL-TDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLM--  232 (747)
Q Consensus       157 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L-~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~--  232 (747)
                      .+|..++++++|+.+++++|.+++.+|..+..+..+ +.+++++|++++..|. +..+ .+..+++++|.+.+.+|..  
T Consensus       140 ~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~~~~~~~~  218 (313)
T d1ogqa_         140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCC
T ss_pred             cCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            999999999999999999999999999999999876 8899999999998885 4444 4557999999988877653  


Q ss_pred             -CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCC
Q 044236          233 -PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSI  311 (747)
Q Consensus       233 -~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~  311 (747)
                       ...++.+++++|.+++.+| .++.+++|+.|+|++|+|+|.+|..|+++++|++|+|++|+|+|.+|. +..++.|   
T Consensus       219 ~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L---  293 (313)
T d1ogqa_         219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRF---  293 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGS---
T ss_pred             cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCC---
Confidence             4678999999999998765 688999999999999999999999999999999999999999999995 3333333   


Q ss_pred             Cccceeeecccc
Q 044236          312 SDKRVVKFGGNC  323 (747)
Q Consensus       312 ~~~~~~~~~~n~  323 (747)
                         ....+++|.
T Consensus       294 ---~~l~l~~N~  302 (313)
T d1ogqa_         294 ---DVSAYANNK  302 (313)
T ss_dssp             ---CGGGTCSSS
T ss_pred             ---CHHHhCCCc
Confidence               345566774

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-36  Score=324.17  Aligned_cols=262  Identities=15%  Similarity=0.184  Sum_probs=189.1

Q ss_pred             CCCccccccCCCCeeEEEEEe-CCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-----------CCCcceeeeeeecc
Q 044236          441 NFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-----------HPHLVSLLGHCIES  508 (747)
Q Consensus       441 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-----------H~nIv~l~g~~~~~  508 (747)
                      +|++++.||+|+||+||+|+. .+|+.||||+++... ...+.+.+|+.++++++           |+|||++++++...
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            488999999999999999994 679999999997433 23456788999888775           57899999988753


Q ss_pred             CCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecCCC-
Q 044236          509 GSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-  587 (747)
Q Consensus       509 ~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-  587 (747)
                      +      ....+++|+++..+..............+++..+..++.||++||+|||+.  .+|+||||||+|||++.++ 
T Consensus        93 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~~~~~  164 (362)
T d1q8ya_          93 G------PNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDS  164 (362)
T ss_dssp             E------TTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEET
T ss_pred             c------ccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhh--cCcccccCChhHeeeeccCc
Confidence            3      346677888776655443333333355688899999999999999999974  6799999999999998654 


Q ss_pred             -----cEEEecccccccccccchhcccCCCCCcccccceeeecCCcceeeeeeccCCCcCCceeehhHHHHHHhhCCCCC
Q 044236          588 -----IAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT  662 (747)
Q Consensus       588 -----~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~k~DVwSfGvvl~Elltg~~p~  662 (747)
                           .+|++|||.|+.......               ..+++..|+|||++....++.++||||+||+++||++|+.||
T Consensus       165 ~~~~~~~kl~dfg~s~~~~~~~~---------------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF  229 (362)
T d1q8ya_         165 PENLIQIKIADLGNACWYDEHYT---------------NSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLF  229 (362)
T ss_dssp             TTTEEEEEECCCTTCEETTBCCC---------------SCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccccceeeEeecccccccccccc---------------cccccccccChhhccccCCCccccccchHHHHHHHHHCCCCC
Confidence                 489999999865432111               124567889999999999999999999999999999999998


Q ss_pred             CCChh-------hhHHHHHh-ccCc-----------------CCccccccc----------cccCCCCHHHHHHHHHHHh
Q 044236          663 GKGEA-------FLLNEMAS-FGSQ-----------------DGRRRIVDP----------VVLTTCSQESLSIVVSITN  707 (747)
Q Consensus       663 ~~~~~-------~~~~~~~~-~~~~-----------------~~~~~~~d~----------~~~~~~~~~~~~~~~~l~~  707 (747)
                      ...+.       ..+..... .+..                 .........          .............+.+|+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~  309 (362)
T d1q8ya_         230 EPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLS  309 (362)
T ss_dssp             ---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHG
T ss_pred             CCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHH
Confidence            64321       11111111 0000                 000000000          0011234566778999999


Q ss_pred             HccCCCCCCCCCHHHHHHH
Q 044236          708 KCICPEPSSRPSFEDVLWN  726 (747)
Q Consensus       708 ~Cl~~dP~~RPs~~evl~~  726 (747)
                      +|++.||.+|||++|++++
T Consensus       310 ~mL~~dP~~Rpta~e~L~H  328 (362)
T d1q8ya_         310 PMLQLDPRKRADAGGLVNH  328 (362)
T ss_dssp             GGGCSSTTTCBCHHHHHTC
T ss_pred             HHCCCChhHCcCHHHHhcC
Confidence            9999999999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=8e-27  Score=243.67  Aligned_cols=228  Identities=28%  Similarity=0.411  Sum_probs=207.3

Q ss_pred             CCCCCCCCCC-ccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEE
Q 044236           70 HPIPNQTLSE-SFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLT  148 (747)
Q Consensus        70 ~~~~~~~l~~-~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  148 (747)
                      ..+..++|+. +...+.+|..|++|++|++|+|++|+|.+..|..+..+.+|+.|++++|.+.+.+|..|+++++|+.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            3566677876 566778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCcccccCCCCC-CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCC
Q 044236          149 MDTNFFDDNVPDWWDSLSNL-TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLD  226 (747)
Q Consensus       149 L~~N~~~~~~p~~~~~l~~L-~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~  226 (747)
                      +++|.+.+.+|+.+..+.++ +.++++.|++++..|..+.++..+ .+++++|.+.+.+|. +..+++|+.+++++|.+.
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            99999999999999999886 889999999999999999888655 799999999998885 678999999999999999


Q ss_pred             CCCCCC--CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeeccccc-Cccc-cC
Q 044236          227 SGLPLM--PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM-LSGT-LP  299 (747)
Q Consensus       227 ~~~~~~--~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~-l~g~-ip  299 (747)
                      +.+|..  .++|+.|+|++|+|+|.+|.+|+++++|++|+|++|+|+|.+|. ++++++|+.+++++|+ ++|. +|
T Consensus       235 ~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             ccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            877654  57899999999999999999999999999999999999998885 6889999999999997 6664 44

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.8e-23  Score=210.34  Aligned_cols=204  Identities=24%  Similarity=0.255  Sum_probs=182.4

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc-cCCCCCCCcccccCCCCCCEEE
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD-TNFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      +++++|+|++|+|++..+..|.++++|++||+++|.+....+..+.++..+..+... .|.++...|..|.++++|+.|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            468999999999987767789999999999999999999999999999999998765 5677777788999999999999


Q ss_pred             ccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcCcc
Q 044236          173 LKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLFSG  248 (747)
Q Consensus       173 l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l~~  248 (747)
                      +++|.+....+..+..+.+|+.+++++|++++..+. +..+++|+.|++++|++.+..+..   .++|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            999999887788888999999999999999977664 778899999999999998655543   4678999999999999


Q ss_pred             cCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccc
Q 044236          249 AIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT  297 (747)
Q Consensus       249 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~  297 (747)
                      ..|..|..+++|+.|++++|++++.++..|..+++|++|+|++|++.+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            9999999999999999999999999999999999999999999998754

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=1e-23  Score=202.73  Aligned_cols=132  Identities=16%  Similarity=0.124  Sum_probs=104.3

Q ss_pred             ccccccCCCCeeEEEEEeCCCcEEEEEEeeccc------------------hhcHHHHHHHHHHHhcCCCCCcceeeeee
Q 044236          444 SLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK------------------KYSIQNLKVRLDFLSKLQHPHLVSLLGHC  505 (747)
Q Consensus       444 ~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~------------------~~~~~~~~~E~~~l~~l~H~nIv~l~g~~  505 (747)
                      +.++||+|+||+||+|+..+|+.||||+++...                  ........+|...+.++.|.+++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            467899999999999998889999999875211                  01123456688899999999999987653


Q ss_pred             eccCCCCCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceeecC
Q 044236          506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDE  585 (747)
Q Consensus       506 ~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  585 (747)
                      .            .+++|||++++.+.++          +......++.|+++|++|||+   .+|+||||||+|||+++
T Consensus        84 ~------------~~lvme~~~~~~~~~l----------~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~NILv~~  138 (191)
T d1zara2          84 G------------NAVLMELIDAKELYRV----------RVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVSE  138 (191)
T ss_dssp             T------------TEEEEECCCCEEGGGC----------CCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEET
T ss_pred             C------------CEEEEEeeccccccch----------hhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhheeeeC
Confidence            1            2799999988655442          223345789999999999999   89999999999999996


Q ss_pred             CCcEEEeccccccccc
Q 044236          586 HRIAKLSDYGISIIME  601 (747)
Q Consensus       586 ~~~~kl~DFGla~~~~  601 (747)
                      + .++|+|||.|+...
T Consensus       139 ~-~~~liDFG~a~~~~  153 (191)
T d1zara2         139 E-GIWIIDFPQSVEVG  153 (191)
T ss_dssp             T-EEEECCCTTCEETT
T ss_pred             C-CEEEEECCCcccCC
Confidence            5 48999999997654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-21  Score=196.65  Aligned_cols=198  Identities=22%  Similarity=0.254  Sum_probs=153.2

