Citrus Sinensis ID: 044253

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MPFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEccccHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccccccEEEEcccccccHHHHHHHHHcccccEEEEEcccccccEEcccccccHHHHHHHHHHHHHcHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHEEEEEEEEEcccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHccccccccccEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MPFNLESTFFIYFIVAIDvsressetglpIIKKVEVDLKINLmesralpalDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIviydntlwggtVAMAEEQVPEILrstrqpnwnldklfassgpir
Flexible Loop (DISEMBL)
MPFNLESTFFIYFIVAIDVsressetglpIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEilrstrqpnwnldklfassgpir
Low Complexity Region (SEG)
MPFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR
Disordered region (IsUnstruct)
****LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILR******W*************
Disordered Region (DISOPRED)
MPFN*E*TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR
Disordered Region (DISEMBL)
MPFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR
Disordered Region (DISPRO)
*PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.848	0.508	0.487	1e-25
Q43161	241	Caffeoyl-CoA O-methyltran	N/A	no	0.762	0.439	0.486	6e-24
Q41720	245	Caffeoyl-CoA O-methyltran	N/A	no	0.841	0.477	0.487	3e-23
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.654	0.368	0.542	4e-23
P28034	241	Caffeoyl-CoA O-methyltran	N/A	no	0.848	0.489	0.467	2e-22
O65162	254	Caffeoyl-CoA O-methyltran	N/A	no	0.661	0.362	0.536	2e-22
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.820	0.491	0.475	3e-22
Q7F8T6	292	Tricin synthase 2 OS=Oryz	no	no	0.719	0.342	0.504	3e-22
O65862	247	Caffeoyl-CoA O-methyltran	no	no	0.654	0.368	0.531	3e-22
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.654	0.368	0.531	6e-22

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 81/121 (66%), Gaps = 3/121 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           ++AID++R+S E GLP+IKK  V+ KI+  ES ALPALD+LL ++        FD+AFVD
Sbjct: 93  VIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELLNNK---VNEGGFDFAFVD 149

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY NY E L+ L KVGGI++YDNTLWGG+VA  +   PE     ++    L+K  +
Sbjct: 150 ADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEPDSSTPEWRIEVKKATLELNKKLS 209

Query: 134 S 134
           +
Sbjct: 210 A 210

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q43161|CAMT_STELP Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 7/113 (6%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I A+D+ RE+   GL +IKK  V+ KI+ + S A+  LD LL D +   +  ++D+AFVD
Sbjct: 102 ITAVDIDREAYNVGLALIKKAGVESKISFIVSDAMTLLDDLLADGR---YQGSYDFAFVD 158

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNW 126
           A K NY NY E L+ L KVGGI+ YDNTLWGGTVA+ E +VP+ +++    NW
Sbjct: 159 ADKTNYVNYHERLIELVKVGGIIAYDNTLWGGTVALPESEVPDFMKN----NW 207

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Stellaria longipes (taxid: 19744)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q41720|CAMT_ZINEL Caffeoyl-CoA O-methyltransferase OS=Zinnia elegans GN=CCOAOMT PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 80/121 (66%), Gaps = 4/121 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D++RE+ E GLPII+K  V  KI+  E  ALP LDQ+L+DEK H    +FD+ FVD
Sbjct: 105 ILALDINRENYEIGLPIIQKAGVAHKIDFREGPALPLLDQMLQDEKCH---GSFDFIFVD 161

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGT-VAMAEEQVPEILRSTRQPNWNLDKLF 132
           A KDNY NY + L+ L K GG++ YDNTLW G+ VA A+  + + +R  R     L+K  
Sbjct: 162 ADKDNYLNYHKRLIDLVKFGGVIGYDNTLWNGSLVAPADAPLRKYVRYYRDFVLELNKAL 221

Query: 133 A 133
           A
Sbjct: 222 A 222

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Zinnia elegans (taxid: 34245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 70/94 (74%), Gaps = 3/94 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D+++E+ E GLP+IKK  VD KI+  E  ALP LD+++KDEK H    ++D+ FVD
Sbjct: 107 ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH---GSYDFIFVD 163

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
           A KDNY NY + L+ L KVGG++ YDNTLW G+V
Sbjct: 164 ADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSV 197

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P28034|CAMT_PETCR Caffeoyl-CoA O-methyltransferase OS=Petroselinum crispum PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 79/122 (64%), Gaps = 4/122 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D++RE+ E GLPII+K  V  KI+  E  ALP LD +L+D K H     FD+ FVD
Sbjct: 101 ILAMDINRENYEIGLPIIEKAGVGHKIDFREGPALPVLDHMLEDGKYH---GTFDFVFVD 157

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAM-AEEQVPEILRSTRQPNWNLDKLF 132
           A KDNY NY + L+ L K+GG++ YDNTLW G+VA  A+  + + +R  R     L+K  
Sbjct: 158 ADKDNYINYHKRLIDLVKIGGLIGYDNTLWNGSVAQPADAPMRKYVRYYRDFVIELNKAL 217

Query: 133 AS 134
           A+
Sbjct: 218 AA 219

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Petroselinum crispum (taxid: 4043)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65162|CAMT_MESCR Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 3/95 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D++RE+ E GLP+I+K  V  KI+  E  ALP LD L++D K H    +FD+AFVD
Sbjct: 114 ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIEDAKNH---GSFDFAFVD 170

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVA 108
           A KDNY NY + L+ L K+GG++ YDNTLW G+VA
Sbjct: 171 ADKDNYGNYHKRLIDLVKIGGVIGYDNTLWNGSVA 205

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 72/120 (60%), Gaps = 6/120 (5%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I AID+ +E+ E GL  IKK  VD KIN + S  L ALDQL+ D+        FD+AF D
Sbjct: 96  ITAIDIDKEAYEVGLEFIKKAGVDHKINFIHSDGLKALDQLVNDKC------EFDFAFAD 149

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K +Y N+ E L+ L KVGGI+ +DNTLW G VA  E+ VPE +R  R      +K  A
Sbjct: 150 ADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAEDEDGVPEHMREYRAALIEFNKKLA 209

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q7F8T6|OMT17_ORYSJ Tricin synthase 2 OS=Oryza sativa subsp. japonica GN=ROMT-17 PE=1 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           +VAIDVSRE  + GLP+IKK  V  K++  E  A+P LD LL +E+       FD+AFVD
Sbjct: 152 VVAIDVSREYFDLGLPVIKKAGVAHKVDFREGAAMPILDNLLANEENE---GKFDFAFVD 208

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
           A K NY  Y E L+ L + GG++ YDNTLWGG+VA+ ++ V E
Sbjct: 209 ADKGNYGEYHERLLRLVRAGGVLAYDNTLWGGSVALEDDSVLE 251

Catalyzes the stepwise methylation of tricetin to its 3'-mono- and 3',5'-dimethyl ethers. No 3',4',5'-trimethylated ester derivatives are produced. Can use caffeoyl CoA, 5-hydroxyferulic acid, luteolin, tricetin, quercetin, myrcetin and 7,8-dihydroxyflavone as substrates, but not naringenin, apigenin or kaempferol. The 2,3-double bond and the O-dihydroxyl group of the substrate are both required for catalytic activity of the enzyme.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 5

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 68/94 (72%), Gaps = 3/94 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D++RE+ E GLP+I+K  V  KI+  E  ALP LDQ+++D K H    +FD+ FVD
Sbjct: 107 ILAMDINRENYELGLPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKCH---GSFDFIFVD 163

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
           A KDNY NY + L+ L KVGG++ YDNTLW G+V
Sbjct: 164 ADKDNYINYHKRLIELVKVGGLIGYDNTLWNGSV 197

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 68/94 (72%), Gaps = 3/94 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D++RE+ E GLP+I+K  V  KI+  E  ALP LDQ+++D K H    +FD+ FVD
Sbjct: 107 ILAMDINRENYELGLPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKYH---GSFDFIFVD 163

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
           A KDNY NY + L+ L KVGG++ YDNTLW G+V
Sbjct: 164 ADKDNYINYHKRLIELVKVGGLIGYDNTLWNGSV 197

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
255546215	228	o-methyltransferase, putative [Ricinus c	0.884	0.539	0.579	8e-32
224122628	236	predicted protein [Populus trichocarpa]	0.884	0.521	0.547	7e-30
255546213	228	o-methyltransferase, putative [Ricinus c	0.884	0.539	0.555	6e-29
297738705	236	unnamed protein product [Vitis vinifera]	0.848	0.5	0.545	2e-27
225444995	282	PREDICTED: probable caffeoyl-CoA O-methy	0.848	0.418	0.545	3e-27
363807954	248	probable caffeoyl-CoA O-methyltransferas	0.841	0.471	0.55	3e-27
147799759	1625	hypothetical protein VITISV_020117 [Viti	0.848	0.072	0.545	4e-27
345500312	238	hypothetical protein [Cyclamen persicum	0.848	0.495	0.512	5e-27
356523822	230	PREDICTED: probable caffeoyl-CoA O-methy	0.841	0.508	0.541	6e-27
297738706	295	unnamed protein product [Vitis vinifera]	0.877	0.413	0.515	7e-27

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 90/126 (71%), Gaps = 3/126 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I AIDV+RE+ + GLPII+K  V+ KI+ MES ALP LD+LLKD   H    +FD+AFVD
Sbjct: 89  ITAIDVNRETYDIGLPIIRKAGVEHKIDFMESEALPVLDKLLKD---HGNEGSFDFAFVD 145

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY NY E L+ L KVGGIV+YDNTLWGGTVA+ EE+ PE +R  RQ    L+KL A
Sbjct: 146 ADKINYWNYHERLLKLLKVGGIVVYDNTLWGGTVAIPEEEAPEAMRMGRQLTIELNKLLA 205

Query: 134 SSGPIR 139
           +   I+
Sbjct: 206 ADSRIQ 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 3/126 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I AIDV+RE+ E GLPII+   V+ KIN +ES A P LD+LL+D   H    +FD+AFVD
Sbjct: 97  ITAIDVNREAYEIGLPIIRNAGVEHKINFIESEAQPILDKLLED---HGNEGSFDFAFVD 153

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY NY E LM L KVGGIV+YDNTLWGGTVA++EE  PE +++ RQ     +KL A
Sbjct: 154 ADKVNYWNYHERLMKLLKVGGIVVYDNTLWGGTVALSEESTPENMKAGRQLTIEFNKLLA 213

Query: 134 SSGPIR 139
           +   ++
Sbjct: 214 ADSRVQ 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 87/126 (69%), Gaps = 3/126 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           IVAIDV RE+ E GLPII+K  V+ KI+ MES ALP LD+LLK+   H    +FD+AFVD
Sbjct: 89  IVAIDVDREAYEIGLPIIRKAGVEHKIDFMESEALPVLDKLLKE---HGNESSFDFAFVD 145

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY NY E L+ L KVGGIVIYDN+LW G+VA+ EE+ PE LR  RQ     +K  A
Sbjct: 146 ADKINYWNYHERLLKLVKVGGIVIYDNSLWRGSVAVPEEEAPEHLRFCRQLTIEHNKFLA 205

Query: 134 SSGPIR 139
           +   ++
Sbjct: 206 ADSRVQ 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738705|emb|CBI27950.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 84/121 (69%), Gaps = 3/121 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I AIDV R++ E GLP+I+K  V+ KIN +ES+ALP LD+LL++ +    F   D+AFVD
Sbjct: 97  ITAIDVDRQAYEMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIF---DFAFVD 153

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY+NY E LM L K+GGIV+YDNTL GGTVAM EE V E LR  R+    L+   A
Sbjct: 154 ADKVNYKNYHERLMKLLKMGGIVVYDNTLRGGTVAMPEELVAENLRENRRLTIELNNFLA 213

Query: 134 S 134
           +
Sbjct: 214 A 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444995|ref|XP_002279921.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Vitis vinifera]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 84/121 (69%), Gaps = 3/121 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I AIDV R++ E GLP+I+K  V+ KIN +ES+ALP LD+LL++ +    F   D+AFVD
Sbjct: 143 ITAIDVDRQAYEMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIF---DFAFVD 199

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY+NY E LM L K+GGIV+YDNTL GGTVAM EE V E LR  R+    L+   A
Sbjct: 200 ADKVNYKNYHERLMKLLKMGGIVVYDNTLRGGTVAMPEELVAENLRENRRLTIELNNFLA 259

Query: 134 S 134
           +
Sbjct: 260 A 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807954|ref|NP_001242455.1| probable caffeoyl-CoA O-methyltransferase At4g26220-like [Glycine max] gi|323370485|gb|ADX43927.1| anthocyanin 3'-O-methyltransferase [Glycine max]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 81/120 (67%), Gaps = 3/120 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D  RE+ E GLP IKK  V+ KI+ +ES ALP LD+LL+D       E+FD+AFVD
Sbjct: 109 IIALDPDREAYEIGLPFIKKAGVEHKIDFIESPALPVLDKLLEDPSNK---ESFDFAFVD 165

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A KDNY NY E L+ L K+GG++IYDNTLWGGTVA  EE VP   R  RQ     +K  A
Sbjct: 166 ADKDNYWNYHERLLKLVKIGGLIIYDNTLWGGTVAWPEEDVPVPKRKLRQATLAFNKAIA 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 84/121 (69%), Gaps = 3/121 (2%)

Query: 14   IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
            I AIDV R++ E GLP+I+K  V+ KIN +ES+ALP LD+LL++ +    F   D+AFVD
Sbjct: 1486 ITAIDVDRQAYEMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIF---DFAFVD 1542

Query: 74   AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
            A K NY+NY E LM L K+GGIV+YDNTL GGTVAM EE V E LR  R+    L+   A
Sbjct: 1543 ADKXNYKNYHERLMKLLKMGGIVVYDNTLRGGTVAMPEELVAENLRENRRLTIELNNFLA 1602

Query: 134  S 134
            +
Sbjct: 1603 A 1603

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345500312|dbj|BAK74805.1| hypothetical protein [Cyclamen persicum x Cyclamen purpurascens]

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 85/121 (70%), Gaps = 3/121 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           IVAIDV+R++ + GLPII+K  V+ KIN +ES  LPALD+LL+D+K       FD+A++D
Sbjct: 99  IVAIDVNRKAFDIGLPIIQKAGVEHKINFIESAGLPALDKLLEDQKNE---GTFDFAYID 155

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY NY E ++ L +VGG++ YDNTLW G+VAM EE VPE  +  R+    L+K  A
Sbjct: 156 ADKANYLNYHERILKLVRVGGVIAYDNTLWNGSVAMPEECVPEFYKPGRKLTMELNKSLA 215

Query: 134 S 134
           +
Sbjct: 216 A 216

Source: Cyclamen persicum x Cyclamen purpurascens

Species: Cyclamen persicum x Cyclamen purpurascens

Genus: Cyclamen

Family: Primulaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523822|ref|XP_003530533.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Glycine max]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 3/120 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D  RE+ E GLP IKK  V+ KI+ +ES ALP LD+L++D       E+FD+AFVD
Sbjct: 91  IIALDPDREAYEIGLPFIKKAGVEHKIDFIESPALPVLDKLIEDPSNK---ESFDFAFVD 147

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A KDNY NY E L+ L K+GG++IYDNTLWGGTVA  EE VP   R  RQ     +K  A
Sbjct: 148 ADKDNYWNYHERLLKLVKIGGLIIYDNTLWGGTVAWPEEDVPAPKRKFRQAALAFNKAIA 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738706|emb|CBI27951.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 4/126 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+AIDV R++ E GLPII++  V+ KIN +ES+ALP LD+LL+D   H    + D+AFVD
Sbjct: 157 IIAIDVDRKNYEIGLPIIRRAGVEHKINFIESQALPVLDKLLED---HENEGSLDFAFVD 213

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY+NY E LM L KVGG+V+YDNTLW GTVA+ E+ V E L+  R+    L+K  A
Sbjct: 214 ADKGNYKNYHERLMKLLKVGGVVVYDNTLWHGTVALPEDLVEE-LKEMRKHIMELNKYLA 272

Query: 134 SSGPIR 139
           +   ++
Sbjct: 273 TDSRVQ 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.820	0.491	0.512	1.4e-25
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.719	0.342	0.504	4.3e-22
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.848	0.455	0.459	7e-22
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.741	0.443	0.504	2.4e-21
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.827	0.493	0.441	1e-20
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.690	0.380	0.489	3.1e-19
WB|WBGene00021487	226	comt-3 [Caenorhabditis elegans	0.805	0.495	0.347	2.7e-13
WB|WBGene00012518	217	comt-2 [Caenorhabditis elegans	0.805	0.516	0.322	3.9e-12
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.647	0.337	0.382	9.2e-12
WB|WBGene00021491	227	comt-4 [Caenorhabditis elegans	0.553	0.339	0.402	2.2e-11

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 60/117 (51%), Positives = 81/117 (69%)

Query:    14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
             ++AID++R+S E GLP+IKK  V+ KI+  ES ALPALD+LL + K++     FD+AFVD
Sbjct:    93 VIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELLNN-KVNE--GGFDFAFVD 149

Query:    74 AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDK 130
             A K NY NY E L+ L KVGGI++YDNTLWGG+VA  +   PE     ++    L+K
Sbjct:   150 ADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEPDSSTPEWRIEVKKATLELNK 206

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 52/103 (50%), Positives = 69/103 (66%)

Query:    14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
             +VAIDVSRE  + GLP+IKK  V  K++  E  A+P LD LL +E+       FD+AFVD
Sbjct:   152 VVAIDVSREYFDLGLPVIKKAGVAHKVDFREGAAMPILDNLLANEENE---GKFDFAFVD 208

Query:    74 AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
             A K NY  Y E L+ L + GG++ YDNTLWGG+VA+ ++ V E
Sbjct:   209 ADKGNYGEYHERLLRLVRAGGVLAYDNTLWGGSVALEDDSVLE 251

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 56/122 (45%), Positives = 79/122 (64%)

Query:    14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
             I+A+DV+RE+ E GLPII+K  V  KI+  E  ALP LD+++ DEK H     +D+ FVD
Sbjct:   119 ILAMDVNRENYELGLPIIEKAGVAHKIDFREGPALPVLDEIVADEKNH---GTYDFIFVD 175

Query:    74 AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV-AMAEEQVPEILRSTRQPNWNLDKLF 132
             A KDNY NY + L+ L K+GG++ YDNTLW G+V A  +  + + +R  R     L+K  
Sbjct:   176 ADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKAL 235

Query:   133 AS 134
             A+
Sbjct:   236 AA 237

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 55/109 (50%), Positives = 69/109 (63%)

Query:    14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
             I AID+ +E+ E GL  IKK  VD KIN + S  L ALDQL+ D+        FD+AF D
Sbjct:    96 ITAIDIDKEAYEVGLEFIKKAGVDHKINFIHSDGLKALDQLVNDKC------EFDFAFAD 149

Query:    74 AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTR 122
             A K +Y N+ E L+ L KVGGI+ +DNTLW G VA  E+ VPE +R  R
Sbjct:   150 ADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAEDEDGVPEHMREYR 198

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 53/120 (44%), Positives = 73/120 (60%)

Query:    14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
             I AID+ +     GL  +KK  VD KIN ++S A+  LDQLL  EK     + +D+AFVD
Sbjct:    96 ITAIDIDQAGYNLGLEFMKKAGVDHKINFIQSDAVRGLDQLLNGEK-----QEYDFAFVD 150

Query:    74 AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
             A K NY  + E L+ L KVGGI+ +DNTLW GT+   E +VP  +R+ R+     +K+ A
Sbjct:   151 ADKTNYVYFLEKLLKLVKVGGIIAFDNTLWFGTLIQKENEVPGHMRAYREALLEFNKILA 210

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/96 (48%), Positives = 61/96 (63%)

Query:    14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
             +VAID  RES E G P ++K  V  K++  E + L  LD+LL +E        FD+AFVD
Sbjct:   109 VVAIDPDRESYEIGRPFLEKAGVAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVD 168

Query:    74 AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAM 109
             A K NY  Y E L+ L +VGG ++YDNTLW GTVA+
Sbjct:   169 ADKPNYVKYHEQLLQLVRVGGHIVYDNTLWAGTVAL 204

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

WB|WBGene00021487 comt-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 42/121 (34%), Positives = 63/121 (52%)

Query:    14 IVAIDVSRES-SETGLPIIKKVEVDLK-INLMESRALPALDQLLKDEKIHFFFENFDYAF 71
             +   D+   +  + G+PII K E   K I  +E  AL  LD+L+ D +       FD+AF
Sbjct:    91 VFTFDIDHTNYKKFGVPIISKCEKTFKKIRAIEGSALDGLDKLIADGQSG----TFDFAF 146

Query:    72 VDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKL 131
             +DA K NY NY +  +TL + GG++  DN+LW G+V     +      +  Q N   DK+
Sbjct:   147 IDADKVNYSNYYDRAVTLLRKGGVIFVDNSLWNGSVCDPARRTEPSTVAIHQAN---DKI 203

Query:   132 F 132
             F
Sbjct:   204 F 204

GO:0008171 "O-methyltransferase activity" evidence=IEA

WB|WBGene00012518 comt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 39/121 (32%), Positives = 65/121 (53%)

Query:    14 IVAIDVS-RESSETGLPIIKKVEVDLK-INLMESRALPALDQLLKDEKIHFFFENFDYAF 71
             ++  D++  +  + G+PII K +   K I  +E  AL  LD+L+ D +      +FD+AF
Sbjct:    82 VLTFDINLSDYKKYGVPIISKCKKTFKKIRAIEGPALENLDKLIADGQSG----SFDFAF 137

Query:    72 VDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKL 131
             +DA K NY  Y +  +TL + GG++  DN LW G+V     +  E   +  + N   +K+
Sbjct:   138 IDADKTNYSKYYDRCVTLLRKGGVIFVDNCLWDGSVCQETTRTDESSVAIHEAN---EKI 194

Query:   132 F 132
             F
Sbjct:   195 F 195

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 161 (61.7 bits), Expect = 9.2e-12, P = 9.2e-12
 Identities = 36/94 (38%), Positives = 54/94 (57%)

Query:    14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
             ++A D++ + ++ G P+ K+  VD KI+L    A   LD+LL   +     E FD+AF+D
Sbjct:   135 VIACDINEDYAKIGKPLWKEAGVDHKIDLRIKPATQTLDELLAGGEA----ETFDFAFID 190

Query:    74 AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
             A K++Y  Y E  + L K GGI+  DN L  G V
Sbjct:   191 ADKESYNEYYEKCLRLIKKGGIIAIDNVLRCGMV 224

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00021491 comt-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query:    27 GLPIIKKVEVDLK-INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85
             G+PI+ K E   K I  +E   + +LD+L+ D +       FD+AF+DA K NY NY E 
Sbjct:   106 GVPILSKCEKTFKKIKPVEGPGVESLDKLIADGQSG----TFDFAFIDADKANYSNYYEK 161

Query:    86 LMTLFKVGGIVIYDNTLWGGTV 107
              ++L + GG++  DN+LW G V
Sbjct:   162 CVSLLRKGGVIFVDNSLWDGAV 183

GO:0008171 "O-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	3e-38
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	4e-35
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	8e-30
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	1e-12
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	1e-10

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  129 bits (325), Expect = 3e-38
 Identities = 61/121 (50%), Positives = 80/121 (66%), Gaps = 4/121 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I AID+ +E+ E GL  IKK  VD KIN ++S AL ALDQLL ++        FD+AFVD
Sbjct: 96  ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK----PEFDFAFVD 151

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY ++ E L+ L KVGGI+ +DNTLW G VA  E++VPE +R+ R+     +KL A
Sbjct: 152 ADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLA 211

Query: 134 S 134
           S
Sbjct: 212 S 212

Length = 234

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  120 bits (302), Expect = 4e-35
 Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 4/109 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I A D+  E+ E GLP I+K  V  KI+     ALP L++L+KD+        FD+ FVD
Sbjct: 72  ITACDIDPEAYEIGLPFIQKAGVADKISFRLGDALPTLEELVKDKP----LGEFDFIFVD 127

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTR 122
           A K NY NY E L+ L KVGG++  DNTLW G VA  +++VP+ +R   
Sbjct: 128 ADKSNYPNYYERLLELVKVGGLIAIDNTLWFGKVAEPDDEVPKTVRVRE 176

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  107 bits (269), Expect = 8e-30
 Identities = 50/94 (53%), Positives = 67/94 (71%), Gaps = 3/94 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D++RE+ E GLP+I+K  V  KI+  E  ALP LDQ+++D K H     FD+ FVD
Sbjct: 107 ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH---GTFDFIFVD 163

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
           A KDNY NY + L+ L KVGG++ YDNTLW G+V
Sbjct: 164 ADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSV 197

Length = 247

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFV 72
           +  I+   E +E     + +  VD +I L+    AL  L +LL          +FD  F+
Sbjct: 87  LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL--------DGSFDLVFI 138

Query: 73  DAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVA 108
           DA K +Y  Y E  + L + GG+++ DN L+GG VA
Sbjct: 139 DADKADYPEYLERALPLLRPGGLIVADNVLFGGRVA 174

Length = 219

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           +VA +    S E      +   V  K+N+    A  +L  ++++ +      ++D+AFVD
Sbjct: 146 LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGE----GSSYDFAFVD 201

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVA 108
           A K  Y++Y E L+ L +VGG+++ DN LW G VA
Sbjct: 202 ADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVA 236

Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.92
COG4122	219	Predicted O-methyltransferase [General function pr	99.91
PLN02476	278	O-methyltransferase	99.9
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.89
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.89
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.82
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.52
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.42
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.35
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.34
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.3
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.26
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.24
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.23
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.22
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.2
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.13
PRK04457	262	spermidine synthase; Provisional	99.1
COG4123	248	Predicted O-methyltransferase [General function pr	99.09
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.07
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.06
COG2520	341	Predicted methyltransferase [General function pred	99.05
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.03
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.03
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.03
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.02
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.01
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.0
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.99
PLN03075	296	nicotianamine synthase; Provisional	98.97
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.94
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.91
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.91
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.9
PRK07402	196	precorrin-6B methylase; Provisional	98.9
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.89
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.87
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.87
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.87
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.87
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.86
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.85
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.84
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.83
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.83
PRK00811	283	spermidine synthase; Provisional	98.83
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.82
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.82
PLN02823	336	spermine synthase	98.81
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.81
PRK14967	223	putative methyltransferase; Provisional	98.81
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.8
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.8
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.79
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.79
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.79
PRK01581	374	speE spermidine synthase; Validated	98.78
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.78
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.78
PLN02366	308	spermidine synthase	98.78
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.77
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.76
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.74
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.74
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.73
COG2521	287	Predicted archaeal methyltransferase [General func	98.73
PRK14968	188	putative methyltransferase; Provisional	98.72
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.71
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.69
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.68
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.68
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.68
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.68
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.68
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.66
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.66
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.66
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.66
PLN02244	340	tocopherol O-methyltransferase	98.65
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.65
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.65
PRK11207	197	tellurite resistance protein TehB; Provisional	98.65
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.64
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.64
PRK03612	521	spermidine synthase; Provisional	98.64
COG2890	280	HemK Methylase of polypeptide chain release factor	98.63
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.63
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.63
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.63
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.62
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.61
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.6
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.59
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.59
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.59
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.58
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.57
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.57
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.57
PRK12335	287	tellurite resistance protein TehB; Provisional	98.55
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.54
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.53
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.52
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.5
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.49
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.45
KOG2730	263	consensus Methylase [General function prediction o	98.44
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.43
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.42
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.4
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.39
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.37
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.37
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.34
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.33
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.31
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.31
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.3
PLN02336	475	phosphoethanolamine N-methyltransferase	98.3
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.3
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.28
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.28
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.28
PRK10742	250	putative methyltransferase; Provisional	98.26
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.25
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.24
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.24
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.23
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.22
PRK04266	226	fibrillarin; Provisional	98.2
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.2
PLN02672	1082	methionine S-methyltransferase	98.18
PRK06922	677	hypothetical protein; Provisional	98.18
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.16
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.16
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.13
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.11
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.1
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.1
PLN02336	475	phosphoethanolamine N-methyltransferase	98.1
PRK08317	241	hypothetical protein; Provisional	98.09
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.09
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.07
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.04
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.04
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.03
PRK00536	262	speE spermidine synthase; Provisional	98.03
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.03
KOG4300	252	consensus Predicted methyltransferase [General fun	98.02
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.02
PHA03412	241	putative methyltransferase; Provisional	98.0
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.0
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.0
PLN02490	340	MPBQ/MSBQ methyltransferase	97.99
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.97
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.95
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.93
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.92
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.92
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.91
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.89
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.88
KOG2904	328	consensus Predicted methyltransferase [General fun	97.87
PHA03411	279	putative methyltransferase; Provisional	97.86
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.79
TIGR03438	301	probable methyltransferase. This model represents	97.79
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.75
PTZ00146	293	fibrillarin; Provisional	97.74
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	97.74
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.72
KOG1271	227	consensus Methyltransferases [General function pre	97.7
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.7
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.66
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.59
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.56
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.54
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.53
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.52
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.45
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.45
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	97.4
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.39
COG4076	252	Predicted RNA methylase [General function predicti	97.38
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.38
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.38
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.31
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.29
PRK13699	227	putative methylase; Provisional	97.28
PRK11524	284	putative methyltransferase; Provisional	97.25
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.24
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.24
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.23
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.22
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.17
KOG2899	288	consensus Predicted methyltransferase [General fun	97.11
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.08
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.99
TIGR00438	188	rrmJ cell division protein FtsJ.	96.98
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.97
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.95
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	96.93
PRK05785	226	hypothetical protein; Provisional	96.92
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.82
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	96.77
PRK06202	232	hypothetical protein; Provisional	96.71
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.69
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.69
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.69
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.62
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.54
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.53
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.51
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.39
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.37
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.3
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.29
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.28
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	96.23
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.22
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.18
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.13
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.08
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	96.08
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	95.97
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	95.94
KOG2361	264	consensus Predicted methyltransferase [General fun	95.94
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.83
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.83
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.78
KOG3010	261	consensus Methyltransferase [General function pred	95.76
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.52
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	95.38
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.34
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	95.22
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	95.01
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.74
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	94.74
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	94.56
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.52
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	94.49
COG1568	354	Predicted methyltransferases [General function pre	94.43
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	94.32
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.13
PRK04148	134	hypothetical protein; Provisional	93.95
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	93.79
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.75
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	93.64
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.31
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	93.15
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	93.13
PF00072	112	Response_reg: Response regulator receiver domain;	92.76
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	92.12
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	92.01
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	91.87
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	91.23
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.11
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	90.66
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	90.64
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	90.59
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	90.37
KOG1227	351	consensus Putative methyltransferase [General func	90.35
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	90.08
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	89.73
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	89.5
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	89.1
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	88.67
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	87.03
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	86.57
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	86.12
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	85.94
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	85.59
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	85.55
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.35
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	85.3
COG0286	489	HsdM Type I restriction-modification system methyl	85.16
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	85.04
KOG2912	419	consensus Predicted DNA methylase [Function unknow	84.73
COG2961	279	ComJ Protein involved in catabolism of external DN	84.7
PTZ00357	1072	methyltransferase; Provisional	84.62
COG2910	211	Putative NADH-flavin reductase [General function p	84.33
COG3129	292	Predicted SAM-dependent methyltransferase [General	84.19
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	84.17
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	84.13
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	83.63
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	83.46
COG3897	218	Predicted methyltransferase [General function pred	83.11
PRK13849	231	putative crown gall tumor protein VirC1; Provision	83.02
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	82.95
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	82.95
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	82.1
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	82.0
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	81.75
KOG0780	483	consensus Signal recognition particle, subunit Srp	81.69
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	81.65
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	81.61
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	80.98
COG2130	340	Putative NADP-dependent oxidoreductases [General f	80.43

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.92  E-value=3.2e-24  Score=159.80  Aligned_cols=120  Identities=29%  Similarity=0.499  Sum_probs=105.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      .++|+++|++++..+.|+++++++|+.++|+++.||+.+.++++..+.. .+   +||+||+|+++..|..+++.+.++|
T Consensus        70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~-~~---~fD~VFiDa~K~~y~~y~~~~~~ll  145 (205)
T PF01596_consen   70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGE-EG---QFDFVFIDADKRNYLEYFEKALPLL  145 (205)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTT-TT---SEEEEEEESTGGGHHHHHHHHHHHE
T ss_pred             cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccC-CC---ceeEEEEcccccchhhHHHHHhhhc
Confidence            4689999999999999999999999999999999999999988754311 24   7999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      ++||+|++||++|+|.++.+...     ...+.+|++||+++.+||+|+
T Consensus       146 ~~ggvii~DN~l~~G~V~~~~~~-----~~~~~~ir~f~~~i~~d~~~~  189 (205)
T PF01596_consen  146 RPGGVIIADNVLWRGSVADPDDE-----DPKTVAIREFNEYIANDPRFE  189 (205)
T ss_dssp             EEEEEEEEETTTGGGGGGSTTGG-----SHHHHHHHHHHHHHHH-TTEE
T ss_pred             cCCeEEEEccccccceecCccch-----hhhHHHHHHHHHHHHhCCCee
Confidence            99999999999999999999543     456677999999999999974

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.91  E-value=1.9e-23  Score=156.52  Aligned_cols=126  Identities=26%  Similarity=0.397  Sum_probs=111.9

Q ss_pred             Cchhhhhhhc-------ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253            3 FNLESTFFIY-------FIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         3 ~~~~~~~~~~-------~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      +..+||.+++       ++|+||+++++.+.|++|+++.|+.++++++. +|+.+.+.+..     .+   +||+||+|+
T Consensus        69 ~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~-----~~---~fDliFIDa  140 (219)
T COG4122          69 AIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL-----DG---SFDLVFIDA  140 (219)
T ss_pred             ccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc-----CC---CccEEEEeC
Confidence            4556666653       69999999999999999999999999999999 69999987622     46   999999999


Q ss_pred             CCcchHHHHHHHhhcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           75 HKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        75 ~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      ++..|+.+++.+.++|+|||++++||++++|.+..+..   +..+..++++++|++++.++|+++
T Consensus       141 dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  202 (219)
T COG4122         141 DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDARTQVRGVRDFNDYLLEDPRYD  202 (219)
T ss_pred             ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHHHHHHHHHHHHHHhhCcCce
Confidence            99999999999999999999999999999999999974   345788889999999999999874

>PLN02476 O-methyltransferase

Probab=99.90  E-value=6.5e-23  Score=158.64  Aligned_cols=119  Identities=28%  Similarity=0.444  Sum_probs=105.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|.++++++.|++|++++|+.++++++.||+.+.|+++..+.. .+   +||+||+|+++..|..+++.+.++|+
T Consensus       144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~-~~---~FD~VFIDa~K~~Y~~y~e~~l~lL~  219 (278)
T PLN02476        144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGE-GS---SYDFAFVDADKRMYQDYFELLLQLVR  219 (278)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccc-CC---CCCEEEECCCHHHHHHHHHHHHHhcC
Confidence            469999999999999999999999998999999999999987632110 24   89999999999999999999999999


Q ss_pred             CCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           92 VGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        92 ~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +||+|++||++|+|.+..+...     +..+++|++||+++.+||+|+
T Consensus       220 ~GGvIV~DNvL~~G~V~d~~~~-----d~~t~~ir~fn~~v~~d~~~~  262 (278)
T PLN02476        220 VGGVIVMDNVLWHGRVADPLVN-----DAKTISIRNFNKKLMDDKRVS  262 (278)
T ss_pred             CCcEEEEecCccCCcccCcccC-----CHHHHHHHHHHHHHhhCCCEE
Confidence            9999999999999999988643     345789999999999999974

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.89  E-value=1.5e-22  Score=154.57  Aligned_cols=126  Identities=44%  Similarity=0.668  Sum_probs=106.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|.+++..+.|+++++++|+.++|+++.|++.+.|+++.......+   +||+||+|+++..|..+++.+.++|
T Consensus       104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~---~fD~iFiDadK~~Y~~y~~~~l~ll  180 (247)
T PLN02589        104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG---TFDFIFVDADKDNYINYHKRLIDLV  180 (247)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC---cccEEEecCCHHHhHHHHHHHHHhc
Confidence            4589999999999999999999999999999999999999988642100014   8999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhh-hchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILR-STRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  139 (139)
                      ++||+|++||++|+|.+..+....+++.. ...++|++||+.+.+||+|+
T Consensus       181 ~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~  230 (247)
T PLN02589        181 KVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIE  230 (247)
T ss_pred             CCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEE
Confidence            99999999999999999888533222222 23457999999999999974

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.89  E-value=1.5e-22  Score=153.60  Aligned_cols=125  Identities=49%  Similarity=0.741  Sum_probs=109.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+++++++.|++|++++|+.++++++.+|+.+.++.+..+. +.+   +||+||+|+++..|..+++.+.++|
T Consensus        93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~-~~~---~fD~VfiDa~k~~y~~~~~~~~~ll  168 (234)
T PLN02781         93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND-PKP---EFDFAFVDADKPNYVHFHEQLLKLV  168 (234)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC-CCC---CCCEEEECCCHHHHHHHHHHHHHhc
Confidence            468999999999999999999999998899999999999987763210 024   8999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +|||+++++|++|+|.+..+....+...+..+++|++||+++.+||+|+
T Consensus       169 ~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~  217 (234)
T PLN02781        169 KVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE  217 (234)
T ss_pred             CCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence            9999999999999999999875444545567899999999999999874

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=8.2e-20  Score=136.58  Aligned_cols=121  Identities=40%  Similarity=0.636  Sum_probs=107.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|++++..+++.+..+..|..++|++++|++.+.|+++..++. .+   +||++|+|+++.+|..+++.+.++|
T Consensus        98 dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~-~~---tfDfaFvDadK~nY~~y~e~~l~Ll  173 (237)
T KOG1663|consen   98 DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGE-SG---TFDFAFVDADKDNYSNYYERLLRLL  173 (237)
T ss_pred             CceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCC-CC---ceeEEEEccchHHHHHHHHHHHhhc
Confidence            5789999999999999999999999999999999999999998866532 35   8999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHH---HHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNW---NLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  139 (139)
                      ++||+|++||++|+|.++.|....    ...++.++   +||..+..|||+.
T Consensus       174 r~GGvi~~DNvl~~G~v~~p~~~~----~~~~~~~r~~~~~n~~l~~D~rV~  221 (237)
T KOG1663|consen  174 RVGGVIVVDNVLWPGVVADPDVNT----PVRGRSIREALNLNKKLARDPRVY  221 (237)
T ss_pred             ccccEEEEeccccCCcccCcccCC----CcchhhhhhhhhhhhHhccCccee
Confidence            999999999999999888775432    23677777   9999999999974

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.52  E-value=4e-14  Score=114.26  Aligned_cols=95  Identities=13%  Similarity=0.201  Sum_probs=81.7

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----   76 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----   76 (139)
                      |++.+|..++ +||+||.|..++++|++|++.+|+ .+++.++++|++++++....+   ..   +||+|++||+.    
T Consensus       231 fSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~---g~---~fDlIilDPPsF~r~  304 (393)
T COG1092         231 FSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR---GE---KFDLIILDPPSFARS  304 (393)
T ss_pred             HHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc---CC---cccEEEECCcccccC
Confidence            7889999888 999999999999999999999999 467999999999999887543   45   89999999963    


Q ss_pred             --------cchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           77 --------DNYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        77 --------~~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                              .+|.++...+.++|+|||++++.+...
T Consensus       305 k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         305 KKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             cccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence                    246677888889999999999865544

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.42  E-value=9.4e-13  Score=102.58  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=71.7

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----   76 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----   76 (139)
                      |+++++..++ +|++||.|..++++|++|++.+|+. ++++++++|+++++.++..    ..   +||+|++||+.    
T Consensus       137 fsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----~~---~fD~IIlDPPsF~k~  209 (286)
T PF10672_consen  137 FSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----GG---RFDLIILDPPSFAKS  209 (286)
T ss_dssp             HHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----TT----EEEEEE--SSEESS
T ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----CC---CCCEEEECCCCCCCC
Confidence            7788888877 6999999999999999999999985 6899999999999887543    36   89999999963    


Q ss_pred             -----cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 -----DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 -----~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                           .+|.+++..+.++|+|||.+++.
T Consensus       210 ~~~~~~~y~~L~~~a~~ll~~gG~l~~~  237 (286)
T PF10672_consen  210 KFDLERDYKKLLRRAMKLLKPGGLLLTC  237 (286)
T ss_dssp             TCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                 24677888888999999998753

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.35  E-value=5.3e-12  Score=92.65  Aligned_cols=94  Identities=22%  Similarity=0.282  Sum_probs=72.8

Q ss_pred             chhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---h
Q 044253            4 NLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---Y   79 (139)
Q Consensus         4 ~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---~   79 (139)
                      |+++..++ .+|++||.|++++...++|++..+..++++++++|+...+.+....   ..   +||+||+||++..   +
T Consensus        57 GlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~---~~---~fDiIflDPPY~~~~~~  130 (183)
T PF03602_consen   57 GLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKK---GE---KFDIIFLDPPYAKGLYY  130 (183)
T ss_dssp             HHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHC---TS----EEEEEE--STTSCHHH
T ss_pred             HHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhccc---CC---CceEEEECCCcccchHH
Confidence            56666665 5899999999999999999999999888999999999998766322   36   8999999998653   2


Q ss_pred             HHHHHHHh--hcccCCeEEEEeCCCC
Q 044253           80 RNYRETLM--TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        80 ~~~~~~~~--~lL~~gG~ii~~~~~~  103 (139)
                      ...++.+.  .+|+++|+++++...-
T Consensus       131 ~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  131 EELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            55777776  6999999999986544

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.34  E-value=5.9e-12  Score=102.18  Aligned_cols=91  Identities=19%  Similarity=0.281  Sum_probs=73.5

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----   76 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----   76 (139)
                      |+++++..++ +|++||+|+.+++.|++|++.+|+. ++++++++|+++++..+...   ..   +||+|++||+.    
T Consensus       234 ~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~---~fDlVilDPP~f~~~  307 (396)
T PRK15128        234 FAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE---KFDVIVMDPPKFVEN  307 (396)
T ss_pred             HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CC---CCCEEEECCCCCCCC
Confidence            5566555544 8999999999999999999999985 58999999999998765321   35   89999999874    


Q ss_pred             --------cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 --------DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 --------~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                              ..|..++..+.++|++||+++.-
T Consensus       308 k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~  338 (396)
T PRK15128        308 KSQLMGACRGYKDINMLAIQLLNPGGILLTF  338 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                    13566677788999999999863

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.30  E-value=7.9e-12  Score=83.42  Aligned_cols=85  Identities=18%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             hhhhh--hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcc---
Q 044253            5 LESTF--FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDN---   78 (139)
Q Consensus         5 ~~~~~--~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~---   78 (139)
                      ++.+.  .+.+|++||+|+++++.|++++...+..++++++++|+ ......      .+   +||+|++.. ....   
T Consensus        17 ~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~---~~D~v~~~~~~~~~~~~   86 (112)
T PF12847_consen   17 IALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LE---PFDLVICSGFTLHFLLP   86 (112)
T ss_dssp             HHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SS---CEEEEEECSGSGGGCCH
T ss_pred             HHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CC---CCCEEEECCCccccccc
Confidence            34444  78899999999999999999998888888999999999 332222      35   899999988 3222   


Q ss_pred             ---hHHHHHHHhhcccCCeEEEEe
Q 044253           79 ---YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ---~~~~~~~~~~lL~~gG~ii~~   99 (139)
                         ...+++.+.+.|+|||+++++
T Consensus        87 ~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   87 LDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHhcCCCcEEEEE
Confidence               235688899999999999986

...

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.26  E-value=2.3e-11  Score=81.87  Aligned_cols=86  Identities=17%  Similarity=0.266  Sum_probs=68.9

Q ss_pred             hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----
Q 044253            5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----   78 (139)
Q Consensus         5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----   78 (139)
                      +..+..+ .+++++|+|+.+++.|++|+...+..++++++++|+.+....+.     ..   +||+|+++++...     
T Consensus        16 ~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-----~~---~~D~Iv~npP~~~~~~~~   87 (117)
T PF13659_consen   16 LAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-----DG---KFDLIVTNPPYGPRSGDK   87 (117)
T ss_dssp             HHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-----TT----EEEEEE--STTSBTT--
T ss_pred             HHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-----Cc---eeEEEEECCCCccccccc
Confidence            4444455 89999999999999999999999998899999999998864442     35   8999999986432     


Q ss_pred             ------hHHHHHHHhhcccCCeEEEE
Q 044253           79 ------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ------~~~~~~~~~~lL~~gG~ii~   98 (139)
                            +..+++.+.++|++||.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   88 AALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             --GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence                  35678899999999999875

...

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.24  E-value=3.2e-11  Score=104.09  Aligned_cols=91  Identities=15%  Similarity=0.156  Sum_probs=75.9

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---   77 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---   77 (139)
                      |+++++..++ +|++||+|+.+++.|++|++.+|+. ++++++++|+.+++...      ..   +||+|++||+.-   
T Consensus       552 ~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~---~fDlIilDPP~f~~~  622 (702)
T PRK11783        552 ASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------RE---QFDLIFIDPPTFSNS  622 (702)
T ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------CC---CcCEEEECCCCCCCC
Confidence            6777787665 6999999999999999999999996 68999999999987654      35   899999998731   


Q ss_pred             -----------chHHHHHHHhhcccCCeEEEEeCCC
Q 044253           78 -----------NYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        78 -----------~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                                 .|..++..+.++|+|||++++....
T Consensus       623 ~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        623 KRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence                       3556778888999999999886543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.23  E-value=4.5e-11  Score=87.45  Aligned_cols=88  Identities=20%  Similarity=0.141  Sum_probs=77.2

Q ss_pred             hhhh--hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            5 LEST--FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         5 ~~~~--~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      ++++  -...+|+++|.++++++..++|.+++|+ ++++++.|++.+.|+.+       .   +||.||+.+. ..+..+
T Consensus        50 iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~-------~---~~daiFIGGg-~~i~~i  117 (187)
T COG2242          50 IEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDL-------P---SPDAIFIGGG-GNIEEI  117 (187)
T ss_pred             HHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCC-------C---CCCEEEECCC-CCHHHH
Confidence            4455  4467999999999999999999999996 79999999999998753       4   6999999998 789999


Q ss_pred             HHHHhhcccCCeEEEEeCCCCC
Q 044253           83 RETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                      ++.+...|++||.+|++-+...
T Consensus       118 le~~~~~l~~ggrlV~naitlE  139 (187)
T COG2242         118 LEAAWERLKPGGRLVANAITLE  139 (187)
T ss_pred             HHHHHHHcCcCCeEEEEeecHH
Confidence            9999999999999999766653

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.22  E-value=1.1e-10  Score=86.11  Aligned_cols=94  Identities=12%  Similarity=0.020  Sum_probs=74.3

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY   79 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~   79 (139)
                      |+++++.+++ +|++||.|+++++.+++|++.+++.++++++++|+.+.+..+...   ..   .||+||+||+..  .+
T Consensus        63 lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~---~~---~~dvv~~DPPy~~~~~  136 (189)
T TIGR00095        63 LGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK---PT---FDNVIYLDPPFFNGAL  136 (189)
T ss_pred             HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc---CC---CceEEEECcCCCCCcH
Confidence            5677877765 899999999999999999999999778999999998887654211   23   589999999764  34


Q ss_pred             HHHHHHHh--hcccCCeEEEEeCCC
Q 044253           80 RNYRETLM--TLFKVGGIVIYDNTL  102 (139)
Q Consensus        80 ~~~~~~~~--~lL~~gG~ii~~~~~  102 (139)
                      ...++.+.  .+|+++|+++++...
T Consensus       137 ~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       137 QALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             HHHHHHHHHCCCCCCCeEEEEEecC
Confidence            45555554  489999999997654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.20  E-value=1.2e-10  Score=85.90  Aligned_cols=82  Identities=18%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+++++++.|++|++.+|+.++++++++|+.+.++..      ..   +||+||+++....+..+++.+.+.|
T Consensus        65 ~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~---~~D~V~~~~~~~~~~~~l~~~~~~L  135 (198)
T PRK00377         65 TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NE---KFDRIFIGGGSEKLKEIISASWEII  135 (198)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CC---CCCEEEECCCcccHHHHHHHHHHHc
Confidence            36899999999999999999999997678999999998876543      35   8999999876667788999999999


Q ss_pred             cCCeEEEEeCC
Q 044253           91 KVGGIVIYDNT  101 (139)
Q Consensus        91 ~~gG~ii~~~~  101 (139)
                      +|||.++++..
T Consensus       136 kpgG~lv~~~~  146 (198)
T PRK00377        136 KKGGRIVIDAI  146 (198)
T ss_pred             CCCcEEEEEee
Confidence            99999998554

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.13  E-value=4.4e-10  Score=82.46  Aligned_cols=94  Identities=19%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             chhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chH
Q 044253            4 NLESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYR   80 (139)
Q Consensus         4 ~~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~   80 (139)
                      |+++..+ ..++++||.|.+++.++++|++..+...+.+++.+|+..+|++...    ..   +||+||+||+..  .+.
T Consensus        58 GlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~----~~---~FDlVflDPPy~~~l~~  130 (187)
T COG0742          58 GLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT----RE---PFDLVFLDPPYAKGLLD  130 (187)
T ss_pred             HHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----CC---cccEEEeCCCCccchhh
Confidence            4555555 5689999999999999999999999888999999999988877631    13   499999999865  222


Q ss_pred             HHHHHHh----hcccCCeEEEEeCCCCC
Q 044253           81 NYRETLM----TLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        81 ~~~~~~~----~lL~~gG~ii~~~~~~~  104 (139)
                      .....+.    .+|+++|.++++.-...
T Consensus       131 ~~~~~~~~~~~~~L~~~~~iv~E~~~~~  158 (187)
T COG0742         131 KELALLLLEENGWLKPGALIVVEHDKDV  158 (187)
T ss_pred             HHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence            1222222    58999999999865443

>PRK04457 spermidine synthase; Provisional

Probab=99.10  E-value=4.2e-10  Score=86.76  Aligned_cols=81  Identities=10%  Similarity=0.099  Sum_probs=67.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNY   82 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~   82 (139)
                      ...++++||+|+++++.|++++...+..++++++++|+.+++...      ..   +||+|++|....       ....+
T Consensus        89 p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~---~yD~I~~D~~~~~~~~~~l~t~ef  159 (262)
T PRK04457         89 PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------RH---STDVILVDGFDGEGIIDALCTQPF  159 (262)
T ss_pred             CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------CC---CCCEEEEeCCCCCCCccccCcHHH
Confidence            356899999999999999999876665578999999999998754      35   899999996321       12678


Q ss_pred             HHHHhhcccCCeEEEEe
Q 044253           83 RETLMTLFKVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~   99 (139)
                      ++.+.+.|+|||+++++
T Consensus       160 l~~~~~~L~pgGvlvin  176 (262)
T PRK04457        160 FDDCRNALSSDGIFVVN  176 (262)
T ss_pred             HHHHHHhcCCCcEEEEE
Confidence            99999999999999985

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.09  E-value=2.4e-10  Score=87.27  Aligned_cols=89  Identities=17%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----   77 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----   77 (139)
                      |+.|++....+++++||+++++.+.|++|++.+++.+|++++++|+..+.+...     ..   +||+|+++|+.-    
T Consensus        59 ~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~---~fD~Ii~NPPyf~~~~  130 (248)
T COG4123          59 GLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FA---SFDLIICNPPYFKQGS  130 (248)
T ss_pred             HHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----cc---ccCEEEeCCCCCCCcc
Confidence            344444444589999999999999999999999999999999999999876542     24   699999998531    


Q ss_pred             -----------------chHHHHHHHhhcccCCeEEEE
Q 044253           78 -----------------NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 -----------------~~~~~~~~~~~lL~~gG~ii~   98 (139)
                                       ...+++..+.++|++||.+.+
T Consensus       131 ~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         131 RLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             ccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence                             135678888899999999975

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.07  E-value=4.6e-10  Score=83.49  Aligned_cols=85  Identities=22%  Similarity=0.340  Sum_probs=66.6

Q ss_pred             CCchhhhh--hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            2 PFNLESTF--FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         2 ~~~~~~~~--~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      ||+|+.|.  ...+|+++|++|.+++.+++|++.+++.++++++++|+.++++        ..   .||.|+++.+... 
T Consensus       114 ~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~---~~drvim~lp~~~-  181 (200)
T PF02475_consen  114 PFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EG---KFDRVIMNLPESS-  181 (200)
T ss_dssp             TTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT----EEEEEE--TSSG-
T ss_pred             HHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------cc---ccCEEEECChHHH-
Confidence            89999998  6778999999999999999999999999999999999999875        25   8999999987543 


Q ss_pred             HHHHHHHhhcccCCeEEEE
Q 044253           80 RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~   98 (139)
                      ..+++.+..++++||++.+
T Consensus       182 ~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  182 LEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             GGGHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCcEEEC
Confidence            3588889999999999863

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.06  E-value=1.2e-09  Score=81.28  Aligned_cols=90  Identities=12%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             Cchh-hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-c-ch
Q 044253            3 FNLE-STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-D-NY   79 (139)
Q Consensus         3 ~~~~-~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~-~~   79 (139)
                      |+++ .++...+|++||+++++++.|++|++.+++. +++++++|+.+.+...      ..   +||+||+||+. . .+
T Consensus        67 l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~---~fDlV~~DPPy~~g~~  136 (199)
T PRK10909         67 LGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP------GT---PHNVVFVDPPFRKGLL  136 (199)
T ss_pred             HHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CC---CceEEEECCCCCCChH
Confidence            3454 3344579999999999999999999999974 7999999998876432      35   79999999983 2 23


Q ss_pred             HHHHHHHhh--cccCCeEEEEeCCC
Q 044253           80 RNYRETLMT--LFKVGGIVIYDNTL  102 (139)
Q Consensus        80 ~~~~~~~~~--lL~~gG~ii~~~~~  102 (139)
                      ...++.+..  +|+++|+++++...
T Consensus       137 ~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        137 EETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             HHHHHHHHHCCCcCCCcEEEEEecC
Confidence            445555554  58999999987554

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.05  E-value=8.4e-10  Score=87.81  Aligned_cols=93  Identities=19%  Similarity=0.169  Sum_probs=80.5

Q ss_pred             CCchhhhhhhcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253            2 PFNLESTFFIYF-IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus         2 ~~~~~~~~~~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~   80 (139)
                      ||+++.|..+.. |+++|+||.++..+++|++.+++.++++.++||+.+.+.++       .   .+|.|++..+.. -.
T Consensus       201 pfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~---~aDrIim~~p~~-a~  269 (341)
T COG2520         201 PFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------G---VADRIIMGLPKS-AH  269 (341)
T ss_pred             cchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------c---cCCEEEeCCCCc-ch
Confidence            899999999877 99999999999999999999999888999999999997653       4   799999987653 34


Q ss_pred             HHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           81 NYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                      .++..+...+++||++.+.......
T Consensus       270 ~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         270 EFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             hhHHHHHHHhhcCcEEEEEeccchh
Confidence            5788888999999999986665543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.03  E-value=5.5e-10  Score=87.04  Aligned_cols=80  Identities=14%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------------   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------------   77 (139)
                      ..+|+++|+|+++++.|++|++.+|+.++++++++|+.+.++        ..   +||+|+++|++.             
T Consensus       145 ~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--------~~---~fD~Iv~NPPy~~~~~~~~l~~~~~  213 (284)
T TIGR03533       145 EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--------GR---KYDLIVSNPPYVDAEDMADLPAEYH  213 (284)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------CC---CccEEEECCCCCCccchhhCCHhhh
Confidence            568999999999999999999999997789999999876532        35   799999997531             


Q ss_pred             ---------------chHHHHHHHhhcccCCeEEEEeCC
Q 044253           78 ---------------NYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        78 ---------------~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                                     .+..++..+.+.|++||+++++..
T Consensus       214 ~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       214 HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                           124456677789999999998644

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.03  E-value=1.1e-09  Score=80.22  Aligned_cols=76  Identities=14%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|.|+++++.+++++++.++. +++++++|+.+. . .      ..   +||+|++++ ..++..+++.+.++|
T Consensus        66 ~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~-~-~------~~---~fD~I~s~~-~~~~~~~~~~~~~~L  132 (181)
T TIGR00138        66 ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDF-Q-H------EE---QFDVITSRA-LASLNVLLELTLNLL  132 (181)
T ss_pred             CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhc-c-c------cC---CccEEEehh-hhCHHHHHHHHHHhc
Confidence            468999999999999999999999984 699999999875 2 1      35   899999987 456778888899999


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +|||.+++.
T Consensus       133 kpgG~lvi~  141 (181)
T TIGR00138       133 KVGGYFLAY  141 (181)
T ss_pred             CCCCEEEEE
Confidence            999999975

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.03  E-value=1.4e-09  Score=83.07  Aligned_cols=87  Identities=14%  Similarity=0.141  Sum_probs=71.0

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchH
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYR   80 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~   80 (139)
                      ++..+..+.+|+++|+|+++++.|++++...|+.++++++++|+.+.....      .+   +||+|++....   .+..
T Consensus        59 a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~---~fD~V~~~~vl~~~~~~~  129 (255)
T PRK11036         59 AIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ET---PVDLILFHAVLEWVADPK  129 (255)
T ss_pred             HHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CC---CCCEEEehhHHHhhCCHH
Confidence            345566678999999999999999999999998788999999998864322      45   89999987532   3456


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.+.++|+|||++++-
T Consensus       130 ~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        130 SVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             HHHHHHHHHcCCCeEEEEE
Confidence            7889999999999999763

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.02  E-value=1.4e-09  Score=73.37  Aligned_cols=80  Identities=18%  Similarity=0.175  Sum_probs=67.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+|+.+++.++++++..+.. +++++.+|+...+...      ..   +||+|+++.....+..+++.+.+.|
T Consensus        43 ~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~---~~D~v~~~~~~~~~~~~l~~~~~~L  112 (124)
T TIGR02469        43 NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS------LP---EPDRVFIGGSGGLLQEILEAIWRRL  112 (124)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh------cC---CCCEEEECCcchhHHHHHHHHHHHc
Confidence            468999999999999999999998875 6999999987544332      35   8999999876566778899999999


Q ss_pred             cCCeEEEEeC
Q 044253           91 KVGGIVIYDN  100 (139)
Q Consensus        91 ~~gG~ii~~~  100 (139)
                      +|||++++.-
T Consensus       113 k~gG~li~~~  122 (124)
T TIGR02469       113 RPGGRIVLNA  122 (124)
T ss_pred             CCCCEEEEEe
Confidence            9999999753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.01  E-value=1.2e-09  Score=80.53  Aligned_cols=79  Identities=15%  Similarity=0.081  Sum_probs=67.2

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ....+|+++|+|+++++.|+++++.+++.+ ++++++|+.+.. .       .+   +||+|+++.. ..+..+++.+.+
T Consensus        67 ~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~-~-------~~---~fDlV~~~~~-~~~~~~l~~~~~  133 (187)
T PRK00107         67 RPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFG-Q-------EE---KFDVVTSRAV-ASLSDLVELCLP  133 (187)
T ss_pred             CCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCC-C-------CC---CccEEEEccc-cCHHHHHHHHHH
Confidence            356799999999999999999999999854 999999998742 1       25   8999999863 467889999999


Q ss_pred             cccCCeEEEEeC
Q 044253           89 LFKVGGIVIYDN  100 (139)
Q Consensus        89 lL~~gG~ii~~~  100 (139)
                      +|+|||++++-.
T Consensus       134 ~LkpGG~lv~~~  145 (187)
T PRK00107        134 LLKPGGRFLALK  145 (187)
T ss_pred             hcCCCeEEEEEe
Confidence            999999998763

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.00  E-value=1.2e-09  Score=72.63  Aligned_cols=80  Identities=19%  Similarity=0.316  Sum_probs=50.6

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~~~lL   90 (139)
                      +++++|..+. .+.+++++++.++.+++++++++..+.++.+.     ..   +||+|++|+++  ......++.+.++|
T Consensus        25 ~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~---~~dli~iDg~H~~~~~~~dl~~~~~~l   95 (106)
T PF13578_consen   25 KLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DG---PIDLIFIDGDHSYEAVLRDLENALPRL   95 (106)
T ss_dssp             --EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H-----EEEEEEES---HHHHHHHHHHHGGGE
T ss_pred             CEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CC---CEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            7999999997 45556666667887889999999999988774     26   89999999975  33456788888999


Q ss_pred             cCCeEEEEeCC
Q 044253           91 KVGGIVIYDNT  101 (139)
Q Consensus        91 ~~gG~ii~~~~  101 (139)
                      +|||+|+++|.
T Consensus        96 ~~ggviv~dD~  106 (106)
T PF13578_consen   96 APGGVIVFDDY  106 (106)
T ss_dssp             EEEEEEEEE--
T ss_pred             CCCeEEEEeCc
Confidence            99999999874

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.99  E-value=1.6e-09  Score=85.32  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------------   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------------   77 (139)
                      ..+|+++|+|+.+++.|++|++.+++.++++++++|+.+.++        ..   +||+|+++|++-             
T Consensus       157 ~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~---~fDlIvsNPPyi~~~~~~~l~~~~~  225 (307)
T PRK11805        157 DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--------GR---RYDLIVSNPPYVDAEDMADLPAEYR  225 (307)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--------CC---CccEEEECCCCCCccchhhcCHhhc
Confidence            568999999999999999999999987789999999876542        35   799999997531             


Q ss_pred             ---------------chHHHHHHHhhcccCCeEEEEeCC
Q 044253           78 ---------------NYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        78 ---------------~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                                     .|..+++.+.++|+|||.++++..
T Consensus       226 ~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        226 HEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             cCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                           124556777789999999998633