Q ss_pred             cCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCE
Q 044236           91 TRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTV  170 (747)
Q Consensus        91 ~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~  170 (747)
                      .+...+..++.++++++. +|+.+.  ++|++|||++|.|++..+..|.++++|++|+|++|.++. +| .++.+++|+.
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence            455566667888888864 676553  478888888888877667778888888888888888875 33 3577888888


Q ss_pred             EEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCCCCCC---CCCcceeecCCCcC
Q 044236          171 LSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLM---PKGLVTVLLSRNLF  246 (747)
Q Consensus       171 L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~ls~N~l  246 (747)
                      |+|++|++++ ++..+.++++|+.|++++|.+....+. +..+.++..|++++|.+....+..   ...+..+++++|++
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            8888888874 466778888888888888888765553 567788888888888877544433   35678888888888


Q ss_pred             cccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCc
Q 044236          247 SGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLS  295 (747)
Q Consensus       247 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  295 (747)
                      ++..+..|..+++|++|+|++|+|+.+++ .+..+++|+.|+|++|++.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~-~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCCCSEEECCSCCBC
T ss_pred             cccCccccccccccceeecccCCCcccCh-hHCCCCCCCEEEecCCCCC
Confidence            88888889999999999999999996555 4567899999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.3e-21  Score=198.77  Aligned_cols=230  Identities=23%  Similarity=0.200  Sum_probs=196.2

Q ss_pred             CCCCCCCCccCCCccc-ccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcc-cCCCCCCCCccccCCCCCCEEEc
Q 044236           72 IPNQTLSESFSIDSFV-TTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMS-SNFLFGAIPSGISRLVRLQTLTM  149 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls-~N~l~~~~p~~~~~l~~L~~L~L  149 (747)
                      +..++|+.|. +..+| .+|.++++|++|++++|.+.+..+..+.++..++.|+.+ .|.+....|..|.++++|++|+|
T Consensus        34 ~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCc-CCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            4557777764 45666 469999999999999999999888899999999999875 56677777889999999999999


Q ss_pred             ccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCCC
Q 044236          150 DTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSG  228 (747)
Q Consensus       150 ~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~~  228 (747)
                      ++|.+....+..+..+.+|+.+++++|++++..+..|..+++|+.|++++|++++..+. +.++++|+.+++++|++++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            99999888888899999999999999999987788899999999999999999987764 78899999999999999987


Q ss_pred             CCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCC
Q 044236          229 LPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLS  303 (747)
Q Consensus       229 ~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~  303 (747)
                      .|..   .++|+.|++++|.+++..|..|+.+++|+.|+|++|.+...-+.. .-...++.+....+.+.+..|..+.
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHc
Confidence            7754   367899999999999999999999999999999999998754321 1123456667777888877887764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=4.9e-20  Score=190.81  Aligned_cols=247  Identities=22%  Similarity=0.200  Sum_probs=172.1

Q ss_pred             CCCCCCCCccCCCcccc-cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcc
Q 044236           72 IPNQTLSESFSIDSFVT-TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD  150 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  150 (747)
                      +..++|+.+ .+.+++. +|.++++|++|++++|.+....|..|.++++|++|+|++|+++. +|..+  ...|..|++.
T Consensus        33 l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          33 TALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVH  108 (305)
T ss_dssp             CCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECC
T ss_pred             CCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhcc
Confidence            445566655 3455553 57777888888888887777667777788888888888887754 44332  3467777777


Q ss_pred             cCCCCCCCcccccCCCCCCEEEccCCcCC--CCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCC
Q 044236          151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLK--GQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG  228 (747)
Q Consensus       151 ~N~~~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~  228 (747)
                      .|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.++.....  .+++|+.|++++|...+.
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCC
Confidence            77777766666777777777777776543  33456677788888888888887643222  357888888888887766


Q ss_pred             CCCC---CCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCC
Q 044236          229 LPLM---PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCG  305 (747)
Q Consensus       229 ~~~~---~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~  305 (747)
                      .+..   ...++.|++++|.+++..+.+|..+++|++|+|++|+|+.++ ..|..+++|+.|+|++|+|+..-...|...
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeecccccccccc-cccccccCCCEEECCCCccCccChhhccCc
Confidence            5543   356788888888888888888888888888888888888764 467888888888888888873322333333


Q ss_pred             CCCCCCCccceeeeccccCC
Q 044236          306 SKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       306 ~~l~~~~~~~~~~~~~n~~~  325 (747)
                      ..+........+.+.+|...
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSC
T ss_pred             chhcccCCCCEEECCCCcCc
Confidence            33333344555666676543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.3e-20  Score=189.20  Aligned_cols=201  Identities=23%  Similarity=0.231  Sum_probs=172.8

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCc
Q 044236          114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLT  193 (747)
Q Consensus       114 ~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~  193 (747)
                      ..+...+...|.+++.|+ .+|..+.  ++|++|+|++|.|++..+..|.++++|+.|+|++|+|+. +| .++.+++|+
T Consensus         6 ~~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             EcccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            346677888899999997 4787664  579999999999998777899999999999999999984 44 357899999


Q ss_pred             EEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC---CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcC
Q 044236          194 DIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL---MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDL  270 (747)
Q Consensus       194 ~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~---~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  270 (747)
                      .|++++|++++..+.+..+++|+.|++++|.+.+..+.   ...++..|++++|.++...+..+..+++|+.|++++|+|
T Consensus        81 ~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            99999999998877889999999999999998765443   346789999999999988888999999999999999999


Q ss_pred             cccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCCC
Q 044236          271 SGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLSY  326 (747)
Q Consensus       271 ~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~~  326 (747)
                      +++++..|..+++|++|+|++|+|+ .+|..+..+..|      +.+.+++|...|
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L------~~L~L~~Np~~C  209 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL------PFAFLHGNPWLC  209 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC------SEEECCSCCBCC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCC------CEEEecCCCCCC
Confidence            9999999999999999999999999 899877655444      456677775543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=4.5e-20  Score=191.14  Aligned_cols=222  Identities=21%  Similarity=0.287  Sum_probs=189.7

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      ++|++|+|++|+|+...+.+|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|..+  ...|..|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhc
Confidence            579999999999977666689999999999999999999889999999999999999999986 45433  468999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccC--CC-CCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccC
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGK--LP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI  250 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p-~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~  250 (747)
                      .+|.+.+..+..+.....+..++...|.....  .+ .+..+++|+.+++++|.+.......+++|+.|++++|.+++..
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCC
Confidence            99999987777888888999999988865432  22 3678899999999999987644446789999999999999999


Q ss_pred             chhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCCCCCCccceeeeccccCC
Q 044236          251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNCLS  325 (747)
Q Consensus       251 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l~~~~~~~~~~~~~n~~~  325 (747)
                      +..|..++.++.|++++|.+++.++..+..+++|++|+|++|.|+ .+|..+..++.|+      .+.+++|.++
T Consensus       188 ~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~------~L~Ls~N~i~  255 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ------VVYLHNNNIS  255 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC------EEECCSSCCC
T ss_pred             hhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC------EEECCCCccC
Confidence            999999999999999999999999999999999999999999998 6787776666554      4455555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.6e-18  Score=185.06  Aligned_cols=238  Identities=27%  Similarity=0.311  Sum_probs=150.9

Q ss_pred             cEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccC
Q 044236           49 SVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSN  128 (747)
Q Consensus        49 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N  128 (747)
                      .++.|.+.+.......+.-....+..++++.| .+..++ .+++|++|++|+|++|.|.+. + .++++++|+.|++++|
T Consensus        45 ~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N-~l~~l~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~  120 (384)
T d2omza2          45 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNN  120 (384)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCCccccccCCCCCEEeCcCC-cCCCCc-cccCCcccccccccccccccc-c-cccccccccccccccc
Confidence            46777776654311011001123444566655 344454 377888888888888887653 3 2778888888888777


Q ss_pred             CCCCCC---------------------------------------------------------------CccccCCCCCC
Q 044236          129 FLFGAI---------------------------------------------------------------PSGISRLVRLQ  145 (747)
Q Consensus       129 ~l~~~~---------------------------------------------------------------p~~~~~l~~L~  145 (747)
                      .+++..                                                               +..+..+++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (384)
T d2omza2         121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE  200 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence            654321                                                               12344556777


Q ss_pred             EEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCC
Q 044236          146 TLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKL  225 (747)
Q Consensus       146 ~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l  225 (747)
                      .|++++|.+++..|  +..+++|+.|++++|+++.  +..+..+++|+.|++++|.+++. +.+..+++|+.|++++|.+
T Consensus       201 ~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         201 SLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI  275 (384)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCC
T ss_pred             eeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCC-CcccccccCCEeeccCccc
Confidence            77777777776544  4556778888888887764  23567778888888888887754 3466777888888887777