>PLN03075 nicotianamine synthase; Provisional

Probab=98.97  E-value=1.6e-09  Score=84.78  Aligned_cols=81  Identities=10%  Similarity=0.195  Sum_probs=69.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC----CCcchHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA----HKDNYRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~----~~~~~~~~~~   84 (139)
                      ..++++++|+|+++++.||++++. .|+.++++|+.+|+.+....       ..   .||+||+++    ++..+..+++
T Consensus       148 p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~---~FDlVF~~ALi~~dk~~k~~vL~  217 (296)
T PLN03075        148 PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-------LK---EYDVVFLAALVGMDKEEKVKVIE  217 (296)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-------cC---CcCEEEEecccccccccHHHHHH
Confidence            356799999999999999999964 88888999999999885322       25   899999996    3467888999


Q ss_pred             HHhhcccCCeEEEEeC
Q 044253           85 TLMTLFKVGGIVIYDN  100 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~  100 (139)
                      .+.+.|+|||++++..
T Consensus       218 ~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        218 HLGKHMAPGALLMLRS  233 (296)
T ss_pred             HHHHhcCCCcEEEEec
Confidence            9999999999999875

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.94  E-value=4.2e-09  Score=76.88  Aligned_cols=78  Identities=13%  Similarity=0.118  Sum_probs=65.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+|+++++.|++|++.+++. +++++++|+...   +      ..   +||+|+++.....+..+++.+.+.|
T Consensus        55 ~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~------~~---~~D~v~~~~~~~~~~~~l~~~~~~L  121 (187)
T PRK08287         55 SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L------PG---KADAIFIGGSGGNLTAIIDWSLAHL  121 (187)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c------Cc---CCCEEEECCCccCHHHHHHHHHHhc
Confidence            468999999999999999999998874 699999997532   2      35   7999999876566778889999999


Q ss_pred             cCCeEEEEeCC
Q 044253           91 KVGGIVIYDNT  101 (139)
Q Consensus        91 ~~gG~ii~~~~  101 (139)
                      +|||++++...
T Consensus       122 k~gG~lv~~~~  132 (187)
T PRK08287        122 HPGGRLVLTFI  132 (187)
T ss_pred             CCCeEEEEEEe
Confidence            99999998654

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.91  E-value=3.1e-09  Score=76.75  Aligned_cols=75  Identities=17%  Similarity=0.254  Sum_probs=60.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------chHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------NYRNYR   83 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~~~~~~   83 (139)
                      .+|+++|+|+.+++.+++|++.+++.+ ++++++|..+.++        ..   +||+|+++|+..        ....++
T Consensus        56 ~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--------~~---~fD~Iv~NPP~~~~~~~~~~~~~~~i  123 (170)
T PF05175_consen   56 AKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--------DG---KFDLIVSNPPFHAGGDDGLDLLRDFI  123 (170)
T ss_dssp             EEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--------TT---CEEEEEE---SBTTSHCHHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--------cc---ceeEEEEccchhcccccchhhHHHHH
Confidence            359999999999999999999999976 9999999977543        25   899999998642        135677


Q ss_pred             HHHhhcccCCeEEEE
Q 044253           84 ETLMTLFKVGGIVIY   98 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~   98 (139)
                      +.+.++|++||.+++
T Consensus       124 ~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen  124 EQARRYLKPGGRLFL  138 (170)
T ss_dssp             HHHHHHEEEEEEEEE
T ss_pred             HHHHHhccCCCEEEE
Confidence            888899999999853

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=4.2e-09  Score=80.39  Aligned_cols=74  Identities=16%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|+.++.++.|++|++.+|+.+++++..+|+.+...        ++   .||.||+|-+  +++++++.+.+.|+
T Consensus       120 G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~---~vDav~LDmp--~PW~~le~~~~~Lk  186 (256)
T COG2519         120 GHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--------EE---DVDAVFLDLP--DPWNVLEHVSDALK  186 (256)
T ss_pred             ceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------cc---ccCEEEEcCC--ChHHHHHHHHHHhC
Confidence            68999999999999999999999998889999999998753        35   8999999985  67889999999999


Q ss_pred             CCeEEEE
Q 044253           92 VGGIVIY   98 (139)
Q Consensus        92 ~gG~ii~   98 (139)
                      |||.+++
T Consensus       187 pgg~~~~  193 (256)
T COG2519         187 PGGVVVV  193 (256)
T ss_pred             CCcEEEE
Confidence            9999986

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.90  E-value=4.8e-09  Score=79.89  Aligned_cols=83  Identities=16%  Similarity=0.122  Sum_probs=70.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      .++|+++|+|+.|++.|++.+...|..+ ++++++||... + +.     +.   +||+|.+.-.   ..++...++++.
T Consensus        75 ~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f~-----D~---sFD~vt~~fglrnv~d~~~aL~E~~  143 (238)
T COG2226          75 TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-FP-----DN---SFDAVTISFGLRNVTDIDKALKEMY  143 (238)
T ss_pred             CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-CC-----CC---ccCEEEeeehhhcCCCHHHHHHHHH
Confidence            3799999999999999999999988865 99999999886 4 43     56   9999999763   346788999999


Q ss_pred             hcccCCeEEEEeCCCCC
Q 044253           88 TLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~~  104 (139)
                      +.|+|||.+++-+....
T Consensus       144 RVlKpgG~~~vle~~~p  160 (238)
T COG2226         144 RVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             HhhcCCeEEEEEEcCCC
Confidence            99999999988766553

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.90  E-value=1.2e-08  Score=75.04  Aligned_cols=82  Identities=16%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+|+++++.+++|++..++ ++++++++|+.+.+..+      ..   .+|.|+++.. .....+++.+.++|
T Consensus        64 ~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~------~~---~~d~v~~~~~-~~~~~~l~~~~~~L  132 (196)
T PRK07402         64 KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQL------AP---APDRVCIEGG-RPIKEILQAVWQYL  132 (196)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhC------CC---CCCEEEEECC-cCHHHHHHHHHHhc
Confidence            47899999999999999999999998 47999999998765443      23   5789999875 34578899999999


Q ss_pred             cCCeEEEEeCCCC
Q 044253           91 KVGGIVIYDNTLW  103 (139)
Q Consensus        91 ~~gG~ii~~~~~~  103 (139)
                      +|||.+++.....
T Consensus       133 kpgG~li~~~~~~  145 (196)
T PRK07402        133 KPGGRLVATASSL  145 (196)
T ss_pred             CCCeEEEEEeecH
Confidence            9999999875443

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.89  E-value=1.2e-08  Score=80.45  Aligned_cols=86  Identities=9%  Similarity=0.022  Sum_probs=67.4

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      |+++.+..+.+|+++|+|+++++.|++|++.+|+ ++++++++|+.++....      ..   +||+|++||+.......
T Consensus       187 ~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~---~~D~Vv~dPPr~G~~~~  256 (315)
T PRK03522        187 FGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GE---VPDLVLVNPPRRGIGKE  256 (315)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CC---CCeEEEECCCCCCccHH
Confidence            5677777788999999999999999999999998 58999999998875432      35   79999999986654333


Q ss_pred             HHHHhhcccCCeEEEE
Q 044253           83 RETLMTLFKVGGIVIY   98 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~   98 (139)
                      +-..+..+++++++.+
T Consensus       257 ~~~~l~~~~~~~ivyv  272 (315)
T PRK03522        257 LCDYLSQMAPRFILYS  272 (315)
T ss_pred             HHHHHHHcCCCeEEEE
Confidence            3333444677877765

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.87  E-value=7.2e-09  Score=80.60  Aligned_cols=84  Identities=14%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------------   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------------   77 (139)
                      ..+|+++|+|+++++.|++|++.+++.++++++++|+.+.+.        ..   +||+|+++|+.-             
T Consensus       138 ~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--------~~---~fDlIvsNPPyi~~~~~~~~~~~~~  206 (284)
T TIGR00536       138 NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--------GQ---KIDIIVSNPPYIDEEDLADLPNVVR  206 (284)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--------CC---CccEEEECCCCCCcchhhcCCcccc
Confidence            468999999999999999999999987779999999876432        34   799999987431             


Q ss_pred             ---------------chHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           78 ---------------NYRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        78 ---------------~~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                                     .|..++..+.++|++||+++++.....+
T Consensus       207 ~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~  249 (284)
T TIGR00536       207 FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ  249 (284)
T ss_pred             cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence                           2345667777899999999987665543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.87  E-value=6.9e-09  Score=77.09  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=63.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|+++++++.|++|+..+++.++++++++|+.+.++.       ..   +||+|+++.....   +.+.+.+.|+
T Consensus        98 g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~---~fD~Ii~~~~~~~---~~~~l~~~L~  164 (205)
T PRK13944         98 GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HA---PFDAIIVTAAAST---IPSALVRQLK  164 (205)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CC---CccEEEEccCcch---hhHHHHHhcC
Confidence            589999999999999999999999877899999999765432       35   8999999986543   3356778999


Q ss_pred             CCeEEEEeCC
Q 044253           92 VGGIVIYDNT  101 (139)
Q Consensus        92 ~gG~ii~~~~  101 (139)
                      +||++++...
T Consensus       165 ~gG~lvi~~~  174 (205)
T PRK13944        165 DGGVLVIPVE  174 (205)
T ss_pred             cCcEEEEEEc
Confidence            9999988543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.87  E-value=5.1e-09  Score=73.92  Aligned_cols=82  Identities=23%  Similarity=0.299  Sum_probs=68.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      .++++++|+|+++++.|+++++..++. +++++++|+.+ ++...     .+   +||+|++.+..   .+....++.+.
T Consensus        28 ~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~---~~D~I~~~~~l~~~~~~~~~l~~~~   97 (152)
T PF13847_consen   28 GAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EE---KFDIIISNGVLHHFPDPEKVLKNII   97 (152)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----ST---TEEEEEEESTGGGTSHHHHHHHHHH
T ss_pred             CCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CC---CeeEEEEcCchhhccCHHHHHHHHH
Confidence            678999999999999999999999996 89999999998 54310     24   89999998743   33456788999


Q ss_pred             hcccCCeEEEEeCCC
Q 044253           88 TLFKVGGIVIYDNTL  102 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~  102 (139)
                      +.|+++|.+++.+..
T Consensus        98 ~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   98 RLLKPGGILIISDPN  112 (152)
T ss_dssp             HHEEEEEEEEEEEEE
T ss_pred             HHcCCCcEEEEEECC
Confidence            999999999987666

...

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.87  E-value=1.3e-08  Score=82.09  Aligned_cols=86  Identities=9%  Similarity=0.062  Sum_probs=69.4

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-HH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-RN   81 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-~~   81 (139)
                      |+++.+..+.+|++||+|+.+++.|++|++.+++. +++++++|+.+++...      ..   +||+|++||+.... ..
T Consensus       247 ~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~---~~D~vi~DPPr~G~~~~  316 (374)
T TIGR02085       247 FGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MS---APELVLVNPPRRGIGKE  316 (374)
T ss_pred             HHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CC---CCCEEEECCCCCCCcHH
Confidence            56777777889999999999999999999999984 8999999998876432      24   79999999986543 44


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      .++.+. .++|++++.+.
T Consensus       317 ~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       317 LCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             HHHHHH-hcCCCeEEEEE
Confidence            555554 47899988774

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4.4e-09  Score=78.41  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|++++.++.|++|++..|+. +++++++|.....+.       ..   +||.|++.+.....+   +.+++.|
T Consensus        94 ~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~-------~a---PyD~I~Vtaaa~~vP---~~Ll~QL  159 (209)
T COG2518          94 VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE-------EA---PYDRIIVTAAAPEVP---EALLDQL  159 (209)
T ss_pred             hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCC-------CC---CcCEEEEeeccCCCC---HHHHHhc
Confidence            348999999999999999999999995 499999999887654       46   999999998665544   3567899


Q ss_pred             cCCeEEEEeCC
Q 044253           91 KVGGIVIYDNT  101 (139)
Q Consensus        91 ~~gG~ii~~~~  101 (139)
                      ++||++++--.
T Consensus       160 ~~gGrlv~PvG  170 (209)
T COG2518         160 KPGGRLVIPVG  170 (209)
T ss_pred             ccCCEEEEEEc
Confidence            99999987533

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.85  E-value=1e-08  Score=79.64  Aligned_cols=89  Identities=15%  Similarity=0.168  Sum_probs=67.5

Q ss_pred             chhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCc
Q 044253            4 NLESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKD   77 (139)
Q Consensus         4 ~~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~   77 (139)
                      ++..+.. +++|++|.+|++..+.|++.++..|+.+++++.++|..+.          ..   +||.|+.=.     +..
T Consensus        77 ~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~---~fD~IvSi~~~Ehvg~~  143 (273)
T PF02353_consen   77 AIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------PG---KFDRIVSIEMFEHVGRK  143 (273)
T ss_dssp             HHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------------S-SEEEEESEGGGTCGG
T ss_pred             HHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------CC---CCCEEEEEechhhcChh
Confidence            3445555 8899999999999999999999999999999999998764          35   899998743     345


Q ss_pred             chHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           78 NYRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                      ++..+|+.+.++|+|||.+++..+....
T Consensus       144 ~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  144 NYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             GHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            7889999999999999999987665543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.84  E-value=8.1e-09  Score=77.11  Aligned_cols=73  Identities=19%  Similarity=0.312  Sum_probs=60.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV   92 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~   92 (139)
                      +|+++|+++++++.|++|++..|+ ++++++++|+.+.+..       ..   +||+|++++....+   .+.+.+.|++
T Consensus       104 ~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~---~fD~Ii~~~~~~~~---~~~~~~~L~~  169 (215)
T TIGR00080       104 LVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LA---PYDRIYVTAAGPKI---PEALIDQLKE  169 (215)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cC---CCCEEEEcCCcccc---cHHHHHhcCc
Confidence            599999999999999999999998 5799999999765332       35   89999999865433   4457789999


Q ss_pred             CeEEEEe
Q 044253           93 GGIVIYD   99 (139)
Q Consensus        93 gG~ii~~   99 (139)
                      ||++++.
T Consensus       170 gG~lv~~  176 (215)
T TIGR00080       170 GGILVMP  176 (215)
T ss_pred             CcEEEEE
Confidence            9999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.83  E-value=8.3e-09  Score=81.80  Aligned_cols=85  Identities=12%  Similarity=0.102  Sum_probs=69.1

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------   77 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------   77 (139)
                      .++++..+.+++++|+|++++..|++|++..|+.+ ++++++|+.+. +..      ..   +||+|++|++..      
T Consensus       197 lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l-~~~------~~---~~D~Iv~dPPyg~~~~~~  265 (329)
T TIGR01177       197 LIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL-PLS------SE---SVDAIATDPPYGRSTTAA  265 (329)
T ss_pred             HHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC-Ccc------cC---CCCEEEECCCCcCccccc
Confidence            45666778899999999999999999999999865 89999999874 221      35   899999998642      


Q ss_pred             ------chHHHHHHHhhcccCCeEEEEe
Q 044253           78 ------NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ------~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                            .+..+++.+.+.|+|||++++-
T Consensus       266 ~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       266 GDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             CCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence                  1466788888999999998763

This family is found exclusively in the Archaea.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.83  E-value=3.8e-08  Score=80.84  Aligned_cols=83  Identities=23%  Similarity=0.256  Sum_probs=66.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+|+++|+|+++++.+++|+++.|+. +++++++|+..+....      .+   +||.|++|++...            
T Consensus       262 ~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~------~~---~fD~Vl~DaPCsg~G~~~~~p~~~~  331 (431)
T PRK14903        262 QGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYV------QD---TFDRILVDAPCTSLGTARNHPEVLR  331 (431)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhh------hc---cCCEEEECCCCCCCccccCChHHHH
Confidence            468999999999999999999999985 6999999998753222      35   8999999986521            


Q ss_pred             -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 -------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                   ..++++.+.++|+|||++++.....
T Consensus       332 ~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        332 RVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                         1345677789999999999865543

>PRK00811 spermidine synthase; Provisional

Probab=98.83  E-value=2.5e-08  Score=77.73  Aligned_cols=79  Identities=15%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcC--C--CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVE--V--DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR   80 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g--~--~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~   80 (139)
                      .+|++||+|+++++.|++++...+  .  .++++++.+|+..++...      .+   +||+|++|..-.       ...
T Consensus       101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~---~yDvIi~D~~dp~~~~~~l~t~  171 (283)
T PRK00811        101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------EN---SFDVIIVDSTDPVGPAEGLFTK  171 (283)
T ss_pred             CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------CC---cccEEEECCCCCCCchhhhhHH
Confidence            579999999999999999987542  2  468999999999988652      46   899999986211       124


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.+.+.|++||++++.
T Consensus       172 ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        172 EFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             HHHHHHHHhcCCCcEEEEe
Confidence            5678888999999999974

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.82  E-value=1.7e-08  Score=80.04  Aligned_cols=89  Identities=11%  Similarity=0.011  Sum_probs=70.9

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchH
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYR   80 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~   80 (139)
                      +.+.+..+.+|++||.++++++.|+++....+...+++++++|+.+. ...      .+   +||+|++-..   ..+..
T Consensus       146 s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~------~~---~FD~Vi~~~vLeHv~d~~  215 (322)
T PLN02396        146 SEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADE------GR---KFDAVLSLEVIEHVANPA  215 (322)
T ss_pred             HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hhc------cC---CCCEEEEhhHHHhcCCHH
Confidence            45566677899999999999999999887766656899999999765 221      35   8999998542   23567


Q ss_pred             HHHHHHhhcccCCeEEEEeCCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      .+++.+.++|+|||.+++....
T Consensus       216 ~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        216 EFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             HHHHHHHHHcCCCcEEEEEECC
Confidence            7899999999999999987654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.82  E-value=2.9e-08  Score=81.29  Aligned_cols=88  Identities=17%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-hHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-YRN   81 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-~~~   81 (139)
                      |+++.+....+|+++|+|+++++.|++|++.+++ ++++++++|+.+.++.+...   ..   +||+|++|++... ...
T Consensus       306 ~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~---~~---~~D~vi~dPPr~G~~~~  378 (431)
T TIGR00479       306 FTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWA---GQ---IPDVLLLDPPRKGCAAE  378 (431)
T ss_pred             HHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhc---CC---CCCEEEECcCCCCCCHH
Confidence            5667776777999999999999999999999998 58999999999876553211   24   7999999998654 566


Q ss_pred             HHHHHhhcccCCeEEEE
Q 044253           82 YRETLMTLFKVGGIVIY   98 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~   98 (139)
                      +++.+. .+++++++.+
T Consensus       379 ~l~~l~-~l~~~~ivyv  394 (431)
T TIGR00479       379 VLRTII-ELKPERIVYV  394 (431)
T ss_pred             HHHHHH-hcCCCEEEEE
Confidence            666654 4789888766

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02823 spermine synthase

Probab=98.81  E-value=2e-08  Score=80.08  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------c-
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------N-   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~-   78 (139)
                      ..+|++||+|++.++.||+++...+  + .+|++++.+|+..++...      .+   +||+||+|....        . 
T Consensus       127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~---~yDvIi~D~~dp~~~~~~~~Ly  197 (336)
T PLN02823        127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------DE---KFDVIIGDLADPVEGGPCYQLY  197 (336)
T ss_pred             CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------CC---CccEEEecCCCccccCcchhhc
Confidence            3579999999999999999986432  2 479999999999998653      46   899999995321        1 


Q ss_pred             hHHHHH-HHhhcccCCeEEEEe
Q 044253           79 YRNYRE-TLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~~~~~~-~~~~lL~~gG~ii~~   99 (139)
                      ..++++ .+.+.|+|||++++.
T Consensus       198 t~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        198 TKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cHHHHHHHHHHhcCCCcEEEEe
Confidence            245777 788999999999874

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.81  E-value=1.8e-08  Score=81.34  Aligned_cols=86  Identities=12%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             Cchhhhhh---hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            3 FNLESTFF---IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         3 ~~~~~~~~---~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      +++..+..   ..+|+++|+|+++++.+++|++.++.. +++++++|+...+...      ..   +||+|++|| ....
T Consensus        58 rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~---~fDvIdlDP-fGs~  126 (374)
T TIGR00308        58 RAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NR---KFHVIDIDP-FGTP  126 (374)
T ss_pred             HHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CC---CCCEEEeCC-CCCc
Confidence            45666654   257999999999999999999999884 6899999999998654      35   799999999 4455


Q ss_pred             HHHHHHHhhcccCCeEEEEe
Q 044253           80 RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ..+++.+.+.+++||++.+.
T Consensus       127 ~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       127 APFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             HHHHHHHHHhcccCCEEEEE
Confidence            67999999999999999885

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK14967 putative methyltransferase; Provisional

Probab=98.81  E-value=2.3e-08  Score=75.04  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=62.3

Q ss_pred             hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------
Q 044253            6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------   78 (139)
Q Consensus         6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------   78 (139)
                      ..+..+ .+|+++|+|+++++.+++|+..+++  +++++++|+.+.++        ..   +||+|+++++...      
T Consensus        53 ~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~---~fD~Vi~npPy~~~~~~~~  119 (223)
T PRK14967         53 AAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FR---PFDVVVSNPPYVPAPPDAP  119 (223)
T ss_pred             HHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CC---CeeEEEECCCCCCCCcccc
Confidence            334333 3899999999999999999998886  48999999876532        35   8999999974221      


Q ss_pred             ------------------hHHHHHHHhhcccCCeEEEE
Q 044253           79 ------------------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ------------------~~~~~~~~~~lL~~gG~ii~   98 (139)
                                        +..+++.+.++|++||.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        120 PSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             cccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence                              23466778899999999986

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=2.1e-08  Score=82.49  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=65.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+|+++|+++++++.+++|+++.|+. +++++++|+......+      .+   +||+|++|++...            
T Consensus       275 ~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~------~~---~fD~Vl~D~Pcsg~G~~~~~p~~~~  344 (444)
T PRK14902        275 TGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKF------AE---KFDKILVDAPCSGLGVIRRKPDIKY  344 (444)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchh------cc---cCCEEEEcCCCCCCeeeccCcchhh
Confidence            468999999999999999999999985 4999999998764333      24   8999999986321            


Q ss_pred             -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 -------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                   ...+++.+.++|+|||.+++....+
T Consensus       345 ~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        345 NKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence                         1245777889999999999755443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=4.9e-08  Score=80.13  Aligned_cols=85  Identities=20%  Similarity=0.203  Sum_probs=65.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      .+|+++|+++++++.+++|++.+|+. +++++++|+..........   .+   +||.|++|++...             
T Consensus       278 g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~---~~---~fD~Vl~DaPCSg~G~~~r~p~~~~~  350 (434)
T PRK14901        278 GEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQW---RG---YFDRILLDAPCSGLGTLHRHPDARWR  350 (434)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccc---cc---cCCEEEEeCCCCcccccccCcchhhh
Confidence            58999999999999999999999995 5999999998763211000   25   7999999986421             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                  -..+++.+.++|+|||++++.....
T Consensus       351 ~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        351 QTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                        1345777889999999999765443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.79  E-value=1.3e-08  Score=76.06  Aligned_cols=74  Identities=19%  Similarity=0.283  Sum_probs=60.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|+++++++.|+++++..|+ ++++++++|+......       ..   +||+|++++....+   .+.+.+.|+
T Consensus       102 ~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~-------~~---~fD~I~~~~~~~~~---~~~l~~~Lk  167 (212)
T PRK13942        102 GKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEE-------NA---PYDRIYVTAAGPDI---PKPLIEQLK  167 (212)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCc-------CC---CcCEEEECCCcccc---hHHHHHhhC
Confidence            5899999999999999999999998 4799999998765321       35   89999998865443   346678999


Q ss_pred             CCeEEEEe
Q 044253           92 VGGIVIYD   99 (139)
Q Consensus        92 ~gG~ii~~   99 (139)
                      |||.+++.
T Consensus       168 pgG~lvi~  175 (212)
T PRK13942        168 DGGIMVIP  175 (212)
T ss_pred             CCcEEEEE
Confidence            99999875

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.79  E-value=3.7e-08  Score=81.02  Aligned_cols=89  Identities=12%  Similarity=0.099  Sum_probs=69.8

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      |++..+....+|+++|+|+++++.|++|++.+++. +++++++|+.+.+......   ..   +||+|++||+.......
T Consensus       311 ~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~~---~~---~fD~Vi~dPPr~g~~~~  383 (443)
T PRK13168        311 FTLPLARQAAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPWA---LG---GFDKVLLDPPRAGAAEV  383 (443)
T ss_pred             HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhhh---cC---CCCEEEECcCCcChHHH
Confidence            45666666789999999999999999999999984 6999999998876432100   24   79999999987766666


Q ss_pred             HHHHhhcccCCeEEEEe
Q 044253           83 RETLMTLFKVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~   99 (139)
                      ++.+.+ +++++++.+.
T Consensus       384 ~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        384 MQALAK-LGPKRIVYVS  399 (443)
T ss_pred             HHHHHh-cCCCeEEEEE
Confidence            765555 6888888764

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.79  E-value=4.1e-08  Score=75.68  Aligned_cols=80  Identities=18%  Similarity=0.207  Sum_probs=63.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      .+|+++|+++++++.+++|++.+|+. +++++++|+..+.. .      ..   +||.|++|++...             
T Consensus        97 g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-~------~~---~fD~Vl~D~Pcsg~G~~~~~p~~~~~  165 (264)
T TIGR00446        97 GAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA-A------VP---KFDAILLDAPCSGEGVIRKDPSRKKN  165 (264)
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh-h------cc---CCCEEEEcCCCCCCcccccChhhhhc
Confidence            58999999999999999999999984 69999999976522 2      35   7999999986432             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeCCC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                                  ..++++.+.++|+|||++++....
T Consensus       166 ~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       166 WSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence                        124677778899999999965443

>PRK01581 speE spermidine synthase; Validated

Probab=98.78  E-value=3.2e-08  Score=79.47  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=62.3

Q ss_pred             cceeEEeCCccHHHHHHHHH-----HHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------c
Q 044253           12 YFIVAIDVSRESSETGLPII-----KKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------N   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~-----~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~   78 (139)
                      .+|++||+|+++++.|++..     ...++ .+|++++.+|+.+++...      .+   +||+||+|.+..       .
T Consensus       175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~------~~---~YDVIIvDl~DP~~~~~~~L  245 (374)
T PRK01581        175 LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP------SS---LYDVIIIDFPDPATELLSTL  245 (374)
T ss_pred             CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc------CC---CccEEEEcCCCccccchhhh
Confidence            58999999999999999732     22233 479999999999998754      46   899999996321       1


Q ss_pred             h-HHHHHHHhhcccCCeEEEEe
Q 044253           79 Y-RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~-~~~~~~~~~lL~~gG~ii~~   99 (139)
                      | .++++.+.+.|+|||++++.
T Consensus       246 yT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        246 YTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             hHHHHHHHHHHhcCCCcEEEEe
Confidence            2 45788899999999999875

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.78  E-value=2.3e-08  Score=77.99  Aligned_cols=79  Identities=15%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|+|+.+++.|++|+..+++.+++.+..++....   .      ..   +||+|+++.....+..++..+.+.|+
T Consensus       183 ~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~------~~---~fDlVvan~~~~~l~~ll~~~~~~Lk  250 (288)
T TIGR00406       183 AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---I------EG---KADVIVANILAEVIKELYPQFSRLVK  250 (288)
T ss_pred             CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---c------CC---CceEEEEecCHHHHHHHHHHHHHHcC
Confidence            489999999999999999999999987888888773221   1      35   89999998765556678888899999


Q ss_pred             CCeEEEEeCCC
Q 044253           92 VGGIVIYDNTL  102 (139)
Q Consensus        92 ~gG~ii~~~~~  102 (139)
                      |||++++..+.
T Consensus       251 pgG~li~sgi~  261 (288)
T TIGR00406       251 PGGWLILSGIL  261 (288)
T ss_pred             CCcEEEEEeCc
Confidence            99999987654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.78  E-value=1.9e-08  Score=77.09  Aligned_cols=78  Identities=14%  Similarity=0.061  Sum_probs=60.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      +.+|+++|+|+++++.|++|++.++    ++++++|+.+.+....     ..   +||+|++||++..            
T Consensus       110 ~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~---~fDlVv~NPPy~~~~~~~~~~~e~~  177 (251)
T TIGR03704       110 GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RG---RVDILAANAPYVPTDAIALMPPEAR  177 (251)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CC---CEeEEEECCCCCCchhhhcCCHHHH
Confidence            5689999999999999999998876    3789999887654321     24   7999999986421            


Q ss_pred             -----------------hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 -----------------YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 -----------------~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                                       +..+++.+.++|++||++++..
T Consensus       178 ~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~  216 (251)
T TIGR03704       178 DHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET  216 (251)
T ss_pred             hCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                             2355666678999999999864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PLN02366 spermidine synthase

Probab=98.78  E-value=3.9e-08  Score=77.55  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=64.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRN   81 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~   81 (139)
                      .+|+.||+|+++++.||+.+...  ++ .+|++++.+|+..++....     .+   +||+|++|....       ....
T Consensus       116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----~~---~yDvIi~D~~dp~~~~~~L~t~e  187 (308)
T PLN02366        116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----EG---TYDAIIVDSSDPVGPAQELFEKP  187 (308)
T ss_pred             CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----CC---CCCEEEEcCCCCCCchhhhhHHH
Confidence            57999999999999999998653  33 4589999999999987542     25   799999997432       1346


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      +++.+.+.|+|||+++..
T Consensus       188 f~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        188 FFESVARALRPGGVVCTQ  205 (308)
T ss_pred             HHHHHHHhcCCCcEEEEC
Confidence            788899999999999864

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.77  E-value=2.5e-08  Score=75.69  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=74.0

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchH
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYR   80 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~   80 (139)
                      ..+.|+.+++||++|++++++++|+......|+.  +++.+..+.+....       ++   +||+|++--   ...+..
T Consensus        74 se~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~---~FDvV~cmEVlEHv~dp~  141 (243)
T COG2227          74 SEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GG---QFDVVTCMEVLEHVPDPE  141 (243)
T ss_pred             hHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CC---CccEEEEhhHHHccCCHH
Confidence            4567888999999999999999999999999984  88998888887542       35   999999853   344667


Q ss_pred             HHHHHHhhcccCCeEEEEeCCCCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                      .++..+.+++||||.+++..+..+
T Consensus       142 ~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         142 SFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             HHHHHHHHHcCCCcEEEEeccccC
Confidence            789999999999999999877654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.76  E-value=1.9e-08  Score=76.43  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=59.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      ..+|+++|+|++|++.|++.+...+.. +++++++|+.+. + +.     ++   +||+|++--..   .+....++++.
T Consensus        72 ~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p-~~-----d~---sfD~v~~~fglrn~~d~~~~l~E~~  140 (233)
T PF01209_consen   72 NGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-P-FP-----DN---SFDAVTCSFGLRNFPDRERALREMY  140 (233)
T ss_dssp             --EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S------TT----EEEEEEES-GGG-SSHHHHHHHHH
T ss_pred             ccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-c-CC-----CC---ceeEEEHHhhHHhhCCHHHHHHHHH
Confidence            468999999999999999999998875 899999999875 3 22     46   89999987632   35677899999


Q ss_pred             hcccCCeEEEEeCC
Q 044253           88 TLFKVGGIVIYDNT  101 (139)
Q Consensus        88 ~lL~~gG~ii~~~~  101 (139)
                      +.|+|||.+++-+.
T Consensus       141 RVLkPGG~l~ile~  154 (233)
T PF01209_consen  141 RVLKPGGRLVILEF  154 (233)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HHcCCCeEEEEeec
Confidence            99999999886443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.74  E-value=6.9e-08  Score=71.10  Aligned_cols=80  Identities=11%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------ch
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NY   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~   79 (139)
                      ..+++++|+++++++.|++++...++. +++++++|+.+.+.....    ..   ++|.|+++.+-.           ..
T Consensus        40 ~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~----~~---~~d~v~~~~pdpw~k~~h~~~r~~~  111 (194)
T TIGR00091        40 DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP----DG---SLSKVFLNFPDPWPKKRHNKRRITQ  111 (194)
T ss_pred             CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC----CC---ceeEEEEECCCcCCCCCccccccCC
Confidence            568999999999999999999999985 899999999987644321    34   799999975311           12


Q ss_pred             HHHHHHHhhcccCCeEEEE
Q 044253           80 RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~   98 (139)
                      ..+++.+.+.|+|||.+++
T Consensus       112 ~~~l~~~~r~LkpgG~l~~  130 (194)
T TIGR00091       112 PHFLKEYANVLKKGGVIHF  130 (194)
T ss_pred             HHHHHHHHHHhCCCCEEEE
Confidence            5688899999999999976

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.74  E-value=3.9e-08  Score=82.24  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------------
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------   77 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------   77 (139)
                      ..++|+++|+|+++++.|++|+..+++.++++++++|+.+.+.        ..   +||+|+++|++-            
T Consensus       161 p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~---~fDlIvsNPPYi~~~~~~~l~~~v  229 (506)
T PRK01544        161 PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQ---KFDFIVSNPPYISHSEKSEMAIET  229 (506)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CC---CccEEEECCCCCCchhhhhcCchh
Confidence            4578999999999999999999999988899999999876432        35   799999987421            


Q ss_pred             -----------------chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 -----------------NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 -----------------~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                                       .|..+++.+.++|++||.++++.
T Consensus       230 ~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        230 INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                             12335566678999999999863

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.73  E-value=8.6e-08  Score=77.10  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhh---------cccCCCceeEEEEc
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEK---------IHFFFENFDYAFVD   73 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~---------~~~~~~~fD~If~D   73 (139)
                      |+++.+....+|++||+|+.+++.|++|+..+|+. +++++++|+.++++.+.....         ...   +||+||+|
T Consensus       220 ~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~---~~D~v~lD  295 (362)
T PRK05031        220 FTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY---NFSTIFVD  295 (362)
T ss_pred             HHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCC---CCCEEEEC
Confidence            56777777779999999999999999999999984 899999999998865421100         012   58999999


Q ss_pred             CCCcc-hHHHHHHHhhcccCCeEEEE
Q 044253           74 AHKDN-YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        74 ~~~~~-~~~~~~~~~~lL~~gG~ii~   98 (139)
                      |+... ....++.+.+   +++++++
T Consensus       296 PPR~G~~~~~l~~l~~---~~~ivyv  318 (362)
T PRK05031        296 PPRAGLDDETLKLVQA---YERILYI  318 (362)
T ss_pred             CCCCCCcHHHHHHHHc---cCCEEEE
Confidence            98654 3444454443   6777665

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.73  E-value=6.5e-09  Score=78.71  Aligned_cols=87  Identities=14%  Similarity=0.178  Sum_probs=69.7

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHH-HHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPI-IKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---   77 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n-~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---   77 (139)
                      +|+++..+++ +|++||.|+..++.|+-| +...-...+++++.||+.+.++.+.     ++   +||+|+-||+.-   
T Consensus       148 tAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~---sfDaIiHDPPRfS~A  219 (287)
T COG2521         148 TAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DE---SFDAIIHDPPRFSLA  219 (287)
T ss_pred             HHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-----cc---ccceEeeCCCccchh
Confidence            5788888988 999999999999999866 2211122368999999999998874     46   899999999632   


Q ss_pred             --ch-HHHHHHHhhcccCCeEEE
Q 044253           78 --NY-RNYRETLMTLFKVGGIVI   97 (139)
Q Consensus        78 --~~-~~~~~~~~~lL~~gG~ii   97 (139)
                        -| ..+.+++.++|++||.+.
T Consensus       220 geLYseefY~El~RiLkrgGrlF  242 (287)
T COG2521         220 GELYSEEFYRELYRILKRGGRLF  242 (287)
T ss_pred             hhHhHHHHHHHHHHHcCcCCcEE
Confidence              23 467888999999999987

>PRK14968 putative methyltransferase; Provisional

Probab=98.72  E-value=6.2e-08  Score=69.95  Aligned_cols=83  Identities=12%  Similarity=0.111  Sum_probs=64.5

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCc-EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLK-INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------   78 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~-i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------   78 (139)
                      ..+..+.+++++|+|+++++.+++++...+..++ +.++++|..+.+.        ..   +||+|+++++...      
T Consensus        40 ~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~---~~d~vi~n~p~~~~~~~~~  108 (188)
T PRK14968         40 VAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--------GD---KFDVILFNPPYLPTEEEEE  108 (188)
T ss_pred             HHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--------cc---CceEEEECCCcCCCCchhh
Confidence            3444578999999999999999999998887544 8999999866432        34   7999999865311      


Q ss_pred             ------------------hHHHHHHHhhcccCCeEEEEe
Q 044253           79 ------------------YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ------------------~~~~~~~~~~lL~~gG~ii~~   99 (139)
                                        +..+++.+.+.|+|||.+++-
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968        109 WDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             hhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                              244678888999999998763

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.71  E-value=9.9e-08  Score=70.78  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCC---c--------c
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHK---D--------N   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~---~--------~   78 (139)
                      ..+|++||+|+++++.|++++...+. .+++++++|+.+.+.. +.     ..   +||.|++....   .        .
T Consensus        64 ~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~-----~~---~~D~V~~~~~~p~~~~~~~~~~~~  134 (202)
T PRK00121         64 DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFP-----DG---SLDRIYLNFPDPWPKKRHHKRRLV  134 (202)
T ss_pred             CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcC-----cc---ccceEEEECCCCCCCccccccccC
Confidence            46899999999999999999998887 5799999999444442 21     35   89999985321   1        1


Q ss_pred             hHHHHHHHhhcccCCeEEEEe
Q 044253           79 YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ...+++.+.+.|+|||++++.
T Consensus       135 ~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        135 QPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             CHHHHHHHHHHcCCCCEEEEE
Confidence            467889999999999999873

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.69  E-value=8.7e-08  Score=77.65  Aligned_cols=85  Identities=12%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             Cchhhhhhh--cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253            3 FNLESTFFI--YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus         3 ~~~~~~~~~--~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~   80 (139)
                      |++..+...  .+|+++|+|+++++.+++|++.+++. +++++++|+..++..       ..   +||+|++||. ....
T Consensus        71 ~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~---~fD~V~lDP~-Gs~~  138 (382)
T PRK04338         71 RGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ER---KFDVVDIDPF-GSPA  138 (382)
T ss_pred             HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cC---CCCEEEECCC-CCcH
Confidence            456655443  38999999999999999999999985 578999999887653       14   7999999996 3456


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.+...+++||++.+.
T Consensus       139 ~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        139 PFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             HHHHHHHHHhcCCCEEEEE
Confidence            7888878889999999885

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.68  E-value=1e-07  Score=71.94  Aligned_cols=78  Identities=19%  Similarity=0.247  Sum_probs=63.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+++++|+|+.+++.|++++...++. +++++++|+.+.+.        .+   +||+|+++++...            
T Consensus       111 ~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~~---~fD~Vi~npPy~~~~~~~~~~~~~~  178 (251)
T TIGR03534       111 DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP--------GG---KFDLIVSNPPYIPEADIHLLDPEVR  178 (251)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc--------CC---ceeEEEECCCCCchhhhhhcChhhh
Confidence            568999999999999999999999884 79999999876432        35   8999999875321            


Q ss_pred             -----------------hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 -----------------YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 -----------------~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                                       +..+++.+.+.|++||.+++..
T Consensus       179 ~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       179 FHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             hcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence                             1245677788999999999853

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.68  E-value=3.3e-08  Score=74.02  Aligned_cols=74  Identities=18%  Similarity=0.263  Sum_probs=59.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|++||++++.++.|+++++..+.. +++++++|....++.       ..   +||.|++.+.....+   ..+.++|+
T Consensus        98 g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~-------~a---pfD~I~v~~a~~~ip---~~l~~qL~  163 (209)
T PF01135_consen   98 GRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPE-------EA---PFDRIIVTAAVPEIP---EALLEQLK  163 (209)
T ss_dssp             EEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGG-------G----SEEEEEESSBBSS-----HHHHHTEE
T ss_pred             ceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcccc-------CC---CcCEEEEeeccchHH---HHHHHhcC
Confidence            36899999999999999999999984 899999998876543       36   899999998665443   35678899


Q ss_pred             CCeEEEEe
Q 044253           92 VGGIVIYD   99 (139)
Q Consensus        92 ~gG~ii~~   99 (139)
                      +||++++-
T Consensus       164 ~gGrLV~p  171 (209)
T PF01135_consen  164 PGGRLVAP  171 (209)
T ss_dssp             EEEEEEEE
T ss_pred             CCcEEEEE
Confidence            99999974

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00417 speE spermidine synthase

Probab=98.68  E-value=1.4e-07  Score=72.92  Aligned_cols=80  Identities=16%  Similarity=0.265  Sum_probs=64.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c--hH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N--YR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~--~~   80 (139)
                      ..+++++|+|+++++.|++++...+  + ..+++++.+|+.+++.+.      .+   +||+|++|....     .  ..
T Consensus        96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~---~yDvIi~D~~~~~~~~~~l~~~  166 (270)
T TIGR00417        96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------EN---TFDVIIVDSTDPVGPAETLFTK  166 (270)
T ss_pred             cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------CC---CccEEEEeCCCCCCcccchhHH
Confidence            3579999999999999999986542  2 357999999999998764      36   899999997421     1  35


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.+.++|+|||++++.
T Consensus       167 ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       167 EFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             HHHHHHHHHhCCCcEEEEc
Confidence            6778889999999999975

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.68  E-value=7.2e-08  Score=69.91  Aligned_cols=81  Identities=14%  Similarity=0.075  Sum_probs=62.8

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------   77 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------   77 (139)
                      ..+..+.+|+++|+|+++++.+++|++.++.  +++++++|+.+..         ..   +||+|+++++..        
T Consensus        36 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~---~fD~Vi~n~p~~~~~~~~~~  101 (179)
T TIGR00537        36 RLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---------RG---KFDVILFNPPYLPLEDDLRR  101 (179)
T ss_pred             HHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---------CC---cccEEEECCCCCCCcchhcc
Confidence            3344445899999999999999999998876  4899999986642         35   899999987531        


Q ss_pred             ----------------chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 ----------------NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 ----------------~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                                      .+..+++.+.++|+|||.+++-.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537       102 GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence                            03456788889999999988743

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.68  E-value=7.6e-08  Score=73.67  Aligned_cols=81  Identities=14%  Similarity=0.200  Sum_probs=64.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCC---CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEV---DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRN   81 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~---~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~   81 (139)
                      .+|++||+|+..++.|++.+.....   .+|++++.+|+..++++..     +.   +||+|++|..-+       .-.+
T Consensus       101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~-----~~---~yDvIi~D~~dp~~~~~~l~t~e  172 (246)
T PF01564_consen  101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ-----EE---KYDVIIVDLTDPDGPAPNLFTRE  172 (246)
T ss_dssp             SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS-----ST----EEEEEEESSSTTSCGGGGSSHH
T ss_pred             ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc-----CC---cccEEEEeCCCCCCCcccccCHH
Confidence            5799999999999999999875432   4799999999999998753     33   699999997421       1367


Q ss_pred             HHHHHhhcccCCeEEEEeC
Q 044253           82 YRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~  100 (139)
                      +++.+.+.|++||++++..
T Consensus       173 f~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  173 FYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             HHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhhcCCCcEEEEEc
Confidence            8899999999999999754

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=3.9e-08  Score=77.08  Aligned_cols=90  Identities=16%  Similarity=0.165  Sum_probs=68.0

Q ss_pred             Cchhhhhhhcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH
Q 044253            3 FNLESTFFIYF-IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN   81 (139)
Q Consensus         3 ~~~~~~~~~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~   81 (139)
                      +++++++-++. |+++|+|+.+++.|++|++.+++...++....+......        ..   +||+|+.+--..-...
T Consensus       176 LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--------~~---~~DvIVANILA~vl~~  244 (300)
T COG2264         176 LAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--------NG---PFDVIVANILAEVLVE  244 (300)
T ss_pred             HHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--------cC---cccEEEehhhHHHHHH
Confidence            35677777664 999999999999999999999996534444443333321        35   8999999875444556


Q ss_pred             HHHHHhhcccCCeEEEEeCCCC
Q 044253           82 YRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.+..+|+|||++++..++-
T Consensus       245 La~~~~~~lkpgg~lIlSGIl~  266 (300)
T COG2264         245 LAPDIKRLLKPGGRLILSGILE  266 (300)
T ss_pred             HHHHHHHHcCCCceEEEEeehH
Confidence            7778889999999999887654

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.66  E-value=1.1e-07  Score=74.11  Aligned_cols=79  Identities=15%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-c------hHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-N------YRN   81 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~------~~~   81 (139)
                      .+++.||+|++.++.+|+.+....  . .+|++++.+|+.++++..      ..   +||+|++|..-. .      -..
T Consensus       101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~---~fDvIi~D~tdp~gp~~~Lft~e  171 (282)
T COG0421         101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EE---KFDVIIVDSTDPVGPAEALFTEE  171 (282)
T ss_pred             ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------CC---cCCEEEEcCCCCCCcccccCCHH
Confidence            579999999999999999987543  3 479999999999999875      35   799999996321 2      267


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      +++.+.+.|+++|+++..
T Consensus       172 Fy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         172 FYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             HHHHHHHhcCCCcEEEEe
Confidence            899999999999999986

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=1.2e-07  Score=77.88  Aligned_cols=87  Identities=16%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH-H
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR-N   81 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~   81 (139)
                      |+|+.|.+..+|+++|+++++++.|++|++.+|+.+ +++..+++.++......    ..   .+|.|++||+..... .
T Consensus       307 f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~----~~---~~d~VvvDPPR~G~~~~  378 (432)
T COG2265         307 FGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWE----GY---KPDVVVVDPPRAGADRE  378 (432)
T ss_pred             hhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccc----cC---CCCEEEECCCCCCCCHH
Confidence            889999999999999999999999999999999964 99999999999876521    24   799999999866554 5


Q ss_pred             HHHHHhhcccCCeEEEE
Q 044253           82 YRETLMTLFKVGGIVIY   98 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~   98 (139)
                      +++.+ ..++|..++.+
T Consensus       379 ~lk~l-~~~~p~~IvYV  394 (432)
T COG2265         379 VLKQL-AKLKPKRIVYV  394 (432)
T ss_pred             HHHHH-HhcCCCcEEEE
Confidence            55555 44566666655

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.66  E-value=1.1e-07  Score=74.00  Aligned_cols=88  Identities=15%  Similarity=0.123  Sum_probs=74.8

Q ss_pred             hhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcc
Q 044253            5 LESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDN   78 (139)
Q Consensus         5 ~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~   78 (139)
                      +.+|.. +.+|+++++|+++.+.+++.+...|+.++++++..|..++          .+   +||.|+.=+     ...+
T Consensus        88 ~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----------~e---~fDrIvSvgmfEhvg~~~  154 (283)
T COG2230          88 IYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----------EE---PFDRIVSVGMFEHVGKEN  154 (283)
T ss_pred             HHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----------cc---ccceeeehhhHHHhCccc
Confidence            344444 7899999999999999999999999988999999999876          46   799999754     4567


Q ss_pred             hHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           79 YRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                      |..+|+.+.+.|+|||.++...+....
T Consensus       155 ~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         155 YDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence            899999999999999999987665543

>PLN02244 tocopherol O-methyltransferase

Probab=98.65  E-value=7e-08  Score=76.92  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=66.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +.+|++||+|+.+++.|+++.+..|+.++++++++|+.+. + +.     ++   +||+|++...   ..+...++..+.
T Consensus       141 g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~~-----~~---~FD~V~s~~~~~h~~d~~~~l~e~~  210 (340)
T PLN02244        141 GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-FE-----DG---QFDLVWSMESGEHMPDKRKFVQELA  210 (340)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-CC-----CC---CccEEEECCchhccCCHHHHHHHHH
Confidence            6799999999999999999999999878899999999764 2 21     35   8999998542   234567889999


Q ss_pred             hcccCCeEEEEeCC
Q 044253           88 TLFKVGGIVIYDNT  101 (139)
Q Consensus        88 ~lL~~gG~ii~~~~  101 (139)
                      ++|+|||.+++.+.
T Consensus       211 rvLkpGG~lvi~~~  224 (340)
T PLN02244        211 RVAAPGGRIIIVTW  224 (340)
T ss_pred             HHcCCCcEEEEEEe
Confidence            99999999988543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.65  E-value=1.7e-07  Score=76.81  Aligned_cols=85  Identities=16%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      .++|+++|+++++++.+++|+++.|+..++++..+|+........     ..   +||.|++|++...            
T Consensus       262 ~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~-----~~---~fD~VllDaPcSg~G~~~~~p~~~~  333 (426)
T TIGR00563       262 QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE-----NE---QFDRILLDAPCSATGVIRRHPDIKW  333 (426)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc-----cc---ccCEEEEcCCCCCCcccccCcchhh
Confidence            368999999999999999999999986445557777654321111     35   7999999975331            


Q ss_pred             -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 -------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                   ...+++.+.++|+|||.+++....+
T Consensus       334 ~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       334 LRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                         1346777888999999999865544

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.65  E-value=6.3e-08  Score=72.00  Aligned_cols=76  Identities=13%  Similarity=0.201  Sum_probs=61.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+++++++.|+++++..++. +++++++|+.+.+..       ..   +||+|+++.....+   .+.+.+.|
T Consensus       100 ~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~---~fD~I~~~~~~~~~---~~~l~~~L  165 (212)
T PRK00312        100 VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPA-------YA---PFDRILVTAAAPEI---PRALLEQL  165 (212)
T ss_pred             hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCc-------CC---CcCEEEEccCchhh---hHHHHHhc
Confidence            358999999999999999999999985 599999998654321       25   89999999865433   45677899


Q ss_pred             cCCeEEEEeC
Q 044253           91 KVGGIVIYDN  100 (139)
Q Consensus        91 ~~gG~ii~~~  100 (139)
                      +|||.+++.-
T Consensus       166 ~~gG~lv~~~  175 (212)
T PRK00312        166 KEGGILVAPV  175 (212)
T ss_pred             CCCcEEEEEE
Confidence            9999998753

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.65  E-value=9e-08  Score=70.69  Aligned_cols=83  Identities=12%  Similarity=0.033  Sum_probs=64.3

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cc
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DN   78 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~   78 (139)
                      ++..+..+.+|+++|+|+++++.+++++...++. +++++++|+.+.  .+      ..   +||+|++-...     ..
T Consensus        45 a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~---~fD~I~~~~~~~~~~~~~  112 (197)
T PRK11207         45 SLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DG---EYDFILSTVVLMFLEAKT  112 (197)
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CC---CcCEEEEecchhhCCHHH
Confidence            3445556789999999999999999999988884 689999998654  12      35   89999976432     13


Q ss_pred             hHHHHHHHhhcccCCeEEEE
Q 044253           79 YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~   98 (139)
                      ...++..+.++|+|||.+++
T Consensus       113 ~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        113 IPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             HHHHHHHHHHHcCCCcEEEE
Confidence            45788889999999999544

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.64  E-value=1.1e-07  Score=78.26  Aligned_cols=81  Identities=19%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+|+++|+|+++++.+++|++..|+. +++++++|+....+        ..   +||+|++|++...            
T Consensus       275 ~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~--------~~---~fD~Vl~D~Pcsg~g~~~r~p~~~~  342 (445)
T PRK14904        275 RGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP--------EE---QPDAILLDAPCTGTGVLGRRAELRW  342 (445)
T ss_pred             CcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc--------CC---CCCEEEEcCCCCCcchhhcCcchhh
Confidence            358999999999999999999999984 79999999987531        35   8999999975421            


Q ss_pred             -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 -------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                   ...++..+.+.|+|||++++.....
T Consensus       343 ~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        343 KLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                         1235777788999999999855443

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.64  E-value=1.4e-07  Score=77.38  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      .+|+++|+|+++++.+++|++.+|+.  ++++++|+.+......     ..   +||.|++|++...             
T Consensus       269 ~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~-----~~---~fD~Vl~D~Pcs~~G~~~~~p~~~~~  338 (427)
T PRK10901        269 AQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWD-----GQ---PFDRILLDAPCSATGVIRRHPDIKWL  338 (427)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcc-----cC---CCCEEEECCCCCcccccccCcccccc
Confidence            58999999999999999999999974  7899999986422111     35   7999999986431             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeCC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                                  ...+++.+.++|+|||++++...
T Consensus       339 ~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        339 RRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence                        12467778889999999997654

>PRK03612 spermidine synthase; Provisional

Probab=98.64  E-value=7.9e-08  Score=80.68  Aligned_cols=80  Identities=15%  Similarity=0.245  Sum_probs=62.8

Q ss_pred             cceeEEeCCccHHHHHHHHH--HHc---CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------
Q 044253           12 YFIVAIDVSRESSETGLPII--KKV---EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~--~~~---g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------   78 (139)
                      .+|++||+|+++++.+|++.  ...   .+ .++++++.+|+.+++...      .+   +||+|++|.+...       
T Consensus       322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~------~~---~fDvIi~D~~~~~~~~~~~L  392 (521)
T PRK03612        322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL------AE---KFDVIIVDLPDPSNPALGKL  392 (521)
T ss_pred             CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC------CC---CCCEEEEeCCCCCCcchhcc
Confidence            68999999999999999953  221   23 358999999999988654      36   8999999974321       


Q ss_pred             -hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 -YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 -~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                       ..++++.+.++|+|||++++..
T Consensus       393 ~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        393 YSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             chHHHHHHHHHhcCCCeEEEEec
Confidence             2357888999999999999754

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.4e-07  Score=73.43  Aligned_cols=82  Identities=18%  Similarity=0.256  Sum_probs=64.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------------   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------------   77 (139)
                      .++|+++|+|+++++.|++|+..+|+ .++.++.+|.++.+         .+   +||+|+++|++-             
T Consensus       134 ~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~---------~~---~fDlIVsNPPYip~~~~~~~~~~~~  200 (280)
T COG2890         134 DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL---------RG---KFDLIVSNPPYIPAEDPELLPEVVR  200 (280)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc---------CC---ceeEEEeCCCCCCCcccccChhhhc
Confidence            45899999999999999999999999 67777777776654         35   899999987531             


Q ss_pred             ---------------chHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           78 ---------------NYRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        78 ---------------~~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                                     .+..++..+...|++||+++++.....+
T Consensus       201 ~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~  243 (280)
T COG2890         201 YEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG  243 (280)
T ss_pred             cCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH
Confidence                           1344566677899999999987665543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.63  E-value=6.1e-08  Score=69.94  Aligned_cols=63  Identities=19%  Similarity=0.148  Sum_probs=44.7

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      -|+...+|++||+|+..++.|+.|++-.|+.++++++++|+.+.++.+..    ..   .||+||++|+.
T Consensus        17 FA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~---~~D~vFlSPPW   79 (163)
T PF09445_consen   17 FARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NK---IFDVVFLSPPW   79 (163)
T ss_dssp             HHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------------SEEEE---B
T ss_pred             HHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cc---cccEEEECCCC
Confidence            34456789999999999999999999999999999999999998765421    12   28999999864

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.63  E-value=1.5e-07  Score=72.39  Aligned_cols=83  Identities=10%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~   88 (139)
                      .+|+++|+++++++.|+++....++ ++++++.+|+.+. + +.     ++   +||+|+.+..   ..+....++.+.+
T Consensus       103 ~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l-~-~~-----~~---~fD~Vi~~~v~~~~~d~~~~l~~~~r  171 (272)
T PRK11873        103 GKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEAL-P-VA-----DN---SVDVIISNCVINLSPDKERVFKEAFR  171 (272)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhC-C-CC-----CC---ceeEEEEcCcccCCCCHHHHHHHHHH
Confidence            4699999999999999999999888 4899999998653 2 21     35   8999998763   2245678999999


Q ss_pred             cccCCeEEEEeCCCCCc
Q 044253           89 LFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        89 lL~~gG~ii~~~~~~~~  105 (139)
                      +|+|||++++.++...+
T Consensus       172 ~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        172 VLKPGGRFAISDVVLRG  188 (272)
T ss_pred             HcCCCcEEEEEEeeccC
Confidence            99999999987765443

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.63  E-value=2.5e-08  Score=63.78  Aligned_cols=74  Identities=18%  Similarity=0.222  Sum_probs=57.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      ..+++++|+++++++.++++....+    +.++++|+... + +.     ++   +||+|++....   .+...+++.+.
T Consensus        19 ~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l-~-~~-----~~---sfD~v~~~~~~~~~~~~~~~l~e~~   84 (95)
T PF08241_consen   19 GASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDL-P-FP-----DN---SFDVVFSNSVLHHLEDPEAALREIY   84 (95)
T ss_dssp             TCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSS-S-S------TT----EEEEEEESHGGGSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhC-c-cc-----cc---cccccccccceeeccCHHHHHHHHH
Confidence            6789999999999999999876443    55999998776 2 22     46   89999987532   45677899999


Q ss_pred             hcccCCeEEEE
Q 044253           88 TLFKVGGIVIY   98 (139)
Q Consensus        88 ~lL~~gG~ii~   98 (139)
                      +.|||||++++
T Consensus        85 rvLk~gG~l~~   95 (95)
T PF08241_consen   85 RVLKPGGRLVI   95 (95)
T ss_dssp             HHEEEEEEEEE
T ss_pred             HHcCcCeEEeC
Confidence            99999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.62  E-value=1.2e-07  Score=77.52  Aligned_cols=81  Identities=12%  Similarity=0.089  Sum_probs=62.0

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------------
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------   77 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------   77 (139)
                      ...+|+++|+|+++++.|++|++.++.  +++++++|..+.....      ..   +||+|+++|+.-            
T Consensus       274 p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~------~~---~FDLIVSNPPYI~~~e~~l~~~~v  342 (423)
T PRK14966        274 PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPS------EG---KWDIIVSNPPYIENGDKHLLQGDL  342 (423)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccccc------CC---CccEEEECCCCCCcchhhhcchhh
Confidence            467899999999999999999998875  7999999987642111      35   799999998641            


Q ss_pred             ----------------chHHHHHHHhhcccCCeEEEEeCC
Q 044253           78 ----------------NYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        78 ----------------~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                                      .|..+++.+.++|+|||.++++..
T Consensus       343 ~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG  382 (423)
T PRK14966        343 RFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG  382 (423)
T ss_pred             hcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence                            123455566679999999987543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.61  E-value=1.6e-07  Score=75.99  Aligned_cols=78  Identities=13%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCC--CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------hH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVD--LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------YR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~--~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------~~   80 (139)
                      ..+|+++|+|+.+++.|++|++.++..  ++++++.+|+.+.+.        ..   +||+|+++|+...        ..
T Consensus       252 ~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~---~fDlIlsNPPfh~~~~~~~~ia~  320 (378)
T PRK15001        252 QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PF---RFNAVLCNPPFHQQHALTDNVAW  320 (378)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CC---CEEEEEECcCcccCccCCHHHHH
Confidence            578999999999999999999988753  378999999865431        35   8999999987421        24


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .++..+.+.|++||.+++-
T Consensus       321 ~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        321 EMFHHARRCLKINGELYIV  339 (378)
T ss_pred             HHHHHHHHhcccCCEEEEE
Confidence            5677888999999998775

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.60  E-value=1.5e-07  Score=70.50  Aligned_cols=79  Identities=18%  Similarity=0.282  Sum_probs=64.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      ..+|+++|+++++++.|++++...+. ++++++++|+... + +.     .+   +||+|++...   ..++...++.+.
T Consensus        70 ~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~~-----~~---~fD~V~~~~~l~~~~~~~~~l~~~~  138 (231)
T TIGR02752        70 EGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-FD-----DN---SFDYVTIGFGLRNVPDYMQVLREMY  138 (231)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-CC-----CC---CccEEEEecccccCCCHHHHHHHHH
Confidence            35899999999999999999988887 5899999999764 2 21     35   8999998753   335677888899


Q ss_pred             hcccCCeEEEEeC
Q 044253           88 TLFKVGGIVIYDN  100 (139)
Q Consensus        88 ~lL~~gG~ii~~~  100 (139)
                      ++|+|||++++-+
T Consensus       139 ~~Lk~gG~l~~~~  151 (231)
T TIGR02752       139 RVVKPGGKVVCLE  151 (231)
T ss_pred             HHcCcCeEEEEEE
Confidence            9999999998754

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.59  E-value=1.4e-07  Score=69.54  Aligned_cols=82  Identities=15%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cc
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DN   78 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~   78 (139)
                      +++.+..+.+|+++|+|+.+++.++++.+..++.  +++..+|....  .+      ..   +||+|++....     ..
T Consensus        45 a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~------~~---~fD~I~~~~~~~~~~~~~  111 (195)
T TIGR00477        45 SLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL------NE---DYDFIFSTVVFMFLQAGR  111 (195)
T ss_pred             HHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc------cC---CCCEEEEecccccCCHHH
Confidence            4455667889999999999999999999888874  77888887542  12      35   89999876422     23


Q ss_pred             hHHHHHHHhhcccCCeEEEE
Q 044253           79 YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~   98 (139)
                      ...+++.+.+.|+|||++++
T Consensus       112 ~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477       112 VPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             HHHHHHHHHHHhCCCcEEEE
Confidence            45788899999999998554

Part of a tellurite-reducing operon tehA and tehB

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.59  E-value=3.6e-07  Score=73.30  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=65.0

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh------hh---cccCCCceeEEEEc
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD------EK---IHFFFENFDYAFVD   73 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~------~~---~~~~~~~fD~If~D   73 (139)
                      |+++.+....+|++||+++++++.|++|++.+|+. +++++++|+.++++.....      .+   ...   .||+||+|
T Consensus       211 ~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~v~lD  286 (353)
T TIGR02143       211 FSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY---NCSTIFVD  286 (353)
T ss_pred             HHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccccC---CCCEEEEC
Confidence            45666766679999999999999999999999984 6999999999987642100      00   001   48999999


Q ss_pred             CCCcc-hHHHHHHHhhcccCCeEEEE
Q 044253           74 AHKDN-YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        74 ~~~~~-~~~~~~~~~~lL~~gG~ii~   98 (139)
                      |+... ....++.+.+   +++++++
T Consensus       287 PPR~G~~~~~l~~l~~---~~~ivYv  309 (353)
T TIGR02143       287 PPRAGLDPDTCKLVQA---YERILYI  309 (353)
T ss_pred             CCCCCCcHHHHHHHHc---CCcEEEE
Confidence            98554 3445555544   6777766

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.59  E-value=1.6e-07  Score=67.29  Aligned_cols=78  Identities=14%  Similarity=0.030  Sum_probs=59.5

Q ss_pred             eEEeCCccHHHHHHHHHHHc--CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHhhc
Q 044253           15 VAIDVSRESSETGLPIIKKV--EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLMTL   89 (139)
Q Consensus        15 ~~vD~s~~~~~~Ar~n~~~~--g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~~l   89 (139)
                      +++|+|++|++.|+++....  +...+++++++|+.+. +. .     .+   +||+|++....   .+....++.+.+.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~-----~~---~fD~v~~~~~l~~~~d~~~~l~ei~rv   70 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF-D-----DC---EFDAVTMGYGLRNVVDRLRAMKEMYRV   70 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC-C-----CC---CeeEEEecchhhcCCCHHHHHHHHHHH
Confidence            58999999999998776532  2235799999999875 32 1     45   89999986532   3466788999999


Q ss_pred             ccCCeEEEEeCCC
Q 044253           90 FKVGGIVIYDNTL  102 (139)
Q Consensus        90 L~~gG~ii~~~~~  102 (139)
                      |+|||.+++-+..
T Consensus        71 LkpGG~l~i~d~~   83 (160)
T PLN02232         71 LKPGSRVSILDFN   83 (160)
T ss_pred             cCcCeEEEEEECC
Confidence            9999999876553

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.58  E-value=5e-08  Score=76.50  Aligned_cols=86  Identities=19%  Similarity=0.186  Sum_probs=64.7

Q ss_pred             chhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            4 NLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         4 ~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      ++.+++.++ +|+++|+|+.+++.|++|++.+|+.+++++.  ...+.   .      ..   +||+|+.+-...-...+
T Consensus       176 aiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---~------~~---~~dlvvANI~~~vL~~l  241 (295)
T PF06325_consen  176 AIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---V------EG---KFDLVVANILADVLLEL  241 (295)
T ss_dssp             HHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---C------CS----EEEEEEES-HHHHHHH
T ss_pred             HHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---c------cc---cCCEEEECCCHHHHHHH
Confidence            566776666 6999999999999999999999998877764  11111   1      24   89999998765555667


Q ss_pred             HHHHhhcccCCeEEEEeCCCC
Q 044253           83 RETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      ...+.++|+|||++++..++.
T Consensus       242 ~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  242 APDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             HHHCHHHEEEEEEEEEEEEEG
T ss_pred             HHHHHHhhCCCCEEEEccccH
Confidence            777888999999999877665

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.57  E-value=1.4e-07  Score=71.97  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=63.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~   84 (139)
                      ...+++++|+|++|++.|++++...+...+++++++|+.+. +        ..   .+|+|++....     .....+++
T Consensus        81 ~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~--------~~---~~D~vv~~~~l~~l~~~~~~~~l~  148 (247)
T PRK15451         81 DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IE---NASMVVLNFTLQFLEPSERQALLD  148 (247)
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-C--------CC---CCCEEehhhHHHhCCHHHHHHHHH
Confidence            35789999999999999999999888877899999998764 1        24   68998875421     12356789


Q ss_pred             HHhhcccCCeEEEEeC
Q 044253           85 TLMTLFKVGGIVIYDN  100 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~  100 (139)
                      .+.+.|+|||.+++.+
T Consensus       149 ~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        149 KIYQGLNPGGALVLSE  164 (247)
T ss_pred             HHHHhcCCCCEEEEEE
Confidence            9999999999998865

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.57  E-value=1.5e-07  Score=70.23  Aligned_cols=81  Identities=15%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~~   87 (139)
                      ..+|+++|+|+++++.|++++...|+.++++++.+|+... + .      .+   +||+|++..   ...+...+++.+.
T Consensus        23 ~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~---~fD~I~~~~~l~~~~~~~~~l~~~~   91 (224)
T smart00828       23 HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PD---TYDLVFGFEVIHHIKDKMDLFSNIS   91 (224)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CC---CCCEeehHHHHHhCCCHHHHHHHHH
Confidence            4689999999999999999999999988999999998543 1 1      35   899999743   2235678899999


Q ss_pred             hcccCCeEEEEeCCC
Q 044253           88 TLFKVGGIVIYDNTL  102 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~  102 (139)
                      ++|+|||++++.+..
T Consensus        92 ~~LkpgG~l~i~~~~  106 (224)
T smart00828       92 RHLKDGGHLVLADFI  106 (224)
T ss_pred             HHcCCCCEEEEEEcc
Confidence            999999999987653

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.57  E-value=1.6e-07  Score=71.92  Aligned_cols=77  Identities=14%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH-HHH-hhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP-ALD-QLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~-~l~-~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+|++.|.+++.++.|++|++.+|+.+++++.+.|+.+ ... .+      +.   .+|.||+|-+  .++..++.+.+
T Consensus        65 ~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~------~~---~~DavfLDlp--~Pw~~i~~~~~  133 (247)
T PF08704_consen   65 TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL------ES---DFDAVFLDLP--DPWEAIPHAKR  133 (247)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-------TT---SEEEEEEESS--SGGGGHHHHHH
T ss_pred             CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc------cC---cccEEEEeCC--CHHHHHHHHHH
Confidence            358999999999999999999999998899999999963 221 11      24   7999999986  45667888889


Q ss_pred             cc-cCCeEEEE
Q 044253           89 LF-KVGGIVIY   98 (139)
Q Consensus        89 lL-~~gG~ii~   98 (139)
                      .| ++||.+++
T Consensus       134 ~L~~~gG~i~~  144 (247)
T PF08704_consen  134 ALKKPGGRICC  144 (247)
T ss_dssp             HE-EEEEEEEE
T ss_pred             HHhcCCceEEE
Confidence            99 89999975

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.55  E-value=2.3e-07  Score=72.21  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=64.8

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----Ccc
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDN   78 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~   78 (139)
                      +++.+..+.+|+++|+|+++++.++++++..++  ++++..+|+...  .+      .+   +||+|++...     ...
T Consensus       135 ~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~---~fD~I~~~~vl~~l~~~~  201 (287)
T PRK12335        135 SLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QE---EYDFILSTVVLMFLNRER  201 (287)
T ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cC---CccEEEEcchhhhCCHHH
Confidence            455666788999999999999999999998887  588888887653  12      35   8999998642     124


Q ss_pred             hHHHHHHHhhcccCCeEEEE
Q 044253           79 YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~   98 (139)
                      ...+++.+.+.|+|||++++
T Consensus       202 ~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        202 IPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             HHHHHHHHHHhcCCCcEEEE
Confidence            56788899999999999654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.54  E-value=3.4e-07  Score=69.95  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=60.5

Q ss_pred             hhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253            7 STFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus         7 ~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      ++..+. +|+++|+|+.+++.|++|++.+++.+++.+..+               +.   +||+|+++.....+..+++.
T Consensus       137 ~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~---------------~~---~fD~Vvani~~~~~~~l~~~  198 (250)
T PRK00517        137 AAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG---------------DL---KADVIVANILANPLLELAPD  198 (250)
T ss_pred             HHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC---------------CC---CcCEEEEcCcHHHHHHHHHH
Confidence            333444 599999999999999999999988555554332               13   69999998765556678888


Q ss_pred             HhhcccCCeEEEEeCCC
Q 044253           86 LMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~  102 (139)
                      +.+.|+|||++++..+.
T Consensus       199 ~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        199 LARLLKPGGRLILSGIL  215 (250)
T ss_pred             HHHhcCCCcEEEEEECc
Confidence            99999999999987554

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.53  E-value=3.2e-07  Score=70.35  Aligned_cols=78  Identities=18%  Similarity=0.204  Sum_probs=60.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+++++|+|+++++.|++|+. .+...+++++++|+.+.+.        ..   +||+|+++++...            
T Consensus       132 ~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--------~~---~fD~Iv~npPy~~~~~~~~~~~~v~  199 (275)
T PRK09328        132 DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--------GG---RFDLIVSNPPYIPEADIHLLQPEVR  199 (275)
T ss_pred             CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--------CC---ceeEEEECCCcCCcchhhhCCchhh
Confidence            4789999999999999999998 4444689999999855321        25   8999999875321            


Q ss_pred             -----------------hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 -----------------YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 -----------------~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                                       +..+++.+.++|++||++++..
T Consensus       200 ~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        200 DHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             hcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence                             2345666678999999999853

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.52  E-value=2.2e-07  Score=61.15  Aligned_cols=71  Identities=15%  Similarity=0.202  Sum_probs=56.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-C-----cchHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-K-----DNYRNYRET   85 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-~-----~~~~~~~~~   85 (139)
                      .+++++|+|+++++.++++....+.  +++++++|+.++ +..      .+   +||+|++-.. .     .....+++.
T Consensus        25 ~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~---~~D~v~~~~~~~~~~~~~~~~~ll~~   92 (101)
T PF13649_consen   25 SRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DG---KFDLVVCSGLSLHHLSPEELEALLRR   92 (101)
T ss_dssp             SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SS---SEEEEEE-TTGGGGSSHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CC---CeeEEEEcCCccCCCCHHHHHHHHHH
Confidence            7899999999999999999988776  699999999885 432      56   8999999332 1     234567888


Q ss_pred             HhhcccCCe
Q 044253           86 LMTLFKVGG   94 (139)
Q Consensus        86 ~~~lL~~gG   94 (139)
                      +.++|+|||
T Consensus        93 ~~~~l~pgG  101 (101)
T PF13649_consen   93 IARLLRPGG  101 (101)
T ss_dssp             HHHTEEEEE
T ss_pred             HHHHhCCCC
Confidence            999999998

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.50  E-value=3.4e-07  Score=70.47  Aligned_cols=82  Identities=13%  Similarity=0.013  Sum_probs=62.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHH--cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKK--VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~--~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~   86 (139)
                      .+|+++|+|++|++.|+++...  .+..++++++++|+.+. + +.     ++   +||+|++...   ..+....+..+
T Consensus        99 ~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~~-----~~---sfD~V~~~~~l~~~~d~~~~l~ei  168 (261)
T PLN02233         99 GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-FD-----DC---YFDAITMGYGLRNVVDRLKAMQEM  168 (261)
T ss_pred             CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-CC-----CC---CEeEEEEecccccCCCHHHHHHHH
Confidence            5899999999999999987642  22235799999998764 2 21     45   8999998642   23567789999


Q ss_pred             hhcccCCeEEEEeCCCC
Q 044253           87 MTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~~~  103 (139)
                      .+.|+|||.+++-+...
T Consensus       169 ~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        169 YRVLKPGSRVSILDFNK  185 (261)
T ss_pred             HHHcCcCcEEEEEECCC
Confidence            99999999998765543

>TIGR00740 methyltransferase, putative

Probab=98.49  E-value=6e-07  Score=67.89  Aligned_cols=81  Identities=10%  Similarity=0.109  Sum_probs=64.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~   85 (139)
                      ..+++++|+|+++++.|++++...+...+++++++|+.+. +        ..   .+|+|++.....     +...+++.
T Consensus        79 ~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~---~~d~v~~~~~l~~~~~~~~~~~l~~  146 (239)
T TIGR00740        79 NVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--------IK---NASMVILNFTLQFLPPEDRIALLTK  146 (239)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-C--------CC---CCCEEeeecchhhCCHHHHHHHHHH
Confidence            5689999999999999999998877666899999999765 1        24   689888754321     23567889


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.|+|||.+++.+...
T Consensus       147 i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       147 IYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             HHHhcCCCeEEEEeeccc
Confidence            999999999999876543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.45  E-value=1.2e-06  Score=72.73  Aligned_cols=82  Identities=22%  Similarity=0.191  Sum_probs=65.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY------------   79 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~------------   79 (139)
                      ..|+++|+++..+..+++|+++.|+. ++.+.+.|+......+      ..   .||.|++|++....            
T Consensus       139 g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~------~~---~fD~ILvDaPCSG~G~~rk~p~~~~~  208 (470)
T PRK11933        139 GAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAAL------PE---TFDAILLDAPCSGEGTVRKDPDALKN  208 (470)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhc------hh---hcCeEEEcCCCCCCcccccCHHHhhh
Confidence            57999999999999999999999994 6899999988753333      35   79999999865410            


Q ss_pred             -------------HHHHHHHhhcccCCeEEEEeCCCC
Q 044253           80 -------------RNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        80 -------------~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                   ..+++.+.++|+|||+||+....+
T Consensus       209 ~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        209 WSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence                         345677778999999999755443

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.44  E-value=3.7e-07  Score=68.65  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=53.7

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +..+..|++||+||..+..||.|++-.|+.+||+|++||.++..+.+...   ..   .+|+||.-|+.
T Consensus       113 a~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~---~~~~vf~sppw  175 (263)
T KOG2730|consen  113 ALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KI---KYDCVFLSPPW  175 (263)
T ss_pred             HHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hh---eeeeeecCCCC
Confidence            44567899999999999999999999999999999999999988766332   24   68899998764

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.43  E-value=1.3e-06  Score=70.83  Aligned_cols=79  Identities=16%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------hHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------YRN   81 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------~~~   81 (139)
                      ...++++|+++.+++.|.+++...|+. ++.++++|+...+..+.     .+   ++|.|++..+-+.         ...
T Consensus       146 ~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~-----~~---s~D~I~lnFPdPW~KkrHRRlv~~~  216 (390)
T PRK14121        146 NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLP-----SN---SVEKIFVHFPVPWDKKPHRRVISED  216 (390)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCC-----CC---ceeEEEEeCCCCccccchhhccHHH
Confidence            578999999999999999999999984 69999999988765443     45   8999998653211         156


Q ss_pred             HHHHHhhcccCCeEEEE
Q 044253           82 YRETLMTLFKVGGIVIY   98 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~   98 (139)
                      +++.+.++|++||.+.+
T Consensus       217 fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        217 FLNEALRVLKPGGTLEL  233 (390)
T ss_pred             HHHHHHHHcCCCcEEEE
Confidence            78899999999999876

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.42  E-value=1e-06  Score=67.66  Aligned_cols=77  Identities=14%  Similarity=0.113  Sum_probs=65.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCc--EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLK--INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~--i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~   86 (139)
                      ++|+.+|+|++|++.+++...+.++.+.  +.++++||.++ + +.     ++   +||...+-..   ..++.+.++++
T Consensus       131 ~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-Fd-----d~---s~D~yTiafGIRN~th~~k~l~EA  200 (296)
T KOG1540|consen  131 SKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-FD-----DD---SFDAYTIAFGIRNVTHIQKALREA  200 (296)
T ss_pred             ceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-CC-----CC---cceeEEEecceecCCCHHHHHHHH
Confidence            7899999999999999999988888554  99999999885 4 42     56   8999988764   34567889999


Q ss_pred             hhcccCCeEEEE
Q 044253           87 MTLFKVGGIVIY   98 (139)
Q Consensus        87 ~~lL~~gG~ii~   98 (139)
                      .+.|||||++.+
T Consensus       201 YRVLKpGGrf~c  212 (296)
T KOG1540|consen  201 YRVLKPGGRFSC  212 (296)
T ss_pred             HHhcCCCcEEEE
Confidence            999999999875

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.40  E-value=1.1e-06  Score=70.29  Aligned_cols=74  Identities=12%  Similarity=0.134  Sum_probs=59.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------hHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------YRNY   82 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------~~~~   82 (139)
                      ..+|+++|+|+.+++.|++|++.+++.  .+++.+|+...   .      .+   +||+|+++++...        ...+
T Consensus       220 ~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~------~~---~fDlIvsNPPFH~g~~~~~~~~~~~  285 (342)
T PRK09489        220 KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I------KG---RFDMIISNPPFHDGIQTSLDAAQTL  285 (342)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c------CC---CccEEEECCCccCCccccHHHHHHH
Confidence            358999999999999999999999874  57788887643   2      35   8999999986432        3567


Q ss_pred             HHHHhhcccCCeEEEE
Q 044253           83 RETLMTLFKVGGIVIY   98 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~   98 (139)
                      +..+.+.|+|||.+++
T Consensus       286 i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        286 IRGAVRHLNSGGELRI  301 (342)
T ss_pred             HHHHHHhcCcCCEEEE
Confidence            8888899999999865

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.39  E-value=1.4e-06  Score=69.28  Aligned_cols=73  Identities=22%  Similarity=0.339  Sum_probs=59.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV   92 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~   92 (139)
                      +|+++|+++++++.|+++++..|. ++++++++|+.+.+..       ..   +||+|+++.....   ..+.+.+.|++
T Consensus       107 ~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-------~~---~fD~Ii~~~g~~~---ip~~~~~~Lkp  172 (322)
T PRK13943        107 LVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE-------FA---PYDVIFVTVGVDE---VPETWFTQLKE  172 (322)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc-------cC---CccEEEECCchHH---hHHHHHHhcCC
Confidence            599999999999999999999998 5799999998765432       25   8999999875433   33456789999


Q ss_pred             CeEEEEe
Q 044253           93 GGIVIYD   99 (139)
Q Consensus        93 gG~ii~~   99 (139)
                      ||.+++.
T Consensus       173 gG~Lvv~  179 (322)
T PRK13943        173 GGRVIVP  179 (322)
T ss_pred             CCEEEEE
Confidence            9998874

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.37  E-value=1.6e-06  Score=63.31  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=57.1

Q ss_pred             eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------chHHH
Q 044253           14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NYRNY   82 (139)
Q Consensus        14 v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~~~~   82 (139)
                      ++++|+++++++.|++|++..|+.+.+.+.+.|+.++- ..      .+   ++|.|++|+++.           -|..+
T Consensus        64 ~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~------~~---~~d~IvtnPPyG~r~~~~~~~~~ly~~~  133 (179)
T PF01170_consen   64 IIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LP------DG---SVDAIVTNPPYGRRLGSKKDLEKLYRQF  133 (179)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GT------TS---BSCEEEEE--STTSHCHHHHHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-cc------cC---CCCEEEECcchhhhccCHHHHHHHHHHH
Confidence            56999999999999999999999889999999998863 11      46   899999999753           24556


Q ss_pred             HHHHhhcccCCeEEEEe
Q 044253           83 RETLMTLFKVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~   99 (139)
                      ++.+.+.|++..++++.
T Consensus       134 ~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  134 LRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             HHHHHCHSTTCEEEEEE
T ss_pred             HHHHHHHCCCCEEEEEE
Confidence            77777889886666654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.37  E-value=1.2e-06  Score=64.81  Aligned_cols=85  Identities=14%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcc
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDN   78 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~   78 (139)
                      ++..|..|..|+++|+|+.+++.+++..+..++.  ++..+.|..+.  .+      .+   .||+|+...     ....
T Consensus        45 alyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~--~~------~~---~yD~I~st~v~~fL~~~~  111 (192)
T PF03848_consen   45 ALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDF--DF------PE---EYDFIVSTVVFMFLQREL  111 (192)
T ss_dssp             HHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCB--S-------TT---TEEEEEEESSGGGS-GGG
T ss_pred             HHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhc--cc------cC---CcCEEEEEEEeccCCHHH
Confidence            4678888999999999999999999999888885  99999997654  22      35   899998753     2234


Q ss_pred             hHHHHHHHhhcccCCeEEEEeCC
Q 044253           79 YRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      ...+++.+...++|||++++...
T Consensus       112 ~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen  112 RPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCcEEEEEEEe
Confidence            56788888899999999887443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.34  E-value=8e-07  Score=65.82  Aligned_cols=81  Identities=11%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------CcchH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KDNYR   80 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~~~~   80 (139)
                      .|.+..+++++|+++.+++.||+.+...   ++++++++|+.+..+        .+   +||+|++-..      .....
T Consensus        61 LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~---~FDLIV~SEVlYYL~~~~~L~  126 (201)
T PF05401_consen   61 LAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EG---RFDLIVLSEVLYYLDDAEDLR  126 (201)
T ss_dssp             HGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS----EEEEEEES-GGGSSSHHHHH
T ss_pred             HHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CC---CeeEEEEehHhHcCCCHHHHH
Confidence            4556678999999999999999988643   479999999977643        46   8999998642      12234


Q ss_pred             HHHHHHhhcccCCeEEEEeCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      .++..+...|+|||.+|+-+.
T Consensus       127 ~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  127 AALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEe
Confidence            567788899999999998543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.33  E-value=6e-07  Score=69.03  Aligned_cols=86  Identities=15%  Similarity=0.084  Sum_probs=65.9

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCC-----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDL-----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HK   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~   76 (139)
                      -+.|+.++.|++||.++++++.|++.....+..+     ++++.+.++...          .+   +||.|++--   ..
T Consensus       105 epLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~---~fDaVvcsevleHV  171 (282)
T KOG1270|consen  105 EPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG---KFDAVVCSEVLEHV  171 (282)
T ss_pred             hhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc---ccceeeeHHHHHHH
Confidence            3678889999999999999999999855555433     366666666543          35   899999854   23


Q ss_pred             cchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      .+..++++.+.++|+|||.+++..+..
T Consensus       172 ~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  172 KDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            356788999999999999999876543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.31  E-value=1.4e-06  Score=67.14  Aligned_cols=80  Identities=16%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE-cCC----CcchHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV-DAH----KDNYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~-D~~----~~~~~~~~~~   85 (139)
                      +.+|+++|+|+++++.|++++..   .++++++++|+... + +.     +.   +||+|++ +.-    ..+...+++.
T Consensus        75 ~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~~-----~~---~FD~V~s~~~l~h~~~~d~~~~l~~  141 (263)
T PTZ00098         75 GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-FP-----EN---TFDMIYSRDAILHLSYADKKKLFEK  141 (263)
T ss_pred             CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-CC-----CC---CeEEEEEhhhHHhCCHHHHHHHHHH
Confidence            56899999999999999998654   35799999998743 1 21     35   8999998 321    1245678899


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.++|+|||.+++.+...
T Consensus       142 i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        142 CYKWLKPNGILLITDYCA  159 (263)
T ss_pred             HHHHcCCCcEEEEEEecc
Confidence            999999999999876544

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.31  E-value=1.1e-06  Score=69.97  Aligned_cols=85  Identities=13%  Similarity=0.150  Sum_probs=69.1

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKD----   77 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----   77 (139)
                      |.++++..+++++++|++..|+.-|+.|++..++.+ ..++.. |+... + +.     +.   ++|.|.+||++.    
T Consensus       211 iLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~l-p-l~-----~~---~vdaIatDPPYGrst~  279 (347)
T COG1041         211 ILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNL-P-LR-----DN---SVDAIATDPPYGRSTK  279 (347)
T ss_pred             HHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccC-C-CC-----CC---ccceEEecCCCCcccc
Confidence            457888999999999999999999999999999854 555555 88775 3 42     34   699999999653    


Q ss_pred             --------chHHHHHHHhhcccCCeEEEE
Q 044253           78 --------NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 --------~~~~~~~~~~~lL~~gG~ii~   98 (139)
                              -|.+.++.+.+.|++||++++
T Consensus       280 ~~~~~l~~Ly~~~le~~~evLk~gG~~vf  308 (347)
T COG1041         280 IKGEGLDELYEEALESASEVLKPGGRIVF  308 (347)
T ss_pred             cccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence                    156778888899999999886

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.30  E-value=1.2e-06  Score=65.97  Aligned_cols=83  Identities=11%  Similarity=0.025  Sum_probs=59.4

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------------DLKINLMESRALPALDQLLKDEKIHFFFENFDY   69 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~   69 (139)
                      ++..|.++.+|++||+|+.+++.+.+   +.++              ..+++++++|+.+.....      ..   .||+
T Consensus        52 a~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~------~~---~fd~  119 (218)
T PRK13255         52 MLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD------LA---DVDA  119 (218)
T ss_pred             HHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc------CC---CeeE
Confidence            45567789999999999999998743   2222              357999999998763221      24   7999


Q ss_pred             EEEc-----CCCcchHHHHHHHhhcccCCeEEEE
Q 044253           70 AFVD-----AHKDNYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        70 If~D-----~~~~~~~~~~~~~~~lL~~gG~ii~   98 (139)
                      |+--     .+...-..++..+.++|+|||++++
T Consensus       120 v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        120 VYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             EEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            9832     2333446788999999999986443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.30  E-value=2.3e-06  Score=70.80  Aligned_cols=81  Identities=14%  Similarity=0.128  Sum_probs=63.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +.+|+++|+|+++++.|+++..  +...+++++++|+... + +.     .+   +||+|++...   ..+...++..+.
T Consensus       289 ~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~-~-~~-----~~---~fD~I~s~~~l~h~~d~~~~l~~~~  356 (475)
T PLN02336        289 DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKK-T-YP-----DN---SFDVIYSRDTILHIQDKPALFRSFF  356 (475)
T ss_pred             CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccC-C-CC-----CC---CEEEEEECCcccccCCHHHHHHHHH
Confidence            5689999999999999999875  4446799999998764 1 21     35   7999998643   234677899999


Q ss_pred             hcccCCeEEEEeCCCC
Q 044253           88 TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~  103 (139)
                      +.|+|||.+++.+...
T Consensus       357 r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        357 KWLKPGGKVLISDYCR  372 (475)
T ss_pred             HHcCCCeEEEEEEecc
Confidence            9999999999876544

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.30  E-value=2.5e-07  Score=60.50  Aligned_cols=78  Identities=17%  Similarity=0.163  Sum_probs=46.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~   86 (139)
                      ...+++++|+|+.+++.|++.+...+.. .......+..+......     .+   +||+|++-..   ..+...+++.+
T Consensus        19 ~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~---~fD~V~~~~vl~~l~~~~~~l~~~   89 (99)
T PF08242_consen   19 PDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDP-----PE---SFDLVVASNVLHHLEDIEAVLRNI   89 (99)
T ss_dssp             -EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC------------SEEEEE-TTS--S-HHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhccc-----cc---ccceehhhhhHhhhhhHHHHHHHH
Confidence            4678999999999999999999987753 33334333333322211     24   8999998653   23556788999


Q ss_pred             hhcccCCeEE
Q 044253           87 MTLFKVGGIV   96 (139)
Q Consensus        87 ~~lL~~gG~i   96 (139)
                      .++|+|||+|
T Consensus        90 ~~~L~pgG~l   99 (99)
T PF08242_consen   90 YRLLKPGGIL   99 (99)
T ss_dssp             TTT-TSS-EE
T ss_pred             HHHcCCCCCC
Confidence            9999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.28  E-value=5.7e-06  Score=62.05  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYR   83 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~   83 (139)
                      .+..+.+++++|++++++..|++++...+.  +++++.+++.+.....      .+   +||+|++...   ..+...++
T Consensus        66 l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~------~~---~fD~Ii~~~~l~~~~~~~~~l  134 (233)
T PRK05134         66 MARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH------PG---QFDVVTCMEMLEHVPDPASFV  134 (233)
T ss_pred             HHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc------CC---CccEEEEhhHhhccCCHHHHH
Confidence            344467899999999999999999987775  5888889888764322      35   8999998642   23456678


Q ss_pred             HHHhhcccCCeEEEEeC
Q 044253           84 ETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~  100 (139)
                      +.+.+.|++||.+++..
T Consensus       135 ~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        135 RACAKLVKPGGLVFFST  151 (233)
T ss_pred             HHHHHHcCCCcEEEEEe
Confidence            88999999999999864

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.28  E-value=1.9e-06  Score=65.64  Aligned_cols=72  Identities=17%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      ..+|+++|+|+.+++.|++++      .+++++.+|+.....        ..   +||+|++....   .+...++..+.
T Consensus        55 ~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~---~fD~v~~~~~l~~~~d~~~~l~~~~  117 (258)
T PRK01683         55 AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQ---ALDLIFANASLQWLPDHLELFPRLV  117 (258)
T ss_pred             CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CC---CccEEEEccChhhCCCHHHHHHHHH
Confidence            578999999999999999874      358899999875421        35   89999998642   34567899999


Q ss_pred             hcccCCeEEEEe
Q 044253           88 TLFKVGGIVIYD   99 (139)
Q Consensus        88 ~lL~~gG~ii~~   99 (139)
                      +.|+|||.+++.
T Consensus       118 ~~LkpgG~~~~~  129 (258)
T PRK01683        118 SLLAPGGVLAVQ  129 (258)
T ss_pred             HhcCCCcEEEEE
Confidence            999999999885

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.28  E-value=1.8e-06  Score=65.92  Aligned_cols=70  Identities=11%  Similarity=-0.008  Sum_probs=56.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +.+|+++|+|+.+++.|++.        +++++++|+.+.. .       ..   +||+|++...   ..+....+..+.
T Consensus        53 ~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~-------~~---~fD~v~~~~~l~~~~d~~~~l~~~~  113 (255)
T PRK14103         53 GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-P-------KP---DTDVVVSNAALQWVPEHADLLVRWV  113 (255)
T ss_pred             CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-C-------CC---CceEEEEehhhhhCCCHHHHHHHHH
Confidence            56899999999999999762        4788999987642 1       35   8999999763   234567888899


Q ss_pred             hcccCCeEEEEe
Q 044253           88 TLFKVGGIVIYD   99 (139)
Q Consensus        88 ~lL~~gG~ii~~   99 (139)
                      +.|+|||.+++.
T Consensus       114 ~~LkpgG~l~~~  125 (255)
T PRK14103        114 DELAPGSWIAVQ  125 (255)
T ss_pred             HhCCCCcEEEEE
Confidence            999999999875

>PRK10742 putative methyltransferase; Provisional

Probab=98.26  E-value=2.7e-06  Score=65.17  Aligned_cols=64  Identities=8%  Similarity=-0.003  Sum_probs=53.1

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHc------CC--CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKV------EV--DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~------g~--~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +..+..+++|++||.|+......+++++..      +.  ..+++++++|+.++|...      ..   +||+||+||..
T Consensus       104 ~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~~---~fDVVYlDPMf  174 (250)
T PRK10742        104 FVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TP---RPQVVYLDPMF  174 (250)
T ss_pred             HHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------CC---CCcEEEECCCC
Confidence            455566888999999999999999999985      32  257999999999999865      45   79999999854


Q ss_pred             c
Q 044253           77 D   77 (139)
Q Consensus        77 ~   77 (139)
                      +
T Consensus       175 p  175 (250)
T PRK10742        175 P  175 (250)
T ss_pred             C
Confidence            3

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.25  E-value=2.6e-06  Score=63.44  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~   88 (139)
                      .+++++|+++++++.+++++...+...+++++.+|+.+..  ..     ..   +||+|++...   .......++.+.+
T Consensus        77 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~-----~~---~~D~I~~~~~l~~~~~~~~~l~~~~~  146 (239)
T PRK00216         77 GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--FP-----DN---SFDAVTIAFGLRNVPDIDKALREMYR  146 (239)
T ss_pred             CeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--CC-----CC---CccEEEEecccccCCCHHHHHHHHHH
Confidence            7899999999999999999987777678999999987642  11     35   8999998642   2356778889999


Q ss_pred             cccCCeEEEEeCC
Q 044253           89 LFKVGGIVIYDNT  101 (139)
Q Consensus        89 lL~~gG~ii~~~~  101 (139)
                      +|++||.+++-+.
T Consensus       147 ~L~~gG~li~~~~  159 (239)
T PRK00216        147 VLKPGGRLVILEF  159 (239)
T ss_pred             hccCCcEEEEEEe
Confidence            9999999987543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.24  E-value=1.9e-06  Score=64.59  Aligned_cols=86  Identities=10%  Similarity=-0.006  Sum_probs=59.8

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------------DLKINLMESRALPALDQLLKDEKIHFFFENFDY   69 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~   69 (139)
                      ++..|..+.+|++||+|+.+++.+.+.   +++              ..+++++++|+.+.-...      ..   +||.
T Consensus        49 a~~LA~~G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~------~~---~fD~  116 (213)
T TIGR03840        49 LAWLAEQGHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD------LG---PVDA  116 (213)
T ss_pred             HHHHHhCCCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCccc------CC---CcCE
Confidence            455677889999999999999986432   221              246899999998762211      24   6888


Q ss_pred             EEEcC-----CCcchHHHHHHHhhcccCCeEEEEeCC
Q 044253           70 AFVDA-----HKDNYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        70 If~D~-----~~~~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      |+--+     +......++..+.++|+|||++++...
T Consensus       117 i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       117 VYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             EEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            86432     222345688999999999998665433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=4.7e-06  Score=67.00  Aligned_cols=84  Identities=21%  Similarity=0.298  Sum_probs=65.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      ..|+++|+|+..+...++|+++.|+. ++.+.+.|+.........    ..   +||.|++|++...             
T Consensus       183 ~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~----~~---~fD~iLlDaPCSg~G~irr~Pd~~~~  254 (355)
T COG0144         183 AIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPG----GE---KFDRILLDAPCSGTGVIRRDPDVKWR  254 (355)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccc----cC---cCcEEEECCCCCCCcccccCcccccc
Confidence            34799999999999999999999996 488888888766433321    23   5999999986431             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                  -..+++.+.++|+|||.|++.....
T Consensus       255 ~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         255 RTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence                        1346677789999999999876655

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.23  E-value=9.6e-06  Score=51.30  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----chHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----NYRNYRET   85 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----~~~~~~~~   85 (139)
                      ...+++++|.+++....+++.....+ ..+++++.+|..+.....      ..   +||+|+++....    ....+++.
T Consensus        20 ~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~---~~d~i~~~~~~~~~~~~~~~~l~~   89 (107)
T cd02440          20 PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEA------DE---SFDVIISDPPLHHLVEDLARFLEE   89 (107)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcccc------CC---ceEEEEEccceeehhhHHHHHHHH
Confidence            45789999999999999997544433 357999999998875311      35   899999988643    34667888


Q ss_pred             HhhcccCCeEEEEe
Q 044253           86 LMTLFKVGGIVIYD   99 (139)
Q Consensus        86 ~~~lL~~gG~ii~~   99 (139)
                      +.+.|++||.+++.
T Consensus        90 ~~~~l~~~g~~~~~  103 (107)
T cd02440          90 ARRLLKPGGVLVLT  103 (107)
T ss_pred             HHHHcCCCCEEEEE
Confidence            88999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.22  E-value=4.6e-06  Score=59.96  Aligned_cols=92  Identities=8%  Similarity=-0.106  Sum_probs=66.3

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      +.+....+|+++|+|+.+++.+++++..   .++++++++|+.+...  .     ..   +||.|+.+++.......+..
T Consensus        30 ~l~~~~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~--~-----~~---~~d~vi~n~Py~~~~~~i~~   96 (169)
T smart00650       30 ELLERAARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL--P-----KL---QPYKVVGNLPYNISTPILFK   96 (169)
T ss_pred             HHHhcCCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc--c-----cc---CCCEEEECCCcccHHHHHHH
Confidence            3444467899999999999999999854   2579999999987621  1     24   69999999987655566666


Q ss_pred             Hhh--cccCCeEEEEeCCCCCcccccc
Q 044253           86 LMT--LFKVGGIVIYDNTLWGGTVAMA  110 (139)
Q Consensus        86 ~~~--lL~~gG~ii~~~~~~~~~~~~~  110 (139)
                      +..  .+.++|++++..-.....++.|
T Consensus        97 ~l~~~~~~~~~~l~~q~e~a~rl~~~~  123 (169)
T smart00650       97 LLEEPPAFRDAVLMVQKEVARRLAAKP  123 (169)
T ss_pred             HHhcCCCcceEEEEEEHHHhHHhcCCC
Confidence            664  3458888887665444444444

>PRK04266 fibrillarin; Provisional

Probab=98.20  E-value=5.3e-06  Score=62.79  Aligned_cols=76  Identities=13%  Similarity=0.115  Sum_probs=56.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCcc-hHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKDN-YRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~~-~~~~~~~~~~   88 (139)
                      .+|+++|++++|++.++++++..   .++.++.+|+....  ..+      .+   +||+||+|..... ....++.+.+
T Consensus        97 g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l------~~---~~D~i~~d~~~p~~~~~~L~~~~r  164 (226)
T PRK04266         97 GVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV------VE---KVDVIYQDVAQPNQAEIAIDNAEF  164 (226)
T ss_pred             CeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc------cc---cCCEEEECCCChhHHHHHHHHHHH
Confidence            58999999999999888877643   46899999986421  111      25   7999999875322 2335778889


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .|+|||.+++.
T Consensus       165 ~LKpGG~lvI~  175 (226)
T PRK04266        165 FLKDGGYLLLA  175 (226)
T ss_pred             hcCCCcEEEEE
Confidence            99999999985

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.20  E-value=9.4e-06  Score=60.33  Aligned_cols=84  Identities=20%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYR   83 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~   83 (139)
                      .+..+.+++++|.++++++.+++++...+.. ++++.++|+.+.....      ..   +||+|++..   ...+...++
T Consensus        63 l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~---~~D~i~~~~~l~~~~~~~~~l  132 (224)
T TIGR01983        63 LARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AK---SFDVVTCMEVLEHVPDPQAFI  132 (224)
T ss_pred             HHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CC---CccEEEehhHHHhCCCHHHHH
Confidence            3344567999999999999999999887763 6899999988764321      25   899999864   223556788


Q ss_pred             HHHhhcccCCeEEEEeC
Q 044253           84 ETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~  100 (139)
                      +.+.+.|++||.+++..
T Consensus       133 ~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       133 RACAQLLKPGGILFFST  149 (224)
T ss_pred             HHHHHhcCCCcEEEEEe
Confidence            89999999999998754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02672 methionine S-methyltransferase

Probab=98.18  E-value=5.3e-06  Score=74.62  Aligned_cols=87  Identities=14%  Similarity=0.082  Sum_probs=65.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCC---------------CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVD---------------LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~---------------~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      ..+|+++|+|+++++.|++|+..++++               ++++++++|..+.+...      ..   +||+|+.+|+
T Consensus       142 ~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~------~~---~fDlIVSNPP  212 (1082)
T PLN02672        142 PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN------NI---ELDRIVGCIP  212 (1082)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc------CC---ceEEEEECCC
Confidence            468999999999999999999987542               57999999998775321      24   6999999874


Q ss_pred             Cc-----------------------------------------chHHHHHHHhhcccCCeEEEEeCCCCCcc
Q 044253           76 KD-----------------------------------------NYRNYRETLMTLFKVGGIVIYDNTLWGGT  106 (139)
Q Consensus        76 ~~-----------------------------------------~~~~~~~~~~~lL~~gG~ii~~~~~~~~~  106 (139)
                      +-                                         .|..++..+..+|+|||+++++.....+.
T Consensus       213 YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~  284 (1082)
T PLN02672        213 QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ  284 (1082)
T ss_pred             cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence            20                                         01334555567999999999986655554

>PRK06922 hypothetical protein; Provisional

Probab=98.18  E-value=6.4e-06  Score=70.62  Aligned_cols=83  Identities=14%  Similarity=0.077  Sum_probs=62.6

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------------
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------------   76 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------------   76 (139)
                      ....+|+++|+|+.|++.|+++....+  .+++++++|+.+.-..+.     .+   +||+|++....            
T Consensus       440 ~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fe-----de---SFDvVVsn~vLH~L~syIp~~g~  509 (677)
T PRK06922        440 TEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFE-----KE---SVDTIVYSSILHELFSYIEYEGK  509 (677)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccC-----CC---CEEEEEEchHHHhhhhhcccccc
Confidence            346799999999999999999876655  368999999987421122     35   89999976421            


Q ss_pred             ----cchHHHHHHHhhcccCCeEEEEeCC
Q 044253           77 ----DNYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        77 ----~~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                          .....++..+.+.|+|||.+++.+.
T Consensus       510 ~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        510 KFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             cccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence                1335678888899999999998654

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.16  E-value=4.9e-06  Score=65.15  Aligned_cols=81  Identities=5%  Similarity=-0.070  Sum_probs=63.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~~   85 (139)
                      ..+++++|. +++++.++++++..|+.++++++.+|+++.  .+       .   .+|+|++....     .....+++.
T Consensus       173 ~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~~-------~---~~D~v~~~~~lh~~~~~~~~~il~~  239 (306)
T TIGR02716       173 ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY-------P---EADAVLFCRILYSANEQLSTIMCKK  239 (306)
T ss_pred             CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--CC-------C---CCCEEEeEhhhhcCChHHHHHHHHH
Confidence            468999998 799999999999999988999999998753  12       3   57998765421     122457888


Q ss_pred             HhhcccCCeEEEEeCCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~~  104 (139)
                      +.+.|+|||.+++.+..+.
T Consensus       240 ~~~~L~pgG~l~i~d~~~~  258 (306)
T TIGR02716       240 AFDAMRSGGRLLILDMVID  258 (306)
T ss_pred             HHHhcCCCCEEEEEEeccC
Confidence            9999999999988776554

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=7e-06  Score=64.37  Aligned_cols=75  Identities=13%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------hHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------YRNY   82 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------~~~~   82 (139)
                      ..+++++|+|..+++.||+|+..+++.. ..++.+|..+-.         .+   +||+|+++|+...        -..+
T Consensus       182 ~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v---------~~---kfd~IisNPPfh~G~~v~~~~~~~~  248 (300)
T COG2813         182 QAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV---------EG---KFDLIISNPPFHAGKAVVHSLAQEI  248 (300)
T ss_pred             CCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc---------cc---cccEEEeCCCccCCcchhHHHHHHH
Confidence            4689999999999999999999999864 378888776653         35   8999999997432        1367


Q ss_pred             HHHHhhcccCCeEEEE
Q 044253           83 RETLMTLFKVGGIVIY   98 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~   98 (139)
                      +..+.+.|++||-+-+
T Consensus       249 i~~A~~~L~~gGeL~i  264 (300)
T COG2813         249 IAAAARHLKPGGELWI  264 (300)
T ss_pred             HHHHHHhhccCCEEEE
Confidence            8888899999998743

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=4.7e-06  Score=61.35  Aligned_cols=59  Identities=10%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             Cchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            3 FNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         3 ~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      |++.++..+ .+|++||+|+++++.+++|..+.  ..++.++++|+.++          ..   ++|.++++|+.
T Consensus        59 La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~----------~~---~~dtvimNPPF  118 (198)
T COG2263          59 LAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF----------RG---KFDTVIMNPPF  118 (198)
T ss_pred             HHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc----------CC---ccceEEECCCC
Confidence            466666666 68999999999999999999983  36799999999886          45   89999999964

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.11  E-value=6.8e-06  Score=65.97  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHH---------hhhcccCCCceeEEEEc
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLK---------DEKIHFFFENFDYAFVD   73 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~---------~~~~~~~~~~fD~If~D   73 (139)
                      |+|+.|....+|++||+++++++.|++|++.+++ ++++++++++.++...+..         ......   .+|+|++|
T Consensus       210 fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~d~vilD  285 (352)
T PF05958_consen  210 FSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSF---KFDAVILD  285 (352)
T ss_dssp             CHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCT---TESEEEE-
T ss_pred             HHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhc---CCCEEEEc
Confidence            7899998999999999999999999999999999 4799999988765322110         000023   68999999


Q ss_pred             CCCcchH-HHHHHH
Q 044253           74 AHKDNYR-NYRETL   86 (139)
Q Consensus        74 ~~~~~~~-~~~~~~   86 (139)
                      |+..... ..++.+
T Consensus       286 PPR~G~~~~~~~~~  299 (352)
T PF05958_consen  286 PPRAGLDEKVIELI  299 (352)
T ss_dssp             --TT-SCHHHHHHH
T ss_pred             CCCCCchHHHHHHH
Confidence            9865443 344443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.10  E-value=1.3e-05  Score=63.69  Aligned_cols=81  Identities=16%  Similarity=0.105  Sum_probs=60.3

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhhc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMTL   89 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~l   89 (139)
                      +|+++|.|+.++..++..-+..+...+++++.+|+.+. +.       ..   +||+|++-..   ..+....++.+.+.
T Consensus       147 ~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~---~FD~V~s~~vl~H~~dp~~~L~~l~~~  215 (322)
T PRK15068        147 LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LK---AFDTVFSMGVLYHRRSPLDHLKQLKDQ  215 (322)
T ss_pred             EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cC---CcCEEEECChhhccCCHHHHHHHHHHh
Confidence            59999999998876655444444345799999998765 21       25   8999998652   23567789999999


Q ss_pred             ccCCeEEEEeCCCCC
Q 044253           90 FKVGGIVIYDNTLWG  104 (139)
Q Consensus        90 L~~gG~ii~~~~~~~  104 (139)
                      |+|||.++++.....
T Consensus       216 LkpGG~lvl~~~~i~  230 (322)
T PRK15068        216 LVPGGELVLETLVID  230 (322)
T ss_pred             cCCCcEEEEEEEEec
Confidence            999999998765443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.10  E-value=1.1e-05  Score=65.48  Aligned_cols=75  Identities=16%  Similarity=0.167  Sum_probs=59.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~~~~~   85 (139)
                      +.+|+++|+|+++++.|+++..  +.  .+++..+|+.+.          .+   +||.|++-.     +..++..+++.
T Consensus       190 g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~---~fD~Ivs~~~~ehvg~~~~~~~l~~  252 (383)
T PRK11705        190 GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NG---QFDRIVSVGMFEHVGPKNYRTYFEV  252 (383)
T ss_pred             CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CC---CCCEEEEeCchhhCChHHHHHHHHH
Confidence            6789999999999999999884  33  388888887543          25   899998643     22345778999


Q ss_pred             HhhcccCCeEEEEeCCC
Q 044253           86 LMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~  102 (139)
                      +.++|+|||.+++..+.
T Consensus       253 i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        253 VRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             HHHHcCCCcEEEEEEcc
Confidence            99999999999986543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.10  E-value=1.2e-05  Score=66.45  Aligned_cols=87  Identities=15%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYR   80 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~   80 (139)
                      ..+....+|+++|+++++++.+++.   .+..++++++++|+......+.     ..   +||+|++.....     ...
T Consensus        54 ~la~~~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~-----~~---~fD~I~~~~~l~~l~~~~~~  122 (475)
T PLN02336         54 ELAKKAGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNIS-----DG---SVDLIFSNWLLMYLSDKEVE  122 (475)
T ss_pred             HHHhhCCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCC-----CC---CEEEEehhhhHHhCCHHHHH
Confidence            4445567899999999999887653   3334579999999864211121     35   899999976322     135


Q ss_pred             HHHHHHhhcccCCeEEEEeCCCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      .+++.+.+.|+|||++++.+..+
T Consensus       123 ~~l~~~~r~Lk~gG~l~~~d~~~  145 (475)
T PLN02336        123 NLAERMVKWLKVGGYIFFRESCF  145 (475)
T ss_pred             HHHHHHHHhcCCCeEEEEEeccC
Confidence            67888889999999999876554

>PRK08317 hypothetical protein; Provisional

Probab=98.09  E-value=1.4e-05  Score=59.29  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=63.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      ..+++++|+|+.+++.++++...  ...+++++.+|+... + +.     ..   +||+|++...   ..+....++.+.
T Consensus        44 ~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~-~-~~-----~~---~~D~v~~~~~~~~~~~~~~~l~~~~  111 (241)
T PRK08317         44 EGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL-P-FP-----DG---SFDAVRSDRVLQHLEDPARALAEIA  111 (241)
T ss_pred             CcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC-C-CC-----CC---CceEEEEechhhccCCHHHHHHHHH
Confidence            35899999999999999998432  235799999988653 1 11     35   8999998752   235677899999


Q ss_pred             hcccCCeEEEEeCCCCCc
Q 044253           88 TLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~~~  105 (139)
                      ++|+|||.+++....+..
T Consensus       112 ~~L~~gG~l~~~~~~~~~  129 (241)
T PRK08317        112 RVLRPGGRVVVLDTDWDT  129 (241)
T ss_pred             HHhcCCcEEEEEecCCCc
Confidence            999999999987655543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.09  E-value=5e-06  Score=63.14  Aligned_cols=77  Identities=16%  Similarity=0.119  Sum_probs=58.9

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHH
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRET   85 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~   85 (139)
                      ..+.+|+++|+|+++++.|+++..      ...++++|+... + +.     +.   +||+|++...   ..+....+..
T Consensus        62 ~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~~-----~~---~fD~V~s~~~l~~~~d~~~~l~~  125 (251)
T PRK10258         62 ERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-LA-----TA---TFDLAWSNLAVQWCGNLSTALRE  125 (251)
T ss_pred             HcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-CC-----CC---cEEEEEECchhhhcCCHHHHHHH
Confidence            346789999999999999998742      246788888663 2 21     35   8999998763   2355678889


Q ss_pred             HhhcccCCeEEEEeCC
Q 044253           86 LMTLFKVGGIVIYDNT  101 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~  101 (139)
                      +.+.|+|||.+++...
T Consensus       126 ~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        126 LYRVVRPGGVVAFTTL  141 (251)
T ss_pred             HHHHcCCCeEEEEEeC
Confidence            9999999999998643

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.07  E-value=1.8e-05  Score=58.96  Aligned_cols=82  Identities=15%  Similarity=0.079  Sum_probs=60.7

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----Ccch
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNY   79 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~   79 (139)
                      .+.+....+|+++|+|++++..|++++...+..+++++.++|+...          ..   +||+|++-..     ....
T Consensus        71 ~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~---~fD~ii~~~~l~~~~~~~~  137 (219)
T TIGR02021        71 IELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CG---EFDIVVCMDVLIHYPASDM  137 (219)
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CC---CcCEEEEhhHHHhCCHHHH
Confidence            3445556789999999999999999998887766899999998764          24   8999986321     1123


Q ss_pred             HHHHHHHhhcccCCeEEEEe
Q 044253           80 RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ...+..+.+++++++++.+.
T Consensus       138 ~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       138 AKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             HHHHHHHHHHhCCCEEEEEC
Confidence            44567777788877777664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.04  E-value=1.5e-05  Score=65.96  Aligned_cols=77  Identities=12%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~~~~~   85 (139)
                      ..+|++||.|+.+....++.+..++..++|+++++|+.+.  ++      .+   +.|+|+...     ......+.+..
T Consensus       214 a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v--~l------pe---kvDIIVSElLGsfg~nEl~pE~Lda  282 (448)
T PF05185_consen  214 AVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV--EL------PE---KVDIIVSELLGSFGDNELSPECLDA  282 (448)
T ss_dssp             ESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS--CH------SS----EEEEEE---BTTBTTTSHHHHHHH
T ss_pred             CeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC--CC------CC---ceeEEEEeccCCccccccCHHHHHH
Confidence            4589999999999999888888999989999999999987  22      35   899999864     22233556777


Q ss_pred             HhhcccCCeEEEE
Q 044253           86 LMTLFKVGGIVIY   98 (139)
Q Consensus        86 ~~~lL~~gG~ii~   98 (139)
                      ..+.|+|||+++-
T Consensus       283 ~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  283 ADRFLKPDGIMIP  295 (448)
T ss_dssp             GGGGEEEEEEEES
T ss_pred             HHhhcCCCCEEeC
Confidence            7789999999983

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.04  E-value=1.1e-05  Score=62.76  Aligned_cols=79  Identities=15%  Similarity=0.221  Sum_probs=57.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHH-HcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----chHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIK-KVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----NYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~-~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----~~~~~~~~   85 (139)
                      +..|+++|+|+++.+.+++-++ ..|+..+++++++|+.+.-..+       .   .||+||+-+-..    .-.++++.
T Consensus       146 ~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~---~~DvV~lAalVg~~~e~K~~Il~~  215 (276)
T PF03059_consen  146 GARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------K---EYDVVFLAALVGMDAEPKEEILEH  215 (276)
T ss_dssp             --EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG--------------SEEEE-TT-S----SHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------c---cCCEEEEhhhcccccchHHHHHHH
Confidence            4578999999999999999988 6788889999999997653222       4   799999987443    56788999


Q ss_pred             HhhcccCCeEEEEe
Q 044253           86 LMTLFKVGGIVIYD   99 (139)
Q Consensus        86 ~~~lL~~gG~ii~~   99 (139)
                      +.+.+++|+.+++.
T Consensus       216 l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  216 LAKHMAPGARLVVR  229 (276)
T ss_dssp             HHHHS-TTSEEEEE
T ss_pred             HHhhCCCCcEEEEe
Confidence            99999999999986

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR00452 methyltransferase, putative

Probab=98.03  E-value=2e-05  Score=62.41  Aligned_cols=82  Identities=13%  Similarity=0.066  Sum_probs=59.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~   88 (139)
                      .+|+++|.|+.++..++..-+..+...++.+..+++.+. +.       ..   +||+||+-+.   ..+....+..+.+
T Consensus       145 ~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~---~FD~V~s~gvL~H~~dp~~~L~el~r  213 (314)
T TIGR00452       145 KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LY---AFDTVFSMGVLYHRKSPLEHLKQLKH  213 (314)
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CC---CcCEEEEcchhhccCCHHHHHHHHHH
Confidence            369999999999887654333333335788888887654 21       25   8999998763   2355678999999


Q ss_pred             cccCCeEEEEeCCCCC
Q 044253           89 LFKVGGIVIYDNTLWG  104 (139)
Q Consensus        89 lL~~gG~ii~~~~~~~  104 (139)
                      .|+|||.+++......
T Consensus       214 ~LkpGG~Lvletl~i~  229 (314)
T TIGR00452       214 QLVIKGELVLETLVID  229 (314)
T ss_pred             hcCCCCEEEEEEEEec
Confidence            9999999998765443

Known examples to date are restricted to the proteobacteria.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.03  E-value=1.7e-05  Score=61.40  Aligned_cols=73  Identities=8%  Similarity=0.035  Sum_probs=55.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+|+.||+|++.++.+|+.+...  ++ .+|++++..    . .+..     .+   +||+|++|..  ....+++.+.+
T Consensus        95 ~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~~-----~~---~fDVIIvDs~--~~~~fy~~~~~  159 (262)
T PRK00536         95 THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDLD-----IK---KYDLIICLQE--PDIHKIDGLKR  159 (262)
T ss_pred             CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhcc-----CC---cCCEEEEcCC--CChHHHHHHHH
Confidence            48999999999999999965432  34 568998862    2 2211     25   8999999963  33667788999


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .|++||+++..
T Consensus       160 ~L~~~Gi~v~Q  170 (262)
T PRK00536        160 MLKEDGVFISV  170 (262)
T ss_pred             hcCCCcEEEEC
Confidence            99999999974

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.03  E-value=1.4e-05  Score=56.24  Aligned_cols=78  Identities=18%  Similarity=0.203  Sum_probs=56.2

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc------chH
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD------NYR   80 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~------~~~   80 (139)
                      +|+++|+.+++++.+++.++..+..+++++++.+=......+.     ++   ++|+++.+-+      +.      ...
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~---~v~~~iFNLGYLPggDk~i~T~~~TTl   72 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EG---PVDAAIFNLGYLPGGDKSITTKPETTL   72 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S-----EEEEEEEESB-CTS-TTSB--HHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cC---CcCEEEEECCcCCCCCCCCCcCcHHHH
Confidence            6899999999999999999999998899999876554322221     24   7999998732      11      124


Q ss_pred             HHHHHHhhcccCCeEEEE
Q 044253           81 NYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~   98 (139)
                      ..++.++++|++||++++
T Consensus        73 ~Al~~al~lL~~gG~i~i   90 (140)
T PF06962_consen   73 KALEAALELLKPGGIITI   90 (140)
T ss_dssp             HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHhhccCCEEEE
Confidence            568888999999999986

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.02  E-value=2.2e-05  Score=58.82  Aligned_cols=79  Identities=14%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEE-EEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CCCcchHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKIN-LMESRALPALDQLLKDEKIHFFFENFDYAFVD---AHKDNYRNYRET   85 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~-~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~~~~~~~~~~~   85 (139)
                      ++.+||++|.++.|-++|.+.+.+..- .++. ++.+++... +++.     +.   +||.|+..   +...+..+.+..
T Consensus        98 p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~-----d~---s~DtVV~TlvLCSve~~~k~L~e  167 (252)
T KOG4300|consen   98 PINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA-----DG---SYDTVVCTLVLCSVEDPVKQLNE  167 (252)
T ss_pred             CCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc-----cC---CeeeEEEEEEEeccCCHHHHHHH
Confidence            456899999999999999999887744 4566 889988775 5554     56   99999865   345677888899


Q ss_pred             HhhcccCCeEEEE
Q 044253           86 LMTLFKVGGIVIY   98 (139)
Q Consensus        86 ~~~lL~~gG~ii~   98 (139)
                      +.++|+|||++++
T Consensus       168 ~~rlLRpgG~iif  180 (252)
T KOG4300|consen  168 VRRLLRPGGRIIF  180 (252)
T ss_pred             HHHhcCCCcEEEE
Confidence            9999999999986

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.02  E-value=2.4e-05  Score=63.38  Aligned_cols=78  Identities=18%  Similarity=0.143  Sum_probs=61.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      .+|++-|+|+++++.+++|++.+++.+ ++++.++|+...+...      ..   .||+|=+||- .....+++.+.+.+
T Consensus        75 ~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~------~~---~fD~IDlDPf-GSp~pfldsA~~~v  144 (377)
T PF02005_consen   75 DKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR------QE---RFDVIDLDPF-GSPAPFLDSALQAV  144 (377)
T ss_dssp             CEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS------TT----EEEEEE--S-S--HHHHHHHHHHE
T ss_pred             CEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc------cc---cCCEEEeCCC-CCccHhHHHHHHHh
Confidence            479999999999999999999999987 7999999999987421      46   8999999984 34667999999999


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +.||++.+.
T Consensus       145 ~~gGll~vT  153 (377)
T PF02005_consen  145 KDGGLLCVT  153 (377)
T ss_dssp             EEEEEEEEE
T ss_pred             hcCCEEEEe
Confidence            999999884

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PHA03412 putative methyltransferase; Provisional

Probab=98.00  E-value=3.2e-05  Score=59.00  Aligned_cols=99  Identities=15%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c-------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N-------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~-------   78 (139)
                      ..+|++||+|+.+++.|++|+.      ++.++++|+....  +      ..   +||+|+++|+..     +       
T Consensus        76 ~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~------~~---~FDlIIsNPPY~~~~~~d~~ar~~g  138 (241)
T PHA03412         76 PREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--F------DT---LFDMAISNPPFGKIKTSDFKGKYTG  138 (241)
T ss_pred             CcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--c------cC---CccEEEECCCCCCccccccCCcccc
Confidence            4589999999999999998852      4789999987542  2      35   899999998642     1       


Q ss_pred             ---hHHHHHHHhhcccCCeEEEEeCC---CCCcccccccccCchhhhhchHHHHHHHHH
Q 044253           79 ---YRNYRETLMTLFKVGGIVIYDNT---LWGGTVAMAEEQVPEILRSTRQPNWNLDKL  131 (139)
Q Consensus        79 ---~~~~~~~~~~lL~~gG~ii~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (139)
                         ...+++.+.+++++|+.|+-.++   .++|...-....     ....++..+|.+.
T Consensus       139 ~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~-----~~~~~~~~~~~~~  192 (241)
T PHA03412        139 AEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDE-----STTSSKCKKFLDE  192 (241)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeecc-----CcccHHHHHHHHh
Confidence               23466777787777776543333   334443332211     3455666666654

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.00  E-value=6.6e-05  Score=58.62  Aligned_cols=82  Identities=23%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ...++++|+++..+...++|+++.|.. ++.+.+.|+........     ..   .||.|++|++...            
T Consensus       110 ~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~-----~~---~fd~VlvDaPCSg~G~i~r~p~~~~  180 (283)
T PF01189_consen  110 KGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKP-----ES---KFDRVLVDAPCSGLGTIRRNPDIKW  180 (283)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHH-----TT---TEEEEEEECSCCCGGGTTTCTTHHH
T ss_pred             hhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccc-----cc---ccchhhcCCCccchhhhhhccchhh
Confidence            468999999999999999999999985 68888899988755432     24   5999999985431            


Q ss_pred             -------------hHHHHHHHhhcc----cCCeEEEEeCC
Q 044253           79 -------------YRNYRETLMTLF----KVGGIVIYDNT  101 (139)
Q Consensus        79 -------------~~~~~~~~~~lL----~~gG~ii~~~~  101 (139)
                                   -..+++.+.+++    +|||++++...
T Consensus       181 ~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  181 RRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             HE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             cccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence                         024567777899    99999997543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.00  E-value=1.9e-05  Score=58.25  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=60.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~~~   88 (139)
                      .+++++|+++.++..+++++.   ..++++++.+|+.+..  ..     .+   +||+|++..   .......+++.+.+
T Consensus        65 ~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~~-----~~---~~D~i~~~~~~~~~~~~~~~l~~~~~  131 (223)
T TIGR01934        65 GKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--FE-----DN---SFDAVTIAFGLRNVTDIQKALREMYR  131 (223)
T ss_pred             ceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--CC-----CC---cEEEEEEeeeeCCcccHHHHHHHHHH
Confidence            489999999999999999876   3357999999998752  11     35   899998754   23356678889999


Q ss_pred             cccCCeEEEEeCC
Q 044253           89 LFKVGGIVIYDNT  101 (139)
Q Consensus        89 lL~~gG~ii~~~~  101 (139)
                      +|+|||++++-+.
T Consensus       132 ~L~~gG~l~~~~~  144 (223)
T TIGR01934       132 VLKPGGRLVILEF  144 (223)
T ss_pred             HcCCCcEEEEEEe
Confidence            9999999987543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.99  E-value=1.6e-05  Score=63.56  Aligned_cols=75  Identities=11%  Similarity=-0.014  Sum_probs=58.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      ..+|+++|.|+++++.|+++...    .+++++.+|+.+. + +.     .+   +||+|++....   .+....++.+.
T Consensus       137 ~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~~-----~~---sFDvVIs~~~L~~~~d~~~~L~e~~  202 (340)
T PLN02490        137 AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-FP-----TD---YADRYVSAGSIEYWPDPQRGIKEAY  202 (340)
T ss_pred             CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-CC-----CC---ceeEEEEcChhhhCCCHHHHHHHHH
Confidence            46899999999999999998642    3588999998764 2 11     35   89999986532   24566889999