Q ss_pred             CCCCCC-----------------------CCCCcceeecCCCcCcccCchhhcCCcccCeeecccCcCcccCCcccCCCC
Q 044236          226 DSGLPL-----------------------MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP  282 (747)
Q Consensus       226 ~~~~~~-----------------------~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  282 (747)
                      .+..+.                       ...+++.|++++|++++..|  +..+++|+.|+|++|+|++++  .+.+++
T Consensus       276 ~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~l~~l~  351 (384)
T d2omza2         276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLT  351 (384)
T ss_dssp             CCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCT
T ss_pred             CCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--hHcCCC
Confidence            643221                       12356677777777776432  666777777777777776643  366777


Q ss_pred             ccceeecccccCccccC
Q 044236          283 NISYLHLASNMLSGTLP  299 (747)
Q Consensus       283 ~L~~L~l~~N~l~g~ip  299 (747)
                      +|++|++++|++++..|
T Consensus       352 ~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         352 NINWLSAGHNQISDLTP  368 (384)
T ss_dssp             TCCEEECCSSCCCBCGG
T ss_pred             CCCEEECCCCcCCCChh
Confidence            77777777777775543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.4e-17  Score=164.08  Aligned_cols=190  Identities=21%  Similarity=0.320  Sum_probs=150.9

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+..|.+|+.|++.+|+|.. ++ .+.+|++|++|+|++|.+++..|  +.++++|++|++++|.++. ++ .+..+++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L  109 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSI  109 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred             CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-cc-cccccccc
Confidence            46778899999999999965 54 58899999999999999876544  8899999999999998875 33 58889999


Q ss_pred             CEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCC-CCCCCcceeecCCCcCc
Q 044236          169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLP-LMPKGLVTVLLSRNLFS  247 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~ls~N~l~  247 (747)
                      +.|++++|...+.  ..+.....+..+.++++.+... ..+...++|+.|++++|.+....+ ...++|++|+|++|+++
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhchh-hhhccccccccccccccccccchhhcccccceecccCCCccC
Confidence            9999999987753  3466778889999988888653 346677889999999998865433 23467888888888887


Q ss_pred             ccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeeccc
Q 044236          248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLAS  291 (747)
Q Consensus       248 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  291 (747)
                      +. + .|..+++|+.|+|++|+|++++|  +.++++|+.|++++
T Consensus       187 ~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 DI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            63 3 37888888888888888887764  77888888888863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.1e-17  Score=176.24  Aligned_cols=194  Identities=25%  Similarity=0.384  Sum_probs=167.5

Q ss_pred             cccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCC
Q 044236           87 VTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLS  166 (747)
Q Consensus        87 ~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~  166 (747)
                      ...+..+++++.+++++|.+.+..|  +...++|+.|++++|.++. + +.+..+++|+.|++++|.+++..+  ++.++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~  263 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLT  263 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccc
Confidence            4567889999999999999987655  5677899999999999875 3 468899999999999999987543  88899


Q ss_pred             CCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCC-CCCCCcceeecCCCc
Q 044236          167 NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLP-LMPKGLVTVLLSRNL  245 (747)
Q Consensus       167 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~ls~N~  245 (747)
                      +|+.|++++|.+++..  .+.++..++.+.++.|.+++ ++.+..+++++.|++++|++++..+ ..+++|++|++++|.
T Consensus       264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCEeeccCcccCCCC--cccccccccccccccccccc-ccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCC
Confidence            9999999999998643  37789999999999999986 4567889999999999999987543 246789999999999


Q ss_pred             CcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeeccccc
Q 044236          246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM  293 (747)
Q Consensus       246 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~  293 (747)
                      |++ ++ .|.++++|++|+|++|+|++++|  +.++++|+.|+|++|.
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            986 44 69999999999999999999876  8899999999999984

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.2e-17  Score=163.16  Aligned_cols=198  Identities=17%  Similarity=0.116  Sum_probs=152.1

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCC-CccccCCCCCCEEEcc-cCCCCCCCcccccCCCCCCEE
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMD-TNFFDDNVPDWWDSLSNLTVL  171 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~-~N~~~~~~p~~~~~l~~L~~L  171 (747)
                      +++++|+|++|.|....+..|.++++|++|+|++|.+...+ +..|.+++++++|.+. .|.+....+..|.++++|+.|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            47899999999997766668999999999999999987755 4578999999999976 477888888889999999999


Q ss_pred             EccCCcCCCCCc-hhhcCCccCcEEecccCccccCCC-CCCCC-CcCCEEEccCCCCCCCCCCCC--CCccee-ecCCCc
Q 044236          172 SLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLP-DMSAL-TSLHVLDLRENKLDSGLPLMP--KGLVTV-LLSRNL  245 (747)
Q Consensus       172 ~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l-~~L~~L~L~~N~l~~~~~~~~--~~L~~L-~ls~N~  245 (747)
                      ++++|.+....+ ..+..+..+..+..+++.+....+ .+..+ ..+..|++++|+++...+..+  .++.++ .+++|.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            999999975433 234456666666777777765444 34444 478889999998875433322  334444 567788


Q ss_pred             CcccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeeccc
Q 044236          246 FSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLAS  291 (747)
Q Consensus       246 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  291 (747)
                      ++...+..|.++++|++|+|++|+|+.+++..|.++++|+.+++.+
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            8865566788899999999999999988888888888888877643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=7.9e-18  Score=161.23  Aligned_cols=129  Identities=21%  Similarity=0.262  Sum_probs=108.6

Q ss_pred             CCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCC-CccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 044236           96 LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK  174 (747)
Q Consensus        96 L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~  174 (747)
                      .++++.++++++ .+|..+.  +++++|+|++|.|++.+ +..|.++++|+.|+|++|.+....+..|..+++|+.|+|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            357888888885 5776653  68899999999998644 5677889999999999999998888899999999999999


Q ss_pred             CCcCCCCCchhhcCCccCcEEecccCccccCCCC-CCCCCcCCEEEccCCCCCC
Q 044236          175 SNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDS  227 (747)
Q Consensus       175 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~L~~L~L~~N~l~~  227 (747)
                      +|+|+...|..|.++++|+.|+|++|+|++..+. |..+++|++|+|++|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999988888899999999999999999887775 6788889999988887754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2e-17  Score=160.72  Aligned_cols=166  Identities=27%  Similarity=0.321  Sum_probs=92.8

Q ss_pred             CCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEE
Q 044236           92 RLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL  171 (747)
Q Consensus        92 ~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L  171 (747)
                      .|.+|+.|++++|.+.. ++ .+..+++|++|+|++|.+++..  .++++++|++|++++|.+++ +| .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccc
Confidence            34455555555555543 22 2455555555555555554322  24455555555555555543 22 34555555555


Q ss_pred             EccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCc
Q 044236          172 SLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIP  251 (747)
Q Consensus       172 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p  251 (747)
                      ++++|.+..  ...+.+++.|+.+++++|.++. .+.+..+++|                     +.+++++|.+++. +
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L---------------------~~l~l~~n~l~~i-~  172 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITD-ITVLSRLTKL---------------------DTLSLEDNQISDI-V  172 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTC---------------------SEEECCSSCCCCC-G
T ss_pred             ccccccccc--cccccccccccccccccccccc-cccccccccc---------------------ccccccccccccc-c
Confidence            555555432  2234445555555555555442 2223344444                     4455555555543 3


Q ss_pred             hhhcCCcccCeeecccCcCcccCCcccCCCCccceeeccc
Q 044236          252 QQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLAS  291 (747)
Q Consensus       252 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  291 (747)
                       .+.++++|+.|+|++|+|+.++  .+.++++|++|+|++
T Consensus       173 -~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 -PLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             -cccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEccC
Confidence             3778889999999999998753  478899999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=4.8e-17  Score=156.59  Aligned_cols=163  Identities=30%  Similarity=0.445  Sum_probs=102.4

Q ss_pred             cCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCE
Q 044236           91 TRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTV  170 (747)
Q Consensus        91 ~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~  170 (747)
                      ..+.+|+.|++++|+|.. ++ .+..|++|++|+|++|.+++..|  ++++++|++|++++|.+... + .+.++++|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccc
Confidence            456667777777777643 32 36667777777777777665332  66777777777777766542 2 3666777777


Q ss_pred             EEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccC
Q 044236          171 LSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAI  250 (747)
Q Consensus       171 L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~  250 (747)
                      |++++|.+...  ..+.++++|+.|++++|.+.. ++.+..+++|+.|++++|+++                     + +
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~---------------------~-l  165 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVT---------------------D-L  165 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCC---------------------C-C
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhcc-ccccccccccccccccccccc---------------------C-C
Confidence            77776666532  235566666666666666643 344555566666665555543                     2 2


Q ss_pred             chhhcCCcccCeeecccCcCcccCCcccCCCCcccee
Q 044236          251 PQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL  287 (747)
Q Consensus       251 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  287 (747)
                      + .|+++++|+.|++++|+++.++  .+..+++|+.|
T Consensus       166 ~-~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         166 K-PLANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             G-GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             c-cccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            2 3677788888888888887753  36677777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-16  Score=158.66  Aligned_cols=209  Identities=15%  Similarity=0.129  Sum_probs=163.2