Q ss_pred             hcccCCeEEEEe
Q 044253           88 TLFKVGGIVIYD   99 (139)
Q Consensus        88 ~lL~~gG~ii~~   99 (139)
                      +.|+|||.+++-
T Consensus       203 rvLkPGG~LvIi  214 (340)
T PLN02490        203 RVLKIGGKACLI  214 (340)
T ss_pred             HhcCCCcEEEEE
Confidence            999999998764

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.97  E-value=6.3e-06  Score=62.05  Aligned_cols=72  Identities=15%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      ++.++++|.|++|++.|++.+      .++++..+|....-+        +.   +.|++|.++..   .+...++..+.
T Consensus        54 ~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~---~~dllfaNAvlqWlpdH~~ll~rL~  116 (257)
T COG4106          54 DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQ---PTDLLFANAVLQWLPDHPELLPRLV  116 (257)
T ss_pred             CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CC---ccchhhhhhhhhhccccHHHHHHHH
Confidence            678999999999999997654      468999999988732        46   89999999843   34567899999


Q ss_pred             hcccCCeEEEEe
Q 044253           88 TLFKVGGIVIYD   99 (139)
Q Consensus        88 ~lL~~gG~ii~~   99 (139)
                      ..|.|||++.+.
T Consensus       117 ~~L~Pgg~LAVQ  128 (257)
T COG4106         117 SQLAPGGVLAVQ  128 (257)
T ss_pred             HhhCCCceEEEE
Confidence            999999999873

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.95  E-value=2.8e-05  Score=62.79  Aligned_cols=76  Identities=14%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------chHH
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NYRN   81 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~~~   81 (139)
                      .++++|+|+.+++.|+.|.+.+|+.+.|++.++|+..+-..       .+   .+|+|+++|++.           -|..
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~---~~gvvI~NPPYGeRlg~~~~v~~LY~~  325 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LE---EYGVVISNPPYGERLGSEALVAKLYRE  325 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CC---cCCEEEeCCCcchhcCChhhHHHHHHH
Confidence            37799999999999999999999999999999999876322       14   799999999753           2344


Q ss_pred             HHHHHhhcccCCeEEEE
Q 044253           82 YRETLMTLFKVGGIVIY   98 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~   98 (139)
                      +-+.+.+.++.-+..++
T Consensus       326 fg~~lk~~~~~ws~~v~  342 (381)
T COG0116         326 FGRTLKRLLAGWSRYVF  342 (381)
T ss_pred             HHHHHHHHhcCCceEEE
Confidence            44555567776666665

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.93  E-value=2.7e-05  Score=61.85  Aligned_cols=63  Identities=13%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKV-EVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ...+.+++++|+|+.+++.|++|++.+ ++.+++++++ .+.......+...   .+   .||+|+++|+.
T Consensus       135 ~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~---~~---~fDlivcNPPf  199 (321)
T PRK11727        135 HEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHK---NE---RFDATLCNPPF  199 (321)
T ss_pred             hCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccccc---CC---ceEEEEeCCCC
Confidence            334678999999999999999999999 7988999975 4444443322111   35   89999999874

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.92  E-value=2.6e-05  Score=57.92  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=59.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      ..+++++|+++++++.+++++.     ++++++.+|+.+..  ..     .+   +||+|++....   .+....++.+.
T Consensus        58 ~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~~-----~~---~fD~vi~~~~l~~~~~~~~~l~~~~  122 (240)
T TIGR02072        58 QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--LE-----DS---SFDLIVSNLALQWCDDLSQALSELA  122 (240)
T ss_pred             CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--CC-----CC---ceeEEEEhhhhhhccCHHHHHHHHH
Confidence            3568999999999999988654     36889999987642  11     35   89999987532   24567888999


Q ss_pred             hcccCCeEEEEeCC
Q 044253           88 TLFKVGGIVIYDNT  101 (139)
Q Consensus        88 ~lL~~gG~ii~~~~  101 (139)
                      ++|++||.+++...
T Consensus       123 ~~L~~~G~l~~~~~  136 (240)
T TIGR02072       123 RVLKPGGLLAFSTF  136 (240)
T ss_pred             HHcCCCcEEEEEeC
Confidence            99999999998643

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.92  E-value=6e-05  Score=60.81  Aligned_cols=79  Identities=16%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             cceeEEeCCccHHHHHHHHH--HH---cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------c
Q 044253           12 YFIVAIDVSRESSETGLPII--KK---VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------N   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~--~~---~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~   78 (139)
                      .+|+.||.||+|++.++++.  +.   ..+ +.|++++..|+..+++..      .+   .||.|++|-+-+       -
T Consensus       314 ~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a------~~---~fD~vIVDl~DP~tps~~rl  384 (508)
T COG4262         314 EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA------AD---MFDVVIVDLPDPSTPSIGRL  384 (508)
T ss_pred             ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh------cc---cccEEEEeCCCCCCcchhhh
Confidence            47999999999999999553  22   233 568999999999999765      35   899999985321       1


Q ss_pred             h-HHHHHHHhhcccCCeEEEEe
Q 044253           79 Y-RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~-~~~~~~~~~lL~~gG~ii~~   99 (139)
                      | .++...+.+.|+++|.+++.
T Consensus       385 YS~eFY~ll~~~l~e~Gl~VvQ  406 (508)
T COG4262         385 YSVEFYRLLSRHLAETGLMVVQ  406 (508)
T ss_pred             hhHHHHHHHHHhcCcCceEEEe
Confidence            3 34555667899999999874

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.91  E-value=4.2e-05  Score=56.60  Aligned_cols=85  Identities=15%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CC-Cc----
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD---AH-KD----   77 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~-~~----   77 (139)
                      +.......+++||++...+..|.+.+...++ .++.++++|+...+..+..    .+   ++|.|++.   |. +.    
T Consensus        36 A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~----~~---~v~~i~i~FPDPWpK~rH~k  107 (195)
T PF02390_consen   36 AKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFP----PG---SVDRIYINFPDPWPKKRHHK  107 (195)
T ss_dssp             HHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHST----TT---SEEEEEEES-----SGGGGG
T ss_pred             HHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhccc----CC---chheEEEeCCCCCcccchhh
Confidence            3344467899999999999999999999998 5899999999998877642    35   89999985   31 11    


Q ss_pred             ---chHHHHHHHhhcccCCeEEEE
Q 044253           78 ---NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 ---~~~~~~~~~~~lL~~gG~ii~   98 (139)
                         ....+++.+.+.|++||.|.+
T Consensus       108 rRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen  108 RRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             GSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcCCchHHHHHHHHcCCCCEEEE
Confidence               136788999999999999965

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.89  E-value=6.4e-05  Score=55.96  Aligned_cols=81  Identities=15%  Similarity=0.018  Sum_probs=56.4

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cch
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNY   79 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~   79 (139)
                      ...+..+.+|+++|+|+++++.|++++...+..+++++..+|..    ..      .+   +||+|++....     ...
T Consensus        79 ~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~---~fD~v~~~~~l~~~~~~~~  145 (230)
T PRK07580         79 IPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LG---RFDTVVCLDVLIHYPQEDA  145 (230)
T ss_pred             HHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cC---CcCEEEEcchhhcCCHHHH
Confidence            34445567899999999999999999988887678999999932    11      35   89999975421     123


Q ss_pred             HHHHHHHhhcccCCeEEEE
Q 044253           80 RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~   98 (139)
                      ...++.+.++++.++++.+
T Consensus       146 ~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        146 ARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             HHHHHHHHhhcCCeEEEEE
Confidence            3455566566554444443

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.88  E-value=1.3e-05  Score=61.92  Aligned_cols=80  Identities=18%  Similarity=0.229  Sum_probs=57.1

Q ss_pred             hcceeEEeCCccHHHHHHHHH------HHc--------------------CCCCcEEEEeCChHHHHHhhHHhhhcccCC
Q 044253           11 IYFIVAIDVSRESSETGLPII------KKV--------------------EVDLKINLMESRALPALDQLLKDEKIHFFF   64 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~------~~~--------------------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~   64 (139)
                      ..+|+++|+|+++++.|++.+      +..                    ++.+++++.++|+.+...  .     .+  
T Consensus       132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~--~-----~~--  202 (264)
T smart00138      132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP--P-----LG--  202 (264)
T ss_pred             CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC--c-----cC--
Confidence            468999999999999999853      110                    122468888888876421  1     35  


Q ss_pred             CceeEEEEcCC-----CcchHHHHHHHhhcccCCeEEEEeC
Q 044253           65 ENFDYAFVDAH-----KDNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        65 ~~fD~If~D~~-----~~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                       +||+|++--.     .......++.+.+.|+|||++++..
T Consensus       203 -~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      203 -DFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             -CCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence             8999998431     1223467888999999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.87  E-value=2.7e-05  Score=60.48  Aligned_cols=87  Identities=15%  Similarity=0.131  Sum_probs=63.8

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe----CChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME----SRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----   77 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~----~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----   77 (139)
                      .+...-..|++||+|+.++..|.+|...+++.+++.+++    +|...-.+.+      .+   ++|+++.+|++-    
T Consensus       167 l~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~------~~---~~dllvsNPPYI~~dD  237 (328)
T KOG2904|consen  167 LHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLL------EG---KIDLLVSNPPYIRKDD  237 (328)
T ss_pred             HhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccc------cC---ceeEEecCCCcccccc
Confidence            334446789999999999999999999999999999984    4444332221      35   899999987531    


Q ss_pred             ----------------------c---hHHHHHHHhhcccCCeEEEEeCC
Q 044253           78 ----------------------N---YRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        78 ----------------------~---~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                                            .   +..++..+-++|++||.+.++-.
T Consensus       238 ~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  238 NRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             hhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence                                  0   12344455589999999988755

>PHA03411 putative methyltransferase; Provisional

Probab=97.86  E-value=4.1e-05  Score=59.61  Aligned_cols=49  Identities=14%  Similarity=0.167  Sum_probs=40.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ..+|+++|+|+.+++.+++++      .+++++++|+.++..        ..   +||+|+++++.
T Consensus        88 ~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~---kFDlIIsNPPF  136 (279)
T PHA03411         88 PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NE---KFDVVISNPPF  136 (279)
T ss_pred             CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cC---CCcEEEEcCCc
Confidence            468999999999999999874      268999999987642        35   89999999854

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.79  E-value=3e-05  Score=58.78  Aligned_cols=90  Identities=9%  Similarity=0.017  Sum_probs=61.1

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHH------H-----cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIK------K-----VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~------~-----~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ..|..+.+|+++|+|+.+++.+.+...      .     .--...++++++|.++. +.....   ..   +||+|+--+
T Consensus        60 ~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l-~~~~~~---~~---~fD~VyDra  132 (226)
T PRK13256         60 FFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL-PKIANN---LP---VFDIWYDRG  132 (226)
T ss_pred             HHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC-Cccccc---cC---CcCeeeeeh
Confidence            456678899999999999999865210      0     00024699999999986 211000   24   799987543


Q ss_pred             -----CCcchHHHHHHHhhcccCCeEEEEeCCC
Q 044253           75 -----HKDNYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        75 -----~~~~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                           +...-..|.+.+..+|+|||.++.-...
T Consensus       133 ~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        133 AYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             hHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence                 2233467888999999999998875443

>TIGR03438 probable methyltransferase

Probab=97.79  E-value=0.00016  Score=56.80  Aligned_cols=88  Identities=13%  Similarity=0.029  Sum_probs=58.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~   85 (139)
                      ..+++++|+|++|++.|++++....-..++..+++|+.+.++... +.. ..   ...+++++....     ....+++.
T Consensus        88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~-~~~-~~---~~~~~~~gs~~~~~~~~e~~~~L~~  162 (301)
T TIGR03438        88 PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP-EPA-AG---RRLGFFPGSTIGNFTPEEAVAFLRR  162 (301)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc-ccc-cC---CeEEEEecccccCCCHHHHHHHHHH
Confidence            578999999999999999998754322357889999987543221 000 01   233455554221     23457888


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.|+|||.+++.--+.
T Consensus       163 i~~~L~pgG~~lig~d~~  180 (301)
T TIGR03438       163 IRQLLGPGGGLLIGVDLV  180 (301)
T ss_pred             HHHhcCCCCEEEEeccCC
Confidence            889999999999864444

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.75  E-value=8.1e-05  Score=64.74  Aligned_cols=56  Identities=7%  Similarity=-0.043  Sum_probs=47.7

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +++++|+|+++++.|++|+..+|+.+++++.++|+.+......     .+   +||+|+++|++
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-----~~---~~d~IvtNPPY  313 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-----KG---PTGLVISNPPY  313 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-----cC---CCCEEEECCCC
Confidence            6999999999999999999999998889999999988632110     24   69999999975

>PTZ00146 fibrillarin; Provisional

Probab=97.74  E-value=0.00012  Score=57.42  Aligned_cols=78  Identities=18%  Similarity=0.063  Sum_probs=52.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH-HHHHHHhhcc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR-NYRETLMTLF   90 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~~~~~~~~lL   90 (139)
                      .+|++||+++++.+...+.....   .++.++.+|+..... +...   .+   +||+||+|....+.. .++..+...|
T Consensus       158 G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~~~---~~---~vDvV~~Dva~pdq~~il~~na~r~L  227 (293)
T PTZ00146        158 GVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YRML---VP---MVDVIFADVAQPDQARIVALNAQYFL  227 (293)
T ss_pred             CEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hhcc---cC---CCCEEEEeCCCcchHHHHHHHHHHhc
Confidence            47999999988665554443322   468899999864311 1100   24   799999998644333 3445677899


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +|||.+++.
T Consensus       228 KpGG~~vI~  236 (293)
T PTZ00146        228 KNGGHFIIS  236 (293)
T ss_pred             cCCCEEEEE
Confidence            999999983

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=97.74  E-value=0.00036  Score=52.39  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=67.0

Q ss_pred             chhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChH-HHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253            4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRAL-PALDQLLKDEKIHFFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus         4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~-~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~   80 (139)
                      ||+.|.+  +.++++|-.+.+.+...++.+...|..+.++|+.++.. +.++.+       .   ..|++++|+...++.
T Consensus        60 aLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-------~---~iDF~vVDc~~~d~~  129 (218)
T PF07279_consen   60 ALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-------K---GIDFVVVDCKREDFA  129 (218)
T ss_pred             HHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-------c---CCCEEEEeCCchhHH
Confidence            4444444  67899999999999999999998998878899999854 566654       4   699999999877777


Q ss_pred             -HHHHHHhhcccCCeEEEEeCCCC
Q 044253           81 -NYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        81 -~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                       .+|+.+ ++=..|.+++..|...
T Consensus       130 ~~vl~~~-~~~~~GaVVV~~Na~~  152 (218)
T PF07279_consen  130 ARVLRAA-KLSPRGAVVVCYNAFS  152 (218)
T ss_pred             HHHHHHh-ccCCCceEEEEecccc
Confidence             766653 3334566666677755

The function of this family is unknown.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.72  E-value=0.00028  Score=51.88  Aligned_cols=78  Identities=13%  Similarity=0.152  Sum_probs=63.1

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      ++...+++.+|.+..-+...+.-....|+. +++++++.+.+  ...      ..   +||+|++-+-. ....+++.+.
T Consensus        69 ~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~~------~~---~fd~v~aRAv~-~l~~l~~~~~  135 (184)
T PF02527_consen   69 ARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PEY------RE---SFDVVTARAVA-PLDKLLELAR  135 (184)
T ss_dssp             H-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TTT------TT----EEEEEEESSS-SHHHHHHHHG
T ss_pred             hCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--ccc------CC---CccEEEeehhc-CHHHHHHHHH
Confidence            345678999999999999999999999995 79999999988  121      36   89999998854 4677889999


Q ss_pred             hcccCCeEEEE
Q 044253           88 TLFKVGGIVIY   98 (139)
Q Consensus        88 ~lL~~gG~ii~   98 (139)
                      +++++||.+++
T Consensus       136 ~~l~~~G~~l~  146 (184)
T PF02527_consen  136 PLLKPGGRLLA  146 (184)
T ss_dssp             GGEEEEEEEEE
T ss_pred             HhcCCCCEEEE
Confidence            99999999885

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.70  E-value=5.3e-05  Score=55.83  Aligned_cols=90  Identities=17%  Similarity=0.246  Sum_probs=65.6

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEE---------EcC
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAF---------VDA   74 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If---------~D~   74 (139)
                      .|...-.....++||-|+++++.|+...+..++.+.|++.+.|....  ...     ..   +||+|.         +.|
T Consensus        84 ~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~-----~~---qfdlvlDKGT~DAisLs~  153 (227)
T KOG1271|consen   84 QLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL-----SG---QFDLVLDKGTLDAISLSP  153 (227)
T ss_pred             HHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc-----cc---ceeEEeecCceeeeecCC
Confidence            34444445569999999999999999999999988899999998764  221     24   677775         222


Q ss_pred             C--CcchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           75 H--KDNYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        75 ~--~~~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      .  .....-|+..+.++|+|||++++....|
T Consensus       154 d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  154 DGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             CCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            2  1222446778889999999999865555

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.70  E-value=3.7e-05  Score=57.95  Aligned_cols=85  Identities=18%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHH------cC-----CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKK------VE-----VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD   73 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~------~g-----~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D   73 (139)
                      +..|..+.+|+++|+|+.+++.+.+.-..      .+     -.++|+++++|.++.-+..      .+   +||+|+=-
T Consensus        53 ~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~------~g---~fD~iyDr  123 (218)
T PF05724_consen   53 LWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED------VG---KFDLIYDR  123 (218)
T ss_dssp             HHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC------HH---SEEEEEEC
T ss_pred             HHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh------cC---CceEEEEe
Confidence            34566788999999999999998432111      01     0246899999999853221      24   79999843


Q ss_pred             C-----CCcchHHHHHHHhhcccCCeEEEE
Q 044253           74 A-----HKDNYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        74 ~-----~~~~~~~~~~~~~~lL~~gG~ii~   98 (139)
                      +     +...-.+|.+.+..+|+|||.+++
T Consensus       124 ~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen  124 TFLCALPPEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             SSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence            2     223456788999999999999543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.66  E-value=0.0001  Score=55.07  Aligned_cols=55  Identities=16%  Similarity=0.139  Sum_probs=41.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ...+|+++|+++.-++.|+++++..|+.++++++.+|.++.++.       .+   ..|.|++-+
T Consensus        20 ~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e---~~d~ivIAG   74 (205)
T PF04816_consen   20 KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GE---DVDTIVIAG   74 (205)
T ss_dssp             SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG------EEEEEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CC---CCCEEEEec
Confidence            44589999999999999999999999999999999999987753       23   478888753

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.59  E-value=0.00061  Score=51.72  Aligned_cols=80  Identities=18%  Similarity=0.316  Sum_probs=66.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE---cCCCc--------ch
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV---DAHKD--------NY   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~---D~~~~--------~~   79 (139)
                      ....++||+....+..|.+.+.+.++. ++.++++||...+..+..    ++   +.|-|++   ||...        -.
T Consensus        72 ~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~---sl~~I~i~FPDPWpKkRH~KRRl~~  143 (227)
T COG0220          72 EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DG---SLDKIYINFPDPWPKKRHHKRRLTQ  143 (227)
T ss_pred             CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CC---CeeEEEEECCCCCCCccccccccCC
Confidence            346899999999999999999999995 899999999999987643    35   7888887   45211        24


Q ss_pred             HHHHHHHhhcccCCeEEEE
Q 044253           80 RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~   98 (139)
                      ..+++.+.+.|++||.|.+
T Consensus       144 ~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         144 PEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             HHHHHHHHHHccCCCEEEE
Confidence            6788899999999999976

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.56  E-value=0.00011  Score=54.92  Aligned_cols=120  Identities=13%  Similarity=0.153  Sum_probs=59.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETL   86 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~   86 (139)
                      ..+|++||++....+...  ++..++.++|++++||..+.  +.+.....+ ..   ...+|+.|+.+  .+...-++..
T Consensus        60 ~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~-~~---~~vlVilDs~H~~~hvl~eL~~y  133 (206)
T PF04989_consen   60 KGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDPEIVDQVRELAS-PP---HPVLVILDSSHTHEHVLAELEAY  133 (206)
T ss_dssp             --EEEEEES-GTT--S-G--GGG----TTEEEEES-SSSTHHHHTSGSS--------SSEEEEESS----SSHHHHHHHH
T ss_pred             CceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCHHHHHHHHHhhc-cC---CceEEEECCCccHHHHHHHHHHh
Confidence            368999999766554332  33456668999999997643  222211000 12   46699999963  3456667888


Q ss_pred             hhcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           87 MTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      .+++++|+++|+.|..+..........-|  ............++++.+|+|
T Consensus       134 ~plv~~G~Y~IVeDt~~~~~~~~~~~~~~--w~~g~~p~~av~~fL~~~~~f  183 (206)
T PF04989_consen  134 APLVSPGSYLIVEDTIIEDWPESWFPDRP--WGPGNNPKTAVKEFLAEHPDF  183 (206)
T ss_dssp             HHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTE
T ss_pred             CccCCCCCEEEEEeccccccccccccccc--hhhhhHHHHHHHHHHHHCCCc
Confidence            89999999999999887664444332211  111222344455556666654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=0.00015  Score=60.38  Aligned_cols=88  Identities=11%  Similarity=0.098  Sum_probs=64.7

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCcee-EEEEcCCCcchH-
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFD-YAFVDAHKDNYR-   80 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD-~If~D~~~~~~~-   80 (139)
                      |+|.+|++..+|++||++++++..|++|...+|+. +.+|++|.+.+.++.+....  ..   +=+ ++++|++..... 
T Consensus       397 iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~--~~---~~~~v~iiDPpR~Glh~  470 (534)
T KOG2187|consen  397 IGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPC--CD---SETLVAIIDPPRKGLHM  470 (534)
T ss_pred             eehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccC--CC---CCceEEEECCCcccccH
Confidence            78999999999999999999999999999999995 79999999988877664220  11   334 788999765543 


Q ss_pred             HHHHHHhhcccCCeEE
Q 044253           81 NYRETLMTLFKVGGIV   96 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~i   96 (139)
                      .++..+...-++--.+
T Consensus       471 ~~ik~l~~~~~~~rlv  486 (534)
T KOG2187|consen  471 KVIKALRAYKNPRRLV  486 (534)
T ss_pred             HHHHHHHhccCccceE
Confidence            3444444433333333

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.53  E-value=0.00016  Score=55.12  Aligned_cols=80  Identities=16%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNY   82 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~   82 (139)
                      ++.+....+|+.+|+|+..++..++..++.|+.  ++.++.|.+..|+.-.     .+   +||++|.||+..  ...-+
T Consensus        61 ~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~---~fD~f~TDPPyT~~G~~LF  130 (243)
T PF01861_consen   61 LALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RG---KFDVFFTDPPYTPEGLKLF  130 (243)
T ss_dssp             HHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS----BSEEEE---SSHHHHHHH
T ss_pred             HHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hc---CCCEEEeCCCCCHHHHHHH
Confidence            334444678999999999999999999999985  9999999999887521     24   899999999753  23445


Q ss_pred             HHHHhhcccCCe
Q 044253           83 RETLMTLFKVGG   94 (139)
Q Consensus        83 ~~~~~~lL~~gG   94 (139)
                      +......|+..|
T Consensus       131 lsRgi~~Lk~~g  142 (243)
T PF01861_consen  131 LSRGIEALKGEG  142 (243)
T ss_dssp             HHHHHHTB-STT
T ss_pred             HHHHHHHhCCCC
Confidence            666777777766

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.52  E-value=0.00017  Score=50.29  Aligned_cols=75  Identities=15%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRE   84 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~   84 (139)
                      +..+.+++++|+++.+++.         .  +.....-+.... ...      .+   +||+|++...   ..+...+++
T Consensus        41 ~~~~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~-~~~------~~---~fD~i~~~~~l~~~~d~~~~l~   99 (161)
T PF13489_consen   41 AKRGFEVTGVDISPQMIEK---------R--NVVFDNFDAQDP-PFP------DG---SFDLIICNDVLEHLPDPEEFLK   99 (161)
T ss_dssp             HHTTSEEEEEESSHHHHHH---------T--TSEEEEEECHTH-HCH------SS---SEEEEEEESSGGGSSHHHHHHH
T ss_pred             HHhCCEEEEEECCHHHHhh---------h--hhhhhhhhhhhh-hcc------cc---chhhHhhHHHHhhcccHHHHHH
Confidence            4456699999999999998         1  122222222221 111      46   8999998753   234677899


Q ss_pred             HHhhcccCCeEEEEeCCCC
Q 044253           85 TLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~  103 (139)
                      .+.++|+|||++++.....
T Consensus       100 ~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen  100 ELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             HHHHCEEEEEEEEEEEEBT
T ss_pred             HHHHhcCCCCEEEEEEcCC
Confidence            9999999999999876553

...

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.45  E-value=0.00044  Score=54.84  Aligned_cols=81  Identities=10%  Similarity=-0.013  Sum_probs=53.9

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      ++..+..+.+|+++|+|++|++.|+++....+.    ..++++..+|+...          .+   +||+|++-....++
T Consensus       159 a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~~---~fD~Vv~~~vL~H~  225 (315)
T PLN02585        159 AIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------SG---KYDTVTCLDVLIHY  225 (315)
T ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------CC---CcCEEEEcCEEEec
Confidence            345556678999999999999999999876522    24688998887542          35   89999864321112


Q ss_pred             -----HHHHHHHhhcccCCeEEEE
Q 044253           80 -----RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        80 -----~~~~~~~~~lL~~gG~ii~   98 (139)
                           ...+..+. .+.+||+++.
T Consensus       226 p~~~~~~ll~~l~-~l~~g~liIs  248 (315)
T PLN02585        226 PQDKADGMIAHLA-SLAEKRLIIS  248 (315)
T ss_pred             CHHHHHHHHHHHH-hhcCCEEEEE
Confidence                 22344444 4567777664

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.45  E-value=0.00065  Score=53.30  Aligned_cols=91  Identities=20%  Similarity=0.181  Sum_probs=70.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------hHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------YRNYRET   85 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------~~~~~~~   85 (139)
                      .+|...|.|+..++..++.++..|+.+-++|.++|+++.- .+..-   ..   ..+++++.+-...      ....+..
T Consensus       162 ~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~l---~p---~P~l~iVsGL~ElF~Dn~lv~~sl~g  234 (311)
T PF12147_consen  162 DSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAAL---DP---APTLAIVSGLYELFPDNDLVRRSLAG  234 (311)
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhhcc---CC---CCCEEEEecchhhCCcHHHHHHHHHH
Confidence            5789999999999999999999999887899999999862 22211   23   6899999874332      2334666


Q ss_pred             HhhcccCCeEEEEeCCCCCccccc
Q 044253           86 LMTLFKVGGIVIYDNTLWGGTVAM  109 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~~~~~~~  109 (139)
                      +...+.|||++|+.+--||..+-+
T Consensus       235 l~~al~pgG~lIyTgQPwHPQle~  258 (311)
T PF12147_consen  235 LARALEPGGYLIYTGQPWHPQLEM  258 (311)
T ss_pred             HHHHhCCCcEEEEcCCCCCcchHH
Confidence            778999999999988888765543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=97.40  E-value=0.00026  Score=54.38  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHHHHHhhcccCCeEEEEeC
Q 044253           23 SSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        23 ~~~~Ar~n~~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ..+..++|+...|+ .++++++.|...+.++...     .+   ++-++.+|++. ......++.+.+.|.+||+|++|+
T Consensus       141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p-----~~---~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD  212 (248)
T PF05711_consen  141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP-----IE---RIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD  212 (248)
T ss_dssp             HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T-----T-----EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CHHHHHHHHHHcCCCcccEEEECCcchhhhccCC-----Cc---cEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            46677788887776 5689999999999887543     35   78899999863 223456788889999999999999


Q ss_pred             CCC
Q 044253          101 TLW  103 (139)
Q Consensus       101 ~~~  103 (139)
                      ...
T Consensus       213 Y~~  215 (248)
T PF05711_consen  213 YGH  215 (248)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            665

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.39  E-value=0.00014  Score=56.17  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=50.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+++++|+|+++++.|+++.      .++++..+|+.+. + +.     ++   +||+|+.-...    ..++.+.+.|+
T Consensus       113 ~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~~-----~~---sfD~I~~~~~~----~~~~e~~rvLk  172 (272)
T PRK11088        113 MQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-FA-----DQ---SLDAIIRIYAP----CKAEELARVVK  172 (272)
T ss_pred             CeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-Cc-----CC---ceeEEEEecCC----CCHHHHHhhcc
Confidence            36899999999999998753      3578899988753 2 21     35   89999974321    23567788999


Q ss_pred             CCeEEEEe
Q 044253           92 VGGIVIYD   99 (139)
Q Consensus        92 ~gG~ii~~   99 (139)
                      |||++++-
T Consensus       173 pgG~li~~  180 (272)
T PRK11088        173 PGGIVITV  180 (272)
T ss_pred             CCCEEEEE
Confidence            99999863

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.38  E-value=0.00011  Score=54.50  Aligned_cols=82  Identities=7%  Similarity=0.065  Sum_probs=62.5

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---C--Ccc
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---H--KDN   78 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~--~~~   78 (139)
                      +.-+|.+..+|++||.||.....|++|++..|+ ++++++.||++.+  .+       +   ..|.|++.-   .  ...
T Consensus        47 s~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y--~f-------e---~ADvvicEmlDTaLi~E~  113 (252)
T COG4076          47 SVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDY--DF-------E---NADVVICEMLDTALIEEK  113 (252)
T ss_pred             HHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccc--cc-------c---ccceeHHHHhhHHhhccc
Confidence            334555677999999999999999999988887 5899999999987  22       3   688888642   1  111


Q ss_pred             hHHHHHHHhhcccCCeEEEE
Q 044253           79 YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~   98 (139)
                      ....+..+++.|+.++.++-
T Consensus       114 qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         114 QVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             ccHHHHHHHHHhhcCCcccc
Confidence            23467778889999998874

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.38  E-value=0.0014  Score=51.62  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=63.7

Q ss_pred             ceeEEeCCccHHHHHHHHHHH--cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHH
Q 044253           13 FIVAIDVSRESSETGLPIIKK--VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNY   82 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~--~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~   82 (139)
                      .+..+|++...++..++.+..  .|+ ..++.++-||...+++..+     +.   +||+|++|..-.       .-..+
T Consensus       147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----~~---~~dVii~dssdpvgpa~~lf~~~~  218 (337)
T KOG1562|consen  147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----EN---PFDVIITDSSDPVGPACALFQKPY  218 (337)
T ss_pred             ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----cC---CceEEEEecCCccchHHHHHHHHH
Confidence            588999999999999999875  466 4689999999999988764     46   899999987422       12457


Q ss_pred             HHHHhhcccCCeEEEE
Q 044253           83 RETLMTLFKVGGIVIY   98 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~   98 (139)
                      ++.+.+.|++||+++.
T Consensus       219 ~~~v~~aLk~dgv~~~  234 (337)
T KOG1562|consen  219 FGLVLDALKGDGVVCT  234 (337)
T ss_pred             HHHHHHhhCCCcEEEE
Confidence            8888899999999975

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.38  E-value=0.00027  Score=53.18  Aligned_cols=105  Identities=10%  Similarity=0.074  Sum_probs=67.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~~~~~~   86 (139)
                      .+|..||..+..++.|++.+... .....++++...+++-+.       ..   +||+|.+-=     .-.+...+++.+
T Consensus        79 ~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-------~~---~YDlIW~QW~lghLTD~dlv~fL~RC  147 (218)
T PF05891_consen   79 DEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-------EG---KYDLIWIQWCLGHLTDEDLVAFLKRC  147 (218)
T ss_dssp             SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----------TT----EEEEEEES-GGGS-HHHHHHHHHHH
T ss_pred             CEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-------CC---cEeEEEehHhhccCCHHHHHHHHHHH
Confidence            47999999999999999887652 224578888888887543       35   899999731     112456788999


Q ss_pred             hhcccCCeEEEEe-CCCCCcc-cccccccCchhhhhchHHHHHHHHHHh
Q 044253           87 MTLFKVGGIVIYD-NTLWGGT-VAMAEEQVPEILRSTRQPNWNLDKLFA  133 (139)
Q Consensus        87 ~~lL~~gG~ii~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (139)
                      ...|+|+|+|++. |+.-.+. ...+. .     ...||....|.+.++
T Consensus       148 k~~L~~~G~IvvKEN~~~~~~~~~D~~-D-----sSvTRs~~~~~~lF~  190 (218)
T PF05891_consen  148 KQALKPNGVIVVKENVSSSGFDEFDEE-D-----SSVTRSDEHFRELFK  190 (218)
T ss_dssp             HHHEEEEEEEEEEEEEESSSEEEEETT-T-----TEEEEEHHHHHHHHH
T ss_pred             HHhCcCCcEEEEEecCCCCCCcccCCc-c-----CeeecCHHHHHHHHH
Confidence            9999999999996 5555564 44433 2     244455555554443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.31  E-value=0.00091  Score=49.75  Aligned_cols=73  Identities=11%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~   85 (139)
                      +.++++||+|+++++.|++++      .+++++++|+.+.   ..     +.   +||+|++.....     .....++.
T Consensus        67 ~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~---~~-----~~---sfD~V~~~~vL~hl~p~~~~~~l~e  129 (204)
T TIGR03587        67 FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDP---FK-----DN---FFDLVLTKGVLIHINPDNLPTAYRE  129 (204)
T ss_pred             CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCC---CC-----CC---CEEEEEECChhhhCCHHHHHHHHHH
Confidence            568999999999999999864      2467888887762   11     46   899999876321     23445666


Q ss_pred             HhhcccCCeEEEEeCCC
Q 044253           86 LMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~  102 (139)
                      +.+.+  ++.+++.+..
T Consensus       130 l~r~~--~~~v~i~e~~  144 (204)
T TIGR03587       130 LYRCS--NRYILIAEYY  144 (204)
T ss_pred             HHhhc--CcEEEEEEee
Confidence            66665  4566655543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00024  Score=53.31  Aligned_cols=77  Identities=14%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcC--------C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVE--------V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g--------~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      ..+++||.-++.++.+++|+.+.-        + ..+..++.||.+...+.       ..   +||.|++.+...   +.
T Consensus       109 ~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-------~a---~YDaIhvGAaa~---~~  175 (237)
T KOG1661|consen  109 GNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-------QA---PYDAIHVGAAAS---EL  175 (237)
T ss_pred             ccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-------cC---CcceEEEccCcc---cc
Confidence            345899999999999999987653        1 24688899999887443       35   899999997543   34


Q ss_pred             HHHHhhcccCCeEEEEeCC
Q 044253           83 RETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~  101 (139)
                      .+.+++.|++||.+++--.
T Consensus       176 pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  176 PQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             HHHHHHhhccCCeEEEeec
Confidence            5577889999999987433

>PRK13699 putative methylase; Provisional

Probab=97.28  E-value=0.00049  Score=52.09  Aligned_cols=51  Identities=6%  Similarity=0.145  Sum_probs=40.4

Q ss_pred             EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------------hHHHHHHHhhcccCCeEEEE
Q 044253           40 INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        40 i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------------~~~~~~~~~~lL~~gG~ii~   98 (139)
                      +++++||+.+.++.+.     ++   ++|+||.||++..                  ...++..+.+.|+|||.+++
T Consensus         2 ~~l~~gD~le~l~~lp-----d~---SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP-----DN---AVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC-----cc---ccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4789999999998875     56   9999999997630                  12456677789999999875

>PRK11524 putative methyltransferase; Provisional

Probab=97.25  E-value=0.00076  Score=52.52  Aligned_cols=54  Identities=15%  Similarity=0.224  Sum_probs=41.9

Q ss_pred             CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------------h----HHHHHHHhhcccCCeEEEE
Q 044253           38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------------Y----RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------------~----~~~~~~~~~lL~~gG~ii~   98 (139)
                      ...+++++|+.+.+..+.     .+   +||+||+||+...               |    ..++..+.++|++||.+++
T Consensus         7 ~~~~i~~gD~~~~l~~l~-----~~---siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i   78 (284)
T PRK11524          7 EAKTIIHGDALTELKKIP-----SE---SVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI   78 (284)
T ss_pred             CCCEEEeccHHHHHHhcc-----cC---cccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence            356899999999987764     46   8999999997421               1    2466778899999999986


Q ss_pred             e
Q 044253           99 D   99 (139)
Q Consensus        99 ~   99 (139)
                      .
T Consensus        79 ~   79 (284)
T PRK11524         79 M   79 (284)
T ss_pred             E
Confidence            4

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.24  E-value=0.001  Score=54.50  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      ..|++.|.+...+...+.|+.+.|+. +..+...|..++-....     ..   +||.|++|++...             
T Consensus       267 G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~-----~~---~fDRVLLDAPCSGtgvi~K~~~vkt~  337 (460)
T KOG1122|consen  267 GVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF-----PG---SFDRVLLDAPCSGTGVISKDQSVKTN  337 (460)
T ss_pred             ceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc-----Cc---ccceeeecCCCCCCcccccccccccc
Confidence            35899999999999999999999984 67777888876521110     23   7999999986532             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                                  -.+++.++.+++++||+|++..
T Consensus       338 k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  338 KTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence                        1346677889999999999743

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.24  E-value=0.0011  Score=49.49  Aligned_cols=72  Identities=11%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCc-------c----
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKD-------N----   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~-------~----   78 (139)
                      .+|++||+++.           .+. .+++++++|+.+.  ++++..... ..   +||+|++|....       +    
T Consensus        77 ~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~-~~---~~D~V~S~~~~~~~g~~~~d~~~~  140 (209)
T PRK11188         77 GRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLERVG-DS---KVQVVMSDMAPNMSGTPAVDIPRA  140 (209)
T ss_pred             ceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHHhC-CC---CCCEEecCCCCccCCChHHHHHHH
Confidence            58999999981           123 3589999998764  233221111 35   899999986210       1    


Q ss_pred             ---hHHHHHHHhhcccCCeEEEEe
Q 044253           79 ---YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ---~~~~~~~~~~lL~~gG~ii~~   99 (139)
                         ....++.+.++|+|||.+++.
T Consensus       141 ~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        141 MYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEE
Confidence               134667788999999999985

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.23  E-value=0.0013  Score=47.68  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             hhhhhh--hcceeEEeCCccHHHHHHHHHHHcC--CCCcEEEEeCChHHHH-HhhHHhhhcccCCCceeEEEE-cCC--C
Q 044253            5 LESTFF--IYFIVAIDVSRESSETGLPIIKKVE--VDLKINLMESRALPAL-DQLLKDEKIHFFFENFDYAFV-DAH--K   76 (139)
Q Consensus         5 ~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g--~~~~i~~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~-D~~--~   76 (139)
                      +..+..  ..+|++.|.++ .+..++.|++.++  ...++.+..-|-.+.. .....    ..   +||+|+. |.-  .
T Consensus        61 i~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~----~~---~~D~IlasDv~Y~~  132 (173)
T PF10294_consen   61 IAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLE----PH---SFDVILASDVLYDE  132 (173)
T ss_dssp             HHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-----S---SBSEEEEES--S-G
T ss_pred             HHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccc----cc---cCCEEEEecccchH
Confidence            334444  67899999999 9999999999987  5567888776643322 12111    24   7999985 553  2


Q ss_pred             cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ..+..++..+..+|+++|.+++-
T Consensus       133 ~~~~~L~~tl~~ll~~~~~vl~~  155 (173)
T PF10294_consen  133 ELFEPLVRTLKRLLKPNGKVLLA  155 (173)
T ss_dssp             GGHHHHHHHHHHHBTT-TTEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEE
Confidence            45677888888999999986653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.22  E-value=0.0012  Score=51.86  Aligned_cols=57  Identities=14%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      ..+.+|+++|+|+.+++.+++++...+..++++++++|+.+. .        ..   .||.|+.+.++.
T Consensus        56 ~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-~--------~~---~~d~VvaNlPY~  112 (294)
T PTZ00338         56 QLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-E--------FP---YFDVCVANVPYQ  112 (294)
T ss_pred             HhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-c--------cc---ccCEEEecCCcc
Confidence            345689999999999999999998877667899999999875 1        24   799999988653

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0017  Score=52.40  Aligned_cols=76  Identities=17%  Similarity=0.227  Sum_probs=63.1

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV   92 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~   92 (139)
                      +|++-|+||++++.+++|++.+... ...++..|+..++.+.      ..   .||+|=+||- .....+++.+...++.
T Consensus        78 ~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~---~fd~IDiDPF-GSPaPFlDaA~~s~~~  146 (380)
T COG1867          78 KVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HR---AFDVIDIDPF-GSPAPFLDAALRSVRR  146 (380)
T ss_pred             EEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CC---CccEEecCCC-CCCchHHHHHHHHhhc
Confidence            7999999999999999999998443 4566669999998764      46   8999999984 3456789999999999


Q ss_pred             CeEEEEe
Q 044253           93 GGIVIYD   99 (139)
Q Consensus        93 gG~ii~~   99 (139)
                      ||++.+.
T Consensus       147 ~G~l~vT  153 (380)
T COG1867         147 GGLLCVT  153 (380)
T ss_pred             CCEEEEE
Confidence            9999874

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.11  E-value=0.0012  Score=50.77  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=56.6

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCC----------------------------------CCcEEEEe----CChHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEV----------------------------------DLKINLME----SRALP   49 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~----------------------------------~~~i~~~~----~da~~   49 (139)
                      -+....|.+||||+..++.|+++++...-                                  .+++.+..    .+..+
T Consensus        79 ~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~d  158 (288)
T KOG2899|consen   79 DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDD  158 (288)
T ss_pred             hhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchhcccccEEEecch
Confidence            33345699999999999999999764210                                  01111111    11222


Q ss_pred             HHHhhHHhhhcccCCCceeEEEEcCC---------CcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           50 ALDQLLKDEKIHFFFENFDYAFVDAH---------KDNYRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        50 ~l~~~~~~~~~~~~~~~fD~If~D~~---------~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                      +|...      ..   .||+|++=.-         -.....+|..+..+|.|||++|++-=-|..
T Consensus       159 fl~~~------~~---~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks  214 (288)
T KOG2899|consen  159 FLDMI------QP---EFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS  214 (288)
T ss_pred             hhhhc------cc---cccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence            33211      34   7999997431         123577899999999999999987655543

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.08  E-value=0.00069  Score=53.37  Aligned_cols=64  Identities=16%  Similarity=0.339  Sum_probs=39.9

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHH-HHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALP-ALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~-~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ++.++.+.++.|+|+.+++.|++|++.+ ++.++|+++...-.. .+..+...   .+   .||+.+++|+.
T Consensus       122 ~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~---~e---~~dftmCNPPF  187 (299)
T PF05971_consen  122 AKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQP---NE---RFDFTMCNPPF  187 (299)
T ss_dssp             HHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S----EEEEEE----
T ss_pred             hhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcc---cc---eeeEEecCCcc
Confidence            4556889999999999999999999999 999999998764332 22222111   35   89999999863

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.99  E-value=0.0018  Score=50.98  Aligned_cols=56  Identities=14%  Similarity=0.043  Sum_probs=44.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      ..+|+++|+|+++++.|++.+..   .+++++++++..++...+..+   -.   ++|.|++|.+
T Consensus        44 ~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~---~~---~vDgIl~DLG   99 (296)
T PRK00050         44 KGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG---LG---KVDGILLDLG   99 (296)
T ss_pred             CCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC---CC---ccCEEEECCC
Confidence            36899999999999999998865   468999999999986544210   13   6999999864

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.98  E-value=0.0039  Score=45.38  Aligned_cols=72  Identities=11%  Similarity=0.133  Sum_probs=47.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCC-------cc----
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHK-------DN----   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~-------~~----   78 (139)
                      .+|+++|+|+.+           +. .+++++++|+.+.  +..+....+ ..   +||+|++|+..       ..    
T Consensus        58 ~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~-~~---~~D~V~~~~~~~~~g~~~~~~~~~  121 (188)
T TIGR00438        58 GRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVG-DD---KVDVVMSDAAPNISGYWDIDHLRS  121 (188)
T ss_pred             ceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhC-CC---CccEEEcCCCCCCCCCccccHHHH
Confidence            469999999965           22 3578888887542  111111001 34   79999998521       01    


Q ss_pred             ---hHHHHHHHhhcccCCeEEEEe
Q 044253           79 ---YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ---~~~~~~~~~~lL~~gG~ii~~   99 (139)
                         ....+..+.+.|+|||.+++.
T Consensus       122 ~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438       122 IDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHHHHHHHHHHHHHccCCCEEEEE
Confidence               145677888999999999985

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.97  E-value=0.00077  Score=53.85  Aligned_cols=82  Identities=15%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             hhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcchHHHH
Q 044253            7 STFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDNYRNYR   83 (139)
Q Consensus         7 ~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~~~~~~   83 (139)
                      +|..| .+|++||-|.-+ +.|++.+..+++.+.+++++|.+.+.  .++     .+   +.|+|+..=  ....+...+
T Consensus        78 ~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~e---KVDiIvSEWMGy~Ll~EsMl  146 (346)
T KOG1499|consen   78 AAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VE---KVDIIVSEWMGYFLLYESML  146 (346)
T ss_pred             HHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC-----cc---ceeEEeehhhhHHHHHhhhh
Confidence            34443 479999998777 99999999999999999999999886  332     25   899999863  112233344


Q ss_pred             HHHh----hcccCCeEEEEe
Q 044253           84 ETLM----TLFKVGGIVIYD   99 (139)
Q Consensus        84 ~~~~----~lL~~gG~ii~~   99 (139)
                      +.++    +.|++||.+.-+
T Consensus       147 dsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  147 DSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             hhhhhhhhhccCCCceEccc
Confidence            4433    699999998643

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.95  E-value=0.0026  Score=47.90  Aligned_cols=78  Identities=15%  Similarity=0.127  Sum_probs=64.6

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCc-eeEEEEcCCCcchHHHHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFEN-FDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~-fD~If~D~~~~~~~~~~~~~   86 (139)
                      .....+||.+|.....+...++-.+..|+ ++++++++.+.++-.        +.   + ||+|.+-+-. ....+.+.+
T Consensus        88 ~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~--------~~---~~~D~vtsRAva-~L~~l~e~~  154 (215)
T COG0357          88 AFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQ--------EK---KQYDVVTSRAVA-SLNVLLELC  154 (215)
T ss_pred             hccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccc--------cc---ccCcEEEeehcc-chHHHHHHH
Confidence            34567799999999999999999999999 479999999988732        23   4 9999998753 466788899


Q ss_pred             hhcccCCeEEEE
Q 044253           87 MTLFKVGGIVIY   98 (139)
Q Consensus        87 ~~lL~~gG~ii~   98 (139)
                      .+++++||.+++
T Consensus       155 ~pllk~~g~~~~  166 (215)
T COG0357         155 LPLLKVGGGFLA  166 (215)
T ss_pred             HHhcccCCcchh
Confidence            999999998763

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=96.93  E-value=0.0022  Score=44.28  Aligned_cols=51  Identities=27%  Similarity=0.300  Sum_probs=38.3

Q ss_pred             cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcc----hHHHHHHHhhcccCCeEEEE
Q 044253           39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDN----YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~----~~~~~~~~~~lL~~gG~ii~   98 (139)
                      .+++..||+.+.++++      ..   .||+||.|+  +..+    -.+++..+.+++++||++..
T Consensus        32 ~L~L~~gDa~~~l~~l------~~---~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T   88 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL------DA---RFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT   88 (124)
T ss_dssp             EEEEEES-HHHHHHHB-------T----EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEEcHHHHHHHhC------cc---cCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            4677899999999887      45   899999997  2222    26789999999999999975

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PRK05785 hypothetical protein; Provisional

Probab=96.92  E-value=0.0021  Score=48.45  Aligned_cols=65  Identities=14%  Similarity=0.134  Sum_probs=48.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +.+|+++|+|++|++.|++.         ...+++|+... + +.     ++   +||+|++...   ..+....+.++.
T Consensus        74 ~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p-~~-----d~---sfD~v~~~~~l~~~~d~~~~l~e~~  134 (226)
T PRK05785         74 KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P-FR-----DK---SFDVVMSSFALHASDNIEKVIAEFT  134 (226)
T ss_pred             CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C-CC-----CC---CEEEEEecChhhccCCHHHHHHHHH
Confidence            46899999999999999863         13467888764 3 22     46   8999998653   235567888899


Q ss_pred             hcccCCe
Q 044253           88 TLFKVGG   94 (139)
Q Consensus        88 ~lL~~gG   94 (139)
                      +.|+|.+
T Consensus       135 RvLkp~~  141 (226)
T PRK05785        135 RVSRKQV  141 (226)
T ss_pred             HHhcCce
Confidence            9999953

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.82  E-value=0.0071  Score=50.93  Aligned_cols=82  Identities=12%  Similarity=0.129  Sum_probs=62.9

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CC-Cc------
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD---AH-KD------   77 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~-~~------   77 (139)
                      ......+++||++...+..|.+.....++ .++.++++|+......+.     ..   ++|.|++.   |. +.      
T Consensus       368 ~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~-----~~---sv~~i~i~FPDPWpKkrh~krR  438 (506)
T PRK01544        368 MNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLP-----NN---SLDGIYILFPDPWIKNKQKKKR  438 (506)
T ss_pred             hCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcC-----cc---cccEEEEECCCCCCCCCCcccc
Confidence            33456799999999999999888888888 479999999876554443     35   79999885   42 11      


Q ss_pred             -chHHHHHHHhhcccCCeEEEE
Q 044253           78 -NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 -~~~~~~~~~~~lL~~gG~ii~   98 (139)
                       ....+++.+.+.|++||.+.+
T Consensus       439 l~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        439 IFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             ccCHHHHHHHHHhcCCCCEEEE
Confidence             135688889999999999865

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.0012  Score=47.05  Aligned_cols=53  Identities=21%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ..|.++|+++++++++++|.+...++  +.++++|..+....       .+   .||.++++++.
T Consensus        72 e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-------~g---~fDtaviNppF  124 (185)
T KOG3420|consen   72 ESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-------GG---IFDTAVINPPF  124 (185)
T ss_pred             ceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-------CC---eEeeEEecCCC
Confidence            46999999999999999999999884  79999999886433       35   89999999863

>PRK06202 hypothetical protein; Provisional

Probab=96.71  E-value=0.0039  Score=46.82  Aligned_cols=77  Identities=9%  Similarity=0.035  Sum_probs=50.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~~   86 (139)
                      .+|+++|+|+++++.|+++....+    +++.++++... +. .     .+   +||+|++.....+     ....+..+
T Consensus        89 ~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l-~~-~-----~~---~fD~V~~~~~lhh~~d~~~~~~l~~~  154 (232)
T PRK06202         89 LEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDEL-VA-E-----GE---RFDVVTSNHFLHHLDDAEVVRLLADS  154 (232)
T ss_pred             cEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccc-cc-c-----CC---CccEEEECCeeecCChHHHHHHHHHH
Confidence            489999999999999998765433    45555544332 21 1     46   8999999753221     23567777


Q ss_pred             hhcccCCeEEEEeCCCCC
Q 044253           87 MTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~~~~  104 (139)
                      .+.++  |.+++.+...+
T Consensus       155 ~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        155 AALAR--RLVLHNDLIRS  170 (232)
T ss_pred             HHhcC--eeEEEeccccC
Confidence            77776  56666665544

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.69  E-value=0.0027  Score=52.76  Aligned_cols=94  Identities=13%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--------
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--------   79 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--------   79 (139)
                      .+...++++||++|++++.|++++....- +|.+++-.|+..++.++.+....+.   .||++++|.+..+.        
T Consensus       316 ~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~---~~dvl~~dvds~d~~g~~~pp~  391 (482)
T KOG2352|consen  316 SLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDI---CPDVLMVDVDSKDSHGMQCPPP  391 (482)
T ss_pred             ecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhcccccc---CCcEEEEECCCCCcccCcCCch
Confidence            34457899999999999999999876554 4788888999999887654211135   79999998643221        


Q ss_pred             ----HHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           80 ----RNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        80 ----~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                          ..++..+...|.|.|.++++-+..+.
T Consensus       392 ~fva~~~l~~~k~~l~p~g~f~inlv~r~~  421 (482)
T KOG2352|consen  392 AFVAQVALQPVKMILPPRGMFIINLVTRNS  421 (482)
T ss_pred             HHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence                22344455799999999887665543

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.69  E-value=0.0037  Score=48.72  Aligned_cols=74  Identities=9%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..++++.|......+.|++-++..|+.+++++.+.|+...--..+     +.   .+|.||+|-+.  ++..+.-+.+.|
T Consensus       130 tGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k-----s~---~aDaVFLDlPa--Pw~AiPha~~~l  199 (314)
T KOG2915|consen  130 TGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK-----SL---KADAVFLDLPA--PWEAIPHAAKIL  199 (314)
T ss_pred             CcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc-----cc---ccceEEEcCCC--hhhhhhhhHHHh
Confidence            368999999999999999999999999999999998875411111     24   89999999754  233344444555


Q ss_pred             cCCe
Q 044253           91 KVGG   94 (139)
Q Consensus        91 ~~gG   94 (139)
                      +.+|
T Consensus       200 k~~g  203 (314)
T KOG2915|consen  200 KDEG  203 (314)
T ss_pred             hhcC
Confidence            5555

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.69  E-value=0.0016  Score=53.55  Aligned_cols=51  Identities=27%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCc-EEEEeCChHHHHH
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLK-INLMESRALPALD   52 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~-i~~~~~da~~~l~   52 (139)
                      ||+++++..+.+|++-|.+++++++.+.|+..+.+.+. ++++..|+..+++
T Consensus       262 Pfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  262 PFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             ccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            99999999999999999999999999999999999655 9999999999984

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.62  E-value=0.0087  Score=47.35  Aligned_cols=83  Identities=18%  Similarity=0.157  Sum_probs=56.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~~~   88 (139)
                      ..|+++|.+.......+---+..|...++.++ ....+.++..       +   .||.||+-+   ...++...+.++..
T Consensus       139 ~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~~-------~---~FDtVF~MGVLYHrr~Pl~~L~~Lk~  207 (315)
T PF08003_consen  139 KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPNL-------G---AFDTVFSMGVLYHRRSPLDHLKQLKD  207 (315)
T ss_pred             CEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhcccc-------C---CcCEEEEeeehhccCCHHHHHHHHHH
Confidence            36999999998877755444445543333333 2233333332       5   899999987   34456778899999


Q ss_pred             cccCCeEEEEeCCCCCc
Q 044253           89 LFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        89 lL~~gG~ii~~~~~~~~  105 (139)
                      .|++||.++++.....|
T Consensus       208 ~L~~gGeLvLETlvi~g  224 (315)
T PF08003_consen  208 SLRPGGELVLETLVIDG  224 (315)
T ss_pred             hhCCCCEEEEEEeeecC
Confidence            99999999988776654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.54  E-value=0.0019  Score=49.20  Aligned_cols=57  Identities=18%  Similarity=0.124  Sum_probs=36.4

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHc---CCC-----CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKV---EVD-----LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~---g~~-----~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ..+.+|+++|.||-.....+.-++..   ...     .|++++++|+.++|. ..     ..   +||+|++||
T Consensus        95 ~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~-----~~---s~DVVY~DP  159 (234)
T PF04445_consen   95 SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QP-----DN---SFDVVYFDP  159 (234)
T ss_dssp             HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CH-----SS-----SEEEE--
T ss_pred             ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hc-----CC---CCCEEEECC
Confidence            35889999999999998888655432   211     489999999999987 22     46   899999998

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.53  E-value=0.0045  Score=48.39  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch----------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY----------   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~----------   79 (139)
                      ..+++++|+++.++..|+-|+...|.. ....+.++|.+..-....     ..   +||+|+++|+....          
T Consensus        77 ~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~-----~~---~~D~ii~NPPf~~~~~~~~~~~~~  148 (311)
T PF02384_consen   77 EINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK-----NQ---KFDVIIGNPPFGSKEWKDEELEKD  148 (311)
T ss_dssp             CEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS-----T-----EEEEEEE--CTCES-STGGGCTT
T ss_pred             cceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc-----cc---ccccccCCCCcccccccccccccc
Confidence            467999999999999999998877763 335799999875421110     14   79999999853211          


Q ss_pred             --------------HHHHHHHhhcccCCeEEE
Q 044253           80 --------------RNYRETLMTLFKVGGIVI   97 (139)
Q Consensus        80 --------------~~~~~~~~~lL~~gG~ii   97 (139)
                                    ..++..++..|++||.++
T Consensus       149 ~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~  180 (311)
T PF02384_consen  149 ERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA  180 (311)
T ss_dssp             CCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred             ccccccCCCccchhhhhHHHHHhhccccccee
Confidence                          136677889999999854

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.51  E-value=0.002  Score=47.80  Aligned_cols=81  Identities=17%  Similarity=0.228  Sum_probs=49.5

Q ss_pred             hcceeEEeCCccHHHHHHHH--------------HHH-----cC--------CCCcEEEEeCChHHHHHhhHHhhhcccC
Q 044253           11 IYFIVAIDVSRESSETGLPI--------------IKK-----VE--------VDLKINLMESRALPALDQLLKDEKIHFF   63 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n--------------~~~-----~g--------~~~~i~~~~~da~~~l~~~~~~~~~~~~   63 (139)
                      ..+|++.|+|+.+++.|++-              .++     .|        +.++|+|...|..+. ...      .. 
T Consensus        64 ~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~~------~~-  135 (196)
T PF01739_consen   64 DFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP-DPP------FG-  135 (196)
T ss_dssp             SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------------
T ss_pred             ceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC-Ccc------cC-
Confidence            46899999999999999861              111     11        124688888888771 111      35 


Q ss_pred             CCceeEEEEcCC-----CcchHHHHHHHhhcccCCeEEEEeCC
Q 044253           64 FENFDYAFVDAH-----KDNYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        64 ~~~fD~If~D~~-----~~~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                        .||+||+--.     ...-...++.+...|+|||++++...
T Consensus       136 --~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  136 --RFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             ---EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             --CccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence              8999998532     12235678888899999999998543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.39  E-value=0.01  Score=45.59  Aligned_cols=56  Identities=16%  Similarity=0.054  Sum_probs=44.0

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      .+....+|+++|+|+.+++.+++++..   .++++++++|+.+. + +       .   .||.|+.+.++.
T Consensus        47 L~~~~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~-~-~-------~---~~d~Vv~NlPy~  102 (258)
T PRK14896         47 LAKRAKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV-D-L-------P---EFNKVVSNLPYQ  102 (258)
T ss_pred             HHHhCCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC-C-c-------h---hceEEEEcCCcc
Confidence            344456899999999999999998854   35799999999764 1 1       3   689999987653

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.37  E-value=0.0015  Score=51.31  Aligned_cols=81  Identities=19%  Similarity=0.205  Sum_probs=54.2

Q ss_pred             hcceeEEeCCccHHHHHHHHH------------------HHc------------CCCCcEEEEeCChHHHHHhhHHhhhc
Q 044253           11 IYFIVAIDVSRESSETGLPII------------------KKV------------EVDLKINLMESRALPALDQLLKDEKI   60 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~------------------~~~------------g~~~~i~~~~~da~~~l~~~~~~~~~   60 (139)
                      ..+|+++|+|+.+++.|++-.                  ...            ++..+|+|...|..+.  ....    
T Consensus       147 ~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~--~~~~----  220 (287)
T PRK10611        147 RWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAK--QWAV----  220 (287)
T ss_pred             CcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCC--CCcc----
Confidence            457999999999999999741                  110            0224566666666542  1100    


Q ss_pred             ccCCCceeEEEEcC-----CCcchHHHHHHHhhcccCCeEEEEeC
Q 044253           61 HFFFENFDYAFVDA-----HKDNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        61 ~~~~~~fD~If~D~-----~~~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ..   +||+||+--     +...-..+++.+...|+|||++++..
T Consensus       221 ~~---~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        221 PG---PFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             CC---CcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            24   899999832     22234567888999999999998854

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.30  E-value=0.015  Score=46.04  Aligned_cols=57  Identities=12%  Similarity=0.081  Sum_probs=45.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      .+|+++|.|+++++.|++.+...  .+++++++++..++...+.. .+ ..   ++|.|++|-+
T Consensus        45 g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~-~~-~~---~vDgIl~DLG  101 (305)
T TIGR00006        45 GRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDE-LL-VT---KIDGILVDLG  101 (305)
T ss_pred             CEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHh-cC-CC---cccEEEEecc
Confidence            78999999999999999998754  46899999999987554421 11 24   7999999853

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.29  E-value=0.015  Score=43.93  Aligned_cols=54  Identities=19%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ...+++.|+++..++.|.+|+.++++.+++++.++|.+..+..       ++   .+|.|.+-+
T Consensus        40 ~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d---~~d~ivIAG   93 (226)
T COG2384          40 ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------ED---EIDVIVIAG   93 (226)
T ss_pred             cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cC---CcCEEEEeC
Confidence            3579999999999999999999999999999999999877643       45   799998865

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.28  E-value=0.0093  Score=48.05  Aligned_cols=75  Identities=12%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHH---
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRET---   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~---   85 (139)
                      ..+|++||-| +|.++|++.++.+.+.+||+++.|-+.+.  ++      .+   +.|+|+..|-.  -..++.++.   
T Consensus       200 A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PE---k~DviISEPMG~mL~NERMLEsYl~  267 (517)
T KOG1500|consen  200 AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PE---KVDVIISEPMGYMLVNERMLESYLH  267 (517)
T ss_pred             cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------ch---hccEEEeccchhhhhhHHHHHHHHH
Confidence            4589999986 68999999999999999999999988775  23      25   89999998731  112334443   


Q ss_pred             HhhcccCCeEEE
Q 044253           86 LMTLFKVGGIVI   97 (139)
Q Consensus        86 ~~~lL~~gG~ii   97 (139)
                      +.+.|+|.|.+.
T Consensus       268 Ark~l~P~GkMf  279 (517)
T KOG1500|consen  268 ARKWLKPNGKMF  279 (517)
T ss_pred             HHhhcCCCCccc
Confidence            237999999875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=96.23  E-value=0.0096  Score=44.11  Aligned_cols=75  Identities=11%  Similarity=0.152  Sum_probs=50.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~   86 (139)
                      +..++++||+|++.+..+.++    |    +.++++|+.+.|..+.     ++   +||.|++.-..   ..+...++++
T Consensus        35 k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~-----d~---sFD~VIlsqtLQ~~~~P~~vL~Em   98 (193)
T PF07021_consen   35 KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFP-----DQ---SFDYVILSQTLQAVRRPDEVLEEM   98 (193)
T ss_pred             cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCC-----CC---CccEEehHhHHHhHhHHHHHHHHH
Confidence            456799999999998877642    4    5799999999988764     46   99999997532   2334445544


Q ss_pred             hhcccCCeEEEEeCC
Q 044253           87 MTLFKVGGIVIYDNT  101 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~  101 (139)
                      ++. ...+++.+.|.
T Consensus        99 lRV-gr~~IVsFPNF  112 (193)
T PF07021_consen   99 LRV-GRRAIVSFPNF  112 (193)
T ss_pred             HHh-cCeEEEEecCh
Confidence            432 33444444443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.22  E-value=0.019  Score=43.60  Aligned_cols=83  Identities=19%  Similarity=0.208  Sum_probs=63.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch---HHHHHHHhhc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY---RNYRETLMTL   89 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~---~~~~~~~~~l   89 (139)
                      +=+.||-+|+.++..|.+-  ..-.+++.++.|--++.+..+.     +.   .||-|+-|.-...|   ..+.+.+.++
T Consensus       126 ~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~---~FDGI~yDTy~e~yEdl~~~hqh~~rL  195 (271)
T KOG1709|consen  126 EHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DK---HFDGIYYDTYSELYEDLRHFHQHVVRL  195 (271)
T ss_pred             ceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----cc---CcceeEeechhhHHHHHHHHHHHHhhh
Confidence            3477899999988887652  2335789999999999988875     45   79999999854444   4456678899


Q ss_pred             ccCCeEEEEeCCCCCc
Q 044253           90 FKVGGIVIYDNTLWGG  105 (139)
Q Consensus        90 L~~gG~ii~~~~~~~~  105 (139)
                      |||+|++-+-|.+..+
T Consensus       196 LkP~gv~SyfNg~~~~  211 (271)
T KOG1709|consen  196 LKPEGVFSYFNGLGAD  211 (271)
T ss_pred             cCCCceEEEecCcccc
Confidence            9999999876665544

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.18  E-value=0.0056  Score=49.23  Aligned_cols=63  Identities=10%  Similarity=0.141  Sum_probs=47.9

Q ss_pred             hhhhhhhcceeEEeCCccHHH-------HHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            5 LESTFFIYFIVAIDVSRESSE-------TGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~-------~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ++.|.+|+.|++.|||-.++.       -.+.|+++.|..+ -+.++.+|.....-.-      ..   .||.|++||++
T Consensus       224 vsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs------n~---~fDaIvcDPPY  294 (421)
T KOG2671|consen  224 VSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS------NL---KFDAIVCDPPY  294 (421)
T ss_pred             eehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh------cc---eeeEEEeCCCc
Confidence            577888999999999998887       4578999998644 3777888876542111      35   89999999853

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.13  E-value=0.01  Score=49.60  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=66.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|++-|.++.++...++|++.++..+.++..++|+...--..      ......||+|=+||- .....+++.+.+-++
T Consensus       135 ~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~------~~~~~~FDvIDLDPy-Gs~s~FLDsAvqav~  207 (525)
T KOG1253|consen  135 RQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH------PMVAKFFDVIDLDPY-GSPSPFLDSAVQAVR  207 (525)
T ss_pred             hhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc------cccccccceEecCCC-CCccHHHHHHHHHhh
Confidence            3689999999999999999999999999999999998764322      111128999999984 345678999999999


Q ss_pred             CCeEEEEe
Q 044253           92 VGGIVIYD   99 (139)
Q Consensus        92 ~gG~ii~~   99 (139)
                      .||++.+.
T Consensus       208 ~gGLL~vT  215 (525)
T KOG1253|consen  208 DGGLLCVT  215 (525)
T ss_pred             cCCEEEEE
Confidence            99999874

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.08  E-value=0.0023  Score=48.88  Aligned_cols=94  Identities=15%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc-C--CCcchHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD-A--HKDNYRNY   82 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D-~--~~~~~~~~   82 (139)
                      +..-+..++++||+|..|++.|.+.    |+  .=++.++++..+++...     .+   +||+|..- .  -......+
T Consensus       142 ~lR~~a~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~~~~-----~e---r~DLi~AaDVl~YlG~Le~~  207 (287)
T COG4976         142 ALRDMADRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLEDLT-----QE---RFDLIVAADVLPYLGALEGL  207 (287)
T ss_pred             hHHHHHhhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhhhcc-----CC---cccchhhhhHHHhhcchhhH
Confidence            3344467899999999999999753    32  12566778877775432     45   89999753 2  11234556


Q ss_pred             HHHHhhcccCCeEEEEeCC---CCCccccccccc
Q 044253           83 RETLMTLFKVGGIVIYDNT---LWGGTVAMAEEQ  113 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~---~~~~~~~~~~~~  113 (139)
                      +-.+..+|++||.+.++--   -+.+++..|+.+
T Consensus       208 ~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R  241 (287)
T COG4976         208 FAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR  241 (287)
T ss_pred             HHHHHHhcCCCceEEEEecccCCCCCeecchhhh
Confidence            6777789999999988521   234566666654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=96.08  E-value=0.0062  Score=44.49  Aligned_cols=65  Identities=11%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      ...++++|+++++++.+++.        +++++++|+.+.+....     +.   +||+|++....   .+....++.+.
T Consensus        36 ~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~-----~~---sfD~Vi~~~~l~~~~d~~~~l~e~~   99 (194)
T TIGR02081        36 QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFP-----DK---SFDYVILSQTLQATRNPEEILDEML   99 (194)
T ss_pred             CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccC-----CC---CcCEEEEhhHhHcCcCHHHHHHHHH
Confidence            45689999999999988641        36788888876433221     35   89999997532   23445566665


Q ss_pred             hccc
Q 044253           88 TLFK   91 (139)
Q Consensus        88 ~lL~   91 (139)
                      +.++
T Consensus       100 r~~~  103 (194)
T TIGR02081       100 RVGR  103 (194)
T ss_pred             HhCC
Confidence            5544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.97  E-value=0.053  Score=40.13  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------------   77 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------------   77 (139)
                      +...+.|+++++++..++-++.++.  ++..++.|....+..        +   +.|+++.++++.              
T Consensus        69 ~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~--------~---~VDvLvfNPPYVpt~~~~i~~~~i~~  135 (209)
T KOG3191|consen   69 ALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN--------E---SVDVLVFNPPYVPTSDEEIGDEGIAS  135 (209)
T ss_pred             ceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc--------C---CccEEEECCCcCcCCcccchhHHHHH
Confidence            3467899999999999999998886  489999999988753        5   899999987431              


Q ss_pred             ------c----hHHHHHHHhhcccCCeEEEEeCC
Q 044253           78 ------N----YRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        78 ------~----~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                            +    ...++.++-.+|+|.|++..-..
T Consensus       136 a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  136 AWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL  169 (209)
T ss_pred             HHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence                  0    12345556679999999876433

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.94  E-value=0.01  Score=44.74  Aligned_cols=78  Identities=12%  Similarity=0.088  Sum_probs=56.9

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----h
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----Y   79 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~   79 (139)
                      +..+....+++.+|. |+.++.+++       .+|++++.||.++   .+       .   .+|++++---..+     -
T Consensus       118 l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~---~~-------P---~~D~~~l~~vLh~~~d~~~  176 (241)
T PF00891_consen  118 LARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD---PL-------P---VADVYLLRHVLHDWSDEDC  176 (241)
T ss_dssp             HHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT---CC-------S---SESEEEEESSGGGS-HHHH
T ss_pred             HHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHh---hh-------c---cccceeeehhhhhcchHHH
Confidence            334455678999999 889999888       5799999999983   22       3   5999998543222     3


Q ss_pred             HHHHHHHhhcccCC--eEEEEeCCCC
Q 044253           80 RNYRETLMTLFKVG--GIVIYDNTLW  103 (139)
Q Consensus        80 ~~~~~~~~~lL~~g--G~ii~~~~~~  103 (139)
                      ..+++.+.+.|+||  |.|++.+...
T Consensus       177 ~~iL~~~~~al~pg~~g~llI~e~~~  202 (241)
T PF00891_consen  177 VKILRNAAAALKPGKDGRLLIIEMVL  202 (241)
T ss_dssp             HHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEEeecc
Confidence            45788888999998  9998866655

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=95.94  E-value=0.01  Score=45.55  Aligned_cols=83  Identities=17%  Similarity=0.097  Sum_probs=56.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEc-----CCCcchHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVD-----AHKDNYRNYRET   85 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D-----~~~~~~~~~~~~   85 (139)
                      .+|+++|-|+.+++..+++..-..  .++.-...|...- +....    +.+   ++|+|.+-     .+.......++.
T Consensus        98 l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~----~~~---svD~it~IFvLSAi~pek~~~a~~n  168 (264)
T KOG2361|consen   98 LKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPP----EEG---SVDIITLIFVLSAIHPEKMQSVIKN  168 (264)
T ss_pred             eEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCC----CcC---ccceEEEEEEEeccChHHHHHHHHH
Confidence            579999999999999999876544  3555555454322 11100    024   89977542     123345677889


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.++|+|||.+++.|.-.
T Consensus       169 l~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  169 LRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             HHHHhCCCcEEEEeeccc
Confidence            999999999999976544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=95.83  E-value=0.033  Score=43.06  Aligned_cols=67  Identities=12%  Similarity=0.043  Sum_probs=46.8

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .+..+.+|+++|+|+++++.+++++..    ++++++++|+.+. + +.     +.   .+|.|+.++++.-...++..+
T Consensus        60 L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~-~-~~-----~~---~~~~vv~NlPY~iss~ii~~~  125 (272)
T PRK00274         60 LLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV-D-LS-----EL---QPLKVVANLPYNITTPLLFHL  125 (272)
T ss_pred             HHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC-C-HH-----Hc---CcceEEEeCCccchHHHHHHH
Confidence            344456899999999999999988742    5799999999875 2 21     11   258999988764434444443


Q ss_pred             h
Q 044253           87 M   87 (139)
Q Consensus        87 ~   87 (139)
                      +
T Consensus       126 l  126 (272)
T PRK00274        126 L  126 (272)
T ss_pred             H
Confidence            3

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.83  E-value=0.018  Score=48.43  Aligned_cols=59  Identities=14%  Similarity=0.159  Sum_probs=40.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ..++++|+|+.++..++.++...+. ..+.+.++|...........  ..+   .||+|+.+|+.
T Consensus        64 ~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~--~~~---~fD~IIgNPPy  122 (524)
T TIGR02987        64 LNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIES--YLD---LFDIVITNPPY  122 (524)
T ss_pred             eeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccc--ccC---cccEEEeCCCc
Confidence            5689999999999999999988762 23667777755431111000  024   79999999864

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.78  E-value=0.04  Score=43.57  Aligned_cols=58  Identities=12%  Similarity=0.093  Sum_probs=45.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      ..+++++|.|+++++.|++.+...+  +|+++++++.......+... + ..   ++|-|++|-+
T Consensus        48 ~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~-~-i~---~vDGiL~DLG  105 (314)
T COG0275          48 LGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL-G-IG---KVDGILLDLG  105 (314)
T ss_pred             CCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc-C-CC---ceeEEEEecc
Confidence            3579999999999999999998766  79999999987765443211 1 24   8999999854

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=95.76  E-value=0.0044  Score=47.49  Aligned_cols=77  Identities=9%  Similarity=0.053  Sum_probs=48.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~~~~~~~l   89 (139)
                      .+|+++|+|++|++.|++.....-..-..++...+..+++..       ++   +.|+|.+--.  .-+..+++..+.+.
T Consensus        56 k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~-------e~---SVDlI~~Aqa~HWFdle~fy~~~~rv  125 (261)
T KOG3010|consen   56 KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG-------EE---SVDLITAAQAVHWFDLERFYKEAYRV  125 (261)
T ss_pred             hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC-------Cc---ceeeehhhhhHHhhchHHHHHHHHHH
Confidence            479999999999999987432111111122333333333211       46   8999987542  22457788889999


Q ss_pred             ccCCe-EEEE
Q 044253           90 FKVGG-IVIY   98 (139)
Q Consensus        90 L~~gG-~ii~   98 (139)
                      |+++| ++.+
T Consensus       126 LRk~Gg~iav  135 (261)
T KOG3010|consen  126 LRKDGGLIAV  135 (261)
T ss_pred             cCCCCCEEEE
Confidence            98888 6654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.52  E-value=0.09  Score=45.50  Aligned_cols=51  Identities=25%  Similarity=0.227  Sum_probs=40.6

Q ss_pred             cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcc----hHHHHHHHhhcccCCeEEEE
Q 044253           39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDN----YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~----~~~~~~~~~~lL~~gG~ii~   98 (139)
                      +++++.||+.+.++++      ..   .+|++|+|+  +..+    -.++|..+.+++++||+++-
T Consensus       148 ~l~l~~gd~~~~~~~~------~~---~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        148 TLDLWFGDANELLPQL------DA---RADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             EEEEEecCHHHHHHhc------cc---cccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence            4667889999998876      34   799999997  3222    25688999999999999974

>TIGR00755 ksgA dimethyladenosine transferase

Probab=95.38  E-value=0.057  Score=41.20  Aligned_cols=65  Identities=14%  Similarity=0.059  Sum_probs=45.6

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCcee---EEEEcCCCcchHHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFD---YAFVDAHKDNYRNYRE   84 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD---~If~D~~~~~~~~~~~   84 (139)
                      +....+|+++|+|+.+++.+++++..   .++++++++|+.+.-  .       .   .||   +|+.+.+......++.
T Consensus        48 ~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~--~-------~---~~d~~~~vvsNlPy~i~~~il~  112 (253)
T TIGR00755        48 LKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVD--L-------P---DFPKQLKVVSNLPYNISSPLIF  112 (253)
T ss_pred             HHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCC--h-------h---HcCCcceEEEcCChhhHHHHHH
Confidence            33446799999999999999988743   357999999997642  1       2   355   8888876543344444


Q ss_pred             HHh
Q 044253           85 TLM   87 (139)
Q Consensus        85 ~~~   87 (139)
                      .+.
T Consensus       113 ~ll  115 (253)
T TIGR00755       113 KLL  115 (253)
T ss_pred             HHh
Confidence            444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.34  E-value=0.073  Score=38.91  Aligned_cols=76  Identities=18%  Similarity=0.113  Sum_probs=55.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~~   86 (139)
                      ..++++|.|++......+..      +.++++.||+.+.-..+... + ..   .||.|++..+...     -..+++.+
T Consensus        74 ~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~-~-gq---~~D~viS~lPll~~P~~~~iaile~~  142 (194)
T COG3963          74 ESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEH-K-GQ---FFDSVISGLPLLNFPMHRRIAILESL  142 (194)
T ss_pred             cceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhc-C-CC---eeeeEEeccccccCcHHHHHHHHHHH
Confidence            46899999999998887654      34679999998763223211 1 35   6999999865433     34678999


Q ss_pred             hhcccCCeEEEE
Q 044253           87 MTLFKVGGIVIY   98 (139)
Q Consensus        87 ~~lL~~gG~ii~   98 (139)
                      ...|..||.++-
T Consensus       143 ~~rl~~gg~lvq  154 (194)
T COG3963         143 LYRLPAGGPLVQ  154 (194)
T ss_pred             HHhcCCCCeEEE
Confidence            999999999874

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=95.22  E-value=0.02  Score=43.63  Aligned_cols=73  Identities=18%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--------C------C
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--------H------K   76 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--------~------~   76 (139)
                      +...+++|+|+.|+++|.+  +...    -.++.+|.-+.++.-      .+   +||-+++=.        +      +
T Consensus        72 Gh~wiGvDiSpsML~~a~~--~e~e----gdlil~DMG~Glpfr------pG---tFDg~ISISAvQWLcnA~~s~~~P~  136 (270)
T KOG1541|consen   72 GHQWIGVDISPSMLEQAVE--RELE----GDLILCDMGEGLPFR------PG---TFDGVISISAVQWLCNADKSLHVPK  136 (270)
T ss_pred             CceEEeecCCHHHHHHHHH--hhhh----cCeeeeecCCCCCCC------CC---ccceEEEeeeeeeecccCccccChH
Confidence            4568999999999999987  2221    367788887776532      35   899988532        1      1


Q ss_pred             cchHHHHHHHhhcccCCeEEEE
Q 044253           77 DNYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~   98 (139)
                      .....+|..+...|++|+..++
T Consensus       137 ~Rl~~FF~tLy~~l~rg~raV~  158 (270)
T KOG1541|consen  137 KRLLRFFGTLYSCLKRGARAVL  158 (270)
T ss_pred             HHHHHHhhhhhhhhccCceeEE
Confidence            1234578888899999998876

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=95.01  E-value=0.068  Score=42.79  Aligned_cols=83  Identities=24%  Similarity=0.323  Sum_probs=52.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcC---------CCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVE---------VDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHK----   76 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g---------~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~----   76 (139)
                      ..+++++|++.+.++.|++..+...         ..-...++.+|.... +......  ...   +||+|=+=...    
T Consensus        85 i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~--~~~---~FDvVScQFalHY~F  159 (331)
T PF03291_consen   85 IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP--RSR---KFDVVSCQFALHYAF  159 (331)
T ss_dssp             -SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS--TTS----EEEEEEES-GGGGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc--cCC---CcceeehHHHHHHhc
Confidence            3579999999999999999883211         112467888888742 2221100  014   89999764422    


Q ss_pred             ---cchHHHHHHHhhcccCCeEEEE
Q 044253           77 ---DNYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        77 ---~~~~~~~~~~~~lL~~gG~ii~   98 (139)
                         .....+++.+...|+|||++|.
T Consensus       160 ese~~ar~~l~Nvs~~Lk~GG~FIg  184 (331)
T PF03291_consen  160 ESEEKARQFLKNVSSLLKPGGYFIG  184 (331)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEE
Confidence               1234578888899999999985

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.74  E-value=0.12  Score=34.67  Aligned_cols=80  Identities=15%  Similarity=0.131  Sum_probs=54.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|+++|.+++..+.+++    .|...-+.....|..+.+..+..    +.   .+|+||--.+.   ...++....+
T Consensus        13 ~G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~----~~---~~d~vid~~g~---~~~~~~~~~~   78 (130)
T PF00107_consen   13 MGAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTG----GR---GVDVVIDCVGS---GDTLQEAIKL   78 (130)
T ss_dssp             TTSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTT----TS---SEEEEEESSSS---HHHHHHHHHH
T ss_pred             cCCEEEEEECCHHHHHHHHh----hcccccccccccccccccccccc----cc---cceEEEEecCc---HHHHHHHHHH
Confidence            35899999999999888875    45432222223345555554421    24   69999876652   4577888999


Q ss_pred             ccCCeEEEEeCCCC
Q 044253           90 FKVGGIVIYDNTLW  103 (139)
Q Consensus        90 L~~gG~ii~~~~~~  103 (139)
                      |+++|.+++-...-
T Consensus        79 l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   79 LRPGGRIVVVGVYG   92 (130)
T ss_dssp             EEEEEEEEEESSTS
T ss_pred             hccCCEEEEEEccC
Confidence            99999999765544

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=94.74  E-value=0.16  Score=39.33  Aligned_cols=60  Identities=10%  Similarity=-0.077  Sum_probs=44.9

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      +.+..+.+|++||+|+.++...++.+.   ..++++++++|+.+.-  +..    -.   .++.|+.+.++.
T Consensus        47 ~Ll~~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d--~~~----l~---~~~~vVaNlPY~  106 (259)
T COG0030          47 PLLERAARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFD--FPS----LA---QPYKVVANLPYN  106 (259)
T ss_pred             HHHhhcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCc--chh----hc---CCCEEEEcCCCc
Confidence            345567789999999999999998875   3468999999999861  110    11   478899887653

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=94.56  E-value=0.042  Score=43.62  Aligned_cols=61  Identities=16%  Similarity=0.026  Sum_probs=41.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ...+++++|.|+++++.|++++...  .+++.+++++..++...+....+ ..   ++|.|++|.+.
T Consensus        43 ~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~-~~---~~dgiL~DLGv  103 (310)
T PF01795_consen   43 PNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNG-IN---KVDGILFDLGV  103 (310)
T ss_dssp             TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTT-TS----EEEEEEE-S-
T ss_pred             CCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccC-CC---ccCEEEEcccc
Confidence            3478999999999999999987644  57999999998876443322101 24   89999999653

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.52  E-value=0.053  Score=42.19  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             hhcceeEEeCCccHHHHHHHH------H-HHc--------------C-------CCCcEEEEeCChHHHHHhhHHhhhcc
Q 044253           10 FIYFIVAIDVSRESSETGLPI------I-KKV--------------E-------VDLKINLMESRALPALDQLLKDEKIH   61 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n------~-~~~--------------g-------~~~~i~~~~~da~~~l~~~~~~~~~~   61 (139)
                      +..+|++.|+|..+++.|+.-      . +..              |       +...|+|...|...--. .      .
T Consensus       128 ~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~------~  200 (268)
T COG1352         128 FRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F------L  200 (268)
T ss_pred             CceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c------c
Confidence            356899999999999999852      1 100              0       01223344444332210 1      2


Q ss_pred             cCCCceeEEEEcC-----CCcchHHHHHHHhhcccCCeEEEEe
Q 044253           62 FFFENFDYAFVDA-----HKDNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        62 ~~~~~fD~If~D~-----~~~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      .   .||+|||-=     +...-..+++.....|+|||++++-
T Consensus       201 ~---~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         201 G---KFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             C---CCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence            3   799999842     2223356788888999999999984

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=94.49  E-value=0.19  Score=38.23  Aligned_cols=77  Identities=21%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH-HHHHhhcc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY-RETLMTLF   90 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~-~~~~~~lL   90 (139)
                      ..|++||.|+......-...++-   .|+--+.+|+...-. .      .......|+||.|..+++-.+. ...+...|
T Consensus        99 G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~-Y------~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fL  168 (229)
T PF01269_consen   99 GVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEK-Y------RMLVEMVDVIFQDVAQPDQARIAALNARHFL  168 (229)
T ss_dssp             SEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGG-G------TTTS--EEEEEEE-SSTTHHHHHHHHHHHHE
T ss_pred             CcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHH-h------hcccccccEEEecCCChHHHHHHHHHHHhhc
Confidence            36999999997765555444433   468888899985422 1      1112289999999876655443 34455799


Q ss_pred             cCCeEEEE
Q 044253           91 KVGGIVIY   98 (139)
Q Consensus        91 ~~gG~ii~   98 (139)
                      ++||.+++
T Consensus       169 k~gG~~~i  176 (229)
T PF01269_consen  169 KPGGHLII  176 (229)
T ss_dssp             EEEEEEEE
T ss_pred             cCCcEEEE
Confidence            99999875

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.43  E-value=0.048  Score=42.89  Aligned_cols=79  Identities=13%  Similarity=0.039  Sum_probs=57.9

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYR   83 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~   83 (139)
                      +.+-+..+|..||+|...++...+-.++.|+ ++++.+.-|.+..+++-.     ..   +||.++.||+..  ...-++
T Consensus       170 aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~-----~~---kFDvfiTDPpeTi~alk~Fl  240 (354)
T COG1568         170 ALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDL-----KR---KFDVFITDPPETIKALKLFL  240 (354)
T ss_pred             HhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHH-----Hh---hCCeeecCchhhHHHHHHHH
Confidence            3344456899999999999999999999999 479999999998877543     24   899999999742  122333


Q ss_pred             HHHhhcccCC
Q 044253           84 ETLMTLFKVG   93 (139)
Q Consensus        84 ~~~~~lL~~g   93 (139)
                      ..-..-|+.-
T Consensus       241 gRGI~tLkg~  250 (354)
T COG1568         241 GRGIATLKGE  250 (354)
T ss_pred             hccHHHhcCC
Confidence            3333455555

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.32  E-value=0.086  Score=41.33  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=46.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      .+++|+++|+|+.|+....+..+........++++||+.+.  .+       .   .||.++.+.+.
T Consensus        79 ~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~--d~-------P---~fd~cVsNlPy  133 (315)
T KOG0820|consen   79 AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT--DL-------P---RFDGCVSNLPY  133 (315)
T ss_pred             hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC--CC-------c---ccceeeccCCc
Confidence            46789999999999999999998888778999999999875  11       4   69999987543

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.13  E-value=0.031  Score=47.32  Aligned_cols=78  Identities=12%  Similarity=-0.017  Sum_probs=58.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~~~~   84 (139)
                      +..++++||.+|.++-..+. ....+..++++++.+|.+.+-+.       .+   +.|+++..-     +..--++.++
T Consensus       394 RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~e---q~DI~VSELLGSFGDNELSPECLD  462 (649)
T KOG0822|consen  394 RKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------RE---QADIIVSELLGSFGDNELSPECLD  462 (649)
T ss_pred             CceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hh---hccchHHHhhccccCccCCHHHHH
Confidence            45679999999999988865 33344557999999999987421       25   799998652     2223466788


Q ss_pred             HHhhcccCCeEEEE
Q 044253           85 TLMTLFKVGGIVIY   98 (139)
Q Consensus        85 ~~~~lL~~gG~ii~   98 (139)
                      .+.+.|+|+|+-|-
T Consensus       463 G~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  463 GAQKFLKPDGISIP  476 (649)
T ss_pred             HHHhhcCCCceEcc
Confidence            88899999998763

>PRK04148 hypothetical protein; Provisional

Probab=93.95  E-value=0.13  Score=35.93  Aligned_cols=68  Identities=9%  Similarity=0.055  Sum_probs=45.0

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE   84 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~   84 (139)
                      ...+..+..|+++|+|+++++.|+++        .++++++|.++.-..+      -.   .+|+|+.-=+-......+-
T Consensus        33 ~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~------y~---~a~liysirpp~el~~~~~   95 (134)
T PRK04148         33 KKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI------YK---NAKLIYSIRPPRDLQPFIL   95 (134)
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH------Hh---cCCEEEEeCCCHHHHHHHH
Confidence            34555678999999999998888765        2688999988753333      25   7999997432223333333


Q ss_pred             HHhhc
Q 044253           85 TLMTL   89 (139)
Q Consensus        85 ~~~~l   89 (139)
                      .+.+.
T Consensus        96 ~la~~  100 (134)
T PRK04148         96 ELAKK  100 (134)
T ss_pred             HHHHH
Confidence            34443

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=93.79  E-value=0.078  Score=40.69  Aligned_cols=27  Identities=19%  Similarity=0.034  Sum_probs=20.8

Q ss_pred             Cchhhhhhh--cceeEEeCCccHHHHHHH
Q 044253            3 FNLESTFFI--YFIVAIDVSRESSETGLP   29 (139)
Q Consensus         3 ~~~~~~~~~--~~v~~vD~s~~~~~~Ar~   29 (139)
                      ||++....+  .+|+++|++++.++.|++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~   29 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALE   29 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence            466666666  799999999999988864

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.75  E-value=0.34  Score=39.89  Aligned_cols=99  Identities=11%  Similarity=0.151  Sum_probs=60.7

Q ss_pred             CCCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh----hhcc-cCCCceeEEEEcC-
Q 044253            1 MPFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD----EKIH-FFFENFDYAFVDA-   74 (139)
Q Consensus         1 ~~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~----~~~~-~~~~~fD~If~D~-   74 (139)
                      +|.|...|..+.+|+++|+++..++...+     |   +..+..-+..+.+++....    +..+ ...+..|++++-. 
T Consensus        22 LPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VP   93 (436)
T COG0677          22 LPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICVP   93 (436)
T ss_pred             HHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEEEec
Confidence            58888899999999999999998887642     2   3444444444433322111    0000 0001466666532 


Q ss_pred             ---------CCcchHHHHHHHhhcccCCeEEEEeCCCCCccc
Q 044253           75 ---------HKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV  107 (139)
Q Consensus        75 ---------~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~~~  107 (139)
                               +.....+..+.+.+.|++|-.++++...+.|+.
T Consensus        94 TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTT  135 (436)
T COG0677          94 TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTT  135 (436)
T ss_pred             CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcH
Confidence                     111224456677789999999999888887654

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=93.64  E-value=0.22  Score=40.04  Aligned_cols=82  Identities=17%  Similarity=0.149  Sum_probs=52.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc-CCCC----cEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCC-------c
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV-EVDL----KINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHK-------D   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~----~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~-------~   77 (139)
                      ..+.+++||..-.++.|++..+.. +..+    .+.++.+|.... |..+...   .+  -+||+|=+--..       .
T Consensus       140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~---~d--p~fDivScQF~~HYaFetee  214 (389)
T KOG1975|consen  140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF---KD--PRFDIVSCQFAFHYAFETEE  214 (389)
T ss_pred             ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC---CC--CCcceeeeeeeEeeeeccHH
Confidence            457999999999999999865532 1111    478999998764 2222100   12  049998543211       1


Q ss_pred             chHHHHHHHhhcccCCeEEE
Q 044253           78 NYRNYRETLMTLFKVGGIVI   97 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii   97 (139)
                      .....+.-+.+.|+|||++|
T Consensus       215 ~ar~~l~Nva~~LkpGG~FI  234 (389)
T KOG1975|consen  215 SARIALRNVAKCLKPGGVFI  234 (389)
T ss_pred             HHHHHHHHHHhhcCCCcEEE
Confidence            12335666778999999998

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.31  E-value=0.4  Score=38.61  Aligned_cols=73  Identities=18%  Similarity=0.143  Sum_probs=50.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|+++|++++..+.|++.    |..   .++.+.-.+..+..      .+   .||+|+.-.+    ...++..++.
T Consensus       189 ~ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~------~~---~~d~ii~tv~----~~~~~~~l~~  248 (339)
T COG1064         189 MGAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAV------KE---IADAIIDTVG----PATLEPSLKA  248 (339)
T ss_pred             cCCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHh------Hh---hCcEEEECCC----hhhHHHHHHH
Confidence            469999999999999999864    432   33433222233333      24   5999988765    3356778899


Q ss_pred             ccCCeEEEEeCCC
Q 044253           90 FKVGGIVIYDNTL  102 (139)
Q Consensus        90 L~~gG~ii~~~~~  102 (139)
                      |++||.+++-...
T Consensus       249 l~~~G~~v~vG~~  261 (339)
T COG1064         249 LRRGGTLVLVGLP  261 (339)
T ss_pred             HhcCCEEEEECCC
Confidence            9999999876555

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=93.15  E-value=0.57  Score=37.36  Aligned_cols=84  Identities=11%  Similarity=0.014  Sum_probs=56.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEE--EeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCc-----chHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINL--MESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKD-----NYRNY   82 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~--~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~-----~~~~~   82 (139)
                      ..+-+.||+|.++++.+.+++....+ +.+++  +++|+.+.+..+..... ..   ...+++.-+ ...     .-..+
T Consensus       104 ~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~-~~---~~r~~~flGSsiGNf~~~ea~~f  178 (319)
T TIGR03439       104 SVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPEN-RS---RPTTILWLGSSIGNFSRPEAAAF  178 (319)
T ss_pred             CceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccccc-cC---CccEEEEeCccccCCCHHHHHHH
Confidence            35679999999999999999984444 24555  89999887654421000 12   356666544 222     22456


Q ss_pred             HHHHhh-cccCCeEEEEe
Q 044253           83 RETLMT-LFKVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~~-lL~~gG~ii~~   99 (139)
                      +..+.+ .|++||.+++-
T Consensus       179 L~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       179 LAGFLATALSPSDSFLIG  196 (319)
T ss_pred             HHHHHHhhCCCCCEEEEe
Confidence            777777 89999999884

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=93.13  E-value=0.055  Score=42.16  Aligned_cols=31  Identities=39%  Similarity=0.612  Sum_probs=26.2

Q ss_pred             ceeEEE----EcCCCcchHHHHHHHhhcccCCeEEE
Q 044253           66 NFDYAF----VDAHKDNYRNYRETLMTLFKVGGIVI   97 (139)
Q Consensus        66 ~fD~If----~D~~~~~~~~~~~~~~~lL~~gG~ii   97 (139)
                      +||.|+    +|.. .+..++++.+.++|||||++|
T Consensus       165 ~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  165 SFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             cccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEE
Confidence            799884    6775 467889999999999999887

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=92.76  E-value=1.7  Score=27.78  Aligned_cols=73  Identities=16%  Similarity=0.099  Sum_probs=50.5

Q ss_pred             eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHHhhccc
Q 044253           14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETLMTLFK   91 (139)
Q Consensus        14 v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~~~lL~   91 (139)
                      |..+|-++...+..++.++..|+.  .-....+..+.+..+.     ..   .||+|++|...  .....+++.+...- 
T Consensus         1 Ilivd~~~~~~~~l~~~l~~~~~~--~v~~~~~~~~~~~~~~-----~~---~~d~iiid~~~~~~~~~~~~~~i~~~~-   69 (112)
T PF00072_consen    1 ILIVDDDPEIRELLEKLLERAGYE--EVTTASSGEEALELLK-----KH---PPDLIIIDLELPDGDGLELLEQIRQIN-   69 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTEE--EEEEESSHHHHHHHHH-----HS---TESEEEEESSSSSSBHHHHHHHHHHHT-
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCC--EEEEECCHHHHHHHhc-----cc---CceEEEEEeeecccccccccccccccc-
Confidence            467899999999999999977762  2335667777776654     35   89999999643  34456667665444 


Q ss_pred             CCeEEE
Q 044253           92 VGGIVI   97 (139)
Q Consensus        92 ~gG~ii   97 (139)
                      ++..++
T Consensus        70 ~~~~ii   75 (112)
T PF00072_consen   70 PSIPII   75 (112)
T ss_dssp             TTSEEE
T ss_pred             ccccEE
Confidence            444444

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=92.12  E-value=0.15  Score=41.40  Aligned_cols=82  Identities=17%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE-cC--CCcchHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV-DA--HKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~-D~--~~~~~~~~~~~~   86 (139)
                      +...+++++.++..+..+.......++.++..++.+|.....  ..     +.   .||.+.. |.  ..+.....++++
T Consensus       132 ~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--fe-----dn---~fd~v~~ld~~~~~~~~~~~y~Ei  201 (364)
T KOG1269|consen  132 KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--FE-----DN---TFDGVRFLEVVCHAPDLEKVYAEI  201 (364)
T ss_pred             ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--CC-----cc---ccCcEEEEeecccCCcHHHHHHHH
Confidence            457899999999999999888888888777777766665442  11     45   8999864 54  334567788899


Q ss_pred             hhcccCCeEEEEeCC
Q 044253           87 MTLFKVGGIVIYDNT  101 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~  101 (139)
                      .+.++|||.+++...
T Consensus       202 ~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  202 YRVLKPGGLFIVKEW  216 (364)
T ss_pred             hcccCCCceEEeHHH
Confidence            999999999987544

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=92.01  E-value=0.46  Score=36.53  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=44.4

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHH-
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRE-   84 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~-   84 (139)
                      +...+.+++|+.++-.+..++|+..   ..++++++.|+.+.+..+...   ..   +=-+|++||+.   .+|....+ 
T Consensus        77 R~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allPP---~~---rRglVLIDPpYE~~~dy~~v~~~  147 (245)
T PF04378_consen   77 REQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLPP---PE---RRGLVLIDPPYEQKDDYQRVVDA  147 (245)
T ss_dssp             -TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S----TT---S-EEEEE-----STTHHHHHHHH
T ss_pred             CccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCCC---CC---CCeEEEECCCCCCchHHHHHHHH
Confidence            4456899999999999999998864   358999999999988765422   23   44599999964   34554444 


Q ss_pred             --HHhhcccCCeEEE
Q 044253           85 --TLMTLFKVGGIVI   97 (139)
Q Consensus        85 --~~~~lL~~gG~ii   97 (139)
                        .+.+....|-+++
T Consensus       148 l~~a~kR~~~G~~~i  162 (245)
T PF04378_consen  148 LAKALKRWPTGVYAI  162 (245)
T ss_dssp             HHHHHHH-TTSEEEE
T ss_pred             HHHHHHhcCCcEEEE
Confidence              3444554444444

; PDB: 2OO3_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=91.87  E-value=0.45  Score=38.86  Aligned_cols=63  Identities=13%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEE-EcC----CCcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           34 VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAF-VDA----HKDNYRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        34 ~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If-~D~----~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                      .++ +++++++++..+++.+..     .+   ++|.++ +|.    +.......++.+.+.++|||.+++-+.....
T Consensus       272 ~~~-drv~i~t~si~~~L~~~~-----~~---s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  272 ARL-DRVRIHTDSIEEVLRRLP-----PG---SFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP  339 (380)
T ss_pred             cCC-CeEEEEeccHHHHHHhCC-----CC---CeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence            355 799999999999998653     35   899765 454    1234566778888999999999987665543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=91.23  E-value=0.45  Score=34.83  Aligned_cols=93  Identities=15%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHH------------HHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPI------------IKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDY   69 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n------------~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~   69 (139)
                      |.|+..|..+.+|+++|++++.++...+-            +++..-..+.++- .|..+.+          .   ..|+
T Consensus        14 ~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----------~---~adv   79 (185)
T PF03721_consen   14 PLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----------K---DADV   79 (185)
T ss_dssp             HHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----------H---H-SE
T ss_pred             HHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----------h---ccce
Confidence            45666777788999999999988876531            1111101122222 2222221          2   5788


Q ss_pred             EEEcCCC----------cchHHHHHHHhhcccCCeEEEEeCCCCCcccc
Q 044253           70 AFVDAHK----------DNYRNYRETLMTLFKVGGIVIYDNTLWGGTVA  108 (139)
Q Consensus        70 If~D~~~----------~~~~~~~~~~~~lL~~gG~ii~~~~~~~~~~~  108 (139)
                      +|+..+-          .......+.+.+.++++.++++.-...-|+..
T Consensus        80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~  128 (185)
T PF03721_consen   80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE  128 (185)
T ss_dssp             EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred             EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence            8875321          12345667777899999999987777766544

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.11  E-value=0.5  Score=37.80  Aligned_cols=80  Identities=14%  Similarity=0.031  Sum_probs=52.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .++|+++|++++.++.|++...   . +.+..... +.......+..    ..   .+|++|--..   ....++++.+.
T Consensus       193 a~~Viv~d~~~~Rl~~A~~~~g---~-~~~~~~~~~~~~~~~~~~t~----g~---g~D~vie~~G---~~~~~~~ai~~  258 (350)
T COG1063         193 ASVVIVVDRSPERLELAKEAGG---A-DVVVNPSEDDAGAEILELTG----GR---GADVVIEAVG---SPPALDQALEA  258 (350)
T ss_pred             CceEEEeCCCHHHHHHHHHhCC---C-eEeecCccccHHHHHHHHhC----CC---CCCEEEECCC---CHHHHHHHHHH
Confidence            4689999999999999987532   1 22222222 33333323211    23   5999987665   34468889999


Q ss_pred             ccCCeEEEEeCCCCC
Q 044253           90 FKVGGIVIYDNTLWG  104 (139)
Q Consensus        90 L~~gG~ii~~~~~~~  104 (139)
                      ++++|.+++-.+.-.
T Consensus       259 ~r~gG~v~~vGv~~~  273 (350)
T COG1063         259 LRPGGTVVVVGVYGG  273 (350)
T ss_pred             hcCCCEEEEEeccCC
Confidence            999999987555443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=90.66  E-value=0.98  Score=36.75  Aligned_cols=86  Identities=20%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHH-hhh--cccCCCceeEEEEcCCCcc---------h-
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLK-DEK--IHFFFENFDYAFVDAHKDN---------Y-   79 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~-~~~--~~~~~~~fD~If~D~~~~~---------~-   79 (139)
                      .|++=|.+...+...+.-+..... ..+.+...|+..+ +...- ..+  ...   .||.|++|.+...         + 
T Consensus       185 ~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~~~~~~~~~~---~fDrVLvDVPCS~Dgt~rk~~~i~  259 (375)
T KOG2198|consen  185 YVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYLKDGNDKEQL---KFDRVLVDVPCSGDGTLRKNPNIW  259 (375)
T ss_pred             eeEecccCHHHHHHHHHHHhccCC-cceeeecccceec-cccccccCchhhhh---hcceeEEecccCCCcccccCchHh
Confidence            688999999999999887766554 3566666665543 21100 000  024   7999999964321         0 


Q ss_pred             ----------------HHHHHHHhhcccCCeEEEEeCCCC
Q 044253           80 ----------------RNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        80 ----------------~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                      ..++...+++|++||.+|+.....
T Consensus       260 ~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  260 KEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             hhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence                            124455668999999999876555

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=90.64  E-value=2.1  Score=31.92  Aligned_cols=82  Identities=16%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             cceeEEeCCccHHHHHHHHHH-------HcCC-CCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCc--ch
Q 044253           12 YFIVAIDVSRESSETGLPIIK-------KVEV-DLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKD--NY   79 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~-------~~g~-~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~--~~   79 (139)
                      .++++||+.+...+.|+...+       ..|. ..++++.++|..+.  ...+      -.   .-|+||++.-.-  ..
T Consensus        67 ~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~------~s---~AdvVf~Nn~~F~~~l  137 (205)
T PF08123_consen   67 KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI------WS---DADVVFVNNTCFDPDL  137 (205)
T ss_dssp             SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH------GH---C-SEEEE--TTT-HHH
T ss_pred             cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh------hc---CCCEEEEeccccCHHH
Confidence            359999999999998876443       3444 35789999998754  2222      13   689999986421  12


Q ss_pred             HHHHHHHhhcccCCeEEEEeCCC
Q 044253           80 RNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      ...+...+..|++|..||.-.-+
T Consensus       138 ~~~L~~~~~~lk~G~~IIs~~~~  160 (205)
T PF08123_consen  138 NLALAELLLELKPGARIISTKPF  160 (205)
T ss_dssp             HHHHHHHHTTS-TT-EEEESS-S
T ss_pred             HHHHHHHHhcCCCCCEEEECCCc
Confidence            22345555788999998864333

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.59  E-value=1.6  Score=33.00  Aligned_cols=77  Identities=18%  Similarity=0.109  Sum_probs=52.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH-HHHHhhcc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY-RETLMTLF   90 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~-~~~~~~lL   90 (139)
                      ..+++||.++......-..+++-   +|+--+.+||...-+- ..-   -+   ..|+||.|..+++-.++ ...+...|
T Consensus       101 G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y-~~~---Ve---~VDviy~DVAQp~Qa~I~~~Na~~FL  170 (231)
T COG1889         101 GRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKY-RHL---VE---KVDVIYQDVAQPNQAEILADNAEFFL  170 (231)
T ss_pred             CcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHh-hhh---cc---cccEEEEecCCchHHHHHHHHHHHhc
Confidence            45999999999877665555442   4688888998864321 100   24   89999999877655444 34556799


Q ss_pred             cCCeEEEE
Q 044253           91 KVGGIVIY   98 (139)
Q Consensus        91 ~~gG~ii~   98 (139)
                      ++||.+++
T Consensus       171 k~~G~~~i  178 (231)
T COG1889         171 KKGGYVVI  178 (231)
T ss_pred             ccCCeEEE
Confidence            99996543

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=90.37  E-value=0.21  Score=33.74  Aligned_cols=41  Identities=17%  Similarity=0.481  Sum_probs=27.6

Q ss_pred             ceeEEEEcCCC---------cchHHHHHHHhhcccCCeEEEEeCCCCCcc
Q 044253           66 NFDYAFVDAHK---------DNYRNYRETLMTLFKVGGIVIYDNTLWGGT  106 (139)
Q Consensus        66 ~fD~If~D~~~---------~~~~~~~~~~~~lL~~gG~ii~~~~~~~~~  106 (139)
                      +||+|++=...         .....+|..+..+|+|||.+|++-=-|...
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY   50 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSY   50 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHH
Confidence            48999875421         134568899999999999999976666543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=90.35  E-value=0.17  Score=40.19  Aligned_cols=54  Identities=11%  Similarity=-0.100  Sum_probs=45.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ....|+++|.+|.+++..|+|++.+++.++..++.||-+..-.        ..   ..|.|.+.-
T Consensus       217 gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~---~AdrVnLGL  270 (351)
T KOG1227|consen  217 GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RL---RADRVNLGL  270 (351)
T ss_pred             CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cc---cchheeecc
Confidence            3567999999999999999999999998899999998876532        35   788898764

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=90.08  E-value=1.3  Score=28.89  Aligned_cols=72  Identities=19%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEEeCC---CCCccccccccc---CchhhhhchHHHHHHHHHHhhCCCC
Q 044253           66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNT---LWGGTVAMAEEQ---VPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      .||++++|.....-++.+-.+...++-||++++---   .|....-.-...   .|.. .....=++.|.+.+++++.+
T Consensus        11 e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~-~~~~~F~~rf~~~L~~~~~i   88 (92)
T PF08351_consen   11 EFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT-DVTPRFIRRFIRSLQSDPGI   88 (92)
T ss_dssp             -BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS--B--HHHHHHHHHHHCCSTTS
T ss_pred             ccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC-cccHHHHHHHHHHHHHCcCC
Confidence            799999999776678889999999999999987311   121111111111   1111 33455678888888888764

; PDB: 2ZPA_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=89.73  E-value=1.8  Score=27.73  Aligned_cols=84  Identities=18%  Similarity=0.196  Sum_probs=53.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcc-cCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIH-FFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~-~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ..++++|.++.++..++..... .....+.+..++.... ++ +.     . .   .||++.......  .....+..+.
T Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-----~~~---~~d~~~~~~~~~~~~~~~~~~~~~  142 (257)
T COG0500          73 AYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP-FE-----DSA---SFDLVISLLVLHLLPPAKALRELL  142 (257)
T ss_pred             ceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC-CC-----CCC---ceeEEeeeeehhcCCHHHHHHHHH
Confidence            3688899999999996655543 2211167787777652 22 11     1 3   699994433211  1356778888


Q ss_pred             hcccCCeEEEEeCCCCCc
Q 044253           88 TLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~~~  105 (139)
                      +.++++|.+++.......
T Consensus       143 ~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         143 RVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             HhcCCCcEEEEEeccCCC
Confidence            999999999886555433

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=89.50  E-value=0.59  Score=31.86  Aligned_cols=36  Identities=11%  Similarity=0.042  Sum_probs=30.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRAL   48 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~   48 (139)
                      .+|+++|.++++.+.+++|++.+++. +++++...+.
T Consensus        23 ~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~   58 (143)
T TIGR01444        23 GRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG   58 (143)
T ss_pred             CEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence            47999999999999999999999884 5888876554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=89.10  E-value=0.72  Score=34.52  Aligned_cols=84  Identities=11%  Similarity=-0.058  Sum_probs=49.6

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh-hcccCCCceeEEEEc-----CCCcchHHHHHHH
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE-KIHFFFENFDYAFVD-----AHKDNYRNYRETL   86 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~-~~~~~~~~fD~If~D-----~~~~~~~~~~~~~   86 (139)
                      +=.-.|.++....-.+.++...++.+-..-+.-|+.+---...... ....   +||.||+-     .+......+|..+
T Consensus        51 ~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~---~~D~i~~~N~lHI~p~~~~~~lf~~a  127 (204)
T PF06080_consen   51 TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE---SFDAIFCINMLHISPWSAVEGLFAGA  127 (204)
T ss_pred             EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC---CcceeeehhHHHhcCHHHHHHHHHHH
Confidence            3455688888888888888887764322223333332200000000 0024   79999973     1223446688888


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      .++|++||.+++-
T Consensus       128 ~~~L~~gG~L~~Y  140 (204)
T PF06080_consen  128 ARLLKPGGLLFLY  140 (204)
T ss_pred             HHhCCCCCEEEEe
Confidence            8999999999863

The function of this family is unknown.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=88.67  E-value=0.91  Score=34.28  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=24.8

Q ss_pred             ceeEEEEcCC--CcchHHHHHHHhhcccCCeEEEEeC
Q 044253           66 NFDYAFVDAH--KDNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        66 ~fD~If~D~~--~~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      +.|+++.--.  ..++.+++.++.+.|++||.+.+-.
T Consensus       122 svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE  158 (219)
T PF05148_consen  122 SVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE  158 (219)
T ss_dssp             -EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence            5666654432  2368899999999999999998743

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=87.03  E-value=0.94  Score=32.64  Aligned_cols=81  Identities=12%  Similarity=0.030  Sum_probs=47.5

Q ss_pred             eeEEeCCccHHHHH---HHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           14 IVAIDVSRESSETG---LPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        14 v~~vD~s~~~~~~A---r~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      +|+.|...+..+.-   .+|++...-..-..+.--|+...-......   ..   +||.|+..-|+..            
T Consensus        26 ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~---~~---~FDrIiFNFPH~G~~~~~~~~~i~~   99 (166)
T PF10354_consen   26 ATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLK---NQ---RFDRIIFNFPHVGGGSEDGKRNIRL   99 (166)
T ss_pred             EeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccccccc---CC---cCCEEEEeCCCCCCCccchhHHHHH
Confidence            45566666555543   366665533222233445666543222111   35   8999998754322            


Q ss_pred             ----hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 ----YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 ----~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                          ...+|..+.++|+++|.|.+.-
T Consensus       100 nr~Ll~~Ff~Sa~~~L~~~G~IhVTl  125 (166)
T PF10354_consen  100 NRELLRGFFKSASQLLKPDGEIHVTL  125 (166)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                2456778889999999998753

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=86.57  E-value=0.68  Score=35.84  Aligned_cols=95  Identities=18%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEE----------------------------EEeCChHHHHHhhHHh
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKIN----------------------------LMESRALPALDQLLKD   57 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~----------------------------~~~~da~~~l~~~~~~   57 (139)
                      .++.+..+|++.|-.+...+..+++++.-+--|.-.                            ++.+|+... ..    
T Consensus        74 sa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~-~p----  148 (256)
T PF01234_consen   74 SACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQP-NP----  148 (256)
T ss_dssp             TGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSS-ST----
T ss_pred             hHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCC-CC----
Confidence            334455679999999999998888876543222211                            222222211 00    


Q ss_pred             hhcc-cCCCceeEEEEcC-------CCcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           58 EKIH-FFFENFDYAFVDA-------HKDNYRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        58 ~~~~-~~~~~fD~If~D~-------~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                      .++. ..+.+||+|++-.       +...|...+..+..+|||||.+++-.++-..
T Consensus       149 l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t  204 (256)
T PF01234_consen  149 LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST  204 (256)
T ss_dssp             TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred             CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence            0000 0011499998642       3456777888899999999999987666544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=86.12  E-value=3.2  Score=32.35  Aligned_cols=70  Identities=16%  Similarity=0.040  Sum_probs=46.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~~~   88 (139)
                      .+|++.|.|+.|....    .+-|+    +++  +..+. ...      +.   +||+|-+==   ....+..+++.+.+
T Consensus       117 ~~v~aTE~S~~Mr~rL----~~kg~----~vl--~~~~w-~~~------~~---~fDvIscLNvLDRc~~P~~LL~~i~~  176 (265)
T PF05219_consen  117 KEVYATEASPPMRWRL----SKKGF----TVL--DIDDW-QQT------DF---KFDVISCLNVLDRCDRPLTLLRDIRR  176 (265)
T ss_pred             ceEEeecCCHHHHHHH----HhCCC----eEE--ehhhh-hcc------CC---ceEEEeehhhhhccCCHHHHHHHHHH
Confidence            4699999999885544    44554    444  33332 221      35   899997621   23356778999999


Q ss_pred             cccCCeEEEEeCC
Q 044253           89 LFKVGGIVIYDNT  101 (139)
Q Consensus        89 lL~~gG~ii~~~~  101 (139)
                      .|+|+|++++--+
T Consensus       177 ~l~p~G~lilAvV  189 (265)
T PF05219_consen  177 ALKPNGRLILAVV  189 (265)
T ss_pred             HhCCCCEEEEEEE
Confidence            9999999987544

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=85.94  E-value=2.8  Score=32.70  Aligned_cols=92  Identities=10%  Similarity=-0.022  Sum_probs=55.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhccc---CCCceeEEEEcC-----CCcchHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHF---FFENFDYAFVDA-----HKDNYRN   81 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~---~~~~fD~If~D~-----~~~~~~~   81 (139)
                      ..++|+-||+||-.+..++..+....- .+..++++|+.+.-.-+....- ..   +..+.=++++..     +..+...
T Consensus        94 P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~-~~~lD~~rPVavll~~vLh~v~D~~dp~~  171 (267)
T PF04672_consen   94 PDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEV-RGLLDFDRPVAVLLVAVLHFVPDDDDPAG  171 (267)
T ss_dssp             TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHH-HCC--TTS--EEEECT-GGGS-CGCTHHH
T ss_pred             CCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHH-HhcCCCCCCeeeeeeeeeccCCCccCHHH
Confidence            467899999999999999999876653 3689999999875221210000 12   001333444332     3345678


Q ss_pred             HHHHHhhcccCCeEEEEeCCCC
Q 044253           82 YRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      ++..+.+.|.+|.++++.+...
T Consensus       172 iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  172 IVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             HHHHHHCCS-TT-EEEEEEEB-
T ss_pred             HHHHHHHhCCCCceEEEEecCC
Confidence            8999999999999999987754

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=85.59  E-value=2.8  Score=32.60  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=48.2

Q ss_pred             eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCCcchHHHHH-HHhhccc
Q 044253           14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHKDNYRNYRE-TLMTLFK   91 (139)
Q Consensus        14 v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~-~~~~lL~   91 (139)
                      |++||.|...-...-...++-   .+|--+..|+...-+. +.     -.   -.|+||.|.++++...++. .+...|+
T Consensus       184 VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRml-----Vg---mVDvIFaDvaqpdq~RivaLNA~~FLk  252 (317)
T KOG1596|consen  184 VYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRML-----VG---MVDVIFADVAQPDQARIVALNAQYFLK  252 (317)
T ss_pred             EEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeee-----ee---eEEEEeccCCCchhhhhhhhhhhhhhc
Confidence            899999987655444333322   3566677888764321 11     23   6899999987655444332 3446999


Q ss_pred             CCeEEEEe
Q 044253           92 VGGIVIYD   99 (139)
Q Consensus        92 ~gG~ii~~   99 (139)
                      +||.+++.
T Consensus       253 ~gGhfvis  260 (317)
T KOG1596|consen  253 NGGHFVIS  260 (317)
T ss_pred             cCCeEEEE
Confidence            99998864

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.55  E-value=4.8  Score=32.47  Aligned_cols=83  Identities=12%  Similarity=0.032  Sum_probs=49.1

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      +.|+..++|+.+|.++..++.||+    .|...-...-..+..+.+.+.-++.-...   .+|+.|--..   ...-++.
T Consensus       189 Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~---~~d~~~dCsG---~~~~~~a  258 (354)
T KOG0024|consen  189 AKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGKK---QPDVTFDCSG---AEVTIRA  258 (354)
T ss_pred             HHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcccc---CCCeEEEccC---chHHHHH
Confidence            345556799999999999999998    35531111122221222222222211024   6898886553   2345677


Q ss_pred             HhhcccCCeEEEE
Q 044253           86 LMTLFKVGGIVIY   98 (139)
Q Consensus        86 ~~~lL~~gG~ii~   98 (139)
                      ....++.||.++.
T Consensus       259 ai~a~r~gGt~vl  271 (354)
T KOG0024|consen  259 AIKATRSGGTVVL  271 (354)
T ss_pred             HHHHhccCCEEEE
Confidence            7888999999664

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.35  E-value=5.6  Score=30.59  Aligned_cols=80  Identities=19%  Similarity=0.149  Sum_probs=48.4

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHH-------HHcCC-C--------CcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPII-------KKVEV-D--------LKINLMESRALPALDQLLKDEKIHFFFENF   67 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~-------~~~g~-~--------~~i~~~~~da~~~l~~~~~~~~~~~~~~~f   67 (139)
                      +...+..+.+|+.+|++++.++.+++.+       .+.|. .        .++++ ..|..    .+       .   ..
T Consensus        19 a~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~----~~-------~---~a   83 (282)
T PRK05808         19 AQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD----DL-------K---DA   83 (282)
T ss_pred             HHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH----Hh-------c---cC
Confidence            4445556779999999999998766433       22231 1        02222 22321    11       3   68


Q ss_pred             eEEEEcCCCcc--hHHHHHHHhhcccCCeEEEE
Q 044253           68 DYAFVDAHKDN--YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        68 D~If~D~~~~~--~~~~~~~~~~lL~~gG~ii~   98 (139)
                      |+|+.-.+...  ...++..+.+.++++.+++.
T Consensus        84 DlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s  116 (282)
T PRK05808         84 DLVIEAATENMDLKKKIFAQLDEIAKPEAILAT  116 (282)
T ss_pred             CeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence            99998764322  24677888888888887754

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=85.30  E-value=0.92  Score=36.38  Aligned_cols=31  Identities=29%  Similarity=0.613  Sum_probs=26.3

Q ss_pred             ceeEEE----EcCCCcchHHHHHHHhhcccCCeEEE
Q 044253           66 NFDYAF----VDAHKDNYRNYRETLMTLFKVGGIVI   97 (139)
Q Consensus        66 ~fD~If----~D~~~~~~~~~~~~~~~lL~~gG~ii   97 (139)
                      .||+|+    +|... +..++++++.+.|+|||+++
T Consensus       259 ~~d~VvTcfFIDTa~-NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  259 SYDVVVTCFFIDTAH-NILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             ccceEEEEEEeechH-HHHHHHHHHHHhccCCcEEE
Confidence            699884    67764 67889999999999999987

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=85.16  E-value=2.7  Score=35.44  Aligned_cols=90  Identities=16%  Similarity=0.208  Sum_probs=60.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------------   77 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------------   77 (139)
                      ...++.|+++.....|+-|+-..|+...+.+.++|...-..... + +...   +||+|+..|+..              
T Consensus       215 ~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~-~~~~---~~D~viaNPPf~~~~~~~~~~~~~~~  289 (489)
T COG0286         215 IFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-K-DDKG---KFDFVIANPPFSGKGWGGDLLESEQD  289 (489)
T ss_pred             eeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-c-CCcc---ceeEEEeCCCCCcccccccccccccc
Confidence            45899999999999999999999985456777777665421100 0 0024   799999877432              


Q ss_pred             --------------chHHHHHHHhhcccCCe---EEEEeCCCCCcc
Q 044253           78 --------------NYRNYRETLMTLFKVGG---IVIYDNTLWGGT  106 (139)
Q Consensus        78 --------------~~~~~~~~~~~lL~~gG---~ii~~~~~~~~~  106 (139)
                                    .+..++..+...|+|||   +++.+++++.|.
T Consensus       290 ~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~  335 (489)
T COG0286         290 ERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGG  335 (489)
T ss_pred             ccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCC
Confidence                          01345667778999866   344566666554

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=85.04  E-value=6.7  Score=29.53  Aligned_cols=86  Identities=10%  Similarity=0.177  Sum_probs=54.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      .+|.++|+|-...+-+...      ..+|.++.|+..+..  .+.... +++-   +-=+|++|+++.  ....-++.+.
T Consensus        98 ~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~-~~~y---~kIfvilDsdHs~~hvLAel~~~~  167 (237)
T COG3510          98 FKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRL-KNEY---PKIFVILDSDHSMEHVLAELKLLA  167 (237)
T ss_pred             ceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHH-hcCC---CcEEEEecCCchHHHHHHHHHHhh
Confidence            4799999998776654322      357999999876431  111100 1011   222556677643  2344566677


Q ss_pred             hcccCCeEEEEeCCCCCccc
Q 044253           88 TLFKVGGIVIYDNTLWGGTV  107 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~~~~~  107 (139)
                      ++|..|-++++.+....+..
T Consensus       168 pllsaG~Y~vVeDs~v~dlp  187 (237)
T COG3510         168 PLLSAGDYLVVEDSNVNDLP  187 (237)
T ss_pred             hHhhcCceEEEecccccCCC
Confidence            89999999999998887765

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=84.73  E-value=0.94  Score=36.50  Aligned_cols=61  Identities=13%  Similarity=0.279  Sum_probs=45.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH-HhhHHhhhcccCCCceeEEEEcCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL-DQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      ...-.+.|++...+..|++|+.++++.+++.+++.+..+.+ ....+..+ +.   .||++.++|+
T Consensus       126 n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~-e~---~ydFcMcNPP  187 (419)
T KOG2912|consen  126 NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEES-EI---IYDFCMCNPP  187 (419)
T ss_pred             cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCc-cc---eeeEEecCCc
Confidence            35678999999999999999999999999999998776553 21111100 23   5999999875

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=84.70  E-value=3.9  Score=31.81  Aligned_cols=78  Identities=15%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~~~   87 (139)
                      .-++.++|..|+=....+.|+.  + ..++++.++|....+......   .+   +=-+|++||+..   +|..+.+.+.
T Consensus       110 qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~~~l~a~LPP---~e---rRglVLIDPPfE~~~eY~rvv~~l~  180 (279)
T COG2961         110 QDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGFLALKAHLPP---KE---RRGLVLIDPPFELKDEYQRVVEALA  180 (279)
T ss_pred             hceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcHHHHhhhCCC---CC---cceEEEeCCCcccccHHHHHHHHHH
Confidence            4579999999999999999987  2 358999999999887654321   23   456999999753   4555544433


Q ss_pred             ---hcccCCeEEE
Q 044253           88 ---TLFKVGGIVI   97 (139)
Q Consensus        88 ---~lL~~gG~ii   97 (139)
                         +....|.+.|
T Consensus       181 ~~~kRf~~g~yai  193 (279)
T COG2961         181 EAYKRFATGTYAI  193 (279)
T ss_pred             HHHHhhcCceEEE
Confidence               4444444433