Q ss_pred             CCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCC-cccccCCCCCCEEEcc
Q 044236           96 LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNV-PDWWDSLSNLTVLSLK  174 (747)
Q Consensus        96 L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~-p~~~~~l~~L~~L~l~  174 (747)
                      .++++.++++++ .+|+.+-  +++++|||++|.++...+..|.++++|++|+|++|.+...+ +..|.++++++.|++.
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            367888888885 6776553  58999999999998777778999999999999999987754 5578999999999976


Q ss_pred             -CCcCCCCCchhhcCCccCcEEecccCccccCCC--CCCCCCcCCEEEccCCCCCCCCCC----CCCCcceeecCCCcCc
Q 044236          175 -SNQLKGQFPSSICRIATLTDIAMSNNELSGKLP--DMSALTSLHVLDLRENKLDSGLPL----MPKGLVTVLLSRNLFS  247 (747)
Q Consensus       175 -~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~L~~L~ls~N~l~  247 (747)
                       .|.+....+..|.++++|+.|++++|.+....+  .+..+..+..+...++.+....+.    ....+..|++++|.++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             478887888889999999999999999975433  244566677777777777643322    2356888999999999


Q ss_pred             ccCchhhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCc-CCCCCCCC
Q 044236          248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK-DLSCGSKL  308 (747)
Q Consensus       248 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~~l  308 (747)
                      ...+..|....-++.+++++|+|+.+++..|.++++|+.|++++|+++ .+|. .+..+..|
T Consensus       167 ~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L  227 (242)
T d1xwdc1         167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL  227 (242)
T ss_dssp             EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred             ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCccc
Confidence            766665554433445567889999999999999999999999999998 5554 34444433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=5.8e-18  Score=162.16  Aligned_cols=158  Identities=19%  Similarity=0.182  Sum_probs=125.4

Q ss_pred             CCCCEEEeeccCCCCCC-ChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEE
Q 044236           94 TTLRVLSLVSLGIWGPL-PDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLS  172 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~-p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~  172 (747)
                      +++++|+|++|.|++.+ +..|.++++|+.|+|++|.+.+..+..|..+++|++|+|++|+++...|..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            57899999999998744 66789999999999999999999999999999999999999999998899999999999999


Q ss_pred             ccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCch
Q 044236          173 LKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ  252 (747)
Q Consensus       173 l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~  252 (747)
                      |++|+|++..|..|.++++|+.|+|++|.+....+...-...++.                     +.+..|.++...|.
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~---------------------~~l~~~~~~c~~p~  167 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK---------------------KSLNGGAARCGAPS  167 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHH---------------------HCCSGGGCBBCSST
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhh---------------------hcccCCCeEeCCCh
Confidence            999999998889999999999999999998754332111111222                     23334444444554


Q ss_pred             hhcCCcccCeeecccCcCcccCC
Q 044236          253 QFGELAQLQHLDLSFNDLSGIPP  275 (747)
Q Consensus       253 ~~~~l~~L~~L~Ls~N~l~~~~~  275 (747)
                      .+   ..++.++|+.|.|.-..+
T Consensus       168 ~l---~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         168 KV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             TT---TTSBGGGSCTTTCCCCCC
T ss_pred             hh---cCCEeeecCHhhCcCCCC
Confidence            33   445667777777765443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.9e-16  Score=155.92  Aligned_cols=200  Identities=24%  Similarity=0.333  Sum_probs=160.9

Q ss_pred             CCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEc
Q 044236           94 TTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL  173 (747)
Q Consensus        94 ~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l  173 (747)
                      .++..+++..+.+.+.+  .+..|.+|+.|++++|.++. ++ ++..|++|++|+|++|.+++..|  +..+++|+.|++
T Consensus        19 ~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            33344566667776654  45678999999999999975 44 58999999999999999987544  899999999999


Q ss_pred             cCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC-CCCCcceeecCCCcCcccCch
Q 044236          174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL-MPKGLVTVLLSRNLFSGAIPQ  252 (747)
Q Consensus       174 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~-~~~~L~~L~ls~N~l~~~~p~  252 (747)
                      ++|.++. + ..+.++++|+.++++++...+. +.+...+.+..+.++++.+....+. ..++|+.|++++|.++...  
T Consensus        93 ~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--  167 (227)
T d1h6ua2          93 SGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--  167 (227)
T ss_dssp             CSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--
T ss_pred             ccccccc-c-cccccccccccccccccccccc-chhccccchhhhhchhhhhchhhhhccccccccccccccccccch--
Confidence            9999874 3 4688999999999999988753 4466788899999999988765442 3577999999999998543  


Q ss_pred             hhcCCcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCC
Q 044236          253 QFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL  308 (747)
Q Consensus       253 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l  308 (747)
                      .|+++++|+.|+|++|+++++++  +.++++|++|+|++|++++ +|. +..++.|
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L  219 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSP-LANTSNL  219 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CGG-GTTCTTC
T ss_pred             hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCC-Ccc-cccCCCC
Confidence            48899999999999999998654  7899999999999999985 432 4444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.3e-16  Score=149.86  Aligned_cols=176  Identities=23%  Similarity=0.369  Sum_probs=134.6

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      ..+.+..+.+++.++  ...+.+|+.|++++|.+.. + +++..+++|++|+|++|.+++..|  ++++++|+.|++++|
T Consensus        21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            334566677766544  2467889999999999864 3 357889999999999999987543  889999999999999


Q ss_pred             cCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcccCchhhcC
Q 044236          177 QLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGE  256 (747)
Q Consensus       177 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~  256 (747)
                      .+.. ++ .+.+++.|+.|++++|.+.. ++.+..+++|+.|++++|++..                      + ..+..
T Consensus        95 ~~~~-~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~----------------------~-~~l~~  148 (199)
T d2omxa2          95 QIAD-IT-PLANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISD----------------------I-SALSG  148 (199)
T ss_dssp             CCCC-CG-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCC----------------------C-GGGTT
T ss_pred             cccc-cc-cccccccccccccccccccc-ccccchhhhhHHhhhhhhhhcc----------------------c-ccccc
Confidence            8864 33 47888889999998888764 3456677778887777776542                      2 35778


Q ss_pred             CcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCcCCCCCCCC
Q 044236          257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL  308 (747)
Q Consensus       257 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~~l  308 (747)
                      +++|+.|++++|++++.++  +.++++|+.|++++|+++. +| .+..+++|
T Consensus       149 ~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L  196 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD-IS-VLAKLTNL  196 (199)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGGGCTTC
T ss_pred             cccccccccccccccCCcc--ccCCCCCCEEECCCCCCCC-Cc-cccCCCCC
Confidence            8999999999999998754  8899999999999999974 44 34444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=5.3e-16  Score=150.52  Aligned_cols=162  Identities=22%  Similarity=0.303  Sum_probs=130.8

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  151 (747)
                      +..++++.+. +..++ .+..+++|+.|+|++|.|++ ++ .+++|++|++|++++|.+++ +| .+.++++|+.|++++
T Consensus        48 L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          48 IDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             CCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             ccEEECcCCC-CCCch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccc
Confidence            3344554432 33333 47899999999999999977 44 37899999999999999975 44 589999999999999


Q ss_pred             CCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCCCCCCCcCCEEEccCCCCCCCCCC
Q 044236          152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL  231 (747)
Q Consensus       152 N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~~~~~~  231 (747)
                      |.+..  ...+..+++|+.++++.|.+++  +..+.++++|+.+++++|.+++ ++.+.++++|+.|+|++|+++.    
T Consensus       122 ~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i~~----  192 (210)
T d1h6ta2         122 NGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHISD----  192 (210)
T ss_dssp             SCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCB----
T ss_pred             ccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-cccccCCCCCCEEECCCCCCCC----
Confidence            99865  3468899999999999999975  4567789999999999999986 4568889999999888887652    


Q ss_pred             CCCCcceeecCCCcCcccCchhhcCCcccCeeeccc
Q 044236          232 MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSF  267 (747)
Q Consensus       232 ~~~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~  267 (747)
                                        +| .|.++++|++|+|++
T Consensus       193 ------------------l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 ------------------LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ------------------CG-GGTTCTTCSEEEEEE
T ss_pred             ------------------Ch-hhcCCCCCCEEEccC
Confidence                              44 478899999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.54  E-value=9.3e-14  Score=145.43  Aligned_cols=39  Identities=28%  Similarity=0.424  Sum_probs=25.2

Q ss_pred             CcccCeeecccCcCcccCCcccCCCCccceeecccccCccccCc
Q 044236          257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK  300 (747)
Q Consensus       257 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~  300 (747)
                      +++|++|+|++|+|+.++.    .+++|+.|+|++|+|+ .+|.
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~-~l~~  321 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLA-EVPE  321 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-CCCC
T ss_pred             CCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCC-cccc
Confidence            4567777777777765542    2466777777777776 5554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-14  Score=133.02  Aligned_cols=129  Identities=23%  Similarity=0.222  Sum_probs=105.6