>PTZ00357 methyltransferase; Provisional

Probab=84.62  E-value=1.4  Score=39.14  Aligned_cols=82  Identities=9%  Similarity=-0.057  Sum_probs=49.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcC-C-------CCcEEEEeCChHHHHHhhHHh-h---hcccCCCceeEEEEcC----
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVE-V-------DLKINLMESRALPALDQLLKD-E---KIHFFFENFDYAFVDA----   74 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g-~-------~~~i~~~~~da~~~l~~~~~~-~---~~~~~~~~fD~If~D~----   74 (139)
                      ..+|++||.++.++...+.+..... .       .++++++++|.+.+-...... .   ...+   ++|+|+..-    
T Consensus       728 kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~g---KaDIVVSELLGSF  804 (1072)
T PTZ00357        728 RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFG---LCDLIVSELLGSL  804 (1072)
T ss_pred             cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccccccccccccc---ccceehHhhhccc
Confidence            3579999999887766655543221 1       346999999999872110000 0   0012   699999753    


Q ss_pred             -CCcchHHHHHHHhhcccC----CeE
Q 044253           75 -HKDNYRNYRETLMTLFKV----GGI   95 (139)
Q Consensus        75 -~~~~~~~~~~~~~~lL~~----gG~   95 (139)
                       +..--++.++.+.+.||+    +|+
T Consensus       805 GDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        805 GDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccCCHHHHHHHHHhhhhhcccccc
Confidence             222235567777777775    776

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=84.33  E-value=6.8  Score=29.27  Aligned_cols=115  Identities=10%  Similarity=0.063  Sum_probs=68.8

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------chH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------NYR   80 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------~~~   80 (139)
                      +..++.+||+|=+++..+..-          ..+++++.|.++.-. +...   -.   .||.|+.-....      .+.
T Consensus        20 A~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~-~a~~---l~---g~DaVIsA~~~~~~~~~~~~~   82 (211)
T COG2910          20 ALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTS-LASD---LA---GHDAVISAFGAGASDNDELHS   82 (211)
T ss_pred             HHhCCCeeEEEEeChHhcccc----------ccceeecccccChhh-hHhh---hc---CCceEEEeccCCCCChhHHHH
Confidence            445677899998887644321          357889999987632 2111   14   799999743211      122


Q ss_pred             HHHHHHhhcccCCeE---EEEeCC----CCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           81 NYRETLMTLFKVGGI---VIYDNT----LWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~---ii~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      .-.+.+...|+.-|.   +++-..    .-.|+-....+..|+.|.+.+.+..+|++.++....+
T Consensus        83 k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae~L~~Lr~~~~l  147 (211)
T COG2910          83 KSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAEFLDSLRAEKSL  147 (211)
T ss_pred             HHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHHHHHHHhhccCc
Confidence            334445555544221   222111    1123444455557899999999999999999887654

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=84.19  E-value=1.3  Score=34.17  Aligned_cols=63  Identities=11%  Similarity=0.198  Sum_probs=46.1

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChH-HHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRAL-PALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~-~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      .++.+-++.|+|+.+++.|+.++..+ ++...|++....=. ..+..+...   .+   .||+..++|+..
T Consensus       100 eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~---nE---~yd~tlCNPPFh  164 (292)
T COG3129         100 EYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK---NE---RYDATLCNPPFH  164 (292)
T ss_pred             eecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc---cc---eeeeEecCCCcc
Confidence            35678899999999999999999988 77777888754333 333333211   35   899999998753

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=84.17  E-value=4.8  Score=32.42  Aligned_cols=72  Identities=7%  Similarity=0.048  Sum_probs=52.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CCCcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD---AHKDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~~~~~~~~~~~~~   87 (139)
                      ++.|+-+|+|...+.+....+     ..|++.+..+...+....       .   +.|+|+--   +....+.-..++..
T Consensus       191 gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~---~aDlvIgaVLIpgakaPkLvt~e~v  255 (371)
T COG0686         191 GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------K---KADLVIGAVLIPGAKAPKLVTREMV  255 (371)
T ss_pred             CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------h---hccEEEEEEEecCCCCceehhHHHH
Confidence            568999999999888877654     257899988888765443       3   68888743   23334444677788


Q ss_pred             hcccCCeEEE
Q 044253           88 TLFKVGGIVI   97 (139)
Q Consensus        88 ~lL~~gG~ii   97 (139)
                      +.++||++|+
T Consensus       256 k~MkpGsViv  265 (371)
T COG0686         256 KQMKPGSVIV  265 (371)
T ss_pred             HhcCCCcEEE
Confidence            9999999985

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=84.13  E-value=3.9  Score=32.09  Aligned_cols=72  Identities=18%  Similarity=0.102  Sum_probs=43.6

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV   92 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~   92 (139)
                      +|++++.+++..+.+++    .|...-+.....+..+... .      ..   .+|+||--...   ...++.+.+.|++
T Consensus       196 ~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~-~------~g---~~D~vid~~G~---~~~~~~~~~~l~~  258 (343)
T PRK09880        196 EIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA-E------KG---YFDVSFEVSGH---PSSINTCLEVTRA  258 (343)
T ss_pred             EEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc-c------CC---CCCEEEECCCC---HHHHHHHHHHhhc
Confidence            68999999999888865    4542112211222222211 1      23   59988754432   2346677889999


Q ss_pred             CeEEEEeCC
Q 044253           93 GGIVIYDNT  101 (139)
Q Consensus        93 gG~ii~~~~  101 (139)
                      ||.++.-..
T Consensus       259 ~G~iv~~G~  267 (343)
T PRK09880        259 KGVMVQVGM  267 (343)
T ss_pred             CCEEEEEcc
Confidence            999986543

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=83.63  E-value=4.1  Score=34.20  Aligned_cols=83  Identities=13%  Similarity=0.096  Sum_probs=46.8

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc-CCCcchH
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD-AHKDNYR   80 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D-~~~~~~~   80 (139)
                      ++|++.+..+.+|+..|++++..+...+.....|.  .++ ...+..+++..+       .   ..|+|++- ++.....
T Consensus        15 ~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~--~i~-~~~s~~e~v~~l-------~---~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142         15 NLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT--RVK-GYHTLEELVNSL-------K---KPRKVILLIKAGEAVD   81 (470)
T ss_pred             HHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC--cce-ecCCHHHHHhcC-------C---CCCEEEEEeCChHHHH
Confidence            45677777888999999999998877654332232  111 223444444332       2   35655543 3333344


Q ss_pred             HHHHHHhhcccCCeEEE
Q 044253           81 NYRETLMTLFKVGGIVI   97 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii   97 (139)
                      .+++.+.+.|++|-+++
T Consensus        82 ~vi~~l~~~L~~g~iII   98 (470)
T PTZ00142         82 ETIDNLLPLLEKGDIII   98 (470)
T ss_pred             HHHHHHHhhCCCCCEEE
Confidence            55566666666665543

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=83.46  E-value=1.7  Score=30.77  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=16.1

Q ss_pred             chhhhhhhcceeEEeCCccHHH
Q 044253            4 NLESTFFIYFIVAIDVSRESSE   25 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~   25 (139)
                      |...+..+.+|..||.|+..-.
T Consensus        21 A~~la~~g~~vllvD~D~q~~~   42 (169)
T cd02037          21 ALALAKLGYKVGLLDADIYGPS   42 (169)
T ss_pred             HHHHHHcCCcEEEEeCCCCCCC
Confidence            3445556789999999987743

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=83.11  E-value=2.2  Score=32.00  Aligned_cols=78  Identities=10%  Similarity=0.003  Sum_probs=51.8

Q ss_pred             hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc-C--CCcchH
Q 044253            5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD-A--HKDNYR   80 (139)
Q Consensus         5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D-~--~~~~~~   80 (139)
                      +++++.+ ..|++.|+++...+.++-|.+.+|+.  +.+...|..-   .       ..   .||+|+.. .  ++..-.
T Consensus        95 IAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~-------~~---~~Dl~LagDlfy~~~~a~  159 (218)
T COG3897          95 IAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---S-------PP---AFDLLLAGDLFYNHTEAD  159 (218)
T ss_pred             HHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---C-------Cc---ceeEEEeeceecCchHHH
Confidence            4455554 47999999999999999999999974  8888777643   1       35   79999874 2  222233


Q ss_pred             HHHHHHhhcccCCeEEEE
Q 044253           81 NYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~   98 (139)
                      .++. .+..|...|..++
T Consensus       160 ~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         160 RLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             HHHH-HHHHHHhCCCEEE
Confidence            4445 4444555555443

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=83.02  E-value=6.8  Score=29.58  Aligned_cols=21  Identities=0%  Similarity=-0.216  Sum_probs=16.3

Q ss_pred             chhhhhhhcceeEEeCCccHH
Q 044253            4 NLESTFFIYFIVAIDVSRESS   24 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~   24 (139)
                      |...+..+.+|..||.|++.-
T Consensus        23 A~~la~~G~~VlliD~DpQ~s   43 (231)
T PRK13849         23 CAALASDGKRVALFEADENRP   43 (231)
T ss_pred             HHHHHhCCCcEEEEeCCCCCC
Confidence            445666788999999998764

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=82.95  E-value=1.7  Score=31.52  Aligned_cols=19  Identities=16%  Similarity=0.308  Sum_probs=15.0

Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .++..+.++|++||.+++.
T Consensus        37 ~~~~~~~rvLk~~g~~~i~   55 (231)
T PF01555_consen   37 EWLKECYRVLKPGGSIFIF   55 (231)
T ss_dssp             HHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhhcCCCeeEEEE
Confidence            3556777899999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=82.95  E-value=1.1  Score=34.50  Aligned_cols=58  Identities=16%  Similarity=0.013  Sum_probs=40.4

Q ss_pred             CCchhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE
Q 044253            2 PFNLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV   72 (139)
Q Consensus         2 ~~~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~   72 (139)
                      ||++++-..  ++..+++|+|..+++.....+...+..  .++...|...-.+        ..   ..|+.++
T Consensus       118 Plalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--------~~---~~DlaLl  177 (251)
T PF07091_consen  118 PLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--------KE---PADLALL  177 (251)
T ss_dssp             HHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--------TS---EESEEEE
T ss_pred             ceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--------CC---CcchhhH
Confidence            777777655  468999999999999999999999875  5555556544321        24   6777765

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=82.10  E-value=2.5  Score=32.36  Aligned_cols=69  Identities=6%  Similarity=-0.078  Sum_probs=45.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+.+++++|+|+..++..++.+.   ..++++++.+|+.++ .....-   ..   ....|+...+..--..++..+..
T Consensus        51 ~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~-~~~~~~---~~---~~~~vv~NlPy~is~~il~~ll~  119 (262)
T PF00398_consen   51 RGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKW-DLYDLL---KN---QPLLVVGNLPYNISSPILRKLLE  119 (262)
T ss_dssp             HSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTS-CGGGHC---SS---SEEEEEEEETGTGHHHHHHHHHH
T ss_pred             ccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhcc-ccHHhh---cC---CceEEEEEecccchHHHHHHHhh
Confidence            34789999999999999998765   346899999999875 211000   12   45678877766433455555554

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=82.00  E-value=1.7  Score=33.21  Aligned_cols=33  Identities=12%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEE
Q 044253           66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~   98 (139)
                      .+|+||+-....+....++.+.+++.+++.+++
T Consensus        59 ~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~   91 (293)
T TIGR00745        59 PADLVIITVKAYQTEEAAALLLPLIGKNTKVLF   91 (293)
T ss_pred             CCCEEEEeccchhHHHHHHHhHhhcCCCCEEEE
Confidence            799999987655567778888888888887765

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=81.75  E-value=5.4  Score=28.02  Aligned_cols=79  Identities=16%  Similarity=0.051  Sum_probs=52.5

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHH------cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKK------VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~------~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      ..+..+.+|+....+++.++..+++-..      ..+..++.+ ..|..+.+          .   ..|+|++-.+....
T Consensus        17 ~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~---~ad~IiiavPs~~~   82 (157)
T PF01210_consen   17 LLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E---DADIIIIAVPSQAH   82 (157)
T ss_dssp             HHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T---T-SEEEE-S-GGGH
T ss_pred             HHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C---cccEEEecccHHHH
Confidence            3455567899999999888877764321      112234544 45665543          2   57899998887788


Q ss_pred             HHHHHHHhhcccCCeEEEE
Q 044253           80 RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~   98 (139)
                      ..+++.+.+.++++-.++.
T Consensus        83 ~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   83 REVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             HHHHHHHTTTSHTT-EEEE
T ss_pred             HHHHHHHhhccCCCCEEEE
Confidence            8899999999988888775

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.69  E-value=10  Score=31.56  Aligned_cols=82  Identities=15%  Similarity=0.065  Sum_probs=50.5

Q ss_pred             eCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHH---HhhcccC
Q 044253           18 DVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRET---LMTLFKV   92 (139)
Q Consensus        18 D~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~---~~~lL~~   92 (139)
                      -..+.+.+..++|..+.++.-...+-..|......+--++.+ .+   .||+|++|....  .-..+|++   +.+.++|
T Consensus       139 TFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK-ke---~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~P  214 (483)
T KOG0780|consen  139 TFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK-KE---NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKP  214 (483)
T ss_pred             ccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH-hc---CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCC
Confidence            356788899999998887753344444554443322111111 35   899999997432  23345554   4468899


Q ss_pred             CeEEEEeCCCC
Q 044253           93 GGIVIYDNTLW  103 (139)
Q Consensus        93 gG~ii~~~~~~  103 (139)
                      +-+|.+-|...
T Consensus       215 d~vi~VmDasi  225 (483)
T KOG0780|consen  215 DEIIFVMDASI  225 (483)
T ss_pred             CeEEEEEeccc
Confidence            98887755544

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=81.65  E-value=4.3  Score=33.38  Aligned_cols=91  Identities=12%  Similarity=0.105  Sum_probs=50.8

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh-----hhcccCCCceeEEEEcCCC
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD-----EKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~-----~~~~~~~~~fD~If~D~~~   76 (139)
                      |+|...+..+.+|+++|++++.++..+     .|.   +.+...+..+.+.+....     ...-+   ..|+||+-.+.
T Consensus        17 ~~A~~La~~G~~V~~~D~~~~~v~~l~-----~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~~---~aDvvii~vpt   85 (415)
T PRK11064         17 PTAAAFASRQKQVIGVDINQHAVDTIN-----RGE---IHIVEPDLDMVVKTAVEGGYLRATTTPE---PADAFLIAVPT   85 (415)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHHH-----CCC---CCcCCCCHHHHHHHHhhcCceeeecccc---cCCEEEEEcCC
Confidence            556666767889999999999877532     121   222333333333211000     00012   46888876543


Q ss_pred             c----------chHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           77 D----------NYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        77 ~----------~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      +          ......+.+.+.+++|.+++..-+..
T Consensus        86 p~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~  122 (415)
T PRK11064         86 PFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP  122 (415)
T ss_pred             CCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            2          23344566778888888877654444

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=81.61  E-value=8.4  Score=29.57  Aligned_cols=73  Identities=15%  Similarity=0.039  Sum_probs=45.0

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+.+|++++.+++..+.+++    .|...-+.....+..+.+....     ..   .+|+|| |...   ...++...+.
T Consensus       167 ~G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~-----~~---gvd~vl-d~~g---~~~~~~~~~~  230 (329)
T cd08294         167 KGCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA-----PD---GIDCYF-DNVG---GEFSSTVLSH  230 (329)
T ss_pred             cCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC-----CC---CcEEEE-ECCC---HHHHHHHHHh
Confidence            36678999988888777765    4553222222234444443331     24   699887 4432   1356778889


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      |+++|.++.
T Consensus       231 l~~~G~iv~  239 (329)
T cd08294         231 MNDFGRVAV  239 (329)
T ss_pred             hccCCEEEE
Confidence            999999975

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=80.98  E-value=6.7  Score=31.18  Aligned_cols=75  Identities=20%  Similarity=0.212  Sum_probs=45.1

Q ss_pred             hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      ++ +|+++|.+++..+.+++    .|...-+.....+..+.+....     ..   .+|+||--...   ...+....+.
T Consensus       215 G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~---g~d~vid~~G~---~~~~~~~~~~  279 (371)
T cd08281         215 GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GG---GVDYAFEMAGS---VPALETAYEI  279 (371)
T ss_pred             CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CC---CCCEEEECCCC---hHHHHHHHHH
Confidence            45 69999999999888864    4542112222223333333321     24   68988743322   2356677889


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       280 l~~~G~iv~~G  290 (371)
T cd08281         280 TRRGGTTVTAG  290 (371)
T ss_pred             HhcCCEEEEEc
Confidence            99999988643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=80.43  E-value=8.9  Score=30.76  Aligned_cols=76  Identities=13%  Similarity=0.047  Sum_probs=60.6

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .++++|+++=-+++-++.+++-   .|+..-+.+...|..+.|++..     ..   ..|+.|=+...    +.++.++.
T Consensus       173 lkG~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~~L~~a~-----P~---GIDvyfeNVGg----~v~DAv~~  237 (340)
T COG2130         173 LKGCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQALKEAC-----PK---GIDVYFENVGG----EVLDAVLP  237 (340)
T ss_pred             hhCCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHHHHHHHC-----CC---CeEEEEEcCCc----hHHHHHHH
Confidence            5688999999999999998764   5776678888889888887654     24   79998877643    36788899


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      +|+..|+|++-
T Consensus       238 ~ln~~aRi~~C  248 (340)
T COG2130         238 LLNLFARIPVC  248 (340)
T ss_pred             hhccccceeee
Confidence            99999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		3e-28
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		4e-24
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		4e-09
3cbg_A	232	Functional And Structural Characterization Of A Cat		2e-08
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		3e-07
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		6e-05
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		3e-04
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		5e-04

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 80/121 (66%), Gaps = 3/121 (2%)
Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I AID  RE+ E GLP I+K  V+ KIN +ES A+ ALD LL+ ++      ++D+ FVD
Sbjct: 98  ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE---GSYDFGFVD 154
Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133
           A K NY  Y E LM L KVGGIV YDNTLWGGTVA  E +VP+ ++  R+    L+KL A
Sbjct: 155 ADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLA 214
Query: 134 S 134
           +
Sbjct: 215 A 215

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 70/94 (74%), Gaps = 3/94 (3%)
Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D+++E+ E GLP+IKK  VD KI+  E  ALP LD+++KDEK H    ++D+ FVD
Sbjct: 107 ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH---GSYDFIFVD 163
Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
           A KDNY NY + L+ L KVGG++ YDNTLW G+V
Sbjct: 164 ADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSV 197

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           +V  +V  +  E G P+ ++ E + KI+L    AL  LD+LL   +       FD A VD
Sbjct: 97  VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG----TFDVAVVD 152
Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
           A K+N   Y E  + L + GGI+     LW G V
Sbjct: 153 ADKENCSAYYERCLQLLRPGGILAVLRVLWRGKV 186

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A D    ++       +K  V  KI+L    AL  L+QL + + +      FD  F+D
Sbjct: 100 IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPL----PEFDLIFID 155
Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQ 113
           A K NY  Y E  + L + GG+++ DN LW G V   + Q
Sbjct: 156 ADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ 195

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           ++  D++   ++   P  ++ + + KI L    AL  L  LL +   H     FD+ F+D
Sbjct: 88  VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEH----QFDFIFID 143
Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
           A K NY NY E  + L    G++  DN  W G V
Sbjct: 144 ADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKV 177

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEK--------IHFFFE 65
           I+  DVS E +       K+  ++ KI L    AL  L Q+L D K          F   
Sbjct: 88  ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETL-QVLIDSKSAPSWASDFAFGPS 146
Query: 66  NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVP 115
           + D  F+DA K+NY NY   ++ L K GG++I DN LW G+VA    Q P
Sbjct: 147 SIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEP 196

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           +V ++ S + ++     I++  ++ ++ +    AL +L Q+ ++EK    +E FD+ F+D
Sbjct: 86  VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI-ENEK----YEPFDFIFID 140
Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107
           A K N   Y E  + L + G ++I DN +  G V
Sbjct: 141 ADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEV 174

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFE-NFDYAFV 72
           ++  DV  +S+       +K  +  KI L   R  PA D L   E IH      +D  ++
Sbjct: 92  LITCDVDEKSTALAKEYWEKAGLSDKIGL---RLSPAKDTLA--ELIHAGQAWQYDLIYI 146
Query: 73  DAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQ 113
           DA K N   Y E  + L + GG++  DN L  G VA  E Q
Sbjct: 147 DADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQ 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-29
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	6e-28
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	7e-28
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	5e-27
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	5e-27
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	9e-27
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-26
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	1e-26
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	2e-26
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	5e-26
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	1e-25
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	3e-24
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	3e-23
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	1e-22

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  105 bits (264), Expect = 2e-29
 Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 3/110 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I AID  RE+ E GLP I+K  V+ KIN +ES A+ ALD LL+ ++      ++D+ FVD
Sbjct: 98  ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE---GSYDFGFVD 154

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQ 123
           A K NY  Y E LM L KVGGIV YDNTLWGGTVA  E +VP+ ++  R+
Sbjct: 155 ADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENRE 204

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  102 bits (255), Expect = 6e-28
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 3/103 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D+++E+ E GLP+IKK  VD KI+  E  ALP LD+++KDEK H    ++D+ FVD
Sbjct: 107 ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH---GSYDFIFVD 163

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
           A KDNY NY + L+ L KVGG++ YDNTLW G+V    +    
Sbjct: 164 ADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLR 206

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  101 bits (255), Expect = 7e-28
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           ++ ++     ++     ++   VD ++ L E  AL +L+ L +          FD  F+D
Sbjct: 91  LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPA-------FDLIFID 143

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILR 119
           A K N  +Y    +   + G ++I DN +  G V   +     +  
Sbjct: 144 ADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQG 189

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 99.6 bits (249), Expect = 5e-27
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           IV+I+      E     +K + ++ +I L+   AL   ++L            FD  F+D
Sbjct: 81  IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPL-------FDVLFID 133

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTR 122
           A K  YR + +    + + GG+++ DN L+ G VA  + +     +   
Sbjct: 134 AAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIEHKRHKQLAT 182

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 99.2 bits (248), Expect = 5e-27
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           +V ++ S + ++     I++  ++ ++ +    AL +L Q+  ++      E FD+ F+D
Sbjct: 86  VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKY-----EPFDFIFID 140

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEI 117
           A K N   Y E  + L + G ++I DN +  G V       P +
Sbjct: 141 ADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRV 184

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 98.9 bits (247), Expect = 9e-27
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFEN------- 66
           I+  DVS E +       K+  ++ KI L    AL  L  L+  +    +  +       
Sbjct: 88  ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSS 147

Query: 67  FDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEI 117
            D  F+DA K+NY NY   ++ L K GG++I DN LW G+VA    Q P  
Sbjct: 148 IDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPST 198

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 98.5 bits (246), Expect = 1e-26
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A D    ++       +K  V  KI+L    AL  L+QL + + +      FD  F+D
Sbjct: 100 IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPL----PEFDLIFID 155

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEI 117
           A K NY  Y E  + L + GG+++ DN LW G V   + Q  + 
Sbjct: 156 ADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQT 199

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 98.5 bits (246), Expect = 1e-26
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           ++  DV  +S+       +K  +  KI L  S A   L +L+   +       +D  ++D
Sbjct: 92  LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQA----WQYDLIYID 147

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
           A K N   Y E  + L + GG++  DN L  G VA  E Q   
Sbjct: 148 ADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSEN 190

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 98.1 bits (245), Expect = 2e-26
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           +  I+ +    +     +     + ++ ++E  AL   + +          + +D  F+D
Sbjct: 98  VTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVND--------KVYDMIFID 149

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQ 123
           A K   + + E    L K  G+VI DN L+ G V+         +R   +
Sbjct: 150 AAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVK 199

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 97.4 bits (243), Expect = 5e-26
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           ++  D++   ++   P  ++ + + KI L    AL  L  LL +         FD+ F+D
Sbjct: 88  VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGE----HQFDFIFID 143

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
           A K NY NY E  + L    G++  DN  W G V    +   +
Sbjct: 144 ADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQ 186

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 95.9 bits (239), Expect = 1e-25
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           +V  +V  +  E G P+ ++ E + KI+L    AL  LD+LL   +       FD A VD
Sbjct: 97  VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA----GTFDVAVVD 152

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
           A K+N   Y E  + L + GGI+     LW G V    +    
Sbjct: 153 ADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVA 195

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 92.0 bits (229), Expect = 3e-24
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 14  IVAIDVSRESSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV 72
           +  ID   E       + ++      ++  + SR L  + +L          +++   F 
Sbjct: 84  LTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--------DSYQLVFG 135

Query: 73  DAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
                + +   +    L + GG ++  + L  GT+A    +  +
Sbjct: 136 QVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRD 179

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 89.2 bits (222), Expect = 3e-23
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           +V ID  R++ E    ++    +  ++ L     L                 + D  F+D
Sbjct: 84  VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ----------RDIDILFMD 133

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEE 112
               N  +  E +        ++I  N L  G+VA + E
Sbjct: 134 CDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAESHE 172

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score = 87.7 bits (218), Expect = 1e-22
 Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           ++ ++++ + +     ++    +  K+ ++   +   + QL K   +    +  D  F+D
Sbjct: 86  LLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDV----DTLDMVFLD 141

Query: 74  AHKDNYRNYRETLMT--LFKVGGIVIYDNTLWGGTVAMAE 111
             KD Y      L    L + G +++ DN +  GT     
Sbjct: 142 HWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLA 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.84
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.81
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.8
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.8
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.79
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.78
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.77
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.77
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.77
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.76
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.68
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.66
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.59
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.58
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.42
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.32
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.32
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.3
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.29
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.29
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.26
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.26
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.25
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.25
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.23
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.22
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.22
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.21
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.21
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.21
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.2
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.17
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.17
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.15
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.13
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.13
2o07_A	304	Spermidine synthase; structural genomics, structur	99.11
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.06
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.06
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.06
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.05
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.04
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.04
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.02
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.02
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.02
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.01
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.0
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.0
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.99
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.99
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.98
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.98
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.97
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.97
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.97
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.97
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.95
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.94
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.93
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.92
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.92
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.91
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.91
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.91
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.91
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.9
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.9
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.89
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.89
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.89
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.88
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.88
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.88
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.88
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.87
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.87
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.86
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.86
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.85
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.85
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.84
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.84
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.82
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.81
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.8
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.8
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.8
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.8
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.79
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.79
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.79
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.79
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.79
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.79
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.79
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.78
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.78
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.78
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.74
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.74
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.74
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.73
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.73
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.72
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.72
3ocj_A	305	Putative exported protein; structural genomics, PS	98.72
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.71
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.71
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.69
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.69
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.68
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.68
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.67
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.67
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.67
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.67
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.67
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.66
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.66
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.66
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.65
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.65
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.65
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.65
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.65
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.64
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.64
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.64
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.63
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.63
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.63
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.62
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.62
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.61
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.61
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.61
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.61
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.61
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.61
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.61
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.61
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.6
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.6
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.59
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.59
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.59
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.58
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.58
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.56
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.56
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.56
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.55
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.55
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.54
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.54
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.54
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.53
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.53
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.53
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.52
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.51
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.5
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.5
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.5
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.49
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.49
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.48
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.48
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.48
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.48
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.48
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.48
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.47
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.47
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.47
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.46
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.46
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.46
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.46
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.45
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.43
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.43
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.42
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.41
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.41
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.4
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.39
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.39
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.38
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.38
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.38
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	98.37
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.37
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.36
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.36
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.35
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.34
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.34
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.34
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.33
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.33
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.33
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.32
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.31
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.31
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.31
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.3
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.3
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.3
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.28
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.28
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.28
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.28
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.27
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.26
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.26
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.25
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.22
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.22
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.22
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.21
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.21
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.21
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.21
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.2
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.19
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.18
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.14
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.12
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.11
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.1
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.08
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.08
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.07
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.06
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.05
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.98
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.95
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.95
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.95
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.95
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.9
3ege_A	261	Putative methyltransferase from antibiotic biosyn	97.89
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.88
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.87
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.86
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.84
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.84
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.79
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.79
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.78
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.67
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.66
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.62
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.61
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.58
3khk_A	544	Type I restriction-modification system methylation	97.57
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.54
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.54
3lkd_A	542	Type I restriction-modification system methyltrans	97.53
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.53
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.52
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.45
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.42
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.41
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.39
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.36
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.28
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.21
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.21
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.12
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.09
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.07
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.02
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.84
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.82
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.75
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.71
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.64
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	96.46
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	96.45
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.31
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	96.3
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.2
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	96.11
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.02
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.86
3ufb_A	530	Type I restriction-modification system methyltran	95.23
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	95.23
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	95.09
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	95.03
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	94.94
3cg0_A	140	Response regulator receiver modulated diguanylate	94.37
3rqi_A	184	Response regulator protein; structural genomics, s	94.18
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	94.16
3i42_A	127	Response regulator receiver domain protein (CHEY-	93.98
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	93.98
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	93.97
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.97
3grc_A	140	Sensor protein, kinase; protein structure initiati	93.95
2qr3_A	140	Two-component system response regulator; structura	93.92
2zay_A	147	Response regulator receiver protein; structural ge	93.86
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.84
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	93.31
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.29
2gkg_A	127	Response regulator homolog; social motility, recei	93.26
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	93.24
3lua_A	140	Response regulator receiver protein; two-component	93.23
3eul_A	152	Possible nitrate/nitrite response transcriptional	93.21
2rjn_A	154	Response regulator receiver:metal-dependent phosph	93.19
3f6c_A	134	Positive transcription regulator EVGA; structural	93.11
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	93.05
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	93.05
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	93.04
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	93.02
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	92.97
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	92.61
3jte_A	143	Response regulator receiver protein; structural ge	92.48
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	92.36
3cz5_A	153	Two-component response regulator, LUXR family; str	92.33
2r25_B	133	Osmosensing histidine protein kinase SLN1; alpha5-	92.3
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.19
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.16
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.15
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.14
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.14
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	92.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	91.99
3cnb_A	143	DNA-binding response regulator, MERR family; signa	91.98
1dz3_A	130	Stage 0 sporulation protein A; response regulator,	91.97
3crn_A	132	Response regulator receiver domain protein, CHEY-;	91.87
3kto_A	136	Response regulator receiver protein; PSI-II,struct	91.79
3lte_A	132	Response regulator; structural genomics, PSI, prot	91.71
2qxy_A	142	Response regulator; regulation of transcription, N	91.49
3hdg_A	137	Uncharacterized protein; two-component sensor acti	91.4
2lpm_A	123	Two-component response regulator; transcription re	91.35
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	91.34
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	91.28
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	91.2
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	91.18
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	91.18
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	91.16
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.02
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	90.97
3gms_A	340	Putative NADPH:quinone reductase; structural genom	90.93
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	90.93
4eye_A	342	Probable oxidoreductase; structural genomics, niai	90.87
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.8
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	90.78
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	90.77
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	90.73
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	90.58
4dad_A	146	Putative pilus assembly-related protein; response	90.53
2qsj_A	154	DNA-binding response regulator, LUXR family; struc	90.52
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	90.5
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	90.43
2b4a_A	138	BH3024; flavodoxin-like fold, structural genomics,	90.42
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	90.31
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.16
3gt7_A	154	Sensor protein; structural genomics, signal receiv	90.15
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	90.05
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	89.99
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	89.97
1s8n_A	205	Putative antiterminator; RV1626, structural genomi	89.94
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	89.94
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	89.92
3mm4_A	206	Histidine kinase homolog; receiver domain, CKI1, c	89.4
3r0j_A	250	Possible two component system response transcript	89.33
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	89.19
2zig_A	297	TTHA0409, putative modification methylase; methylt	89.14
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	89.12
3heb_A	152	Response regulator receiver domain protein (CHEY);	89.12
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	89.06
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	88.99
1ys7_A	233	Transcriptional regulatory protein PRRA; response	88.98
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	88.97
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	88.96
3m6m_D	143	Sensory/regulatory protein RPFC; RPFF, REC, enoyl-	88.94
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.93
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	88.92
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	88.83
3cfy_A	137	Putative LUXO repressor protein; structural genomi	88.75
2qv0_A	143	Protein MRKE; structural genomics, transcription,	88.65
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	88.45
1yio_A	208	Response regulatory protein; transcription regulat	88.41
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	88.37
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	88.34
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	88.22
1srr_A	124	SPO0F, sporulation response regulatory protein; as	88.2
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	88.18
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	88.16
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	88.09
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	87.91
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.91
2qzj_A	136	Two-component response regulator; 11017X, PSI-II,	87.71
2a9o_A	120	Response regulator; essential protein, YYCF/YYCG h	87.57
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	87.53
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	87.52
1zgz_A	122	Torcad operon transcriptional regulatory protein;	87.45
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	87.41
1p6q_A	129	CHEY2; chemotaxis, signal transduction, response r	87.37
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	87.32
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	87.23
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	87.2
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	86.94
1jbe_A	128	Chemotaxis protein CHEY; signaling protein; 1.08A	86.84
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	86.74
3n0r_A	286	Response regulator; sigma factor, receiver, two-co	86.73
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.64
3kyj_B	145	CHEY6 protein, putative histidine protein kinase;	86.59
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	86.57
3c97_A	140	Signal transduction histidine kinase; structural g	86.52
1mb3_A	124	Cell division response regulator DIVK; signal tran	86.5
2qvg_A	143	Two component response regulator; NYSGXRC, PSI-2,	86.38
3c3w_A	225	Two component transcriptional regulatory protein;	86.3
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	86.24
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	86.07
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	86.0
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	85.96
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	85.86
3q9s_A	249	DNA-binding response regulator; DNA binding protei	85.77
1xhf_A	123	DYE resistance, aerobic respiration control protei	85.73
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	85.68
2j48_A	119	Two-component sensor kinase; pseudo-receiver, circ	85.61
1a04_A	215	Nitrate/nitrite response regulator protein NARL; s	85.52
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	85.35
2oqr_A	230	Sensory transduction protein REGX3; response regul	85.25
3n53_A	140	Response regulator receiver modulated diguanylate;	84.99
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	84.95
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	84.75
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	84.74
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	84.72
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	84.72
2ayx_A	254	Sensor kinase protein RCSC; two independent struct	84.68
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	84.48
3nhm_A	133	Response regulator; protein structure initiative I	84.46
3h1g_A	129	Chemotaxis protein CHEY homolog; sulfate-bound CHE	84.37
3c3m_A	138	Response regulator receiver protein; structural ge	84.1
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	84.06
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	83.93
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	83.41
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	83.38
3eqz_A	135	Response regulator; structural genomics, unknown f	82.97
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	82.71
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	82.24
2jba_A	127	Phosphate regulon transcriptional regulatory PROT;	81.84
2rdm_A	132	Response regulator receiver protein; structural ge	81.8
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	81.66
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	81.51
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	80.77
2gwr_A	238	DNA-binding response regulator MTRA; two-component	80.62
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	80.59
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	80.22
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	80.22
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	80.12
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	80.07

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.84  E-value=1.3e-20  Score=140.20  Aligned_cols=116  Identities=16%  Similarity=0.271  Sum_probs=104.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      +++|++||+|+++++.|+++++..|+. ++++++++|+.+.++.+.     .+   +||+||+|+.+..+..+++.+.++
T Consensus        81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-----~~---~fD~V~~d~~~~~~~~~l~~~~~~  152 (221)
T 3dr5_A           81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-----ND---SYQLVFGQVSPMDLKALVDAAWPL  152 (221)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-----TT---CEEEEEECCCTTTHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-----CC---CcCeEEEcCcHHHHHHHHHHHHHH
Confidence            578999999999999999999999997 799999999999876542     25   899999999988999999999999


Q ss_pred             ccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           90 FKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        90 L~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      |+|||+++++|++|.|.+..+...     +..+.++++|++++.++|+|+
T Consensus       153 LkpGG~lv~dn~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~  197 (221)
T 3dr5_A          153 LRRGGALVLADALLDGTIADQTRK-----DRDTQAARDADEYIRSIEGAH  197 (221)
T ss_dssp             EEEEEEEEETTTTGGGTCSCSSCC-----CHHHHHHHHHHHHHTTCTTEE
T ss_pred             cCCCcEEEEeCCCCCCcCCCCCCC-----ChHHHHHHHHHHHHhhCCCee
Confidence            999999999999999999887643     456789999999999999873

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.81  E-value=2.8e-19  Score=133.83  Aligned_cols=126  Identities=50%  Similarity=0.782  Sum_probs=106.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+..+..+.+   +||+||+|+++..+..+++.+.++|
T Consensus        95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~---~fD~I~~d~~~~~~~~~l~~~~~~L  171 (237)
T 3c3y_A           95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG---SYDFGFVDADKPNYIKYHERLMKLV  171 (237)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT---CEEEEEECSCGGGHHHHHHHHHHHE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC---CcCEEEECCchHHHHHHHHHHHHhc
Confidence            5799999999999999999999999977899999999998776532100014   8999999999889999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +|||+++++|++|+|.+..+....+...+..++.|++|++.+.++|+|+
T Consensus       172 ~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~  220 (237)
T 3c3y_A          172 KVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIE  220 (237)
T ss_dssp             EEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEE
T ss_pred             CCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeE
Confidence            9999999999999999987744333344567899999999999999863

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.80  E-value=4.9e-19  Score=133.50  Aligned_cols=126  Identities=45%  Similarity=0.698  Sum_probs=106.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+.....+.+   +||+||+|+.+..+..+++.+.++|
T Consensus       104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~---~fD~V~~d~~~~~~~~~l~~~~~~L  180 (247)
T 1sui_A          104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG---SYDFIFVDADKDNYLNYHKRLIDLV  180 (247)
T ss_dssp             TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT---CBSEEEECSCSTTHHHHHHHHHHHB
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC---CEEEEEEcCchHHHHHHHHHHHHhC
Confidence            5789999999999999999999999978999999999998765521100025   8999999998888999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhh-hhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEIL-RSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +|||+++++|++|.|.+..+....+... +..++++++|++.+.++|+++
T Consensus       181 kpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~  230 (247)
T 1sui_A          181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIE  230 (247)
T ss_dssp             CTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBC
T ss_pred             CCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeE
Confidence            9999999999999999988754322222 557889999999999999874

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.80  E-value=1.5e-19  Score=136.03  Aligned_cols=120  Identities=24%  Similarity=0.415  Sum_probs=105.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|++||+|+++++.|+++++..|+.++++++++|+.+.++.+..+. ..+   +||+||+|+....+..+++.+.++|
T Consensus        85 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~-~~~---~fD~V~~d~~~~~~~~~l~~~~~~L  160 (242)
T 3r3h_A           85 DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG-GEH---QFDFIFIDADKTNYLNYYELALKLV  160 (242)
T ss_dssp             TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH-CSS---CEEEEEEESCGGGHHHHHHHHHHHE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc-CCC---CEeEEEEcCChHHhHHHHHHHHHhc
Confidence            578999999999999999999999998899999999999877653210 015   8999999999888999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +|||+++++|++|.|.+..+...     ...++++++|++.+.++|+|+
T Consensus       161 kpGG~lv~d~~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~  204 (242)
T 3r3h_A          161 TPKGLIAIDNIFWDGKVIDPNDT-----SGQTREIKKLNQVIKNDSRVF  204 (242)
T ss_dssp             EEEEEEEEECSSSSSCSSCTTCC-----CHHHHHHHHHHHHHHTCCSEE
T ss_pred             CCCeEEEEECCccCCcccCcccc-----ChHHHHHHHHHHHHhhCCCEE
Confidence            99999999999999999887654     456789999999999999873

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.79  E-value=5.7e-19  Score=131.44  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHH-hhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALD-QLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~-~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ...+|+++|+|+++++.|+++++..|+.++++++++|+.+.++ .+      .+   +||+||+|+....+..+++.+.+
T Consensus        94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~---~fD~V~~~~~~~~~~~~l~~~~~  164 (232)
T 3ntv_A           94 DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------DK---VYDMIFIDAAKAQSKKFFEIYTP  164 (232)
T ss_dssp             TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TS---CEEEEEEETTSSSHHHHHHHHGG
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cC---CccEEEEcCcHHHHHHHHHHHHH
Confidence            4678999999999999999999999998899999999998766 54      36   89999999988889999999999


Q ss_pred             cccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           89 LFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        89 lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +|+|||+++++|++|.|.+..+....++..+...+++++|++.+.++|+++
T Consensus       165 ~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  215 (232)
T 3ntv_A          165 LLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYT  215 (232)
T ss_dssp             GEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             hcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeE
Confidence            999999999999999999988765234445677899999999999999863

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.78  E-value=1.5e-18  Score=130.54  Aligned_cols=117  Identities=20%  Similarity=0.272  Sum_probs=104.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+..    ..   +||+||+|++...+..+++.+.++|
T Consensus        88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~----~~---~fD~V~~d~~~~~~~~~l~~~~~~L  160 (248)
T 3tfw_A           88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE----CP---AFDLIFIDADKPNNPHYLRWALRYS  160 (248)
T ss_dssp             TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS----CC---CCSEEEECSCGGGHHHHHHHHHHTC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC----CC---CeEEEEECCchHHHHHHHHHHHHhc
Confidence            6789999999999999999999999988999999999998765421    24   7999999999888999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +|||+++++|++|.|.+..+...     +..++.+++|++.+.++|+|+
T Consensus       161 kpGG~lv~~~~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~  204 (248)
T 3tfw_A          161 RPGTLIIGDNVVRDGEVVNPQSA-----DERVQGVRQFIEMMGAEPRLT  204 (248)
T ss_dssp             CTTCEEEEECCSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTEE
T ss_pred             CCCeEEEEeCCCcCCcccCcccc-----chHHHHHHHHHHHHhhCCCEE
Confidence            99999999999999999887644     578899999999999999873

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.77  E-value=4.5e-18  Score=125.02  Aligned_cols=118  Identities=22%  Similarity=0.306  Sum_probs=104.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|+++++++.|++++...|+.++++++++|+.+.++.+....  ..   +||+||+|+....+..+++.+.++|
T Consensus        83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~---~fD~v~~d~~~~~~~~~l~~~~~~L  157 (223)
T 3duw_A           83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEK--YE---PFDFIFIDADKQNNPAYFEWALKLS  157 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT--CC---CCSEEEECSCGGGHHHHHHHHHHTC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC--CC---CcCEEEEcCCcHHHHHHHHHHHHhc
Confidence            579999999999999999999999998889999999998876653210  14   7999999999888899999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      +|||+++++++.+.|.+..+...     ...++.+++|++.+.++|++
T Consensus       158 ~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~  200 (223)
T 3duw_A          158 RPGTVIIGDNVVREGEVIDNTSN-----DPRVQGIRRFYELIAAEPRV  200 (223)
T ss_dssp             CTTCEEEEESCSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTE
T ss_pred             CCCcEEEEeCCCcCCcccCcccc-----chHHHHHHHHHHHHhhCCCe
Confidence            99999999999999988887644     46788999999999999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.77  E-value=3.5e-18  Score=125.61  Aligned_cols=120  Identities=25%  Similarity=0.320  Sum_probs=103.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+..+.. .+   +||+||+|++...+..+++.+.++|
T Consensus        89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~---~fD~v~~~~~~~~~~~~l~~~~~~L  164 (225)
T 3tr6_A           89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AW---QYDLIYIDADKANTDLYYEESLKLL  164 (225)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTC-TT---CEEEEEECSCGGGHHHHHHHHHHHE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccC-CC---CccEEEECCCHHHHHHHHHHHHHhc
Confidence            6789999999999999999999999988899999999988765521100 05   8999999998888999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +|||+++++|+.|.|.+..+...     ...++.+++|++.+.++|+++
T Consensus       165 ~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~  208 (225)
T 3tr6_A          165 REGGLIAVDNVLRRGQVADEENQ-----SENNQLIRLFNQKVYKDERVD  208 (225)
T ss_dssp             EEEEEEEEECSSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTEE
T ss_pred             CCCcEEEEeCCCcCCcccCcccc-----ChHHHHHHHHHHHHhcCCCeE
Confidence            99999999999999998887644     456789999999999999863

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.77  E-value=3.5e-18  Score=127.26  Aligned_cols=117  Identities=30%  Similarity=0.433  Sum_probs=103.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcc--cCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIH--FFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~--~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      +.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+...   .  +   +||+||+|+....+..+++.+.+
T Consensus        97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~---~~~~---~fD~V~~d~~~~~~~~~l~~~~~  170 (232)
T 3cbg_A           97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQG---KPLP---EFDLIFIDADKRNYPRYYEIGLN  170 (232)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTS---SSCC---CEEEEEECSCGGGHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc---CCCC---CcCEEEECCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999778999999999887665311   1  5   89999999988889999999999


Q ss_pred             cccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           89 LFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        89 lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      +|+|||+++++|+.|.|.+..+...     ++.++.+++|++.+.++|++
T Consensus       171 ~LkpgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~  215 (232)
T 3cbg_A          171 LLRRGGLMVIDNVLWHGKVTEVDPQ-----EAQTQVLQQFNRDLAQDERV  215 (232)
T ss_dssp             TEEEEEEEEEECTTGGGGGGCSSCC-----SHHHHHHHHHHHHHTTCTTE
T ss_pred             HcCCCeEEEEeCCCcCCccCCcccC-----ChHHHHHHHHHHHHhhCCCe
Confidence            9999999999999999999877643     57889999999999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.76  E-value=8.1e-18  Score=123.93  Aligned_cols=119  Identities=29%  Similarity=0.398  Sum_probs=103.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+..+. ...   +||+||+|++...+..+++.+.++|
T Consensus        94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-~~~---~~D~v~~d~~~~~~~~~l~~~~~~L  169 (229)
T 2avd_A           94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-EAG---TFDVAVVDADKENCSAYYERCLQLL  169 (229)
T ss_dssp             TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CTT---CEEEEEECSCSTTHHHHHHHHHHHE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-CCC---CccEEEECCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999997899999999998876653210 005   8999999998888899999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      +|||+++++|++|.|.+..+...     ++.++.+++|++.+.++|++
T Consensus       170 ~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~  212 (229)
T 2avd_A          170 RPGGILAVLRVLWRGKVLQPPKG-----DVAAECVRNLNERIRRDVRV  212 (229)
T ss_dssp             EEEEEEEEECCSGGGGGGSCCTT-----CHHHHHHHHHHHHHHHCTTE
T ss_pred             CCCeEEEEECCCcCCcccCcccC-----ChHHHHHHHHHHHHhhCCCE
Confidence            99999999999999998877543     57889999999999999986

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.68  E-value=5.8e-16  Score=115.24  Aligned_cols=120  Identities=30%  Similarity=0.398  Sum_probs=101.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh---------hhcc-cCCCceeEEEEcCCCcchH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD---------EKIH-FFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~---------~~~~-~~~~~fD~If~D~~~~~~~   80 (139)
                      +.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+...         .... +   +||+||++.....+.
T Consensus        85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~---~fD~I~~~~~~~~~~  161 (239)
T 2hnk_A           85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPS---SIDLFFLDADKENYP  161 (239)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTT---CEEEEEECSCGGGHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCC---CcCEEEEeCCHHHHH
Confidence            57899999999999999999999999778999999999876654210         0000 4   899999999888888


Q ss_pred             HHHHHHhhcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      .+++.+.++|+|||+++++++.|.|.+..+...     ...++.+++|++.+.+++++
T Consensus       162 ~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  214 (239)
T 2hnk_A          162 NYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ-----EPSTVGIRKFNELVYNDSLV  214 (239)
T ss_dssp             HHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTE
T ss_pred             HHHHHHHHHcCCCeEEEEEccccCCcccCcccc-----chHHHHHHHHHHHHhhCCCe
Confidence            999999999999999999999999988876543     46788999999999999876

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.66  E-value=2e-16  Score=115.46  Aligned_cols=112  Identities=16%  Similarity=0.165  Sum_probs=90.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|+|+++++.|+++++..++.++++++++|+.+.++..       .   .||+||+|+....+..+++.+.++|
T Consensus        81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-------~---~fD~v~~~~~~~~~~~~l~~~~~~L  150 (210)
T 3c3p_A           81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-------R---DIDILFMDCDVFNGADVLERMNRCL  150 (210)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-------C---SEEEEEEETTTSCHHHHHHHHGGGE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-------C---CCCEEEEcCChhhhHHHHHHHHHhc
Confidence            57899999999999999999999998778999999998876432       2   3999999998888999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      +|||+++++|+.|.|.+..+ ..     .+..+.+++|++.+.++|++
T Consensus       151 kpgG~lv~~~~~~~g~~~~~-~~-----~~~~~~~~~~~~~l~~~~~~  192 (210)
T 3c3p_A          151 AKNALLIAVNALRRGSVAES-HE-----DPETAALREFNHHLSRRRDF  192 (210)
T ss_dssp             EEEEEEEEESSSSCC------------------CCCHHHHHHTTCTTE
T ss_pred             CCCeEEEEECccccCcccCc-cc-----chHHHHHHHHHHHHhhCCCe
Confidence            99999999999999887744 22     56788899999999998875

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.59  E-value=1.4e-15  Score=112.51  Aligned_cols=120  Identities=22%  Similarity=0.283  Sum_probs=84.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|+|+++++.|++++...|+.++++++++|+.+.++....    .+   +||+|+++.....+..+++.+.++|
T Consensus        78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~----~~---~fD~I~~~~~~~~~~~~l~~~~~~L  150 (233)
T 2gpy_A           78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL----YP---LFDVLFIDAAKGQYRRFFDMYSPMV  150 (233)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT----SC---CEEEEEEEGGGSCHHHHHHHHGGGE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc----CC---CccEEEECCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999977899999999886554310    25   8999999998778889999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      +|||++++++++|.|.+..+.. .+...+.....+++|+..+.+++.|
T Consensus       151 ~pgG~lv~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~  197 (233)
T 2gpy_A          151 RPGGLILSDNVLFRGLVAETDI-EHKRHKQLATKIDTYNQWLLEHPQY  197 (233)
T ss_dssp             EEEEEEEEETTTC--------------------------CTTTTCTTE
T ss_pred             CCCeEEEEEcCCcCCccCCccc-cccchhHHHHHHHHHHHHHHhCCCe
Confidence            9999999999999987765542 1223345678899999999988875

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.58  E-value=8.3e-15  Score=107.80  Aligned_cols=104  Identities=17%  Similarity=0.261  Sum_probs=83.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH---HHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN---YRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~---~~~~~~   87 (139)
                      +.+|+++|+|+++++.|++|++..|+.++++++++|+.+.++.+..+.+ .+   +||+||+|+....+..   +++.+ 
T Consensus        83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~-~~---~fD~V~~d~~~~~~~~~~~~~~~~-  157 (221)
T 3u81_A           83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD-VD---TLDMVFLDHWKDRYLPDTLLLEKC-  157 (221)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSC-CC---CCSEEEECSCGGGHHHHHHHHHHT-
T ss_pred             CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcC-CC---ceEEEEEcCCcccchHHHHHHHhc-
Confidence            6789999999999999999999999988899999999988765421000 15   8999999998777764   44445 


Q ss_pred             hcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253           88 TLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI  138 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (139)
                      ++|+|||+++++++.+.+.                   ++|++++.++|+|
T Consensus       158 ~~LkpgG~lv~~~~~~~~~-------------------~~~~~~l~~~~~~  189 (221)
T 3u81_A          158 GLLRKGTVLLADNVIVPGT-------------------PDFLAYVRGSSSF  189 (221)
T ss_dssp             TCCCTTCEEEESCCCCCCC-------------------HHHHHHHHHCTTE
T ss_pred             cccCCCeEEEEeCCCCcch-------------------HHHHHHHhhCCCc
Confidence            8999999999999987542                   4677777777765

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.42  E-value=3.2e-13  Score=99.45  Aligned_cols=89  Identities=8%  Similarity=-0.014  Sum_probs=69.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCC--CCcEEEEeCChHHH--------------HHhhHH---hhhcccCCCceeEEE
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEV--DLKINLMESRALPA--------------LDQLLK---DEKIHFFFENFDYAF   71 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~--~~~i~~~~~da~~~--------------l~~~~~---~~~~~~~~~~fD~If   71 (139)
                      +.+|++||.|++..+.|++|++.+|+  .++++++.+|+.+.              ++.+..   ......   +||+||
T Consensus        51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~---~fDlIf  127 (202)
T 3cvo_A           51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFR---HPDVVL  127 (202)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCC---CCSEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCC---CCCEEE
Confidence            57899999999999999999999998  88999999996542              111110   000025   899999


Q ss_pred             EcCCCcchHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253           72 VDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        72 ~D~~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                      +|+.+.  ..++..++++|++||+|++||+.+.
T Consensus       128 IDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r  158 (202)
T 3cvo_A          128 VDGRFR--VGCALATAFSITRPVTLLFDDYSQR  158 (202)
T ss_dssp             ECSSSH--HHHHHHHHHHCSSCEEEEETTGGGC
T ss_pred             EeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCC
Confidence            999864  3667778899999999999997654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.32  E-value=9e-12  Score=99.31  Aligned_cols=93  Identities=13%  Similarity=0.266  Sum_probs=75.0

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---   77 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---   77 (139)
                      |+++.+..++ +|++||+|+++++.|++|++.+|+.+ +++++++|+.+.++.+..+   ..   +||+|++|++..   
T Consensus       226 ~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~---~~---~fD~Ii~DPP~~~~~  299 (385)
T 2b78_A          226 FSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HL---TYDIIIIDPPSFARN  299 (385)
T ss_dssp             HHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCC---
T ss_pred             HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh---CC---CccEEEECCCCCCCC
Confidence            5677776555 89999999999999999999999965 8999999999987765322   35   899999998752   


Q ss_pred             ---------chHHHHHHHhhcccCCeEEEEeCC
Q 044253           78 ---------NYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        78 ---------~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                               .+..++..+.++|+|||++++...
T Consensus       300 ~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          300 KKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                     134456677899999999988643

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.32  E-value=1.2e-11  Score=88.53  Aligned_cols=85  Identities=9%  Similarity=0.036  Sum_probs=70.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----hHHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----YRNYRETL   86 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----~~~~~~~~   86 (139)
                      ..+|+++|+|+++++.|++|++.+++ ++++++++|+.+.+....     .+   +||+|++|++...    +...++.+
T Consensus        67 ~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-----~~---~fD~i~~~~p~~~~~~~~~~~l~~~  137 (189)
T 3p9n_A           67 AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGT-----TS---PVDLVLADPPYNVDSADVDAILAAL  137 (189)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCC-----SS---CCSEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhcc-----CC---CccEEEECCCCCcchhhHHHHHHHH
Confidence            34799999999999999999999998 689999999999865432     35   8999999987543    45677778


Q ss_pred             hh--cccCCeEEEEeCCCCC
Q 044253           87 MT--LFKVGGIVIYDNTLWG  104 (139)
Q Consensus        87 ~~--lL~~gG~ii~~~~~~~  104 (139)
                      .+  +|+|||++++......
T Consensus       138 ~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          138 GTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             HHSSSCCTTCEEEEEEETTS
T ss_pred             HhcCccCCCeEEEEEecCCC
Confidence            77  9999999999765443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.30  E-value=2.4e-12  Score=98.99  Aligned_cols=87  Identities=13%  Similarity=0.090  Sum_probs=74.8

Q ss_pred             CCchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253            2 PFNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus         2 ~~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~   80 (139)
                      ||++++|..+ ++|+++|+|+.+++.+++|++.+|+.++++++++|+.++..        +.   .||.|+++++.. ..
T Consensus       138 ~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~---~~D~Vi~~~p~~-~~  205 (278)
T 3k6r_A          138 HLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------EN---IADRILMGYVVR-TH  205 (278)
T ss_dssp             TTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CS---CEEEEEECCCSS-GG
T ss_pred             HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------cc---CCCEEEECCCCc-HH
Confidence            7999999886 58999999999999999999999999999999999987632        35   899999998653 34


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+++.+.++|++||+|.+..
T Consensus       206 ~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          206 EFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             GGHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEEe
Confidence            57788889999999997643

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.29  E-value=1.9e-11  Score=94.16  Aligned_cols=89  Identities=15%  Similarity=0.132  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHHHHHhhcccCCeEEEEeC
Q 044253           23 SSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        23 ~~~~Ar~n~~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ..+.+++|+++.|+ .++++++.|++.+.++++.     ..   +||+||+|+++ ..+..+++.+.++|++||+|++||
T Consensus       173 ~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~-----~~---~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          173 SEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP-----ID---TLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             CHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC-----CC---CEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             HHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC-----CC---CEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcC
Confidence            57789999999999 4899999999999887652     35   89999999986 345678999999999999999999


Q ss_pred             CCCCcccccccccCchhhhhchHHHHHHHHHHh
Q 044253          101 TLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA  133 (139)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (139)
                      +.+          +    .+.++++++|++...
T Consensus       245 ~~~----------~----~G~~~Av~Ef~~~~~  263 (282)
T 2wk1_A          245 YMM----------C----PPCKDAVDEYRAKFD  263 (282)
T ss_dssp             CTT----------C----HHHHHHHHHHHHHTT
T ss_pred             CCC----------C----HHHHHHHHHHHHhcC
Confidence            843          1    245789999987643

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.29  E-value=1.3e-11  Score=96.83  Aligned_cols=94  Identities=9%  Similarity=0.004  Sum_probs=75.7

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----   77 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----   77 (139)
                      |+++.+..+++|++||+|+.+++.|++|++.+++.+ +++++++|+.+++......   ..   +||+|++|++.-    
T Consensus       167 ~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~---~~---~fD~Ii~dPP~~~~~~  240 (332)
T 2igt_A          167 ASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR---GS---TYDIILTDPPKFGRGT  240 (332)
T ss_dssp             HHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH---TC---CBSEEEECCCSEEECT
T ss_pred             HHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc---CC---CceEEEECCccccCCc
Confidence            566777777899999999999999999999999865 5999999999987653221   35   899999998731    


Q ss_pred             ---------chHHHHHHHhhcccCCeEEEEeCCC
Q 044253           78 ---------NYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        78 ---------~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                               .+..+++.+.++|+|||++++....
T Consensus       241 ~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          241 HGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             TCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence                     2456788888999999997775443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.26  E-value=1.8e-11  Score=104.30  Aligned_cols=91  Identities=18%  Similarity=0.232  Sum_probs=76.7

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----   76 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----   76 (139)
                      |+++++..++ +|++||+|+.+++.|++|++.+|+. ++++++++|+.++++..      .+   +||+|++|++.    
T Consensus       553 ~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------~~---~fD~Ii~DPP~f~~~  623 (703)
T 3v97_A          553 ATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA------NE---QFDLIFIDPPTFSNS  623 (703)
T ss_dssp             HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------CC---CEEEEEECCCSBC--
T ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc------CC---CccEEEECCccccCC
Confidence            5677776666 5999999999999999999999996 68999999999987653      46   89999999964    


Q ss_pred             ----------cchHHHHHHHhhcccCCeEEEEeCCC
Q 044253           77 ----------DNYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        77 ----------~~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                                ..|..++..+.++|+|||++++....
T Consensus       624 ~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          624 KRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             -----CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence                      13566788888999999999987655

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.26  E-value=2.3e-11  Score=96.96  Aligned_cols=92  Identities=23%  Similarity=0.281  Sum_probs=75.3

Q ss_pred             Cchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----
Q 044253            3 FNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----   76 (139)
Q Consensus         3 ~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----   76 (139)
                      |++..+..+ .+|+++|+|+.+++.|++|++.+|+.++++++++|+.+.+..+..+   ..   +||+|++|++.     
T Consensus       231 ~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~---~~---~fD~Vi~dpP~~~~~~  304 (396)
T 2as0_A          231 FAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GE---KFDIVVLDPPAFVQHE  304 (396)
T ss_dssp             HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCSCSSG
T ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh---CC---CCCEEEECCCCCCCCH
Confidence            556667664 4899999999999999999999998668999999999987654322   35   89999999975     


Q ss_pred             -------cchHHHHHHHhhcccCCeEEEEeC
Q 044253           77 -------DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        77 -------~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                             ..+..++..+.++|+|||++++..
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  335 (396)
T 2as0_A          305 KDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  335 (396)
T ss_dssp             GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                   345677888899999999887653

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.25  E-value=2.7e-11  Score=96.26  Aligned_cols=91  Identities=23%  Similarity=0.311  Sum_probs=75.1

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------   76 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------   76 (139)
                      |++..+....+|+++|+|+.+++.|++|++.+|+.+ ++++++|+.+.+..+...   ..   +||+|++|++.      
T Consensus       223 ~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~---~~---~fD~Ii~dpP~~~~~~~  295 (382)
T 1wxx_A          223 FALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE---GE---RFDLVVLDPPAFAKGKK  295 (382)
T ss_dssp             HHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCSCCSTT
T ss_pred             HHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc---CC---CeeEEEECCCCCCCChh
Confidence            456666667799999999999999999999999864 999999999987654322   35   89999999975      


Q ss_pred             ------cchHHHHHHHhhcccCCeEEEEeC
Q 044253           77 ------DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        77 ------~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                            ..+..++..+.++|+|||++++..
T Consensus       296 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  325 (382)
T 1wxx_A          296 DVERAYRAYKEVNLRAIKLLKEGGILATAS  325 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                  345667888899999999998754

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.25  E-value=2.8e-11  Score=96.48  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=76.9

Q ss_pred             Cchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253            3 FNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----   76 (139)
Q Consensus         3 ~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----   76 (139)
                      |++..+..+ .+|+++|+|+++++.|++|++.+|+ .++++++++|+.+.+..+...   ..   +||+|++|++.    
T Consensus       234 ~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~---~~---~fD~Ii~dpP~~~~~  307 (396)
T 3c0k_A          234 FAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE---KFDVIVMDPPKFVEN  307 (396)
T ss_dssp             HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT---TC---CEEEEEECCSSTTTC
T ss_pred             HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc---CC---CCCEEEECCCCCCCC
Confidence            567777764 5899999999999999999999998 668999999999987654321   25   89999999875    