Q ss_pred             cccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCC
Q 044236           89 TLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNL  168 (747)
Q Consensus        89 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L  168 (747)
                      .+.++.+|+.|+|++|+|+. +|..+..+++|+.||||+|.++.. + .|..+++|++|+|++|.++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            46788899999999999965 577778899999999999999754 3 58899999999999999988766677889999


Q ss_pred             CEEEccCCcCCCCCc-hhhcCCccCcEEecccCccccCCC----CCCCCCcCCEEEc
Q 044236          169 TVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLP----DMSALTSLHVLDL  220 (747)
Q Consensus       169 ~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p----~~~~l~~L~~L~L  220 (747)
                      +.|++++|+++.... ..+..+++|+.|++++|.++....    .+..+++|++||-
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999999999975322 467888999999999999875432    1566788888774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1e-13  Score=121.44  Aligned_cols=104  Identities=25%  Similarity=0.290  Sum_probs=84.7

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN  176 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N  176 (747)
                      |+|+|++|+|+ .+| .++++++|++|||++|.++ .+|..|+.+++|+.|++++|.++.. | .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            67899999986 455 4888999999999999986 5677888999999999999998863 4 4888999999999999


Q ss_pred             cCCCCC-chhhcCCccCcEEecccCccccC
Q 044236          177 QLKGQF-PSSICRIATLTDIAMSNNELSGK  205 (747)
Q Consensus       177 ~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~  205 (747)
                      +++... ...+..+++|+.|++++|.++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            987543 25678888888888888888753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-13  Score=127.78  Aligned_cols=111  Identities=17%  Similarity=0.121  Sum_probs=92.3

Q ss_pred             hccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccC
Q 044236          113 KIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL  192 (747)
Q Consensus       113 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L  192 (747)
                      .|.++.+|+.|||++|.++. +|..+..+++|++|+|++|.++.. + .|..+++|+.|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            46788899999999999965 477778899999999999999864 3 58899999999999999997666667889999


Q ss_pred             cEEecccCccccCC--CCCCCCCcCCEEEccCCCCC
Q 044236          193 TDIAMSNNELSGKL--PDMSALTSLHVLDLRENKLD  226 (747)
Q Consensus       193 ~~L~l~~N~l~~~~--p~~~~l~~L~~L~L~~N~l~  226 (747)
                      +.|++++|.++...  ..+..+++|++|++++|.++
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc
Confidence            99999999997532  34667788888888887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.9e-13  Score=118.57  Aligned_cols=78  Identities=21%  Similarity=0.355  Sum_probs=45.0

Q ss_pred             CEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccC
Q 044236          121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNN  200 (747)
Q Consensus       121 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N  200 (747)
                      +.|||++|+++ .+| .+..+++|++|+|++|.++. +|+.|+.+++|+.|++++|+|+. +| .+.++++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            45666666665 333 35666666666666666653 45556666666666666666653 22 3555555555555555


Q ss_pred             ccc
Q 044236          201 ELS  203 (747)
Q Consensus       201 ~l~  203 (747)
                      +++
T Consensus        76 ~i~   78 (124)
T d1dcea3          76 RLQ   78 (124)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.40  E-value=4.9e-12  Score=131.97  Aligned_cols=140  Identities=23%  Similarity=0.254  Sum_probs=99.8

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEccc
Q 044236           72 IPNQTLSESFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  151 (747)
                      ++.++|+.+ .+.++|..   +++|++|+|++|+|+ .+|+.+   .+|+.|++++|.++. ++..   .+.|++|+|++
T Consensus        40 l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          40 AHELELNNL-GLSSLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             CSEEECTTS-CCSCCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCSC---CTTCCEEECCS
T ss_pred             CCEEEeCCC-CCCCCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhhh---ccccccccccc
Confidence            456667654 35567753   468999999999996 678654   578999999999863 3321   14699999999


Q ss_pred             CCCCCCCcccccCCCCCCEEEccCCcCCCCCc------------------hhhcCCccCcEEecccCccccC--------
Q 044236          152 NFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFP------------------SSICRIATLTDIAMSNNELSGK--------  205 (747)
Q Consensus       152 N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p------------------~~~~~l~~L~~L~l~~N~l~~~--------  205 (747)
                      |.+.. +|. ++.+++|+.|++++|.++...+                  ..+..++.++.|++++|.+...        
T Consensus       108 n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~  185 (353)
T d1jl5a_         108 NQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE  185 (353)
T ss_dssp             SCCSS-CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             ccccc-ccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccc
Confidence            99975 564 6889999999999998764321                  2345567778888887765432        


Q ss_pred             -----------CCCCCCCCcCCEEEccCCCC
Q 044236          206 -----------LPDMSALTSLHVLDLRENKL  225 (747)
Q Consensus       206 -----------~p~~~~l~~L~~L~L~~N~l  225 (747)
                                 ++.+..++.|+.+++++|..
T Consensus       186 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~  216 (353)
T d1jl5a_         186 SIVAGNNILEELPELQNLPFLTTIYADNNLL  216 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence                       23345567788888877754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=4e-14  Score=135.32  Aligned_cols=131  Identities=21%  Similarity=0.280  Sum_probs=104.4

Q ss_pred             CcccccccCCCCCCEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCccccc
Q 044236           84 DSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWD  163 (747)
Q Consensus        84 ~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~  163 (747)
                      ..++.++..|++|+.|+|++|+|.. ++ .|.+|++|+.|+|++|.++ .+|..+..+++|+.|++++|.++..  +.+.
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccc
Confidence            4456788999999999999999964 55 5889999999999999986 5676666677899999999998863  3578


Q ss_pred             CCCCCCEEEccCCcCCCCCc-hhhcCCccCcEEecccCccccCCCC-----------CCCCCcCCEEE
Q 044236          164 SLSNLTVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLPD-----------MSALTSLHVLD  219 (747)
Q Consensus       164 ~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~-----------~~~l~~L~~L~  219 (747)
                      .+++|+.|++++|+++.... ..+..+++|+.|++++|.+....+.           +..+++|+.||
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88999999999999975322 4688899999999999988755443           34577777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1e-13  Score=132.45  Aligned_cols=89  Identities=22%  Similarity=0.339  Sum_probs=47.0

Q ss_pred             CChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCC
Q 044236          110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRI  189 (747)
Q Consensus       110 ~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l  189 (747)
                      +|.+|..|++|++|+|++|.++. ++ .|.++++|++|+|++|.++. +|..+..+++|+.|++++|+++. + ..+.++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-L-SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccccccccccccccccccccccc-c-cccccc
Confidence            44556666666666666666643 33 35556666666666665543 34333444455555555555543 1 234444


Q ss_pred             ccCcEEecccCccc
Q 044236          190 ATLTDIAMSNNELS  203 (747)
Q Consensus       190 ~~L~~L~l~~N~l~  203 (747)
                      ++|+.|++++|+++
T Consensus       115 ~~L~~L~L~~N~i~  128 (198)
T d1m9la_         115 VNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHSSEEEESEEECC
T ss_pred             ccccccccccchhc
Confidence            55555555555444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.7e-11  Score=110.44  Aligned_cols=83  Identities=19%  Similarity=0.114  Sum_probs=40.6

Q ss_pred             CCEEEeeccCCCCCCChhccCCCCCCEEEcccC-CCCCCCCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 044236           96 LRVLSLVSLGIWGPLPDKIHRLSSLELLDMSSN-FLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK  174 (747)
Q Consensus        96 L~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~  174 (747)
                      ...++.+++++. ..|..+..+++|+.|+|++| .++...+..|.++++|+.|+|++|+++...|..|..+++|+.|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555542 24444555555555555433 2444444445555555555555555544444445555555555555


Q ss_pred             CCcCC
Q 044236          175 SNQLK  179 (747)
Q Consensus       175 ~N~l~  179 (747)
                      +|+|+
T Consensus        89 ~N~l~   93 (156)
T d2ifga3          89 FNALE   93 (156)
T ss_dssp             SSCCS
T ss_pred             CCCCc
Confidence            55544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-12  Score=132.62  Aligned_cols=181  Identities=21%  Similarity=0.209  Sum_probs=101.2

Q ss_pred             CCCCCCEEEeeccCCCCC-CChhccCCCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccC-CCCCC-CcccccCCCCC
Q 044236           92 RLTTLRVLSLVSLGIWGP-LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN-FFDDN-VPDWWDSLSNL  168 (747)
Q Consensus        92 ~l~~L~~L~L~~n~i~~~-~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~~~~~-~p~~~~~l~~L  168 (747)
                      ...+|++|+|+++.+... ++..+.++++|++|+|++|.++...+..++.+++|++|+|+++ .++.. +...+.++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            445677777777766533 3444667777777777777776666667777777777777763 44321 12223456777


Q ss_pred             CEEEccCC-cCCCC-CchhhcC-CccCcEEecccC--ccccC-CCC-CCCCCcCCEEEccCCCCCCCCCCCCCCcceeec
Q 044236          169 TVLSLKSN-QLKGQ-FPSSICR-IATLTDIAMSNN--ELSGK-LPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLL  241 (747)
Q Consensus       169 ~~L~l~~N-~l~~~-~p~~~~~-l~~L~~L~l~~N--~l~~~-~p~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l  241 (747)
                      +.|+++++ .++.. +...+.. .++|+.|++++.  .++.. +.. +.++++|+.|++++|.                 
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~-----------------  186 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-----------------  186 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-----------------
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc-----------------
Confidence            77777764 33311 1222322 356777777653  22211 111 2345566666666543                 