Q ss_pred             --------cchHHHHHHHhhcccCCeEEEEeC
Q 044253           77 --------DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        77 --------~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                              ..+..++..+.++|+|||++++..
T Consensus       308 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  339 (396)
T 3c0k_A          308 KSQLMGACRGYKDINMLAIQLLNEGGILLTFS  339 (396)
T ss_dssp             SSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                    456778888999999999998754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.23  E-value=2.6e-11  Score=97.17  Aligned_cols=88  Identities=19%  Similarity=0.135  Sum_probs=74.9

Q ss_pred             Cchhhhhh--h-cceeEEeCCccHHHHHHHHHHHcCCCCc-EEEEeCChHHHHH-hhHHhhhcccCCCceeEEEEcCCCc
Q 044253            3 FNLESTFF--I-YFIVAIDVSRESSETGLPIIKKVEVDLK-INLMESRALPALD-QLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         3 ~~~~~~~~--~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~-i~~~~~da~~~l~-~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      |+++.+..  + .+|+++|+|+++++.+++|++.+|+.++ ++++++|+.+++. ..      ..   +||+|++||. .
T Consensus        66 ~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~---~fD~V~lDP~-g  135 (392)
T 3axs_A           66 RAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GF---GFDYVDLDPF-G  135 (392)
T ss_dssp             HHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SS---CEEEEEECCS-S
T ss_pred             HHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CC---CCcEEEECCC-c
Confidence            66777764  3 6899999999999999999999999777 9999999999886 54      35   8999999993 3


Q ss_pred             chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ....+++.+.++|++||++++..
T Consensus       136 ~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          136 TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHhCCCCEEEEEe
Confidence            45678899999999999998754

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.22  E-value=4e-11  Score=84.61  Aligned_cols=89  Identities=19%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             hhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHH
Q 044253            6 ESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNY   82 (139)
Q Consensus         6 ~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~   82 (139)
                      ..+.. ..+|+++|+|+++++.|+++++..++.++++++++|+.+.++..      ..   +||+|+++++.  ..+...
T Consensus        48 ~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~---~fD~i~~~~~~~~~~~~~~  118 (177)
T 2esr_A           48 EAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TG---RFDLVFLDPPYAKETIVAT  118 (177)
T ss_dssp             HHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CS---CEEEEEECCSSHHHHHHHH
T ss_pred             HHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------cC---CCCEEEECCCCCcchHHHH
Confidence            33434 35899999999999999999999998778999999999876543      35   89999999874  334556


Q ss_pred             HHHHh--hcccCCeEEEEeCCCC
Q 044253           83 RETLM--TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        83 ~~~~~--~lL~~gG~ii~~~~~~  103 (139)
                      ++.+.  ++|+|||++++.....
T Consensus       119 ~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          119 IEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             HHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHHHHhCCCcCCCcEEEEEECCc
Confidence            67776  8999999999865443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.22  E-value=2.6e-11  Score=88.08  Aligned_cols=93  Identities=11%  Similarity=0.099  Sum_probs=71.0

Q ss_pred             chhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCc-eeEEEEcCCC--cc
Q 044253            4 NLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFEN-FDYAFVDAHK--DN   78 (139)
Q Consensus         4 ~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~-fD~If~D~~~--~~   78 (139)
                      +++.+..+ .+|+++|+|+++++.|++|++.+++. ++++++++|+.+.+..+.     .+   + ||+|++|++.  ..
T Consensus        68 ~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~---~~fD~I~~~~~~~~~~  139 (201)
T 2ift_A           68 GFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ-----NQ---PHFDVVFLDPPFHFNL  139 (201)
T ss_dssp             HHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-----SS---CCEEEEEECCCSSSCH
T ss_pred             HHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-----cC---CCCCEEEECCCCCCcc
Confidence            34433334 58999999999999999999999984 589999999988754321     25   7 9999999872  34


Q ss_pred             hHHHHHHH--hhcccCCeEEEEeCCCCC
Q 044253           79 YRNYRETL--MTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        79 ~~~~~~~~--~~lL~~gG~ii~~~~~~~  104 (139)
                      +...++.+  .++|+|||++++......
T Consensus       140 ~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          140 AEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             HHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            55677777  567999999998654443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.21  E-value=3.7e-11  Score=96.23  Aligned_cols=86  Identities=16%  Similarity=0.211  Sum_probs=72.4

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------   76 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------   76 (139)
                      |+++.+..+++|+++|+|+.+++.|++|++.+|+..  ++.++|+.+.++.+      ..   .||+|++|++.      
T Consensus       228 ~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~---~fD~Ii~dpP~f~~~~~  296 (393)
T 4dmg_A          228 FALRAARKGAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------EG---PFHHVLLDPPTLVKRPE  296 (393)
T ss_dssp             HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------CC---CEEEEEECCCCCCSSGG
T ss_pred             HHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------cC---CCCEEEECCCcCCCCHH
Confidence            677788778889999999999999999999999864  56699999987654      35   69999999975      


Q ss_pred             ------cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 ------DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 ------~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                            ..+..++..+.++|+|||++++.
T Consensus       297 ~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~  325 (393)
T 4dmg_A          297 ELPAMKRHLVDLVREALRLLAEEGFLWLS  325 (393)
T ss_dssp             GHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                  24567888889999999999853

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.21  E-value=8.3e-11  Score=83.19  Aligned_cols=85  Identities=14%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHH--h
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETL--M   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~--~   87 (139)
                      .+|+++|+|+++++.|++|+...++.++++++++|+.+.+..+...   .+   +||+|+++++.  ......+..+  .
T Consensus        68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~---~fD~i~~~~~~~~~~~~~~~~~l~~~  141 (187)
T 2fhp_A           68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE---KL---QFDLVLLDPPYAKQEIVSQLEKMLER  141 (187)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCGGGCCHHHHHHHHHHT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc---CC---CCCEEEECCCCCchhHHHHHHHHHHh
Confidence            6899999999999999999999998778999999999876543211   25   89999999873  3445667766  7


Q ss_pred             hcccCCeEEEEeCCC
Q 044253           88 TLFKVGGIVIYDNTL  102 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~  102 (139)
                      ++|+|||++++....
T Consensus       142 ~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          142 QLLTNEAVIVCETDK  156 (187)
T ss_dssp             TCEEEEEEEEEEEET
T ss_pred             cccCCCCEEEEEeCC
Confidence            889999999986443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.21  E-value=3.5e-11  Score=93.24  Aligned_cols=79  Identities=15%  Similarity=0.232  Sum_probs=70.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|+++|+|+++++.||++++..|+ ++++++++|+.++ +        ..   +||+||+++...+...+++.+.+.
T Consensus       145 ~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--------d~---~FDvV~~~a~~~d~~~~l~el~r~  211 (298)
T 3fpf_A          145 YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--------GL---EFDVLMVAALAEPKRRVFRNIHRY  211 (298)
T ss_dssp             TCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--------GC---CCSEEEECTTCSCHHHHHHHHHHH
T ss_pred             cCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--------CC---CcCEEEECCCccCHHHHHHHHHHH
Confidence            478999999999999999999999999 7999999999874 2        35   899999988777788999999999


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+|||++++.+.
T Consensus       212 LkPGG~Lvv~~~  223 (298)
T 3fpf_A          212 VDTETRIIYRTY  223 (298)
T ss_dssp             CCTTCEEEEEEC
T ss_pred             cCCCcEEEEEcC
Confidence            999999999764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.20  E-value=5.9e-11  Score=86.25  Aligned_cols=87  Identities=15%  Similarity=0.131  Sum_probs=68.4

Q ss_pred             hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHH
Q 044253            5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRN   81 (139)
Q Consensus         5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~   81 (139)
                      ++.+..+ .+|+++|+|+++++.|++|++.+++ ++++++++|+.+.++..      ..   +||+|++|++  ...+..
T Consensus        70 ~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~------~~---~fD~V~~~~p~~~~~~~~  139 (202)
T 2fpo_A           70 LEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GT---PHNIVFVDPPFRRGLLEE  139 (202)
T ss_dssp             HHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CC---CEEEEEECCSSSTTTHHH
T ss_pred             HHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc------CC---CCCEEEECCCCCCCcHHH
Confidence            4333344 4899999999999999999999998 68999999999876432      35   8999999987  234556


Q ss_pred             HHHHHhh--cccCCeEEEEeCC
Q 044253           82 YRETLMT--LFKVGGIVIYDNT  101 (139)
Q Consensus        82 ~~~~~~~--lL~~gG~ii~~~~  101 (139)
                      .++.+.+  +|+|||++++...
T Consensus       140 ~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          140 TINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             HHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHHHHHhcCccCCCcEEEEEEC
Confidence            6777754  5999999988644

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.17  E-value=1.2e-10  Score=81.08  Aligned_cols=91  Identities=13%  Similarity=0.101  Sum_probs=71.2

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYR   83 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~   83 (139)
                      +..+..+.+|+++|+|+++++.|++|+...++  +++++++|+.+.++....+   .+   +||+|+++++. ......+
T Consensus        57 ~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~---~~D~i~~~~~~~~~~~~~~  128 (171)
T 1ws6_A           57 LEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ---GE---RFTVAFMAPPYAMDLAALF  128 (171)
T ss_dssp             HHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT---TC---CEEEEEECCCTTSCTTHHH
T ss_pred             HHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc---CC---ceEEEEECCCCchhHHHHH
Confidence            34455566799999999999999999999887  7999999999876554321   24   79999999764 4456677


Q ss_pred             HHHh--hcccCCeEEEEeCCCC
Q 044253           84 ETLM--TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        84 ~~~~--~lL~~gG~ii~~~~~~  103 (139)
                      +.+.  ++|+|||++++.....
T Consensus       129 ~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          129 GELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             HHHHHHTCEEEEEEEEEEEETT
T ss_pred             HHHHhhcccCCCcEEEEEeCCc
Confidence            7777  9999999999864433

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.17  E-value=5.7e-11  Score=86.61  Aligned_cols=86  Identities=12%  Similarity=0.061  Sum_probs=71.7

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE   84 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~   84 (139)
                      +..+..+.+|+++|+|+++++.|+++++.+|+.++++++++|+.+.+..       ..   +||+|++++.. ... +++
T Consensus        71 ~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-------~~---~~D~v~~~~~~-~~~-~l~  138 (204)
T 3njr_A           71 VEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-------LP---LPEAVFIGGGG-SQA-LYD  138 (204)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-------SC---CCSEEEECSCC-CHH-HHH
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-------CC---CCCEEEECCcc-cHH-HHH
Confidence            4455557899999999999999999999999976899999999875433       25   79999999854 445 899


Q ss_pred             HHhhcccCCeEEEEeCCC
Q 044253           85 TLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~  102 (139)
                      .+.+.|+|||++++....
T Consensus       139 ~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          139 RLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             HHHHHSCTTCEEEEEECS
T ss_pred             HHHHhcCCCcEEEEEecC
Confidence            999999999999986543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.15  E-value=3.2e-11  Score=91.97  Aligned_cols=89  Identities=13%  Similarity=0.107  Sum_probs=74.8

Q ss_pred             CCchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253            2 PFNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus         2 ~~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~   80 (139)
                      .|+++.+..+. +|+++|+|+++++.|++|++.+++.++++++++|+.+...        ..   +||+|++|++. ...
T Consensus       138 ~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~---~fD~Vi~~~p~-~~~  205 (278)
T 2frn_A          138 HLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------EN---IADRILMGYVV-RTH  205 (278)
T ss_dssp             TTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CS---CEEEEEECCCS-SGG
T ss_pred             HHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cC---CccEEEECCch-hHH
Confidence            46778887776 5999999999999999999999998789999999987643        25   89999999874 345


Q ss_pred             HHHHHHhhcccCCeEEEEeCCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      .+++.+.+.|+|||++++....
T Consensus       206 ~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          206 EFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             GGHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCCeEEEEEEee
Confidence            6788899999999999975443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.13  E-value=7e-11  Score=88.76  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=65.6

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---------------
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---------------   77 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---------------   77 (139)
                      +|+++|+++++++.|++|+..+++.++++++++|+.+....+.     .+   +||+|+++++..               
T Consensus        74 ~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~-----~~---~fD~Ii~npPy~~~~~~~~~~~~~~~~  145 (259)
T 3lpm_A           74 KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP-----KE---RADIVTCNPPYFATPDTSLKNTNEHFR  145 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC-----TT---CEEEEEECCCC----------------
T ss_pred             cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc-----cC---CccEEEECCCCCCCccccCCCCchHHH
Confidence            8999999999999999999999998899999999988743221     25   899999987642               


Q ss_pred             --------chHHHHHHHhhcccCCeEEEE
Q 044253           78 --------NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 --------~~~~~~~~~~~lL~~gG~ii~   98 (139)
                              .+..+++.+.++|+|||++++
T Consensus       146 ~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          146 IARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             -------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence                    124578888899999999987

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.13  E-value=7.7e-11  Score=85.12  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|+|+++++.|+++++..|+ ++++++++|+.+.+..       ..   +||+|+++.....+..+++.+.+.|+
T Consensus        65 ~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~---~~D~i~~~~~~~~~~~~l~~~~~~Lk  133 (204)
T 3e05_A           65 GRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDD-------LP---DPDRVFIGGSGGMLEEIIDAVDRRLK  133 (204)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTT-------SC---CCSEEEESCCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhc-------CC---CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            7899999999999999999999998 6899999999765432       25   89999999876678889999999999


Q ss_pred             CCeEEEEeCC
Q 044253           92 VGGIVIYDNT  101 (139)
Q Consensus        92 ~gG~ii~~~~  101 (139)
                      |||++++...
T Consensus       134 pgG~l~~~~~  143 (204)
T 3e05_A          134 SEGVIVLNAV  143 (204)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCeEEEEEec
Confidence            9999998643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.11  E-value=1.3e-10  Score=89.98  Aligned_cols=103  Identities=12%  Similarity=0.162  Sum_probs=76.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH--cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK--VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~--~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~   80 (139)
                      ..+|++||+|+++++.|++++..  .++ .++++++++|+.++++..      .+   +||+|++|+...       ...
T Consensus       119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~l~~~  189 (304)
T 2o07_A          119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------QD---AFDVIITDSSDPMGPAESLFKE  189 (304)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------SS---CEEEEEEECC-----------C
T ss_pred             CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------CC---CceEEEECCCCCCCcchhhhHH
Confidence            36899999999999999999876  354 468999999999987653      46   899999997532       234


Q ss_pred             HHHHHHhhcccCCeEEEEeCC-CCCcccccccccCchhhhhchHHHHHHHHHHhhC
Q 044253           81 NYRETLMTLFKVGGIVIYDNT-LWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASS  135 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (139)
                      .+++.+.++|+|||++++++. .|..             ....+.++++++.+..+
T Consensus       190 ~~l~~~~~~LkpgG~lv~~~~~~~~~-------------~~~~~~~~~~l~~~f~~  232 (304)
T 2o07_A          190 SYYQLMKTALKEDGVLCCQGECQWLH-------------LDLIKEMRQFCQSLFPV  232 (304)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECTTTC-------------HHHHHHHHHHHHHHCSE
T ss_pred             HHHHHHHhccCCCeEEEEecCCcccc-------------hHHHHHHHHHHHHhCCC
Confidence            678899999999999999763 3321             13455667777666543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.06  E-value=1.5e-10  Score=82.15  Aligned_cols=85  Identities=12%  Similarity=0.051  Sum_probs=65.2

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--------
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--------   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--------   76 (139)
                      +..+..+.+|+++|+|+++++.|+++++..|+ +++++++++.... ....     .+   +||+|+++.+.        
T Consensus        38 ~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l-~~~~-----~~---~fD~v~~~~~~~~~~~~~~  107 (185)
T 3mti_A           38 AFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENL-DHYV-----RE---PIRAAIFNLGYLPSADKSV  107 (185)
T ss_dssp             HHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGG-GGTC-----CS---CEEEEEEEEC---------
T ss_pred             HHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHH-Hhhc-----cC---CcCEEEEeCCCCCCcchhc
Confidence            34444578999999999999999999999998 6899999877654 2221     35   89999988321        


Q ss_pred             ----cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 ----DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 ----~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                          ......++.+.++|+|||++++.
T Consensus       108 ~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A          108 ITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             --CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence                12235678888999999999874

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.06  E-value=8.3e-10  Score=77.81  Aligned_cols=83  Identities=22%  Similarity=0.189  Sum_probs=70.6

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      +....+|+++|+|+++++.|++++...+..++++++++|+.+.++.       ..   +||+|+++........+++.+.
T Consensus        52 ~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~---~~D~v~~~~~~~~~~~~l~~~~  121 (192)
T 1l3i_A           52 AGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-------IP---DIDIAVVGGSGGELQEILRIIK  121 (192)
T ss_dssp             HTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-------SC---CEEEEEESCCTTCHHHHHHHHH
T ss_pred             HHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-------CC---CCCEEEECCchHHHHHHHHHHH
Confidence            3334789999999999999999999999867899999999875432       25   8999999987667788999999


Q ss_pred             hcccCCeEEEEeC
Q 044253           88 TLFKVGGIVIYDN  100 (139)
Q Consensus        88 ~lL~~gG~ii~~~  100 (139)
                      ++|+|||.+++..
T Consensus       122 ~~l~~gG~l~~~~  134 (192)
T 1l3i_A          122 DKLKPGGRIIVTA  134 (192)
T ss_dssp             HTEEEEEEEEEEE
T ss_pred             HhcCCCcEEEEEe
Confidence            9999999999854

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.06  E-value=2.7e-10  Score=88.71  Aligned_cols=81  Identities=15%  Similarity=0.244  Sum_probs=64.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------cch-H
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------DNY-R   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------~~~-~   80 (139)
                      ..+|++||+|+++++.|++++...  ++ .++++++++|+.+.++..      .+   +||+|++|+..      ..+ .
T Consensus       132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~l~t~  202 (314)
T 2b2c_A          132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KN---EFDVIITDSSDPVGPAESLFGQ  202 (314)
T ss_dssp             CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TT---CEEEEEECCC------------
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------CC---CceEEEEcCCCCCCcchhhhHH
Confidence            468999999999999999998754  44 468999999999987642      46   89999999832      112 5


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+++.+.++|+|||++++++
T Consensus       203 ~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          203 SYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             -HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHhhcCCCeEEEEEC
Confidence            78889999999999999876

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.05  E-value=2.8e-10  Score=86.56  Aligned_cols=87  Identities=11%  Similarity=0.131  Sum_probs=72.9

Q ss_pred             CCchhhhhhh--cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            2 PFNLESTFFI--YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         2 ~~~~~~~~~~--~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      .|+++.+...  .+|+++|+|+++++.|++|++.+++. +++++++|+.+. +.       ..   +||+|++|++. .+
T Consensus       132 ~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~-~~-------~~---~~D~Vi~d~p~-~~  198 (272)
T 3a27_A          132 YFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV-EL-------KD---VADRVIMGYVH-KT  198 (272)
T ss_dssp             TTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC-CC-------TT---CEEEEEECCCS-SG
T ss_pred             HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc-Cc-------cC---CceEEEECCcc-cH
Confidence            4677777764  49999999999999999999999985 689999999876 32       25   89999999986 56


Q ss_pred             HHHHHHHhhcccCCeEEEEeCC
Q 044253           80 RNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      ..++..+.+.|+|||++++...
T Consensus       199 ~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          199 HKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEEc
Confidence            6788888999999999987543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.04  E-value=7.1e-10  Score=82.24  Aligned_cols=82  Identities=12%  Similarity=0.085  Sum_probs=67.4

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+.+|++||+|+++++.|+++++..|+. +++++++|+.+.......    .+   +||+|+++.. ..+..+++.+.+
T Consensus        92 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~----~~---~fD~V~~~~~-~~~~~~l~~~~~  162 (240)
T 1xdz_A           92 FPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDV----RE---SYDIVTARAV-ARLSVLSELCLP  162 (240)
T ss_dssp             CTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTT----TT---CEEEEEEECC-SCHHHHHHHHGG
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccc----cC---CccEEEEecc-CCHHHHHHHHHH
Confidence            45678999999999999999999999985 599999999875311000    25   8999999874 567889999999


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      +|+|||++++.
T Consensus       163 ~LkpgG~l~~~  173 (240)
T 1xdz_A          163 LVKKNGLFVAL  173 (240)
T ss_dssp             GEEEEEEEEEE
T ss_pred             hcCCCCEEEEE
Confidence            99999999874

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.04  E-value=5.7e-10  Score=87.55  Aligned_cols=87  Identities=17%  Similarity=0.289  Sum_probs=69.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~   80 (139)
                      ..+|++||+|+++++.|++++...  |+ .++++++++|+.++++...     .+   +||+|++|+...       .+.
T Consensus       144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~-----~~---~fDlIi~d~~~p~~~~~~l~~~  215 (334)
T 1xj5_A          144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-----EG---SYDAVIVDSSDPIGPAKELFEK  215 (334)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-----TT---CEEEEEECCCCTTSGGGGGGSH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhcc-----CC---CccEEEECCCCccCcchhhhHH
Confidence            468999999999999999998763  55 3689999999999876532     35   899999987421       146


Q ss_pred             HHHHHHhhcccCCeEEEEe-CCCCCc
Q 044253           81 NYRETLMTLFKVGGIVIYD-NTLWGG  105 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~-~~~~~~  105 (139)
                      .+++.+.++|+|||+++++ +..|.+
T Consensus       216 ~~l~~~~~~LkpgG~lv~~~~~~~~~  241 (334)
T 1xj5_A          216 PFFQSVARALRPGGVVCTQAESLWLH  241 (334)
T ss_dssp             HHHHHHHHHEEEEEEEEEECCCTTTC
T ss_pred             HHHHHHHHhcCCCcEEEEecCCcccc
Confidence            7899999999999999997 555543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.02  E-value=3e-10  Score=83.17  Aligned_cols=84  Identities=19%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             hhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----
Q 044253            5 LESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----   78 (139)
Q Consensus         5 ~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----   78 (139)
                      +..+.. ..+|+++|+|+++++.|++|+..+++  +++++++|+... ..+.     ++   +||+|+++++...     
T Consensus        72 ~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~~~~-----~~---~fD~I~~npp~~~~~~~~  140 (230)
T 3evz_A           72 LMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGII-KGVV-----EG---TFDVIFSAPPYYDKPLGR  140 (230)
T ss_dssp             HHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSS-TTTC-----CS---CEEEEEECCCCC------
T ss_pred             HHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhh-hhcc-----cC---ceeEEEECCCCcCCcccc
Confidence            344444 68999999999999999999999998  799999997432 1221     35   8999999975321     


Q ss_pred             -----------------hHHHHHHHhhcccCCeEEEEe
Q 044253           79 -----------------YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 -----------------~~~~~~~~~~lL~~gG~ii~~   99 (139)
                                       +..+++.+.++|+|||++++-
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          141 VLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             ---------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence                             366788899999999999873

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.02  E-value=6.1e-10  Score=84.96  Aligned_cols=81  Identities=11%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------hH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------YR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------~~   80 (139)
                      ..+|++||+|+++++.|++++...  ++ .++++++++|+.++++..      .+   +||+|++|+....       ..
T Consensus        99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~l~~~  169 (275)
T 1iy9_A           99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------EN---QYDVIMVDSTEPVGPAVNLFTK  169 (275)
T ss_dssp             CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CS---CEEEEEESCSSCCSCCCCCSTT
T ss_pred             CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CC---CeeEEEECCCCCCCcchhhhHH
Confidence            468999999999999999998652  44 468999999999987653      35   8999999975321       25


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+++.+.+.|+|||++++..
T Consensus       170 ~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          170 GFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             HHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhcCCCcEEEEEc
Confidence            78899999999999999864

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.02  E-value=3.5e-10  Score=88.47  Aligned_cols=86  Identities=19%  Similarity=0.164  Sum_probs=72.2

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN   81 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~   81 (139)
                      +|+++ +..+.+|+++|+|+.+++.|++|++.+|+.++++++++|+.+++          .   +||+|++|++.. ...
T Consensus       208 ~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~---~fD~Vi~dpP~~-~~~  272 (336)
T 2yx1_A          208 PFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------V---KGNRVIMNLPKF-AHK  272 (336)
T ss_dssp             HHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------C---CEEEEEECCTTT-GGG
T ss_pred             HHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------C---CCcEEEECCcHh-HHH
Confidence            36677 66677999999999999999999999999778999999998763          3   799999998643 346


Q ss_pred             HHHHHhhcccCCeEEEEeCCC
Q 044253           82 YRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      +++.+.++|++||++++....
T Consensus       273 ~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          273 FIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             GHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEEEee
Confidence            788889999999998875443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.01  E-value=4.1e-10  Score=78.97  Aligned_cols=81  Identities=20%  Similarity=0.177  Sum_probs=66.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|+|+++++.|++++...++.+++ ++++|+.+.++..      .+   +||+|++...... ..+++.+.+.|
T Consensus        49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~------~~---~~D~i~~~~~~~~-~~~l~~~~~~L  117 (178)
T 3hm2_A           49 QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV------PD---NPDVIFIGGGLTA-PGVFAAAWKRL  117 (178)
T ss_dssp             SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC------CS---CCSEEEECC-TTC-TTHHHHHHHTC
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc------CC---CCCEEEECCcccH-HHHHHHHHHhc
Confidence            678999999999999999999999987688 8889987654321      25   8999999876543 66889999999


Q ss_pred             cCCeEEEEeCCC
Q 044253           91 KVGGIVIYDNTL  102 (139)
Q Consensus        91 ~~gG~ii~~~~~  102 (139)
                      +|||++++....
T Consensus       118 ~~gG~l~~~~~~  129 (178)
T 3hm2_A          118 PVGGRLVANAVT  129 (178)
T ss_dssp             CTTCEEEEEECS
T ss_pred             CCCCEEEEEeec
Confidence            999999986543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.00  E-value=1.1e-09  Score=87.17  Aligned_cols=86  Identities=14%  Similarity=0.058  Sum_probs=70.9

Q ss_pred             chhhhhh--hcceeEEeCCccHHHHHHHHHHHc---------------CCCCcEEEEeCChHHHHHhhHHhhhcccCCCc
Q 044253            4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKV---------------EVDLKINLMESRALPALDQLLKDEKIHFFFEN   66 (139)
Q Consensus         4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~---------------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~   66 (139)
                      ++..+..  ..+|+++|+|+++++.|++|++.+               |+. +++++++|+.+.+...      ..   +
T Consensus        62 ~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~~~~------~~---~  131 (378)
T 2dul_A           62 GIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLMAER------HR---Y  131 (378)
T ss_dssp             HHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHHHHS------TT---C
T ss_pred             HHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHHHhc------cC---C
Confidence            4555554  357999999999999999999999               875 4999999999987643      25   7


Q ss_pred             eeEEEEcCCCcchHHHHHHHhhcccCCeEEEEeC
Q 044253           67 FDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        67 fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ||+|++||.. ....+++.+.+.|++||++++..
T Consensus       132 fD~I~lDP~~-~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          132 FHFIDLDPFG-SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             EEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEeCCCC-CHHHHHHHHHHhcCCCCEEEEEe
Confidence            9999999853 34678899999999999988754

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.00  E-value=8e-10  Score=86.31  Aligned_cols=82  Identities=9%  Similarity=0.023  Sum_probs=66.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNY   82 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~   82 (139)
                      ...+|++||+|+++++.||+++...+ .++++++++|+.+++....     .+   +||+|++|....       ....+
T Consensus       112 p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~-----~~---~fDvIi~D~~~~~~~~~~L~t~ef  182 (317)
T 3gjy_A          112 PQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFT-----PA---SRDVIIRDVFAGAITPQNFTTVEF  182 (317)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCC-----TT---CEEEEEECCSTTSCCCGGGSBHHH
T ss_pred             CCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhcc-----CC---CCCEEEECCCCccccchhhhHHHH
Confidence            35689999999999999999986443 4689999999999986542     35   899999986321       12678


Q ss_pred             HHHHhhcccCCeEEEEeC
Q 044253           83 RETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~  100 (139)
                      ++.+.++|+|||++++..
T Consensus       183 l~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          183 FEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             HHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhcCCCcEEEEEe
Confidence            999999999999999764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.99  E-value=1.6e-09  Score=81.44  Aligned_cols=80  Identities=16%  Similarity=0.110  Sum_probs=66.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      ...+|+++|+|+++++.|++|++.+|+. +++++++|+.+.......    .+   +||+|++... ..+..+++.+.++
T Consensus       103 ~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~----~~---~fD~I~s~a~-~~~~~ll~~~~~~  173 (249)
T 3g89_A          103 PELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGH----RE---AYARAVARAV-APLCVLSELLLPF  173 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTT----TT---CEEEEEEESS-CCHHHHHHHHGGG
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhccccc----CC---CceEEEECCc-CCHHHHHHHHHHH
Confidence            3679999999999999999999999995 599999999886321000    25   8999999864 3567889999999


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      |+|||++++
T Consensus       174 LkpgG~l~~  182 (249)
T 3g89_A          174 LEVGGAAVA  182 (249)
T ss_dssp             EEEEEEEEE
T ss_pred             cCCCeEEEE
Confidence            999999886

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.99  E-value=3.5e-09  Score=80.40  Aligned_cols=85  Identities=21%  Similarity=0.270  Sum_probs=68.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------------   77 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------------   77 (139)
                      .+|+++|+|+.+++.+++|++..|+. +++++++|+......+...   ..   +||+|++|++..              
T Consensus       109 ~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~---~~---~fD~Vl~d~Pcs~~g~~~~~p~~~~~  181 (274)
T 3ajd_A          109 GTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKN---EI---FFDKILLDAPCSGNIIKDKNRNVSEE  181 (274)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHT---TC---CEEEEEEEECCC------------HH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhc---cc---cCCEEEEcCCCCCCcccccCCCCCHH
Confidence            78999999999999999999999985 7999999998875432111   25   899999997542              


Q ss_pred             -------chHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           78 -------NYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        78 -------~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                             ....+++.+.++|+|||++++.....
T Consensus       182 ~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          182 DIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence                   23567888889999999999865433

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.98  E-value=8.4e-10  Score=84.98  Aligned_cols=80  Identities=11%  Similarity=0.183  Sum_probs=64.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH--cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------ch
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK--VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------NY   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~--~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~~   79 (139)
                      ..+|++||+|+++++.|++++..  .++ .++++++++|+.++++..      .+   +||+|++|+...        ..
T Consensus       114 ~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~~l~~  184 (296)
T 1inl_A          114 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KN---EFDVIIIDSTDPTAGQGGHLFT  184 (296)
T ss_dssp             CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SS---CEEEEEEEC----------CCS
T ss_pred             CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CC---CceEEEEcCCCcccCchhhhhH
Confidence            46899999999999999999865  334 468999999999876542      35   899999997533        23


Q ss_pred             HHHHHHHhhcccCCeEEEEe
Q 044253           80 RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ..+++.+.++|+|||++++.
T Consensus       185 ~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          185 EEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEE
Confidence            67889999999999999986

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.98  E-value=5.6e-10  Score=79.91  Aligned_cols=80  Identities=9%  Similarity=0.087  Sum_probs=65.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------------cch
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------------DNY   79 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------------~~~   79 (139)
                      .+|+++|+|+++++.|+++++..|+.++++++++|+.+.....      .+   +||+|+++++.            ..+
T Consensus        48 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~---~fD~v~~~~~~~~~~~~~~~~~~~~~  118 (197)
T 3eey_A           48 GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DC---PVKAVMFNLGYLPSGDHSISTRPETT  118 (197)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CS---CEEEEEEEESBCTTSCTTCBCCHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cC---CceEEEEcCCcccCcccccccCcccH
Confidence            5899999999999999999999998778999999997763222      35   89999998743            023


Q ss_pred             HHHHHHHhhcccCCeEEEEeC
Q 044253           80 RNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ..+++.+.++|+|||++++..
T Consensus       119 ~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A          119 IQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCcCCCEEEEEE
Confidence            468889999999999998753

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.97  E-value=1.9e-09  Score=83.63  Aligned_cols=80  Identities=15%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH--cC-C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK--VE-V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~--~g-~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------   78 (139)
                      ..+|++||+|+++++.|++++..  .+ + .++++++++|+.++++..      .+   +||+|++|.....        
T Consensus       101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~~~~  171 (314)
T 1uir_A          101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------EE---RYDVVIIDLTDPVGEDNPARL  171 (314)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------CC---CEEEEEEECCCCBSTTCGGGG
T ss_pred             CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------CC---CccEEEECCCCcccccCcchh
Confidence            46899999999999999999875  23 3 468999999999987643      46   8999999975433        


Q ss_pred             --hHHHHHHHhhcccCCeEEEEe
Q 044253           79 --YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 --~~~~~~~~~~lL~~gG~ii~~   99 (139)
                        ...+++.+.+.|+|||++++.
T Consensus       172 l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          172 LYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             GSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccHHHHHHHHHHhcCCCcEEEEE
Confidence              467899999999999999985

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.97  E-value=4.8e-10  Score=84.59  Aligned_cols=85  Identities=11%  Similarity=0.132  Sum_probs=66.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH---cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK---VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----------   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~---~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----------   77 (139)
                      ..+|++||+++++++.|++|+..   +++.++++++++|+.+.+.......-...   +||+|+++++..          
T Consensus        60 ~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~---~fD~Vv~nPPy~~~~~~~~~~~  136 (260)
T 2ozv_A           60 KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE---HFHHVIMNPPYNDAGDRRTPDA  136 (260)
T ss_dssp             TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT---CEEEEEECCCC-----------
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC---CcCEEEECCCCcCCCCCCCcCH
Confidence            47899999999999999999998   88877899999999876432100000025   899999997542          


Q ss_pred             -----------chHHHHHHHhhcccCCeEEEE
Q 044253           78 -----------NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 -----------~~~~~~~~~~~lL~~gG~ii~   98 (139)
                                 .+..+++.+.++|+|||++++
T Consensus       137 ~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          137 LKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             ----------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence                       245678888899999999986

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.97  E-value=7.4e-10  Score=82.35  Aligned_cols=86  Identities=16%  Similarity=0.077  Sum_probs=68.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------chHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------NYRNY   82 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~~~~~   82 (139)
                      ..++++||+|+++++.|+++....+  .+++++.+|+...+..+.     ..   +||.|+.|+...        +...+
T Consensus        83 ~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~-----~~---~FD~i~~D~~~~~~~~~~~~~~~~~  152 (236)
T 3orh_A           83 IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DG---HFDGILYDTYPLSEETWHTHQFNFI  152 (236)
T ss_dssp             EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC-----TT---CEEEEEECCCCCBGGGTTTHHHHHH
T ss_pred             CcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccccc-----cc---CCceEEEeeeecccchhhhcchhhh
Confidence            3579999999999999999988776  468999999998865543     45   899999997321        24567


Q ss_pred             HHHHhhcccCCeEEEEeCCCCCcc
Q 044253           83 RETLMTLFKVGGIVIYDNTLWGGT  106 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~~~~~~  106 (139)
                      ++.+.++|||||++++.+....+.
T Consensus       153 ~~e~~rvLkPGG~l~f~~~~~~~~  176 (236)
T 3orh_A          153 KNHAFRLLKPGGVLTYCNLTSWGE  176 (236)
T ss_dssp             HHTHHHHEEEEEEEEECCHHHHHH
T ss_pred             hhhhhheeCCCCEEEEEecCCchh
Confidence            888999999999999877554443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.97  E-value=1.5e-09  Score=83.05  Aligned_cols=86  Identities=14%  Similarity=0.144  Sum_probs=68.8

Q ss_pred             hhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCce---eEEEEcCCCcch-
Q 044253            5 LESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENF---DYAFVDAHKDNY-   79 (139)
Q Consensus         5 ~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~f---D~If~D~~~~~~-   79 (139)
                      +..+.. ..+|+++|+|+++++.|++|++.+|+.++++++++|+.+.+         .+   +|   |+|++++++... 
T Consensus       139 ~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---------~~---~f~~~D~IvsnPPyi~~~  206 (284)
T 1nv8_A          139 VSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---------KE---KFASIEMILSNPPYVKSS  206 (284)
T ss_dssp             HHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---------GG---GTTTCCEEEECCCCBCGG
T ss_pred             HHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---------cc---ccCCCCEEEEcCCCCCcc
Confidence            333444 67999999999999999999999999878999999998743         23   67   999999764311 


Q ss_pred             ---------------------HHHHHHHh-hcccCCeEEEEeCCC
Q 044253           80 ---------------------RNYRETLM-TLFKVGGIVIYDNTL  102 (139)
Q Consensus        80 ---------------------~~~~~~~~-~lL~~gG~ii~~~~~  102 (139)
                                           ..+++.+. +.|+|||+++++...
T Consensus       207 ~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          207 AHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             GSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             cccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence                                 15788888 999999999986443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.95  E-value=1.9e-09  Score=81.08  Aligned_cols=85  Identities=12%  Similarity=0.052  Sum_probs=70.5

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR   83 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~   83 (139)
                      ++..+..+.+|+++|+|+.+++.|++|+..+++.  ++++++|+.+.++        ..   +||+|+++........++
T Consensus       135 ~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--------~~---~fD~Vv~n~~~~~~~~~l  201 (254)
T 2nxc_A          135 AIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--------FG---PFDLLVANLYAELHAALA  201 (254)
T ss_dssp             HHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--------GC---CEEEEEEECCHHHHHHHH
T ss_pred             HHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--------CC---CCCEEEECCcHHHHHHHH
Confidence            3445555669999999999999999999999885  9999999987532        35   899999987665567788


Q ss_pred             HHHhhcccCCeEEEEeCC
Q 044253           84 ETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~~  101 (139)
                      ..+.++|+|||++++...
T Consensus       202 ~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          202 PRYREALVPGGRALLTGI  219 (254)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCCEEEEEee
Confidence            889999999999998644

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.94  E-value=2.2e-09  Score=84.14  Aligned_cols=85  Identities=14%  Similarity=0.101  Sum_probs=69.2

Q ss_pred             chhhhhhh---cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--
Q 044253            4 NLESTFFI---YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--   78 (139)
Q Consensus         4 ~~~~~~~~---~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--   78 (139)
                      .++.+...   .+++++|+|+++++.|++|++.+|+. +++++++|+.+....       ..   +||+|++|++...  
T Consensus       218 ~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~-------~~---~~D~Ii~npPyg~r~  286 (354)
T 3tma_A          218 ALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRF-------FP---EVDRILANPPHGLRL  286 (354)
T ss_dssp             HHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGT-------CC---CCSEEEECCCSCC--
T ss_pred             HHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccc-------cC---CCCEEEECCCCcCcc
Confidence            34556555   79999999999999999999999997 899999999886321       35   7999999987531  


Q ss_pred             ---------hHHHHHHHhhcccCCeEEEEe
Q 044253           79 ---------YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ---------~~~~~~~~~~lL~~gG~ii~~   99 (139)
                               |..+++.+.++|+|||.+++-
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          287 GRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             --CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             CCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                     356777888999999998874

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.93  E-value=1.3e-09  Score=86.11  Aligned_cols=90  Identities=11%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh------h---cccCCCceeEEEEc
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE------K---IHFFFENFDYAFVD   73 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~------~---~~~~~~~fD~If~D   73 (139)
                      |+++.|....+|+++|+|+++++.|++|++.+|+ ++++++++|+.+.++.+....      +   ...   +||+|++|
T Consensus       227 ~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~---~fD~Vv~d  302 (369)
T 3bt7_A          227 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY---QCETIFVD  302 (369)
T ss_dssp             HHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGC---CEEEEEEC
T ss_pred             HHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhccccccccccccccC---CCCEEEEC
Confidence            5677777778999999999999999999999998 589999999999876542100      0   003   69999999


Q ss_pred             CCCcchHHHHHHHhhcccCCeEEEEe
Q 044253           74 AHKDNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        74 ~~~~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      |+....   .+.+.+.|+++|.+++-
T Consensus       303 PPr~g~---~~~~~~~l~~~g~ivyv  325 (369)
T 3bt7_A          303 PPRSGL---DSETEKMVQAYPRILYI  325 (369)
T ss_dssp             CCTTCC---CHHHHHHHTTSSEEEEE
T ss_pred             cCcccc---HHHHHHHHhCCCEEEEE
Confidence            986432   23345556678887753

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.92  E-value=5.2e-09  Score=85.30  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      .+|+++|+|+++++.+++|++.+|+. +++++++|+.......      .+   +||+|++|++...             
T Consensus       131 g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~------~~---~FD~Il~DaPCSg~G~~rr~p~~~~~  200 (456)
T 3m4x_A          131 GLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHF------SG---FFDRIVVDAPCSGEGMFRKDPNAIKE  200 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHH------TT---CEEEEEEECCCCCGGGTTTCHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhc------cc---cCCEEEECCCCCCccccccCHHHhhh
Confidence            58999999999999999999999995 6999999999875433      36   8999999987421             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                  ...+++.+.++|+|||++++....+
T Consensus       201 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          201 WTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence                        1256778889999999999754433

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.92  E-value=3e-09  Score=81.17  Aligned_cols=81  Identities=7%  Similarity=0.034  Sum_probs=68.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------------cc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------------DN   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------------~~   78 (139)
                      +.+|+++|+|+++++.|++++...|+.++++++++|+.+.          .+   +||+|++....            ..
T Consensus        95 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~---~fD~v~~~~~~~~~~d~~~~~~~~~  161 (302)
T 3hem_A           95 DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------DE---PVDRIVSLGAFEHFADGAGDAGFER  161 (302)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------CC---CCSEEEEESCGGGTTCCSSCCCTTH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----------CC---CccEEEEcchHHhcCccccccchhH
Confidence            5789999999999999999999999988999999999764          25   89999986432            33


Q ss_pred             hHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253           79 YRNYRETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                      +..+++.+.++|+|||++++......
T Consensus       162 ~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          162 YDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             HHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            47889999999999999998766543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.91  E-value=1.6e-09  Score=76.42  Aligned_cols=83  Identities=13%  Similarity=0.063  Sum_probs=67.4

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----chHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----NYRNY   82 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----~~~~~   82 (139)
                      +..+.+++++|+|+++++.|++++...++.+ +++++++|+.+.+.        ..   +||+|+++++..    ....+
T Consensus        71 ~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~---~~D~v~~~~~~~~~~~~~~~~  139 (194)
T 1dus_A           71 ADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--------DR---KYNKIITNPPIRAGKEVLHRI  139 (194)
T ss_dssp             GGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TS---CEEEEEECCCSTTCHHHHHHH
T ss_pred             HHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--------cC---CceEEEECCCcccchhHHHHH
Confidence            3346789999999999999999999998854 59999999877432        35   899999998643    34567


Q ss_pred             HHHHhhcccCCeEEEEeCC
Q 044253           83 RETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~  101 (139)
                      ++.+.++|+|||.+++...
T Consensus       140 l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          140 IEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             HHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCCEEEEEEC
Confidence            8888899999999997543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.91  E-value=1.7e-09  Score=84.29  Aligned_cols=81  Identities=17%  Similarity=0.258  Sum_probs=65.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH--cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------ch-H
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK--VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------NY-R   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~--~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------~~-~   80 (139)
                      ..+|++||+|+++++.|++++..  .++ .++++++++|+.+.++..      .+   +||+|++|+...      .+ .
T Consensus       140 ~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~---~fDvIi~d~~~p~~~~~~l~~~  210 (321)
T 2pt6_A          140 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TN---TYDVIIVDSSDPIGPAETLFNQ  210 (321)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CS---CEEEEEEECCCSSSGGGGGSSH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------CC---CceEEEECCcCCCCcchhhhHH
Confidence            46899999999999999999876  334 468999999999887543      35   899999997311      12 6


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+++.+.+.|+|||++++..
T Consensus       211 ~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          211 NFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEEc
Confidence            78899999999999999863

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.91  E-value=9.2e-10  Score=81.85  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=65.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+|+++++.|+++++..|+.++++++++|+.+.++        ..   +||+|++|.+  ....+++.+.+.|
T Consensus       118 ~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~---~~D~v~~~~~--~~~~~l~~~~~~L  184 (255)
T 3mb5_A          118 EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--------EE---NVDHVILDLP--QPERVVEHAAKAL  184 (255)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--------CC---SEEEEEECSS--CGGGGHHHHHHHE
T ss_pred             CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--------CC---CcCEEEECCC--CHHHHHHHHHHHc
Confidence            678999999999999999999999998789999999986421        35   7999999875  3456788899999


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +|||.+++.
T Consensus       185 ~~gG~l~~~  193 (255)
T 3mb5_A          185 KPGGFFVAY  193 (255)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCCEEEEE
Confidence            999999974

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.91  E-value=3.5e-09  Score=80.81  Aligned_cols=78  Identities=12%  Similarity=0.217  Sum_probs=64.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc--CC--------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV--EV--------DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~--------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---   77 (139)
                      ..+|++||+|+++++.|++++ ..  ++        .++++++++|+.+++..       .+   +||+|++|+...   
T Consensus        98 ~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-------~~---~fD~Ii~d~~~~~~~  166 (281)
T 1mjf_A           98 VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------NR---GFDVIIADSTDPVGP  166 (281)
T ss_dssp             CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------CC---CEEEEEEECCCCC--
T ss_pred             CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-------cC---CeeEEEECCCCCCCc
Confidence            458999999999999999998 44  33        46899999999988754       25   899999998521   


Q ss_pred             ----chHHHHHHHhhcccCCeEEEEe
Q 044253           78 ----NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ----~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                          ....+++.+.+.|+|||++++.
T Consensus       167 ~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          167 AKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             ---TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhhHHHHHHHHHHhcCCCcEEEEE
Confidence                1367889999999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.90  E-value=2.1e-09  Score=81.25  Aligned_cols=87  Identities=14%  Similarity=0.104  Sum_probs=70.1

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNY   82 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~   82 (139)
                      ..+..+.+|+++|+|+++++.|++++...|+.++++++++|+.+... ..     .+   +||+|++....   .+...+
T Consensus        85 ~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~---~fD~v~~~~~l~~~~~~~~~  155 (285)
T 4htf_A           85 KMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-HL-----ET---PVDLILFHAVLEWVADPRSV  155 (285)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-GC-----SS---CEEEEEEESCGGGCSCHHHH
T ss_pred             HHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-hc-----CC---CceEEEECchhhcccCHHHH
Confidence            34445789999999999999999999999987799999999987632 21     45   89999997632   345778


Q ss_pred             HHHHhhcccCCeEEEEeCC
Q 044253           83 RETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~  101 (139)
                      ++.+.++|+|||++++...
T Consensus       156 l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          156 LQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             HHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEEEe
Confidence            9999999999999998643

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.89  E-value=2.5e-09  Score=80.90  Aligned_cols=78  Identities=14%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------------   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------------   77 (139)
                      ..+|+++|+|+++++.|++|++..|+. +++++++|+.+.++        .+   +||+|+++++..             
T Consensus       133 ~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~--------~~---~fD~Iv~npPy~~~~~~~l~~~v~~  200 (276)
T 2b3t_A          133 DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA--------GQ---QFAMIVSNPPYIDEQDPHLQQGDVR  200 (276)
T ss_dssp             TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT--------TC---CEEEEEECCCCBCTTCHHHHSSGGG
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc--------cC---CccEEEECCCCCCccccccChhhhh
Confidence            678999999999999999999999985 79999999976432        35   899999987531             


Q ss_pred             ---------------chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 ---------------NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 ---------------~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                                     .+..+++.+.++|+|||++++..
T Consensus       201 ~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          201 FEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             SSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             cCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                           24567788889999999999863

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.89  E-value=2e-10  Score=84.78  Aligned_cols=85  Identities=13%  Similarity=0.105  Sum_probs=64.2

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH--
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN--   81 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~--   81 (139)
                      ++..+..+.+|+++|+|+.+++.|++|++..|+.++++++++|+.+...        ..   +||+|+++++......  
T Consensus        93 ~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~---~~D~v~~~~~~~~~~~~~  161 (241)
T 3gdh_A           93 TIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--------FL---KADVVFLSPPWGGPDYAT  161 (241)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--------GC---CCSEEEECCCCSSGGGGG
T ss_pred             HHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--------cC---CCCEEEECCCcCCcchhh
Confidence            3455556789999999999999999999999987789999999988641        46   8999999986432211  


Q ss_pred             -HHHHHhhcccCCeEEEEe
Q 044253           82 -YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 -~~~~~~~lL~~gG~ii~~   99 (139)
                       .+..+.++|+|||+++++
T Consensus       162 ~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          162 AETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             SSSBCTTTSCSSCHHHHHH
T ss_pred             hHHHHHHhhcCCcceeHHH
Confidence             223345677777776554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.88  E-value=1.2e-09  Score=78.79  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|+|+++++.|++++...++.+ ++++++|+.+..         .+   +||+|+++.....+..+++.+.++|+
T Consensus        84 ~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~---------~~---~fD~i~~~~~~~~~~~~l~~~~~~L~  150 (205)
T 3grz_A           84 KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV---------DG---KFDLIVANILAEILLDLIPQLDSHLN  150 (205)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC---------CS---CEEEEEEESCHHHHHHHGGGSGGGEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC---------CC---CceEEEECCcHHHHHHHHHHHHHhcC
Confidence            489999999999999999999999865 999999987642         35   89999999876666777888889999


Q ss_pred             CCeEEEEeC
Q 044253           92 VGGIVIYDN  100 (139)
Q Consensus        92 ~gG~ii~~~  100 (139)
                      |||++++..
T Consensus       151 ~gG~l~~~~  159 (205)
T 3grz_A          151 EDGQVIFSG  159 (205)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999853

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.88  E-value=1.1e-09  Score=81.65  Aligned_cols=88  Identities=11%  Similarity=0.024  Sum_probs=69.0

Q ss_pred             chhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcchH
Q 044253            4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDNYR   80 (139)
Q Consensus         4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~~~   80 (139)
                      ++..+..  ..+|+++|+|+.+++.|++|++.+|+.++++++++|+++.++.       .+   +||+|++-+ +.....
T Consensus        30 ~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-------~~---~~D~IviaG~Gg~~i~   99 (225)
T 3kr9_A           30 PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-------TD---QVSVITIAGMGGRLIA   99 (225)
T ss_dssp             HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GG---CCCEEEEEEECHHHHH
T ss_pred             HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-------Cc---CCCEEEEcCCChHHHH
Confidence            3444443  4689999999999999999999999988999999999876532       24   699998754 223356


Q ss_pred             HHHHHHhhcccCCeEEEEeCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      .+++.....|+++|++++.-.
T Consensus       100 ~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A          100 RILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             HHHHHTGGGCTTCCEEEEEES
T ss_pred             HHHHHHHHHhCCCCEEEEECC
Confidence            788888889999999987433

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.88  E-value=2.6e-09  Score=77.76  Aligned_cols=80  Identities=15%  Similarity=0.233  Sum_probs=65.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------ch
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NY   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~   79 (139)
                      ..++++||+|+++++.|++++...|+ ++++++++|+.+....+.     .+   +||+|+++.+..           .+
T Consensus        65 ~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-----~~---~~D~i~~~~~~~~~~~~~~~~~~~~  135 (214)
T 1yzh_A           65 DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFE-----DG---EIDRLYLNFSDPWPKKRHEKRRLTY  135 (214)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSC-----TT---CCSEEEEESCCCCCSGGGGGGSTTS
T ss_pred             CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcC-----CC---CCCEEEEECCCCccccchhhhccCC
Confidence            57899999999999999999999998 689999999987321121     35   799999986432           23


Q ss_pred             HHHHHHHhhcccCCeEEEEe
Q 044253           80 RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ..+++.+.+.|+|||++++.
T Consensus       136 ~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          136 KTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             HHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEE
Confidence            57899999999999999874

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.88  E-value=8.7e-09  Score=84.15  Aligned_cols=80  Identities=13%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      .+|+++|+|+++++.+++|++.+|+.  ++++++|+.+.....      .+   +||+|++|++...             
T Consensus       127 g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~------~~---~FD~Il~D~PcSg~G~~rr~pd~~~~  195 (464)
T 3m6w_A          127 GLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAF------GT---YFHRVLLDAPCSGEGMFRKDREAARH  195 (464)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHH------CS---CEEEEEEECCCCCGGGTTTCTTSGGG
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhc------cc---cCCEEEECCCcCCccccccChHHhhh
Confidence            58999999999999999999999985  999999999875333      46   8999999986521             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeCCC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                                  ...+++.+.++|+|||++++....
T Consensus       196 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          196 WGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence                        155778888999999999975443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.87  E-value=7.5e-09  Score=76.27  Aligned_cols=81  Identities=11%  Similarity=0.173  Sum_probs=64.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CCC--cc------h
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD---AHK--DN------Y   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~~--~~------~   79 (139)
                      ..+|++||+|+++++.|+++++..|+. +++++++|+.+.++....    .+   +||.|++.   +..  ..      .
T Consensus        58 ~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~----~~---~~d~v~~~~~~p~~~~~~~~rr~~~  129 (218)
T 3dxy_A           58 EQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIP----DN---SLRMVQLFFPDPWHKARHNKRRIVQ  129 (218)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSC----TT---CEEEEEEESCCCCCSGGGGGGSSCS
T ss_pred             CCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcC----CC---ChheEEEeCCCCccchhhhhhhhhh
Confidence            567999999999999999999999985 699999999998764211    35   89999986   311  11      1


Q ss_pred             HHHHHHHhhcccCCeEEEEe
Q 044253           80 RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ..+++.+.+.|+|||++++.
T Consensus       130 ~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          130 VPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEE
Confidence            35889999999999999874

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.87  E-value=1.9e-09  Score=85.25  Aligned_cols=87  Identities=10%  Similarity=0.087  Sum_probs=66.6

Q ss_pred             chhhhhhh--cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch
Q 044253            4 NLESTFFI--YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY   79 (139)
Q Consensus         4 ~~~~~~~~--~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~   79 (139)
                      ++..+..+  .+|+++|+|+++++.|++|++.+|+. +++++++|+.+.++...     .+   +||+|++|++..  ..
T Consensus       186 ~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~-----~~---~fD~Vi~~~p~~~~~~  256 (373)
T 2qm3_A          186 SIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYA-----LH---KFDTFITDPPETLEAI  256 (373)
T ss_dssp             HHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTT-----SS---CBSEEEECCCSSHHHH
T ss_pred             HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhc-----cC---CccEEEECCCCchHHH
Confidence            34445443  58999999999999999999999986 89999999987433211     35   899999998642  23


Q ss_pred             HHHHHHHhhcccCCe-EEEEe
Q 044253           80 RNYRETLMTLFKVGG-IVIYD   99 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG-~ii~~   99 (139)
                      ..+++.+.+.|+||| ++++.
T Consensus       257 ~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          257 RAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             HHHHHHHHHTBCSTTCEEEEE
T ss_pred             HHHHHHHHHHcccCCeEEEEE
Confidence            567788889999999 43443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.86  E-value=7.7e-09  Score=75.61  Aligned_cols=80  Identities=13%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------ch
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NY   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~   79 (139)
                      ..++++||+|+++++.|+++++..|+ ++++++++|+.+....+.     ..   +||.|++..+..           .+
T Consensus        62 ~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~-----~~---~~d~v~~~~~~p~~~~~~~~~rl~~  132 (213)
T 2fca_A           62 DINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFE-----PG---EVKRVYLNFSDPWPKKRHEKRRLTY  132 (213)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCC-----TT---SCCEEEEESCCCCCSGGGGGGSTTS
T ss_pred             CCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcC-----cC---CcCEEEEECCCCCcCccccccccCc
Confidence            67899999999999999999999998 479999999987432232     35   899998853211           14


Q ss_pred             HHHHHHHhhcccCCeEEEEe
Q 044253           80 RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ..+++.+.+.|+|||.+++.
T Consensus       133 ~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          133 SHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             HHHHHHHHHHHTTSCEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEE
Confidence            67899999999999999874

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.86  E-value=2.5e-09  Score=77.18  Aligned_cols=80  Identities=14%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      ..+..+.+|+++|+|+++++.|++++...++. +++++++|+.+....       ..   +||+|+++.....+.   +.
T Consensus        94 ~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~---~~D~i~~~~~~~~~~---~~  159 (210)
T 3lbf_A           94 ILAHLVQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQA-------RA---PFDAIIVTAAPPEIP---TA  159 (210)
T ss_dssp             HHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GC---CEEEEEESSBCSSCC---TH
T ss_pred             HHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCcc-------CC---CccEEEEccchhhhh---HH
Confidence            33444679999999999999999999999985 799999999875322       35   899999987544333   35


Q ss_pred             HhhcccCCeEEEEe
Q 044253           86 LMTLFKVGGIVIYD   99 (139)
Q Consensus        86 ~~~lL~~gG~ii~~   99 (139)
                      +.++|+|||++++.
T Consensus       160 ~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          160 LMTQLDEGGILVLP  173 (210)
T ss_dssp             HHHTEEEEEEEEEE
T ss_pred             HHHhcccCcEEEEE
Confidence            77899999999885

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.85  E-value=3.2e-09  Score=78.67  Aligned_cols=82  Identities=12%  Similarity=0.107  Sum_probs=68.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|+++|+|+.+++.|++++...|+.++++++++|+.+. + ..     .+   +||+|++.....  +....++.+.++
T Consensus        70 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~l~~~~~~  139 (257)
T 3f4k_A           70 GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-FQ-----NE---ELDLIWSEGAIYNIGFERGMNEWSKY  139 (257)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-SC-----TT---CEEEEEEESCSCCCCHHHHHHHHHTT
T ss_pred             CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-CC-----CC---CEEEEEecChHhhcCHHHHHHHHHHH
Confidence            399999999999999999999999988899999999653 2 11     35   899999875322  467789999999


Q ss_pred             ccCCeEEEEeCCCC
Q 044253           90 FKVGGIVIYDNTLW  103 (139)
Q Consensus        90 L~~gG~ii~~~~~~  103 (139)
                      |+|||++++.+..|
T Consensus       140 L~pgG~l~~~~~~~  153 (257)
T 3f4k_A          140 LKKGGFIAVSEASW  153 (257)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEeec
Confidence            99999999876543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.85  E-value=3.4e-09  Score=80.25  Aligned_cols=79  Identities=14%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~   85 (139)
                      +++|++||+|++|++.||+++...+...+++++++|+.+. +        .+   +||+|++.....     ....+++.
T Consensus        96 ~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~--------~~---~~d~v~~~~~l~~~~~~~~~~~l~~  163 (261)
T 4gek_A           96 NCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IE---NASMVVLNFTLQFLEPSERQALLDK  163 (261)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C--------CC---SEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c--------cc---ccccceeeeeeeecCchhHhHHHHH
Confidence            4589999999999999999999998888999999998764 1        25   799999865322     22457889


Q ss_pred             HhhcccCCeEEEEeCC
Q 044253           86 LMTLFKVGGIVIYDNT  101 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~  101 (139)
                      +.+.|+|||++++.+.
T Consensus       164 i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          164 IYQGLNPGGALVLSEK  179 (261)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHHcCCCcEEEEEec
Confidence            9999999999988544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.84  E-value=9.3e-10  Score=82.03  Aligned_cols=77  Identities=16%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .++|++||+|+++++.|+      +..++++++++|+.+.  ++...     ..   +||+|++|+.+..+...+..+.+
T Consensus       109 ~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~-----~~---~fD~I~~d~~~~~~~~~l~~~~r  174 (236)
T 2bm8_A          109 DCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLR-----EM---AHPLIFIDNAHANTFNIMKWAVD  174 (236)
T ss_dssp             CCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGS-----SS---CSSEEEEESSCSSHHHHHHHHHH
T ss_pred             CCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhc-----cC---CCCEEEECCchHhHHHHHHHHHH
Confidence            578999999999999987      2236899999999874  33221     24   69999999887778888998886


Q ss_pred             -cccCCeEEEEeCC
Q 044253           89 -LFKVGGIVIYDNT  101 (139)
Q Consensus        89 -lL~~gG~ii~~~~  101 (139)
                       +|+|||++++++.
T Consensus       175 ~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          175 HLLEEGDYFIIEDM  188 (236)
T ss_dssp             HTCCTTCEEEECSC
T ss_pred             hhCCCCCEEEEEeC
Confidence             9999999999887

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.84  E-value=2e-09  Score=80.52  Aligned_cols=86  Identities=12%  Similarity=0.077  Sum_probs=67.5

Q ss_pred             hhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcchHH
Q 044253            5 LESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDNYRN   81 (139)
Q Consensus         5 ~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~~~~   81 (139)
                      +..+..  ..+|+++|+|+.+++.|++|++.+|+.++++++++|+++.+..       .+   +||+|++-+ .......
T Consensus        37 i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-------~~---~~D~IviaGmGg~lI~~  106 (230)
T 3lec_A           37 IFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-------AD---NIDTITICGMGGRLIAD  106 (230)
T ss_dssp             HHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GG---CCCEEEEEEECHHHHHH
T ss_pred             HHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-------cc---ccCEEEEeCCchHHHHH
Confidence            344443  4589999999999999999999999988999999999887532       34   699988754 3334567


Q ss_pred             HHHHHhhcccCCeEEEEeC
Q 044253           82 YRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~  100 (139)
                      +++.....|+++|++|+.-
T Consensus       107 IL~~~~~~l~~~~~lIlqp  125 (230)
T 3lec_A          107 ILNNDIDKLQHVKTLVLQP  125 (230)
T ss_dssp             HHHHTGGGGTTCCEEEEEE
T ss_pred             HHHHHHHHhCcCCEEEEEC
Confidence            7787788899999887643

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.82  E-value=4.6e-09  Score=75.52  Aligned_cols=84  Identities=14%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      +.+++++|+|+.+++.|++++...++.++++++++|+.+. + +.     .+   +||+|++....   .+...+++.+.
T Consensus        66 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~~D~v~~~~~l~~~~~~~~~l~~~~  135 (219)
T 3dlc_A           66 DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-P-IE-----DN---YADLIVSRGSVFFWEDVATAFREIY  135 (219)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-S-SC-----TT---CEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-C-CC-----cc---cccEEEECchHhhccCHHHHHHHHH
Confidence            6799999999999999999999999888999999999763 2 21     35   89999997642   34577899999