Q ss_pred             CCCcCcccCchhhcCCcccCeeeccc-CcCcccCCcccCCCCccceeecccc
Q 044236          242 SRNLFSGAIPQQFGELAQLQHLDLSF-NDLSGIPPSVLFSLPNISYLHLASN  292 (747)
Q Consensus       242 s~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~l~~N  292 (747)
                         .+++.....+..+++|++|+|++ +.++......+.++++|+.|++.++
T Consensus       187 ---~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         187 ---MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ---TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ---CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence               23333444555566666666666 3455544444556666666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.8e-11  Score=110.28  Aligned_cols=109  Identities=17%  Similarity=0.077  Sum_probs=79.4

Q ss_pred             CCCCCEEEcccCCCCCCCCccccCCCCCCEEEcccC-CCCCCCcccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEE
Q 044236          117 LSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN-FFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDI  195 (747)
Q Consensus       117 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  195 (747)
                      ....+.++.+++.+. ..|..+..+++|++|+|++| .++...++.|.++++|+.|+|++|+|+...|..|.++++|+.|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            344566777777764 45667777888888888655 4776666778888888888888888887777778888888888


Q ss_pred             ecccCccccCCCCCCCCCcCCEEEccCCCCC
Q 044236          196 AMSNNELSGKLPDMSALTSLHVLDLRENKLD  226 (747)
Q Consensus       196 ~l~~N~l~~~~p~~~~l~~L~~L~L~~N~l~  226 (747)
                      +|++|+|+...+......+|+.|+|++|.+.
T Consensus        86 ~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eccCCCCcccChhhhccccccccccCCCccc
Confidence            8888888765555444446888888888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2e-12  Score=131.00  Aligned_cols=193  Identities=17%  Similarity=0.161  Sum_probs=111.2

Q ss_pred             CEEEeeccCCCCCCChhccCCCCCCEEEcccCCCCCC-CCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccC
Q 044236           97 RVLSLVSLGIWGPLPDKIHRLSSLELLDMSSNFLFGA-IPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS  175 (747)
Q Consensus        97 ~~L~L~~n~i~~~~p~~~~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~  175 (747)
                      ..+.+....+..++. ......+|++|||++|.++.. ++..+..+++|++|+|++|.+++..+..+..+++|+.|++++
T Consensus        26 ~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          26 IAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             SEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             eEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            344444444332222 233445677777777766533 344566677777777777776666666667777777777776


Q ss_pred             C-cCCCC-CchhhcCCccCcEEecccC-ccccC-CC-CCC-CCCcCCEEEccCCCCCCCCCCCCCCcceeecCCCcCcc-
Q 044236          176 N-QLKGQ-FPSSICRIATLTDIAMSNN-ELSGK-LP-DMS-ALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSG-  248 (747)
Q Consensus       176 N-~l~~~-~p~~~~~l~~L~~L~l~~N-~l~~~-~p-~~~-~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ls~N~l~~-  248 (747)
                      + .++.. +..-+.++++|+.|+++++ .++.. +. .+. ..++|+.|+++++.                   +.++. 
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------------~~i~~~  165 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-------------------KNLQKS  165 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG-------------------GGSCHH
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc-------------------cccccc
Confidence            4 34321 1122234566666666653 23211 00 011 12344444444321                   12322 


Q ss_pred             cCchhhcCCcccCeeecccC-cCcccCCcccCCCCccceeeccc-ccCccccCcCCCCCCCCC
Q 044236          249 AIPQQFGELAQLQHLDLSFN-DLSGIPPSVLFSLPNISYLHLAS-NMLSGTLPKDLSCGSKLD  309 (747)
Q Consensus       249 ~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~l~~-N~l~g~ip~~~~~~~~l~  309 (747)
                      .+...+..+++|+.|+|++| .+++.....+..+++|++|++++ +.++......+...+.|+
T Consensus       166 ~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            23344567899999999986 58877777888999999999999 467765555555444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.18  E-value=2.6e-12  Score=134.14  Aligned_cols=210  Identities=19%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             ccccccCCCCCCEEEeeccCCCCC----CChhccCCCCCCEEEcccCCCCCC----------CCccccCCCCCCEEEccc
Q 044236           86 FVTTLTRLTTLRVLSLVSLGIWGP----LPDKIHRLSSLELLDMSSNFLFGA----------IPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        86 ~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~L~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~L~~  151 (747)
                      +...+.....|+.|+|++|.|...    +-..+...++|+.|+++++.....          +...+..+++|+.|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            334566667777777777766332    333455667777777776654221          112344566777777777


Q ss_pred             CCCCCC----CcccccCCCCCCEEEccCCcCCCCCch-------------hhcCCccCcEEecccCccccCCC-----CC
Q 044236          152 NFFDDN----VPDWWDSLSNLTVLSLKSNQLKGQFPS-------------SICRIATLTDIAMSNNELSGKLP-----DM  209 (747)
Q Consensus       152 N~~~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~-------------~~~~l~~L~~L~l~~N~l~~~~p-----~~  209 (747)
                      |.++..    +...+...++|+.|++++|.+...-..             .......|+.+.+++|.++..--     .+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            776654    223344567777777777765421000             11234566777777776642110     12


Q ss_pred             CCCCcCCEEEccCCCCCCC-----C---CCCCCCcceeecCCCcCccc----CchhhcCCcccCeeecccCcCcccCCcc
Q 044236          210 SALTSLHVLDLRENKLDSG-----L---PLMPKGLVTVLLSRNLFSGA----IPQQFGELAQLQHLDLSFNDLSGIPPSV  277 (747)
Q Consensus       210 ~~l~~L~~L~L~~N~l~~~-----~---~~~~~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  277 (747)
                      .....|+.|+|++|.++..     +   ....+.|+.|+|++|.|+..    +...+..+++|+.|+|++|.|++.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3455677777777766531     0   11234567777777766532    3344556677777777777776532222


Q ss_pred             c----C--CCCccceeecccccCc
Q 044236          278 L----F--SLPNISYLHLASNMLS  295 (747)
Q Consensus       278 l----~--~l~~L~~L~l~~N~l~  295 (747)
                      +    .  ..+.|++|++++|.++
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHhhhccCCCCCEEECCCCcCC
Confidence            2    1  2345777777777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.18  E-value=2.1e-12  Score=134.93  Aligned_cols=210  Identities=19%  Similarity=0.220  Sum_probs=147.7

Q ss_pred             ccccccCCCCCCEEEeeccCCCCC----------CChhccCCCCCCEEEcccCCCCCC----CCccccCCCCCCEEEccc
Q 044236           86 FVTTLTRLTTLRVLSLVSLGIWGP----------LPDKIHRLSSLELLDMSSNFLFGA----IPSGISRLVRLQTLTMDT  151 (747)
Q Consensus        86 ~~~~l~~l~~L~~L~L~~n~i~~~----------~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~  151 (747)
                      +...+...++|+.|+++.+.+...          +-..+...++|+.|||++|.+...    +...+...++|++|++++
T Consensus        51 l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  130 (344)
T d2ca6a1          51 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN  130 (344)
T ss_dssp             HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccc
Confidence            344677888999999987765322          223456788999999999988664    344556778999999999


Q ss_pred             CCCCCCCccc-------------ccCCCCCCEEEccCCcCCCC----CchhhcCCccCcEEecccCccccC------CCC
Q 044236          152 NFFDDNVPDW-------------WDSLSNLTVLSLKSNQLKGQ----FPSSICRIATLTDIAMSNNELSGK------LPD  208 (747)
Q Consensus       152 N~~~~~~p~~-------------~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~------~p~  208 (747)
                      |.++..-...             ....+.|+.|++++|+++..    +...+..+..|+.|++++|.+...      ...
T Consensus       131 n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~  210 (344)
T d2ca6a1         131 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG  210 (344)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhh
Confidence            9874321111             13567899999999988632    333456678899999999988642      123


Q ss_pred             CCCCCcCCEEEccCCCCCCC----CC---CCCCCcceeecCCCcCcccCchh----hc--CCcccCeeecccCcCcccC-
Q 044236          209 MSALTSLHVLDLRENKLDSG----LP---LMPKGLVTVLLSRNLFSGAIPQQ----FG--ELAQLQHLDLSFNDLSGIP-  274 (747)
Q Consensus       209 ~~~l~~L~~L~L~~N~l~~~----~~---~~~~~L~~L~ls~N~l~~~~p~~----~~--~l~~L~~L~Ls~N~l~~~~-  274 (747)
                      +..+++|+.|+|++|.++..    +.   ...++|++|+|++|.|++.-...    +.  ..+.|+.|+|++|+|+..- 
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            56788899999999987531    11   12467899999999998643332    32  2367999999999987532 


Q ss_pred             ---Cccc-CCCCccceeecccccCc
Q 044236          275 ---PSVL-FSLPNISYLHLASNMLS  295 (747)
Q Consensus       275 ---~~~l-~~l~~L~~L~l~~N~l~  295 (747)
                         ...+ .++++|+.|+|++|++.
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHHccCCCCCEEECCCCcCC
Confidence               2223 25788999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8e-11  Score=127.14  Aligned_cols=109  Identities=21%  Similarity=0.100  Sum_probs=66.1

Q ss_pred             CCccCcEEecccCccccCCC-----CCCCCCcCCEEEccCCCCCCC--------CCCCCCCcceeecCCCcCcccCch--
Q 044236          188 RIATLTDIAMSNNELSGKLP-----DMSALTSLHVLDLRENKLDSG--------LPLMPKGLVTVLLSRNLFSGAIPQ--  252 (747)
Q Consensus       188 ~l~~L~~L~l~~N~l~~~~p-----~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~L~~L~ls~N~l~~~~p~--  252 (747)
                      ....|+.|++++|.+.....     .+...+.+..+++++|.++..        +......|+.+++++|.++.....  
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            34567778888877753221     134567788888888877421        112234577778888777654333  


Q ss_pred             --hhcCCcccCeeecccCcCccc----CCccc-CCCCccceeecccccCcc
Q 044236          253 --QFGELAQLQHLDLSFNDLSGI----PPSVL-FSLPNISYLHLASNMLSG  296 (747)
Q Consensus       253 --~~~~l~~L~~L~Ls~N~l~~~----~~~~l-~~l~~L~~L~l~~N~l~g  296 (747)
                        .+...++|+.|+|++|+|+..    +...+ ...+.|+.|+|++|.++.
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence              233455788888888877642    12222 245667788888887763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.7e-11  Score=127.29  Aligned_cols=87  Identities=16%  Similarity=0.046  Sum_probs=62.2

Q ss_pred             CCCCcCCEEEccCCCCCCCCC-------CCCCCcceeecCCCcCcccCchhh-----cCCcccCeeecccCcCcccCCcc
Q 044236          210 SALTSLHVLDLRENKLDSGLP-------LMPKGLVTVLLSRNLFSGAIPQQF-----GELAQLQHLDLSFNDLSGIPPSV  277 (747)
Q Consensus       210 ~~l~~L~~L~L~~N~l~~~~~-------~~~~~L~~L~ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~~~~  277 (747)
                      .....|+.+++++|.+.....       .....+..+++++|.++......+     .....|+.+++++|.++......
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~  331 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh
Confidence            345679999999998764211       113568899999999875332222     23468999999999988654333


Q ss_pred             ----cCCCCccceeecccccCcc
Q 044236          278 ----LFSLPNISYLHLASNMLSG  296 (747)
Q Consensus       278 ----l~~l~~L~~L~l~~N~l~g  296 (747)
                          +...++|++|+|++|+++.
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~i~~  354 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNRLED  354 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHH
T ss_pred             cccccccccchhhhheeeecccC
Confidence                3456789999999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.8e-08  Score=90.52  Aligned_cols=82  Identities=22%  Similarity=0.246  Sum_probs=38.8

Q ss_pred             ccCCCCCCEEEcccCCCCCCC--cccccCCCCCCEEEccCCcCCCCCchhhcCCccCcEEecccCccccCCCC-------
Q 044236          138 ISRLVRLQTLTMDTNFFDDNV--PDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-------  208 (747)
Q Consensus       138 ~~~l~~L~~L~L~~N~~~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-------  208 (747)
                      +..+++|++|+|++|+++..-  +..+..+++|+.|+|++|+++...+-.+.....|+.|++++|.++.....       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            334455555555555554321  23344555555555555555532222222333455555555555543321       


Q ss_pred             -CCCCCcCCEEE
Q 044236          209 -MSALTSLHVLD  219 (747)
Q Consensus       209 -~~~l~~L~~L~  219 (747)
                       +..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence             23455666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.6e-08  Score=89.79  Aligned_cols=87  Identities=21%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             CChhccCCCCCCEEEcccCCCCCC--CCccccCCCCCCEEEcccCCCCCCCcccccCCCCCCEEEccCCcCCCCCch---
Q 044236          110 LPDKIHRLSSLELLDMSSNFLFGA--IPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPS---  184 (747)
Q Consensus       110 ~p~~~~~L~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~---  184 (747)
                      ++..+..+++|++||||+|+++..  ++..+..+++|+.|+|++|.++...+-.+....+|+.|++++|.++.....   
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            444445677777777777777653  234566677777777777777654333334445677777777777655442   


Q ss_pred             ----hhcCCccCcEEe
Q 044236          185 ----SICRIATLTDIA  196 (747)
Q Consensus       185 ----~~~~l~~L~~L~  196 (747)
                          .+..+++|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence                245667777664

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.17  E-value=2.8e-06  Score=83.55  Aligned_cols=149  Identities=15%  Similarity=0.083  Sum_probs=95.6

Q ss_pred             HHHHHHhhCCCccccccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCC-CCCcceeeeeeeccCCC
Q 044236          433 EELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ-HPHLVSLLGHCIESGSQ  511 (747)
Q Consensus       433 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~-H~nIv~l~g~~~~~~~~  511 (747)
                      .++.+..+.|...+..+.++.+.||+.... ++.+.||+...........+.+|..+++.+. +--+.++++++...   
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~~-~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~---   82 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHD---   82 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEET---
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEeC-CCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecC---
Confidence            456666677776665555556789998764 4456778776544444445677888877663 32245566665542   


Q ss_pred             CCCCCceEEEEEeccCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------------------------
Q 044236          512 DDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV------------------------  567 (747)
Q Consensus       512 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------------------------  567 (747)
                           +..++|||++++..+.+.....     -.   ...++.++++.++.||+..                        
T Consensus        83 -----~~~~lv~~~l~G~~~~~~~~~~-----~~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (263)
T d1j7la_          83 -----GWSNLLMSEADGVLCSEEYEDE-----QS---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNND  149 (263)
T ss_dssp             -----TEEEEEEECCSSEEHHHHTTTC-----SC---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTT
T ss_pred             -----CceEEEEEeccccccccccccc-----cc---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHH
Confidence                 3679999999987775433211     11   2233445555555555310                        


Q ss_pred             --------------------------------CCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          568 --------------------------------ISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       568 --------------------------------~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                                                      ...++|+|+.|.|||+++++..-|.||+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         150 LADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             CSCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             hhhhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                                            1226899999999999987777799999874

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.64  E-value=0.00017  Score=69.78  Aligned_cols=76  Identities=12%  Similarity=0.117  Sum_probs=50.0

Q ss_pred             cccCCCC-eeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCC--CCcceeeeeeeccCCCCCCCCceEEEEE
Q 044236          447 FMGEGSR-GKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH--PHLVSLLGHCIESGSQDDSNTNKVFLVY  523 (747)
Q Consensus       447 ~iG~G~~-g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H--~nIv~l~g~~~~~~~~~~~~~~~~~lv~  523 (747)
                      .+..|.. +.||+...+++..+.+|.-....   ...+..|...++.+..  --+.++++++.+.        +..++||
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~---~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~--------~~~~~v~   85 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEA--------GRDWLLL   85 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECS--------SCEEEEE
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccC---HhHHHHHHHHHHHHHhcCCCCCceeeecccc--------cceEEEE
Confidence            3455554 67999998888888888765332   2345677777776643  2345566665542        3679999


Q ss_pred             eccCCCCccc
Q 044236          524 EYIPNGSYRA  533 (747)
Q Consensus       524 Ey~~~gsL~~  533 (747)
                      ||+++.++.+
T Consensus        86 ~~i~G~~~~~   95 (255)
T d1nd4a_          86 GEVPGQDLLS   95 (255)
T ss_dssp             ECCSSEETTT
T ss_pred             Eeeecccccc
Confidence            9998866543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=3.1e-05  Score=70.03  Aligned_cols=89  Identities=10%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             cCCCCCCEEEeecc-CCCCC----CChhccCCCCCCEEEcccCCCCC----CCCccccCCCCCCEEEcccCCCCCCC---
Q 044236           91 TRLTTLRVLSLVSL-GIWGP----LPDKIHRLSSLELLDMSSNFLFG----AIPSGISRLVRLQTLTMDTNFFDDNV---  158 (747)
Q Consensus        91 ~~l~~L~~L~L~~n-~i~~~----~p~~~~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~~~~~~---  158 (747)
                      .+.++|+.|+|+++ .+...    +-..+...++|+.|+|++|.+..    .+...+...+.|++|+|++|.++..-   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34567777777653 34221    22345566677777777776642    22233444566677777766665321   


Q ss_pred             -cccccCCCCCCEEEccCCcCC
Q 044236          159 -PDWWDSLSNLTVLSLKSNQLK  179 (747)
Q Consensus       159 -p~~~~~l~~L~~L~l~~N~l~  179 (747)
                       -..+...+.|+.|++++|++.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence             123344556666666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.17  E-value=7.1e-05  Score=67.59  Aligned_cols=89  Identities=12%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             cCCCCCCEEEcccC-CCCCC----CCccccCCCCCCEEEcccCCCCCC----CcccccCCCCCCEEEccCCcCCCC----
Q 044236          115 HRLSSLELLDMSSN-FLFGA----IPSGISRLVRLQTLTMDTNFFDDN----VPDWWDSLSNLTVLSLKSNQLKGQ----  181 (747)
Q Consensus       115 ~~L~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~~~~~----~p~~~~~l~~L~~L~l~~N~l~~~----  181 (747)
                      .+.++|+.|+|+++ .+...    +-..+...++|++|+|++|.++..    +...+...+.|+.|+|++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35578888888864 34321    223456667788888888877532    223344556777777777777632    


Q ss_pred             CchhhcCCccCcEEecccCccc
Q 044236          182 FPSSICRIATLTDIAMSNNELS  203 (747)
Q Consensus       182 ~p~~~~~l~~L~~L~l~~N~l~  203 (747)
                      +-..+...++|+.|++++|.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence            1223445556666666666543

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.04  E-value=0.00055  Score=70.80  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=47.4

Q ss_pred             cccccCCCCeeEEEEEeC-CCcEEEEEEeecc----c---hhcHHHHHHHHHHHhcCC-C--CCcceeeeeeeccCCCCC
Q 044236          445 LSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFL----K---KYSIQNLKVRLDFLSKLQ-H--PHLVSLLGHCIESGSQDD  513 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~----~---~~~~~~~~~E~~~l~~l~-H--~nIv~l~g~~~~~~~~~~  513 (747)
                      .+.||.|....||+.... +++.|+||.-...    .   .........|.+.|+.+. +  ..+.+++++..+      
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d~~------  104 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTE------  104 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETT------
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEcCC------
Confidence            456899999999999854 4678889965321    0   112334556888877652 2  345566655432      


Q ss_pred             CCCceEEEEEeccCCCC
Q 044236          514 SNTNKVFLVYEYIPNGS  530 (747)
Q Consensus       514 ~~~~~~~lv~Ey~~~gs  530 (747)
                          ..++||||+++..
T Consensus       105 ----~~~lvmE~L~~~~  117 (392)
T d2pula1         105 ----MAVTVMEDLSHLK  117 (392)
T ss_dssp             ----TTEEEECCCTTSE
T ss_pred             ----CCEEEEeccCCcc
Confidence                3489999997644

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0019  Score=64.79  Aligned_cols=76  Identities=8%  Similarity=0.110  Sum_probs=45.1

Q ss_pred             eeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeeeeeccCCCCCCCCceEEEEEeccCCCCc
Q 044236          454 GKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY  531 (747)
Q Consensus       454 g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~gsL  531 (747)
                      -.||+++.++|+.+++|..+.. ....+++..|.+.+..|....|.-..-.....+ .........+.+++|++|..+
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~-~~~~~~~~~~~l~~~~~G~~~  111 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQ-TLLNHQGFYFAVFPSVGGRQF  111 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTB-SCEEETTEEEEEEECCCCEEC
T ss_pred             ceeEEEEcCCCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCC-eeeeeeeEEEEEEeecCCcCC
Confidence            4799999999999999987633 224566778888887764322211110111111 000113467899999976443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.35  E-value=0.00032  Score=63.04  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             cCCCCCCEEEeec-cCCCCC----CChhccCCCCCCEEEcccCCCCCC----CCccccCCCCCCEEEcccCCCCCC----
Q 044236           91 TRLTTLRVLSLVS-LGIWGP----LPDKIHRLSSLELLDMSSNFLFGA----IPSGISRLVRLQTLTMDTNFFDDN----  157 (747)
Q Consensus        91 ~~l~~L~~L~L~~-n~i~~~----~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~~~~~----  157 (747)
                      .+.+.|+.|+|++ +.|+..    +-..+...++|+.|+|++|.+...    +-..+...++|+.|++++|.++..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4456677777765 334211    223344566677777777765432    222334455666666666655432    


Q ss_pred             CcccccCCCCCCEEEc
Q 044236          158 VPDWWDSLSNLTVLSL  173 (747)
Q Consensus       158 ~p~~~~~l~~L~~L~l  173 (747)
                      +-..+...++|+.++|
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            1123344555555444

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.11  E-value=0.012  Score=60.42  Aligned_cols=73  Identities=23%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             cccccCCCCeeEEEEEeCCC--------cEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCc-ceeeeeeeccCCCCCCC
Q 044236          445 LSFMGEGSRGKLYKGRLENG--------TYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL-VSLLGHCIESGSQDDSN  515 (747)
Q Consensus       445 ~~~iG~G~~g~Vy~~~~~~g--------~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nI-v~l~g~~~~~~~~~~~~  515 (747)
                      ++.|+.|-.-.+|++..+++        +.|.+++.- . .....+..+|..+++.+.-.++ .++++++..        
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~-~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~--------  116 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-N-PETESHLVAESVIFTLLSERHLGPKLYGIFSG--------  116 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-S-CCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT--------
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-C-cchhhHHHHHHHHHHHHHhCCCCCeEEEEcCC--------
Confidence            35688888889999986542        456666543 2 2233456789888888753344 467776632        


Q ss_pred             CceEEEEEeccCCCCc
Q 044236          516 TNKVFLVYEYIPNGSY  531 (747)
Q Consensus       516 ~~~~~lv~Ey~~~gsL  531 (747)
                          .+||||+++..+
T Consensus       117 ----g~I~efi~g~~l  128 (395)
T d1nw1a_         117 ----GRLEEYIPSRPL  128 (395)
T ss_dssp             ----EEEECCCCEEEC
T ss_pred             ----ceEEEEeccccC
Confidence                689999987544

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.91  E-value=0.011  Score=58.41  Aligned_cols=166  Identities=11%  Similarity=0.077  Sum_probs=82.6

Q ss_pred             cCHHHHHHHhhCCCcccc-----ccCCCCeeEEEEEeCCCcEEEEEEeeccchhcHHHHHHHHHHHhcCCCCCcceeeee
Q 044236          430 FYLEELKEATNNFDSLSF-----MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH  504 (747)
Q Consensus       430 ~~~~~l~~~~~~f~~~~~-----iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~  504 (747)
                      .+-+|+.....+|.+.+.     |..|---+.|+.+..+|+ +++|+.....  ...++..|+++|..+...++.--.-.
T Consensus         3 ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g~-yVLri~~~~~--~~~~l~~~~~~l~~L~~~g~pvp~pi   79 (316)
T d2ppqa1           3 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDP-LILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPL   79 (316)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCC-EEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred             CCHHHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCCc-EEEEEcCCCC--CHHHHHHHHHHHHhhhhccccccccc
Confidence            456778888888876443     445666778999987776 6788775321  22344556777766543222100000


Q ss_pred             eeccCCCCCCCCceEEEEEeccCCCCccccc--------------c----cCC---CCCCC-CHHH--------------
Q 044236          505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHL--------------S----ENC---PENVL-KWSD--------------  548 (747)
Q Consensus       505 ~~~~~~~~~~~~~~~~lv~Ey~~~gsL~~~l--------------~----~~~---~~~~l-~~~~--------------  548 (747)
                      -...+.....-......++.++.+......-              +    ...   ..... .|..              
T Consensus        80 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (316)
T d2ppqa1          80 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE  159 (316)
T ss_dssp             CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred             eecCCCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcc
Confidence            0000000000123556777777664432110              0    000   00000 0100              


Q ss_pred             --HHHHHHHHHHHHHHhhc-CCCCCcccCCCCCCceeecCCCcEEEecccccc
Q 044236          549 --RLAILIGVAKAVHFLHS-SVISGSFSNRLTTNNILLDEHRIAKLSDYGISI  598 (747)
Q Consensus       549 --~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  598 (747)
                        ....+..+...+.-.+. ....++||+|+.+.||+++.+...-|.||+.+.
T Consensus       160 ~~~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         160 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hhHHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEecccccc
Confidence              01111122222222221 233579999999999999998877899999873

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.71  E-value=0.0007  Score=60.64  Aligned_cols=111  Identities=12%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             hccCCCCCCEEEccc-CCCCCC----CCccccCCCCCCEEEcccCCCCCCC----cccccCCCCCCEEEccCCcCCCC--
Q 044236          113 KIHRLSSLELLDMSS-NFLFGA----IPSGISRLVRLQTLTMDTNFFDDNV----PDWWDSLSNLTVLSLKSNQLKGQ--  181 (747)
Q Consensus       113 ~~~~L~~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~L~~N~~~~~~----p~~~~~l~~L~~L~l~~N~l~~~--  181 (747)
                      ...+.++|+.|+|++ |.++..    +-..+...++|++|+|++|.++...    -..+...+.|+.|++++|.+...  
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            345678899999987 445321    2334567788899999988876532    23345667888888888877632  


Q ss_pred             --CchhhcCCccCcEEec--ccCccccC----C-CCCCCCCcCCEEEccCC
Q 044236          182 --FPSSICRIATLTDIAM--SNNELSGK----L-PDMSALTSLHVLDLREN  223 (747)
Q Consensus       182 --~p~~~~~l~~L~~L~l--~~N~l~~~----~-p~~~~l~~L~~L~L~~N  223 (747)
                        +-..+...++|+.++|  ++|.+...    + ..+...++|+.|+++.+
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence              2244556667776554  34555321    1 11334556666666544