Q ss_pred             hcccCCeEEEEeCCCCC
Q 044253           88 TLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~~  104 (139)
                      ++|+|||.+++.+....
T Consensus       136 ~~L~pgG~l~~~~~~~~  152 (219)
T 3dlc_A          136 RILKSGGKTYIGGGFGN  152 (219)
T ss_dssp             HHEEEEEEEEEEECCSS
T ss_pred             HhCCCCCEEEEEeccCc
Confidence            99999999998764443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.81  E-value=5.4e-09  Score=83.29  Aligned_cols=85  Identities=12%  Similarity=0.090  Sum_probs=69.5

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----   77 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----   77 (139)
                      +++..+..+.+|+++|+|+.+++.|++|+..+++.  ++++++|+.+....       .+   +||+|+++++..     
T Consensus       247 ~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~~-------~~---~fD~Ii~npp~~~~~~~  314 (381)
T 3dmg_A          247 LTLPLARMGAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTE-------EA---RFDIIVTNPPFHVGGAV  314 (381)
T ss_dssp             THHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSCT-------TC---CEEEEEECCCCCTTCSS
T ss_pred             HHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhcccc-------CC---CeEEEEECCchhhcccc
Confidence            45566667789999999999999999999999874  89999999876321       25   899999997543     


Q ss_pred             ---chHHHHHHHhhcccCCeEEEEe
Q 044253           78 ---NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ---~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                         ....+++.+.+.|+|||.+++.
T Consensus       315 ~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          315 ILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             CCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCcCcEEEEE
Confidence               2356788889999999999874

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.80  E-value=9.9e-09  Score=78.44  Aligned_cols=81  Identities=17%  Similarity=0.289  Sum_probs=65.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c-h-H
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N-Y-R   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~-~-~   80 (139)
                      ..+|++||+|+++++.|++++...+  + .++++++++|+.+.++..      .+   +||+|++|+...     . + .
T Consensus       102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~l~~~  172 (283)
T 2i7c_A          102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TN---TYDVIIVDSSDPIGPAETLFNQ  172 (283)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CS---CEEEEEEECCCTTTGGGGGSSH
T ss_pred             CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------CC---CceEEEEcCCCCCCcchhhhHH
Confidence            4689999999999999999986542  2 468999999999987643      35   899999987321     1 1 5


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+++.+.+.|+|||++++..
T Consensus       173 ~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          173 NFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             HHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhcCCCcEEEEEC
Confidence            78899999999999999864

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.80  E-value=8.8e-09  Score=74.05  Aligned_cols=77  Identities=12%  Similarity=-0.010  Sum_probs=65.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+++++|+|+++++.|++++...++.+ ++++++|+.+..+        .+   +||+|++... ..+..+++.+.+.|
T Consensus        89 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~--------~~---~~D~i~~~~~-~~~~~~l~~~~~~L  155 (207)
T 1jsx_A           89 EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS--------EP---PFDGVISRAF-ASLNDMVSWCHHLP  155 (207)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC--------CS---CEEEEECSCS-SSHHHHHHHHTTSE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCc--------cC---CcCEEEEecc-CCHHHHHHHHHHhc
Confidence            6799999999999999999999999854 9999999986521        35   8999998764 46778899999999


Q ss_pred             cCCeEEEEeC
Q 044253           91 KVGGIVIYDN  100 (139)
Q Consensus        91 ~~gG~ii~~~  100 (139)
                      +|||++++..
T Consensus       156 ~~gG~l~~~~  165 (207)
T 1jsx_A          156 GEQGRFYALK  165 (207)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCcEEEEEe
Confidence            9999998863

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.80  E-value=6.6e-09  Score=76.62  Aligned_cols=81  Identities=15%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--------cchHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--------DNYRNYR   83 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--------~~~~~~~   83 (139)
                      .+|+++|+|+++++.|+++....+  .+++++++|+.+.+..+.     ++   +||+|++|...        .....++
T Consensus        84 ~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~-----~~---~fD~V~~d~~~~~~~~~~~~~~~~~l  153 (236)
T 1zx0_A           84 DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DG---HFDGILYDTYPLSEETWHTHQFNFIK  153 (236)
T ss_dssp             EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC-----TT---CEEEEEECCCCCBGGGTTTHHHHHHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccC-----CC---ceEEEEECCcccchhhhhhhhHHHHH
Confidence            489999999999999999988777  579999999998753332     35   89999994321        1123457


Q ss_pred             HHHhhcccCCeEEEEeCCC
Q 044253           84 ETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~~~  102 (139)
                      +.+.++|+|||++++-+..
T Consensus       154 ~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          154 NHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             HTHHHHEEEEEEEEECCHH
T ss_pred             HHHHHhcCCCeEEEEEecC
Confidence            8888999999999975543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.80  E-value=3.5e-09  Score=80.02  Aligned_cols=77  Identities=16%  Similarity=0.112  Sum_probs=65.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+|+++++.|++|++..++.++++++++|+.+.++        ..   +||+|++|++  ....+++.+.+.|
T Consensus       137 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~---~~D~V~~~~~--~~~~~l~~~~~~L  203 (277)
T 1o54_A          137 SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--------EK---DVDALFLDVP--DPWNYIDKCWEAL  203 (277)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--------CC---SEEEEEECCS--CGGGTHHHHHHHE
T ss_pred             CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--------CC---ccCEEEECCc--CHHHHHHHHHHHc
Confidence            578999999999999999999999987789999999987521        35   7999999875  3456788899999


Q ss_pred             cCCeEEEEeC
Q 044253           91 KVGGIVIYDN  100 (139)
Q Consensus        91 ~~gG~ii~~~  100 (139)
                      +|||++++..
T Consensus       204 ~pgG~l~~~~  213 (277)
T 1o54_A          204 KGGGRFATVC  213 (277)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999998754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.79  E-value=4.5e-09  Score=83.51  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=67.4

Q ss_pred             chhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCC--cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--
Q 044253            4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDL--KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--   77 (139)
Q Consensus         4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~--~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--   77 (139)
                      +++.+..  +.+|+++|+|+.+++.|++|+..+|+.+  +++++.+|+.+.++        .+   +||+|+++++..  
T Consensus       237 s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------~~---~fD~Ii~nppfh~~  305 (375)
T 4dcm_A          237 GLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PF---RFNAVLCNPPFHQQ  305 (375)
T ss_dssp             HHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------TT---CEEEEEECCCC---
T ss_pred             HHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------CC---CeeEEEECCCcccC
Confidence            4455555  6799999999999999999999998754  58889999987431        35   899999998642  


Q ss_pred             ------chHHHHHHHhhcccCCeEEEEe
Q 044253           78 ------NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ------~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                            ....+++.+.+.|+|||.+++-
T Consensus       306 ~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          306 HALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             ----CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence                  1235788899999999999873

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.79  E-value=3.5e-09  Score=79.92  Aligned_cols=86  Identities=10%  Similarity=0.051  Sum_probs=67.2

Q ss_pred             chhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcchH
Q 044253            4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDNYR   80 (139)
Q Consensus         4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~~~   80 (139)
                      ++..+..  ..+|+++|+|+.+++.|++|++.+|+.++++++++|+++.+..       .+   +||+|++-+ ......
T Consensus        36 ~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-------~~---~~D~IviagmGg~lI~  105 (244)
T 3gnl_A           36 PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-------KD---AIDTIVIAGMGGTLIR  105 (244)
T ss_dssp             HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GG---CCCEEEEEEECHHHHH
T ss_pred             HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-------cc---cccEEEEeCCchHHHH
Confidence            3444443  4589999999999999999999999988999999999886532       23   599988743 333456


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.....|+++|++|+.
T Consensus       106 ~IL~~~~~~L~~~~~lIlq  124 (244)
T 3gnl_A          106 TILEEGAAKLAGVTKLILQ  124 (244)
T ss_dssp             HHHHHTGGGGTTCCEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEE
Confidence            7788888888999988764

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.79  E-value=4.9e-09  Score=78.50  Aligned_cols=83  Identities=7%  Similarity=0.061  Sum_probs=68.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|+++|+|+.+++.|++++...|+.++++++++|+.+. + +.     .+   +||+|++.....  +...+++.+.+
T Consensus        69 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~-----~~---~fD~i~~~~~~~~~~~~~~l~~~~~  138 (267)
T 3kkz_A           69 TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-P-FR-----NE---ELDLIWSEGAIYNIGFERGLNEWRK  138 (267)
T ss_dssp             SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-CC-----TT---CEEEEEESSCGGGTCHHHHHHHHGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-C-CC-----CC---CEEEEEEcCCceecCHHHHHHHHHH
Confidence            4589999999999999999999999988899999999664 2 11     35   899999976422  45778999999


Q ss_pred             cccCCeEEEEeCCCC
Q 044253           89 LFKVGGIVIYDNTLW  103 (139)
Q Consensus        89 lL~~gG~ii~~~~~~  103 (139)
                      +|+|||++++.+..+
T Consensus       139 ~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          139 YLKKGGYLAVSECSW  153 (267)
T ss_dssp             GEEEEEEEEEEEEEE
T ss_pred             HcCCCCEEEEEEeee
Confidence            999999999876543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.79  E-value=5.2e-09  Score=77.47  Aligned_cols=82  Identities=17%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      +.+|+++|+|+++++.|++++...|+.++++++++|+.+..  .      .+   +||+|++....   .+....++.+.
T Consensus        59 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~---~fD~V~~~~~~~~~~~~~~~l~~~~  127 (256)
T 1nkv_A           59 GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--A------NE---KCDVAACVGATWIAGGFAGAEELLA  127 (256)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--C------SS---CEEEEEEESCGGGTSSSHHHHHHHT
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC--c------CC---CCCEEEECCChHhcCCHHHHHHHHH
Confidence            56899999999999999999999999779999999997642  1      25   89999985432   24577899999


Q ss_pred             hcccCCeEEEEeCCCC
Q 044253           88 TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~  103 (139)
                      +.|+|||++++.+..+
T Consensus       128 r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A          128 QSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             TSEEEEEEEEEEEEEE
T ss_pred             HHcCCCeEEEEecCcc
Confidence            9999999999865443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.79  E-value=1.3e-08  Score=78.05  Aligned_cols=80  Identities=6%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~~~~~   85 (139)
                      +.+|+++|+|+++++.|++++...|+.++++++++|+.+.          .+   +||+|++...     ..++..+++.
T Consensus       113 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~---~fD~v~~~~~l~~~~~~~~~~~l~~  179 (318)
T 2fk8_A          113 DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AE---PVDRIVSIEAFEHFGHENYDDFFKR  179 (318)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CC---CCSEEEEESCGGGTCGGGHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----------CC---CcCEEEEeChHHhcCHHHHHHHHHH
Confidence            6799999999999999999999999888899999998653          24   8999998742     2456788999


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.++|+|||.+++.....
T Consensus       180 ~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          180 CFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             HHHHSCTTCEEEEEEEEC
T ss_pred             HHHhcCCCcEEEEEEecc
Confidence            999999999999866544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.79  E-value=2.8e-08  Score=69.38  Aligned_cols=80  Identities=20%  Similarity=0.227  Sum_probs=66.5

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .+....+++++|+|+++++.|+++++..++ ++++++++|+.+.++        ..   +||+|+++.. .....+++.+
T Consensus        53 l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~~---~~D~i~~~~~-~~~~~~l~~~  119 (183)
T 2yxd_A           53 IAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLD--------KL---EFNKAFIGGT-KNIEKIIEIL  119 (183)
T ss_dssp             HHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGG--------GC---CCSEEEECSC-SCHHHHHHHH
T ss_pred             HHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCcccccc--------CC---CCcEEEECCc-ccHHHHHHHH
Confidence            333567899999999999999999999998 579999999987422        35   8999999987 6777888888


Q ss_pred             hhcccCCeEEEEeCC
Q 044253           87 MTLFKVGGIVIYDNT  101 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~  101 (139)
                      .++  |||.+++...
T Consensus       120 ~~~--~gG~l~~~~~  132 (183)
T 2yxd_A          120 DKK--KINHIVANTI  132 (183)
T ss_dssp             HHT--TCCEEEEEES
T ss_pred             hhC--CCCEEEEEec
Confidence            777  9999987653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.79  E-value=3e-09  Score=76.31  Aligned_cols=81  Identities=10%  Similarity=0.061  Sum_probs=44.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+++++|+|+++++.|++++...+.  +++++++|+.+.+......   .+   +||+|+++++...            
T Consensus        54 ~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~---~fD~i~~npp~~~~~~~~~~~~~~~  125 (215)
T 4dzr_A           54 GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAER---GR---PWHAIVSNPPYIPTGEIDQLEPSVR  125 (215)
T ss_dssp             TEEEEEEECC---------------------CCHHHHHHHHHHHHHT---TC---CBSEEEECCCCCC------------
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhhc---cC---cccEEEECCCCCCCccccccChhhh
Confidence            56899999999999999999998887  7999999998865431110   25   8999999865311            


Q ss_pred             -----------------hHHHHHHHhhcccCCeE-EEEe
Q 044253           79 -----------------YRNYRETLMTLFKVGGI-VIYD   99 (139)
Q Consensus        79 -----------------~~~~~~~~~~lL~~gG~-ii~~   99 (139)
                                       +..+++.+.++|+|||+ +++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A          126 DYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             ------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             ccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                             14566667789999999 6654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.78  E-value=1.5e-08  Score=82.94  Aligned_cols=82  Identities=16%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      .+|+++|+|+++++.+++|++.+|+. +++++++|+..+....      .+   +||+|++|++...             
T Consensus       143 g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~------~~---~fD~Il~D~PcSg~G~~~~~pd~~~~  212 (479)
T 2frx_A          143 GAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAV------PE---MFDAILLDAPCSGEGVVRKDPDALKN  212 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHS------TT---CEEEEEEECCCCCGGGGGTCTTSSSS
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhc------cc---cCCEEEECCCcCCcccccCCHHHHhh
Confidence            68999999999999999999999985 6999999998764322      35   8999999976421             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                  ...+++.+.++|+|||++++....+
T Consensus       213 ~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                        1246777889999999999865433

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.78  E-value=1.5e-08  Score=78.57  Aligned_cols=81  Identities=23%  Similarity=0.279  Sum_probs=65.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+|+++|+|+.+++.+++|++..|+. +++++++|+..... .      .+   +||+|++|++...            
T Consensus       143 ~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~-~------~~---~fD~Il~d~Pcsg~g~~~~~p~~~~  211 (315)
T 1ixk_A          143 DGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE-L------NV---EFDKILLDAPCTGSGTIHKNPERKW  211 (315)
T ss_dssp             CSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG-G------CC---CEEEEEEECCTTSTTTCC-------
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc-c------cc---cCCEEEEeCCCCCcccccCChhHhh
Confidence            368999999999999999999999985 69999999987532 2      35   8999999976321            


Q ss_pred             -------------hHHHHHHHhhcccCCeEEEEeCCC
Q 044253           79 -------------YRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        79 -------------~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                                   ...+++.+.++|+|||++++....
T Consensus       212 ~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          212 NRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence                         136778888999999999986543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.78  E-value=5.5e-09  Score=77.00  Aligned_cols=82  Identities=17%  Similarity=0.074  Sum_probs=67.0

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .+....+|+++|+|+++++.|++++...++.++++++.+|+.+...  .     ..   +||+|+++++  .....++.+
T Consensus       109 l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~-----~~---~~D~v~~~~~--~~~~~l~~~  176 (248)
T 2yvl_A          109 LSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--P-----EG---IFHAAFVDVR--EPWHYLEKV  176 (248)
T ss_dssp             HHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--C-----TT---CBSEEEECSS--CGGGGHHHH
T ss_pred             HHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--C-----CC---cccEEEECCc--CHHHHHHHH
Confidence            3334679999999999999999999999987789999999976420  1     35   7999999875  345678889


Q ss_pred             hhcccCCeEEEEeC
Q 044253           87 MTLFKVGGIVIYDN  100 (139)
Q Consensus        87 ~~lL~~gG~ii~~~  100 (139)
                      .+.|+|||.+++..
T Consensus       177 ~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          177 HKSLMEGAPVGFLL  190 (248)
T ss_dssp             HHHBCTTCEEEEEE
T ss_pred             HHHcCCCCEEEEEe
Confidence            99999999998743

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.74  E-value=1.6e-08  Score=76.33  Aligned_cols=83  Identities=14%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cc
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DN   78 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~   78 (139)
                      ++..+..+.+|+++|+|+.+++.|++++...++  +++++++|+.+...        .+   +||+|++....     ..
T Consensus       135 ~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--------~~---~fD~i~~~~~~~~~~~~~  201 (286)
T 3m70_A          135 SLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--------QE---NYDFIVSTVVFMFLNRER  201 (286)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--------CS---CEEEEEECSSGGGSCGGG
T ss_pred             HHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--------cC---CccEEEEccchhhCCHHH
Confidence            344555678999999999999999999999887  79999999976421        25   89999997632     33


Q ss_pred             hHHHHHHHhhcccCCeEEEEe
Q 044253           79 YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ...+++.+.++|+|||++++-
T Consensus       202 ~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          202 VPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEE
Confidence            557889999999999997653

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.74  E-value=8.8e-09  Score=79.07  Aligned_cols=87  Identities=9%  Similarity=0.033  Sum_probs=69.5

Q ss_pred             hhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHH
Q 044253            6 ESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNY   82 (139)
Q Consensus         6 ~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~   82 (139)
                      ..+.. +.+|+++|+|+++++.|++++...|+.++++++++|+.+. + +.     .+   +||+|++...  ......+
T Consensus       134 ~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~-----~~---~fD~V~~~~~l~~~~~~~~  203 (312)
T 3vc1_A          134 MAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-P-FD-----KG---AVTASWNNESTMYVDLHDL  203 (312)
T ss_dssp             HHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-CC-----TT---CEEEEEEESCGGGSCHHHH
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-C-CC-----CC---CEeEEEECCchhhCCHHHH
Confidence            33444 6799999999999999999999999988999999999764 2 21     35   8999998642  1236778


Q ss_pred             HHHHhhcccCCeEEEEeCCC
Q 044253           83 RETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~~  102 (139)
                      ++.+.++|+|||++++....
T Consensus       204 l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          204 FSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             HHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCcEEEEEEcc
Confidence            99999999999999975533

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.74  E-value=2.1e-09  Score=80.11  Aligned_cols=83  Identities=8%  Similarity=0.061  Sum_probs=62.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc---CCCCc-------------------------EE-------------EEeCChHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV---EVDLK-------------------------IN-------------LMESRALP   49 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~---g~~~~-------------------------i~-------------~~~~da~~   49 (139)
                      ..+|+++|+|+++++.|++|+...   ++.++                         ++             ++++|+.+
T Consensus        77 ~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~  156 (250)
T 1o9g_A           77 LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFD  156 (250)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTC
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeeccccc
Confidence            578999999999999999999877   55333                         67             99999876


Q ss_pred             HHHhhH-HhhhcccCCCceeEEEEcCCCc------------chHHHHHHHhhcccCCeEEEEe
Q 044253           50 ALDQLL-KDEKIHFFFENFDYAFVDAHKD------------NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        50 ~l~~~~-~~~~~~~~~~~fD~If~D~~~~------------~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+.... ..   ..   +||+|+++++..            .+..+++.+.++|+|||++++.
T Consensus       157 ~~~~~~~~~---~~---~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  213 (250)
T 1o9g_A          157 PRALSAVLA---GS---APDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVT  213 (250)
T ss_dssp             GGGHHHHHT---TC---CCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccccccccC---CC---CceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEe
Confidence            432100 00   35   799999987532            2346788888999999999874

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.73  E-value=2.3e-08  Score=77.16  Aligned_cols=81  Identities=14%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH---cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-------H
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK---VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-------R   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~---~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-------~   80 (139)
                      ..+|++||+|+.+++.|++++..   ....++++++.+|+.+++....     .+   +||+|++|......       .
T Consensus       119 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-----~~---~fDvIi~d~~~~~~~~~~l~~~  190 (304)
T 3bwc_A          119 VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTP-----DN---TYDVVIIDTTDPAGPASKLFGE  190 (304)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSC-----TT---CEEEEEEECC---------CCH
T ss_pred             CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhcc-----CC---ceeEEEECCCCccccchhhhHH
Confidence            45899999999999999998843   2224689999999998865311     35   89999999743211       5


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.+.+.|+|||++++.
T Consensus       191 ~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          191 AFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             HHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEe
Confidence            7888999999999999985

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.73  E-value=4.7e-09  Score=77.10  Aligned_cols=84  Identities=13%  Similarity=0.079  Sum_probs=67.5

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRN   81 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~   81 (139)
                      .+..+.+|+++|+|+.+++.|++++...+...+++++++|+.+..  .      ..   +||+|++...     ......
T Consensus        84 l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~~  152 (235)
T 3lcc_A           84 MASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--P------TE---LFDLIFDYVFFCAIEPEMRPA  152 (235)
T ss_dssp             HCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--C------SS---CEEEEEEESSTTTSCGGGHHH
T ss_pred             HHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--C------CC---CeeEEEEChhhhcCCHHHHHH
Confidence            344577899999999999999999987766678999999998742  1      45   8999998642     225567


Q ss_pred             HHHHHhhcccCCeEEEEeCC
Q 044253           82 YRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~  101 (139)
                      +++.+.++|+|||.+++...
T Consensus       153 ~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          153 WAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             HHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHCCCCcEEEEEEe
Confidence            89999999999999987543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.72  E-value=3.2e-08  Score=74.63  Aligned_cols=81  Identities=9%  Similarity=0.066  Sum_probs=67.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~   84 (139)
                      .+.+|+++|+|+++++.|++++...|..++++++++|+.+.          .+   +||+|++....     .++..+++
T Consensus        86 ~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----------~~---~fD~v~~~~~l~~~~~~~~~~~l~  152 (287)
T 1kpg_A           86 YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------DE---PVDRIVSIGAFEHFGHERYDAFFS  152 (287)
T ss_dssp             HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------CC---CCSEEEEESCGGGTCTTTHHHHHH
T ss_pred             cCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----------CC---CeeEEEEeCchhhcChHHHHHHHH
Confidence            45699999999999999999999999878999999998642          24   89999986421     35678899


Q ss_pred             HHhhcccCCeEEEEeCCCC
Q 044253           85 TLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~  103 (139)
                      .+.++|+|||++++.....
T Consensus       153 ~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          153 LAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             HHHHHSCTTCEEEEEEEEE
T ss_pred             HHHHhcCCCCEEEEEEecC
Confidence            9999999999999876544

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.72  E-value=1.9e-08  Score=79.67  Aligned_cols=87  Identities=10%  Similarity=0.085  Sum_probs=68.6

Q ss_pred             hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc
Q 044253            5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD   77 (139)
Q Consensus         5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~   77 (139)
                      +..+..+. +|++||+| .+++.|+++++.+++.++++++++|+.+..  +      .+   +||+|+++..      ..
T Consensus        79 ~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~---~~D~Iv~~~~~~~l~~e~  146 (376)
T 3r0q_C           79 IWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS--L------PE---KVDVIISEWMGYFLLRES  146 (376)
T ss_dssp             HHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC--C------SS---CEEEEEECCCBTTBTTTC
T ss_pred             HHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC--c------CC---cceEEEEcChhhcccchH
Confidence            34444455 89999999 999999999999999889999999997652  2      25   8999999762      12


Q ss_pred             chHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           78 NYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      ....++..+.++|+|||++++.....
T Consensus       147 ~~~~~l~~~~~~LkpgG~li~~~~~~  172 (376)
T 3r0q_C          147 MFDSVISARDRWLKPTGVMYPSHARM  172 (376)
T ss_dssp             THHHHHHHHHHHEEEEEEEESSEEEE
T ss_pred             HHHHHHHHHHhhCCCCeEEEEecCeE
Confidence            34567888889999999998765443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.72  E-value=1.2e-08  Score=78.18  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=67.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---ch---HHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NY---RNYR   83 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~---~~~~   83 (139)
                      .+.+|+++|+|+.+++.|++++...|+.++++++++|+.+. + .      .+   +||+|++.....   +.   ..++
T Consensus       142 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~---~fD~v~~~~~~~~~~~~~~~~~~l  210 (305)
T 3ocj_A          142 PGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-D-T------RE---GYDLLTSNGLNIYEPDDARVTELY  210 (305)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-C-C------CS---CEEEEECCSSGGGCCCHHHHHHHH
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-C-c------cC---CeEEEEECChhhhcCCHHHHHHHH
Confidence            46689999999999999999999999988899999999874 1 1      25   899999976322   22   3468


Q ss_pred             HHHhhcccCCeEEEEeCCCC
Q 044253           84 ETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.+.|+|||++++.+...
T Consensus       211 ~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          211 RRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             HHHHHHEEEEEEEEEECCCC
T ss_pred             HHHHHhcCCCeEEEEEecCC
Confidence            89999999999999977554

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.71  E-value=1.5e-08  Score=81.84  Aligned_cols=82  Identities=17%  Similarity=0.109  Sum_probs=66.9

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH-H
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR-N   81 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~   81 (139)
                      |+++.+..+.+|+++|+|+++++.|++|++.+|+.  ++++++|+.+.+         ..   +||+|++|++..... .
T Consensus       304 ~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~---------~~---~fD~Vv~dPPr~g~~~~  369 (425)
T 2jjq_A          304 FGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS---------VK---GFDTVIVDPPRAGLHPR  369 (425)
T ss_dssp             HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC---------CT---TCSEEEECCCTTCSCHH
T ss_pred             HHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC---------cc---CCCEEEEcCCccchHHH
Confidence            56677777789999999999999999999999985  999999998752         24   799999999865443 3


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      +++.+ ..|+|+|++++.
T Consensus       370 ~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          370 LVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             HHHHH-HHHCCSEEEEEE
T ss_pred             HHHHH-HhcCCCcEEEEE
Confidence            55555 458999999875

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.71  E-value=2.1e-08  Score=80.91  Aligned_cols=89  Identities=11%  Similarity=0.102  Sum_probs=69.2

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      |+++.+....+|+++|+|+++++.|++|++.+|+. +++++++|+.+.+..+...   ..   +||+|++|++.......
T Consensus       300 ~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~~---~~---~fD~Vv~dPPr~g~~~~  372 (433)
T 1uwv_A          300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWA---KN---GFDKVLLDPARAGAAGV  372 (433)
T ss_dssp             THHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGG---TT---CCSEEEECCCTTCCHHH
T ss_pred             HHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhhh---cC---CCCEEEECCCCccHHHH
Confidence            56667767789999999999999999999999985 8999999998754331110   35   79999999987655666


Q ss_pred             HHHHhhcccCCeEEEEe
Q 044253           83 RETLMTLFKVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~   99 (139)
                      ++.+. .+++++++.+.
T Consensus       373 ~~~l~-~~~p~~ivyvs  388 (433)
T 1uwv_A          373 MQQII-KLEPIRIVYVS  388 (433)
T ss_dssp             HHHHH-HHCCSEEEEEE
T ss_pred             HHHHH-hcCCCeEEEEE
Confidence            65554 46888888763

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.69  E-value=1.4e-08  Score=75.19  Aligned_cols=77  Identities=8%  Similarity=-0.008  Sum_probs=63.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      ..+|+++|+|+++++.|+++++.. | .++++++++|+.+.  .+.     ..   +||+|++|.+  ....+++.+.+.
T Consensus       121 ~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~--~~~-----~~---~~D~v~~~~~--~~~~~l~~~~~~  187 (258)
T 2pwy_A          121 KGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEA--ELE-----EA---AYDGVALDLM--EPWKVLEKAALA  187 (258)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGC--CCC-----TT---CEEEEEEESS--CGGGGHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhc--CCC-----CC---CcCEEEECCc--CHHHHHHHHHHh
Confidence            578999999999999999999988 8 46899999999765  121     35   7999999875  345678889999


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+|||.+++..
T Consensus       188 L~~gG~l~~~~  198 (258)
T 2pwy_A          188 LKPDRFLVAYL  198 (258)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            99999998743

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.69  E-value=2e-08  Score=75.04  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +.+|+++|+|+++++.|++++...|+.++++++++|+.+. + ..     .+   +||+|++...   ..+...+++.+.
T Consensus        84 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~  153 (273)
T 3bus_A           84 DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-P-FE-----DA---SFDAVWALESLHHMPDRGRALREMA  153 (273)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SC-----TT---CEEEEEEESCTTTSSCHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-C-CC-----CC---CccEEEEechhhhCCCHHHHHHHHH
Confidence            6799999999999999999999999988999999999763 2 11     35   8999998653   234577899999


Q ss_pred             hcccCCeEEEEeCCCC
Q 044253           88 TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~  103 (139)
                      ++|+|||.+++.+...
T Consensus       154 ~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          154 RVLRPGGTVAIADFVL  169 (273)
T ss_dssp             TTEEEEEEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEeec
Confidence            9999999999876543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.68  E-value=1.8e-08  Score=76.94  Aligned_cols=90  Identities=11%  Similarity=0.224  Sum_probs=63.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCC-----------------------------------------------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVD-----------------------------------------------------   37 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-----------------------------------------------------   37 (139)
                      ..+|++||+|+.+++.|++++...+..                                                     
T Consensus        70 ~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~  149 (292)
T 3g07_A           70 PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADT  149 (292)
T ss_dssp             CSEEEEEESCHHHHHHHHHTC---------------------------------------------------CCSSTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccchhhhccCcccccccccccccc
Confidence            579999999999999999997765432                                                     


Q ss_pred             ----CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---c------chHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253           38 ----LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---D------NYRNYRETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        38 ----~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~------~~~~~~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                          ++++++++|+......+...  ...   +||+|++....   .      ....+++.+.++|+|||++++..-.|.
T Consensus       150 ~~~p~~v~f~~~d~~~~~~~~~~~--~~~---~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          150 SVFPNNVVFVTGNYVLDRDDLVEA--QTP---EYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             SSTTTTEEEEECCCCCSSHHHHTT--CCC---CEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHH
T ss_pred             ccccccceEEecccccCccccccc--cCC---CcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCch
Confidence                58999999987321111000  035   89999997642   1      345678889999999999999876665


Q ss_pred             c
Q 044253          105 G  105 (139)
Q Consensus       105 ~  105 (139)
                      .
T Consensus       225 ~  225 (292)
T 3g07_A          225 S  225 (292)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.68  E-value=2.3e-08  Score=73.05  Aligned_cols=76  Identities=18%  Similarity=0.132  Sum_probs=61.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCcchH-HHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKDNYR-NYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~~~~~~~~   88 (139)
                      .+|+++|+|+++++.++++++..   ++++++++|+.+..  ...      .+   +||+|++|....... .++..+.+
T Consensus        99 ~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~------~~---~~D~v~~~~~~~~~~~~~l~~~~~  166 (227)
T 1g8a_A           99 GKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRAL------VP---KVDVIFEDVAQPTQAKILIDNAEV  166 (227)
T ss_dssp             SEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTT------CC---CEEEEEECCCSTTHHHHHHHHHHH
T ss_pred             eEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcc------cC---CceEEEECCCCHhHHHHHHHHHHH
Confidence            68999999999999999998765   57999999997632  111      34   799999998754443 34888999


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .|+|||++++.
T Consensus       167 ~LkpgG~l~~~  177 (227)
T 1g8a_A          167 YLKRGGYGMIA  177 (227)
T ss_dssp             HEEEEEEEEEE
T ss_pred             hcCCCCEEEEE
Confidence            99999999886

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.67  E-value=2.3e-08  Score=77.20  Aligned_cols=74  Identities=22%  Similarity=0.337  Sum_probs=61.0

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV   92 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~   92 (139)
                      +|+++|+|+++++.|+++++..|+. +++++++|+.+.+..       ..   +||+|+++.......   +.+.+.|+|
T Consensus       102 ~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~-------~~---~fD~Iv~~~~~~~~~---~~~~~~Lkp  167 (317)
T 1dl5_A          102 LVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPE-------FS---PYDVIFVTVGVDEVP---ETWFTQLKE  167 (317)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GC---CEEEEEECSBBSCCC---HHHHHHEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhcccc-------CC---CeEEEEEcCCHHHHH---HHHHHhcCC
Confidence            4999999999999999999999985 499999999875321       35   899999998654433   467789999


Q ss_pred             CeEEEEeC
Q 044253           93 GGIVIYDN  100 (139)
Q Consensus        93 gG~ii~~~  100 (139)
                      ||++++..
T Consensus       168 gG~lvi~~  175 (317)
T 1dl5_A          168 GGRVIVPI  175 (317)
T ss_dssp             EEEEEEEB
T ss_pred             CcEEEEEE
Confidence            99999863

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.67  E-value=2.6e-08  Score=74.11  Aligned_cols=81  Identities=14%  Similarity=0.157  Sum_probs=62.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc--------CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV--------EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~--------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----   78 (139)
                      ..+|++||+|+.+++.|+++++.+        ++ ++++++++|+.+.++....    ..   ++|.|++..+-..    
T Consensus        73 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~----~~---~~d~v~~~~p~p~~k~~  144 (246)
T 2vdv_E           73 EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFE----KG---QLSKMFFCFPDPHFKQR  144 (246)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSC----TT---CEEEEEEESCCCC----
T ss_pred             CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcc----cc---ccCEEEEECCCcccccc
Confidence            357999999999999999999876        76 4799999999875543211    24   7999987532221    


Q ss_pred             -------hHHHHHHHhhcccCCeEEEEe
Q 044253           79 -------YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 -------~~~~~~~~~~lL~~gG~ii~~   99 (139)
                             +..++..+.++|+|||++++.
T Consensus       145 ~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          145 KHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             --CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence                   257889999999999999873

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.67  E-value=2.5e-08  Score=72.37  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=62.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCC----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDL----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNY   82 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~   82 (139)
                      .+|+++|+|+++++.|++++...++.+    +++++++|+... +..      .+   +||+|++.....     ....+
T Consensus        54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~------~~---~fD~v~~~~~l~~~~~~~~~~~  123 (217)
T 3jwh_A           54 EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-DKR------FH---GYDAATVIEVIEHLDLSRLGAF  123 (217)
T ss_dssp             SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-CGG------GC---SCSEEEEESCGGGCCHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-ccc------CC---CcCEEeeHHHHHcCCHHHHHHH
Confidence            589999999999999999998888764    899999998432 111      35   899999875322     33577


Q ss_pred             HHHHhhcccCCeEEEEeC
Q 044253           83 RETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~  100 (139)
                      ++.+.++|+|||++++..
T Consensus       124 l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          124 ERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             HHHHHTTTCCSEEEEEEE
T ss_pred             HHHHHHHcCCCEEEEEcc
Confidence            888999999999888753

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.67  E-value=1.2e-07  Score=76.32  Aligned_cols=108  Identities=17%  Similarity=0.161  Sum_probs=72.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETL   86 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~   86 (139)
                      .++|++||+|+++.         . ..++++++++|+.+.  +..+...   .+   +||+|++|+..  .++...++.+
T Consensus       247 ~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~~---d~---sFDlVisdgsH~~~d~~~aL~el  310 (419)
T 3sso_A          247 RGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIARR---YG---PFDIVIDDGSHINAHVRTSFAAL  310 (419)
T ss_dssp             TCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHHH---HC---CEEEEEECSCCCHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhcc---cC---CccEEEECCcccchhHHHHHHHH
Confidence            56899999999982         1 236899999999763  2222211   25   89999999754  2345678899


Q ss_pred             hhcccCCeEEEEeCCCCCccccc-ccccCchhhhhchHHHHHHHHHHhh
Q 044253           87 MTLFKVGGIVIYDNTLWGGTVAM-AEEQVPEILRSTRQPNWNLDKLFAS  134 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  134 (139)
                      .++|+|||+++++++........ .....+.+.....+.++++.+.+..
T Consensus       311 ~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~  359 (419)
T 3sso_A          311 FPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQH  359 (419)
T ss_dssp             GGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTG
T ss_pred             HHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcc
Confidence            99999999999998873211111 1100012235678888888887654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.67  E-value=2.1e-08  Score=76.00  Aligned_cols=83  Identities=7%  Similarity=0.068  Sum_probs=68.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +.+|+++|+|+.+++.|++++...|+.++++++++|+.+. + +.     .+   +||+|++...   ..+...+++.+.
T Consensus       105 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~  174 (297)
T 2o57_A          105 GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-CE-----DN---SYDFIWSQDAFLHSPDKLKVFQECA  174 (297)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-SC-----TT---CEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C-CC-----CC---CEeEEEecchhhhcCCHHHHHHHHH
Confidence            5689999999999999999999999988999999999764 2 11     35   8999998653   234577899999


Q ss_pred             hcccCCeEEEEeCCCC
Q 044253           88 TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~  103 (139)
                      ++|+|||++++.+...
T Consensus       175 ~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          175 RVLKPRGVMAITDPMK  190 (297)
T ss_dssp             HHEEEEEEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEecc
Confidence            9999999999875443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.66  E-value=1.4e-08  Score=76.76  Aligned_cols=76  Identities=8%  Similarity=0.151  Sum_probs=63.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      ..+|+++|+++++++.|+++++.. |. ++++++++|+.+.++        .+   +||+|++|.+  ....+++.+.+.
T Consensus       135 ~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~--------~~---~fD~Vi~~~~--~~~~~l~~~~~~  200 (275)
T 1yb2_A          135 KGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS--------DQ---MYDAVIADIP--DPWNHVQKIASM  200 (275)
T ss_dssp             SSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC--------SC---CEEEEEECCS--CGGGSHHHHHHT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc--------CC---CccEEEEcCc--CHHHHHHHHHHH
Confidence            578999999999999999999988 85 579999999976321        35   7999999875  345678899999


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+|||++++..
T Consensus       201 LkpgG~l~i~~  211 (275)
T 1yb2_A          201 MKPGSVATFYL  211 (275)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cCCCCEEEEEe
Confidence            99999998754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.66  E-value=2.6e-08  Score=72.00  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=66.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~~   88 (139)
                      .+|+++|+|+++++.|++++...++. +++++++|+.+. + +.     ..   +||+|++....   .+...+++.+.+
T Consensus        63 ~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~~  131 (219)
T 3dh0_A           63 GKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKI-P-LP-----DN---TVDFIFMAFTFHELSEPLKFLEELKR  131 (219)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBC-S-SC-----SS---CEEEEEEESCGGGCSSHHHHHHHHHH
T ss_pred             cEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccC-C-CC-----CC---CeeEEEeehhhhhcCCHHHHHHHHHH
Confidence            68999999999999999999999885 799999998764 1 11     35   89999997642   245778899999


Q ss_pred             cccCCeEEEEeCCCC
Q 044253           89 LFKVGGIVIYDNTLW  103 (139)
Q Consensus        89 lL~~gG~ii~~~~~~  103 (139)
                      +|+|||.+++.+...
T Consensus       132 ~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          132 VAKPFAYLAIIDWKK  146 (219)
T ss_dssp             HEEEEEEEEEEEECS
T ss_pred             HhCCCeEEEEEEecc
Confidence            999999999865433

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.66  E-value=2.4e-08  Score=72.91  Aligned_cols=79  Identities=16%  Similarity=0.209  Sum_probs=61.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      .+|+++|+++++++.|++++...++    .++++++++|+.+........   ..   +||+|+++.....   +++.+.
T Consensus       110 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---~~---~fD~I~~~~~~~~---~~~~~~  180 (227)
T 2pbf_A          110 SYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE---LG---LFDAIHVGASASE---LPEILV  180 (227)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH---HC---CEEEEEECSBBSS---CCHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc---CC---CcCEEEECCchHH---HHHHHH
Confidence            4899999999999999999998883    358999999998743110000   35   8999999986543   346778


Q ss_pred             hcccCCeEEEEe
Q 044253           88 TLFKVGGIVIYD   99 (139)
Q Consensus        88 ~lL~~gG~ii~~   99 (139)
                      ++|+|||++++.
T Consensus       181 ~~LkpgG~lv~~  192 (227)
T 2pbf_A          181 DLLAENGKLIIP  192 (227)
T ss_dssp             HHEEEEEEEEEE
T ss_pred             HhcCCCcEEEEE
Confidence            999999999875

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.65  E-value=3.6e-08  Score=79.87  Aligned_cols=83  Identities=20%  Similarity=0.186  Sum_probs=65.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY------------   79 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~------------   79 (139)
                      .+|+++|+|+.+++.+++|++..|+. +++++++|+......+.     ..   +||+|++|++....            
T Consensus       285 ~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~-----~~---~fD~Vl~D~Pcsg~g~~~~~pd~~~~  355 (450)
T 2yxl_A          285 GKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIG-----EE---VADKVLLDAPCTSSGTIGKNPELRWR  355 (450)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSC-----SS---CEEEEEEECCCCCGGGTTTSTTHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhc-----cC---CCCEEEEcCCCCCCeeeccChhhhhh
Confidence            68999999999999999999999984 69999999876522121     25   79999999764221            


Q ss_pred             -------------HHHHHHHhhcccCCeEEEEeCCCC
Q 044253           80 -------------RNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        80 -------------~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                   ..+++.+.++|+|||++++.....
T Consensus       356 ~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          356 LREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                         456888889999999999765543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.65  E-value=2.1e-08  Score=77.87  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcC----------CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVE----------VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN   81 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g----------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~   81 (139)
                      .+|+++|+++++++.|++|+...+          ..++++++++|+.+.+..+.     ..   +||+|++|...  ...
T Consensus       131 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~-----~~---~fD~V~~~~~~--~~~  200 (336)
T 2b25_A          131 GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK-----SL---TFDAVALDMLN--PHV  200 (336)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---------------EEEEEECSSS--TTT
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC-----CC---CeeEEEECCCC--HHH
Confidence            789999999999999999998643          23589999999987532222     35   79999998753  334


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      .++.+.+.|+|||.+++-
T Consensus       201 ~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          201 TLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             THHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEE
Confidence            688899999999999863

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.65  E-value=6.5e-08  Score=72.01  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=61.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH------cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK------VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~------~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------   78 (139)
                      ...|++||+|+.+++.|+++++.      .+. .+++++++|+.+.++....    ..   +||.|++..+-..      
T Consensus        70 ~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~----~~---~~D~v~~~~~dp~~k~~h~  141 (235)
T 3ckk_A           70 DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFY----KG---QLTKMFFLFPDPHFKRTKH  141 (235)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCC----TT---CEEEEEEESCC--------
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCC----Cc---CeeEEEEeCCCchhhhhhh
Confidence            56899999999999999998864      344 5799999999875543211    35   8999998643211      


Q ss_pred             -----hHHHHHHHhhcccCCeEEEEe
Q 044253           79 -----YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 -----~~~~~~~~~~lL~~gG~ii~~   99 (139)
                           ...+++.+.++|+|||.+++.
T Consensus       142 krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          142 KWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             ---CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence                 246889999999999999874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.65  E-value=4.6e-08  Score=69.39  Aligned_cols=82  Identities=12%  Similarity=0.005  Sum_probs=65.3

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYR   80 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~   80 (139)
                      ..+..+.+++++|+|+.+++.|++++...++. +++++++|+.+. + .      ..   +||+|++....     ....
T Consensus        49 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~-~------~~---~~D~v~~~~~l~~~~~~~~~  116 (199)
T 2xvm_A           49 YLAANGYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNL-T-F------DR---QYDFILSTVVLMFLEAKTIP  116 (199)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGC-C-C------CC---CEEEEEEESCGGGSCGGGHH
T ss_pred             HHHHCCCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhC-C-C------CC---CceEEEEcchhhhCCHHHHH
Confidence            34445679999999999999999999988873 699999998764 1 1      25   89999987532     2456


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.+.++|+|||.+++-
T Consensus       117 ~~l~~~~~~L~~gG~l~~~  135 (199)
T 2xvm_A          117 GLIANMQRCTKPGGYNLIV  135 (199)
T ss_dssp             HHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCeEEEEE
Confidence            7889999999999997653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.65  E-value=2.8e-08  Score=73.91  Aligned_cols=82  Identities=13%  Similarity=0.199  Sum_probs=65.3

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRE   84 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~   84 (139)
                      +....+|+++|+|+++++.|++++...|+. +++++++|+.+. + +.     ++   +||+|++....   .+....+.
T Consensus        56 ~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~~-----~~---~fD~V~~~~~l~~~~d~~~~l~  124 (260)
T 1vl5_A           56 APFVKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-FT-----DE---RFHIVTCRIAAHHFPNPASFVS  124 (260)
T ss_dssp             GGGSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-SC-----TT---CEEEEEEESCGGGCSCHHHHHH
T ss_pred             HHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-CC-----CC---CEEEEEEhhhhHhcCCHHHHHH
Confidence            334568999999999999999999988874 799999998763 2 21     35   89999987532   34567899


Q ss_pred             HHhhcccCCeEEEEeC
Q 044253           85 TLMTLFKVGGIVIYDN  100 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~  100 (139)
                      .+.+.|+|||++++.+
T Consensus       125 ~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          125 EAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             HHHHHEEEEEEEEEEE
T ss_pred             HHHHHcCCCCEEEEEE
Confidence            9999999999998854

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.64  E-value=5e-08  Score=76.53  Aligned_cols=83  Identities=12%  Similarity=0.122  Sum_probs=65.7

Q ss_pred             hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Ccc
Q 044253            6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KDN   78 (139)
Q Consensus         6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~~   78 (139)
                      ..+..+ .+|+++|+| ++++.|+++++.+|+.++++++++|+.+.  .+.     .+   +||+|+++..      ...
T Consensus        83 ~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-----~~---~fD~Iis~~~~~~l~~~~~  151 (349)
T 3q7e_A           83 FAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV--ELP-----VE---KVDIIISEWMGYCLFYESM  151 (349)
T ss_dssp             HHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC--CCS-----SS---CEEEEEECCCBBTBTBTCC
T ss_pred             HHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc--cCC-----CC---ceEEEEEccccccccCchh
Confidence            344444 489999999 59999999999999988899999999875  221     35   8999999752      234


Q ss_pred             hHHHHHHHhhcccCCeEEEEe
Q 044253           79 YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ...++..+.++|+|||+++.+
T Consensus       152 ~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          152 LNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             HHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHHHHHHHHhCCCCCEEccc
Confidence            566788888999999999854

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.64  E-value=1.3e-08  Score=73.84  Aligned_cols=84  Identities=12%  Similarity=-0.027  Sum_probs=59.9

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcC-----------CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVE-----------VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD   73 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g-----------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D   73 (139)
                      ...+..+.+|++||+|++|++.|+++.....           ...+++++++|+.+.-..-      .+   +||+|+..
T Consensus        38 ~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~------~~---~fD~v~~~  108 (203)
T 1pjz_A           38 SWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD------IG---HCAAFYDR  108 (203)
T ss_dssp             HHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH------HH---SEEEEEEE
T ss_pred             HHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc------CC---CEEEEEEC
Confidence            3455567899999999999999998764310           1257999999998752110      15   89999975


Q ss_pred             CCC-----cchHHHHHHHhhcccCCeEEE
Q 044253           74 AHK-----DNYRNYRETLMTLFKVGGIVI   97 (139)
Q Consensus        74 ~~~-----~~~~~~~~~~~~lL~~gG~ii   97 (139)
                      ...     .....++..+.++|+|||+++
T Consensus       109 ~~l~~l~~~~~~~~l~~~~r~LkpgG~~~  137 (203)
T 1pjz_A          109 AAMIALPADMRERYVQHLEALMPQACSGL  137 (203)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred             cchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            422     123457888999999999833

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.64  E-value=4.5e-08  Score=73.31  Aligned_cols=85  Identities=20%  Similarity=0.208  Sum_probs=68.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +.+|+++|+|+.+++.|++++...+.. +++++++|+.+. + ..     .+   +||+|++...   ..+...+++.+.
T Consensus        61 ~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~  129 (276)
T 3mgg_A           61 DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSL-P-FE-----DS---SFDHIFVCFVLEHLQSPEEALKSLK  129 (276)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGC-C-SC-----TT---CEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccC-C-CC-----CC---CeeEEEEechhhhcCCHHHHHHHHH
Confidence            578999999999999999999999884 799999999864 2 11     35   8999998753   234567889999


Q ss_pred             hcccCCeEEEEeCCCCCcc
Q 044253           88 TLFKVGGIVIYDNTLWGGT  106 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~~~~  106 (139)
                      ++|+|||++++.+......
T Consensus       130 ~~L~pgG~l~~~~~~~~~~  148 (276)
T 3mgg_A          130 KVLKPGGTITVIEGDHGSC  148 (276)
T ss_dssp             HHEEEEEEEEEEEECGGGC
T ss_pred             HHcCCCcEEEEEEcCCCCc
Confidence            9999999999876554333

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.63  E-value=4e-08  Score=74.00  Aligned_cols=80  Identities=11%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-------cchHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-------DNYRNYRE   84 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-------~~~~~~~~   84 (139)
                      .+|+++|+|+++++.|++++...+...+++++++|+.+. +...     .+   +||+|++....       .....+++
T Consensus        88 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~-----~~---~fD~v~~~~~l~~~~~~~~~~~~~l~  158 (298)
T 1ri5_A           88 GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-HMDL-----GK---EFDVISSQFSFHYAFSTSESLDIAQR  158 (298)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-CCCC-----SS---CEEEEEEESCGGGGGSSHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-ccCC-----CC---CcCEEEECchhhhhcCCHHHHHHHHH
Confidence            389999999999999999999888877899999999764 1101     35   89999987542       23456788


Q ss_pred             HHhhcccCCeEEEEeC
Q 044253           85 TLMTLFKVGGIVIYDN  100 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~  100 (139)
                      .+.++|+|||++++..
T Consensus       159 ~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          159 NIARHLRPGGYFIMTV  174 (298)
T ss_dssp             HHHHTEEEEEEEEEEE
T ss_pred             HHHHhcCCCCEEEEEE
Confidence            8889999999998753

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.63  E-value=1.2e-07  Score=76.35  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      .+|+++|+|+.+++.+++|++..|+.  ++++++|+......+.     ..   +||+|++|++...             
T Consensus       271 ~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~-----~~---~fD~Vl~D~Pcsg~g~~~~~p~~~~~  340 (429)
T 1sqg_A          271 AQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCG-----EQ---QFDRILLDAPCSATGVIRRHPDIKWL  340 (429)
T ss_dssp             CEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHT-----TC---CEEEEEEECCCCCGGGTTTCTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcc-----cC---CCCEEEEeCCCCcccccCCCcchhhc
Confidence            68999999999999999999999973  7999999987643231     35   7999999986431             


Q ss_pred             ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 ------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                  ...+++.+.++|+|||++++....+
T Consensus       341 ~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          341 RRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                        1356788889999999999866443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.63  E-value=5.2e-08  Score=71.97  Aligned_cols=83  Identities=22%  Similarity=0.265  Sum_probs=65.2

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------cc
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------DN   78 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------~~   78 (139)
                      +..+..+.+|+++|+|+++++.|++++...+.  +++++++|+.+. + .      ..   +||+|++....      ..
T Consensus        57 ~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~-~------~~---~fD~v~~~~~~~~~~~~~~  123 (252)
T 1wzn_A           57 LELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI-A-F------KN---EFDAVTMFFSTIMYFDEED  123 (252)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC-C-C------CS---CEEEEEECSSGGGGSCHHH
T ss_pred             HHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhc-c-c------CC---CccEEEEcCCchhcCCHHH
Confidence            34455577999999999999999999988875  699999999864 1 1      35   89999975321      23


Q ss_pred             hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ...+++.+.+.|+|||+++++-
T Consensus       124 ~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          124 LRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEec
Confidence            4567888889999999999863

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.62  E-value=5.6e-08  Score=77.45  Aligned_cols=84  Identities=8%  Similarity=0.075  Sum_probs=65.5

Q ss_pred             hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc
Q 044253            5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD   77 (139)
Q Consensus         5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~   77 (139)
                      +-+|+.++ +|++||.|+ +++.|+++++.+|+.++|+++++++.+.  .+      .+   +||+|+.+.-      ..
T Consensus        99 ~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~l------pe---~~DvivsE~~~~~l~~e~  166 (376)
T 4hc4_A           99 IFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV--EL------PE---QVDAIVSEWMGYGLLHES  166 (376)
T ss_dssp             HHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SS---CEEEEECCCCBTTBTTTC
T ss_pred             HHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee--cC------Cc---cccEEEeecccccccccc
Confidence            44555554 799999996 8999999999999999999999999875  22      35   8999998541      12


Q ss_pred             chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ....++....++|+|||.++.+.
T Consensus       167 ~l~~~l~a~~r~Lkp~G~~iP~~  189 (376)
T 4hc4_A          167 MLSSVLHARTKWLKEGGLLLPAS  189 (376)
T ss_dssp             SHHHHHHHHHHHEEEEEEEESCE
T ss_pred             hhhhHHHHHHhhCCCCceECCcc
Confidence            34566677778999999998543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.62  E-value=2.4e-08  Score=76.69  Aligned_cols=86  Identities=10%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chH
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYR   80 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~   80 (139)
                      |+++...+.++++||.+++.++..++|++.   .++++++++|+...+..+...   ..   +||+||+||++.   .+.
T Consensus       106 giEaLS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~---~~---~fdLVfiDPPYe~k~~~~  176 (283)
T 2oo3_A          106 AINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPP---PE---KRGLIFIDPSYERKEEYK  176 (283)
T ss_dssp             HHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSC---TT---SCEEEEECCCCCSTTHHH
T ss_pred             HHHHcCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCC---CC---CccEEEECCCCCCCcHHH
Confidence            445555678999999999999999999975   368999999999988765322   24   699999999865   455


Q ss_pred             HHHHHHhh--cccCCeEEEE
Q 044253           81 NYRETLMT--LFKVGGIVIY   98 (139)
Q Consensus        81 ~~~~~~~~--lL~~gG~ii~   98 (139)
                      ..++.+.+  .+.++|++++
T Consensus       177 ~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          177 EIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHHhCccCCCeEEEE
Confidence            66665553  6778898874

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.61  E-value=1.2e-08  Score=75.93  Aligned_cols=83  Identities=10%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH-HHHhhHHhhhcccCCCceeEEEEcCCCcchH---------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP-ALDQLLKDEKIHFFFENFDYAFVDAHKDNYR---------   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~-~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~---------   80 (139)
                      ..+|+++|+|+++++.|++|+..+++.++++++++|+.+ .+..+...  ...   +||+|+++++.....         
T Consensus        89 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~~---~fD~i~~npp~~~~~~~~~~~~~~  163 (254)
T 2h00_A           89 GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEE--SEI---IYDFCMCNPPFFANQLEAKGVNSR  163 (254)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTC--CSC---CBSEEEECCCCC------------
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcc--cCC---cccEEEECCCCccCcchhcccccc
Confidence            578999999999999999999999998789999999765 22222100  014   799999997543211         


Q ss_pred             ---------HHHHHHhhcccCCeEEEE
Q 044253           81 ---------NYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        81 ---------~~~~~~~~lL~~gG~ii~   98 (139)
                               .++..+.++|+|||.+.+
T Consensus       164 ~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          164 NPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             -------------CTTTTHHHHTHHHH
T ss_pred             cccccCCHHHHhhhHHHHEecCCEEEE
Confidence                     123445567778777643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.61  E-value=4.5e-08  Score=74.48  Aligned_cols=84  Identities=12%  Similarity=0.074  Sum_probs=64.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHH-hhhcccCCCceeEEEEcCCC--cchHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLK-DEKIHFFFENFDYAFVDAHK--DNYRNYRET   85 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~-~~~~~~~~~~fD~If~D~~~--~~~~~~~~~   85 (139)
                      ...+|+++|+|+.+++.|+++++.. +...+++++++|+.+.-  ... .....+   +||+|++....  -+...+++.
T Consensus        60 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~---~fD~V~~~~~l~~~~~~~~l~~  134 (299)
T 3g5t_A           60 PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK--FLGADSVDKQ---KIDMITAVECAHWFDFEKFQRS  134 (299)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG--GGCTTTTTSS---CEEEEEEESCGGGSCHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC--ccccccccCC---CeeEEeHhhHHHHhCHHHHHHH
Confidence            5678999999999999999999987 55578999999997642  110 000015   89999987532  156778899


Q ss_pred             HhhcccCCeEEEE
Q 044253           86 LMTLFKVGGIVIY   98 (139)
Q Consensus        86 ~~~lL~~gG~ii~   98 (139)
                      +.++|+|||.+++
T Consensus       135 ~~~~LkpgG~l~i  147 (299)
T 3g5t_A          135 AYANLRKDGTIAI  147 (299)
T ss_dssp             HHHHEEEEEEEEE
T ss_pred             HHHhcCCCcEEEE
Confidence            9999999999987

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.61  E-value=4.4e-08  Score=70.82  Aligned_cols=75  Identities=17%  Similarity=0.252  Sum_probs=60.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|+|+++++.|++++...++. +++++++|+...+..       ..   +||+|+++.......   +.+.++|+
T Consensus       103 ~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~---~fD~v~~~~~~~~~~---~~~~~~L~  168 (215)
T 2yxe_A          103 GLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEP-------LA---PYDRIYTTAAGPKIP---EPLIRQLK  168 (215)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGG-------GC---CEEEEEESSBBSSCC---HHHHHTEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCC-------CC---CeeEEEECCchHHHH---HHHHHHcC
Confidence            78999999999999999999998884 599999998543221       35   899999987544333   46789999


Q ss_pred             CCeEEEEeC
Q 044253           92 VGGIVIYDN  100 (139)
Q Consensus        92 ~gG~ii~~~  100 (139)
                      |||++++.-
T Consensus       169 pgG~lv~~~  177 (215)
T 2yxe_A          169 DGGKLLMPV  177 (215)
T ss_dssp             EEEEEEEEE
T ss_pred             CCcEEEEEE
Confidence            999998753

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.61  E-value=2.5e-08  Score=72.13  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------ch
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------NY   79 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------~~   79 (139)
                      ..+..+.+|+++|+|+++++.|++++...+   +++++++|+.+..  .      .+   +||+|++.....      ..
T Consensus        68 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~  133 (216)
T 3ofk_A           68 KLAPHCKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS--T------AE---LFDLIVVAEVLYYLEDMTQM  133 (216)
T ss_dssp             HHGGGEEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC--C------SC---CEEEEEEESCGGGSSSHHHH
T ss_pred             HHHHcCCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC--C------CC---CccEEEEccHHHhCCCHHHH
Confidence            344456789999999999999999987643   7999999998753  1      46   899999975321      22


Q ss_pred             HHHHHHHhhcccCCeEEEEeC
Q 044253           80 RNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ...++.+.++|+|||++++..
T Consensus       134 ~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          134 RTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEe
Confidence            456888999999999999854

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.61  E-value=3.5e-08  Score=72.80  Aligned_cols=85  Identities=12%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYR   83 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~   83 (139)
                      .+....+|+++|+|+++++.|++++...++. +++++++|+... + +.     .+   +||+|++....   .+....+
T Consensus        39 l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l  107 (239)
T 1xxl_A           39 FSPYVQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-FP-----DD---SFDIITCRYAAHHFSDVRKAV  107 (239)
T ss_dssp             HGGGSSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-SC-----TT---CEEEEEEESCGGGCSCHHHHH
T ss_pred             HHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C-CC-----CC---cEEEEEECCchhhccCHHHHH
Confidence            3444568999999999999999999988874 799999998653 2 11     35   89999987532   3457788


Q ss_pred             HHHhhcccCCeEEEEeCCC
Q 044253           84 ETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~~~  102 (139)
                      ..+.+.|+|||++++.+..
T Consensus       108 ~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A          108 REVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             HHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHcCCCcEEEEEEcC
Confidence            9999999999999885443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.61  E-value=7.2e-08  Score=76.31  Aligned_cols=83  Identities=18%  Similarity=0.105  Sum_probs=63.4

Q ss_pred             chhhhhhhc--ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253            4 NLESTFFIY--FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----   77 (139)
Q Consensus         4 ~~~~~~~~~--~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----   77 (139)
                      +++.+..+.  +|+++|+|+.+++.|++|++.+|+.++++++++|+.+.. ..      .+   +||+|++|++..    
T Consensus       232 ~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~-~~------~~---~fD~Ii~npPyg~r~~  301 (373)
T 3tm4_A          232 LIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS-QY------VD---SVDFAISNLPYGLKIG  301 (373)
T ss_dssp             HHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-GT------CS---CEEEEEEECCCC----
T ss_pred             HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-cc------cC---CcCEEEECCCCCcccC
Confidence            455666665  899999999999999999999999778999999998852 11      35   899999998632    


Q ss_pred             -------chHHHHHHHhhcccCCeEEE
Q 044253           78 -------NYRNYRETLMTLFKVGGIVI   97 (139)
Q Consensus        78 -------~~~~~~~~~~~lL~~gG~ii   97 (139)
                             .|..+++.+.+.| .|+.++
T Consensus       302 ~~~~~~~ly~~~~~~l~r~l-~g~~~~  327 (373)
T 3tm4_A          302 KKSMIPDLYMKFFNELAKVL-EKRGVF  327 (373)
T ss_dssp             --CCHHHHHHHHHHHHHHHE-EEEEEE
T ss_pred             cchhHHHHHHHHHHHHHHHc-CCeEEE
Confidence                   1355667777777 333333

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.61  E-value=2.5e-08  Score=77.06  Aligned_cols=79  Identities=14%  Similarity=0.164  Sum_probs=64.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc--C-C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV--E-V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR   80 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~--g-~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~   80 (139)
                      .+|+.||+|++.++.+++.+...  + + .+|++++.+|+..++...      .+   +||+|++|..-.       .-.
T Consensus       108 ~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~------~~---~yDvIi~D~~dp~~~~~~L~t~  178 (294)
T 3o4f_A          108 ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT------SQ---TFDVIISDCTDPIGPGESLFTS  178 (294)
T ss_dssp             CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS------SC---CEEEEEESCCCCCCTTCCSSCC
T ss_pred             ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc------cc---cCCEEEEeCCCcCCCchhhcCH
Confidence            57999999999999999997542  2 2 469999999999998653      46   899999996311       225


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.+.+.|+|||+++..
T Consensus       179 eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          179 AFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             HHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEe
Confidence            6889999999999999974

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.61  E-value=5.9e-08  Score=71.50  Aligned_cols=79  Identities=16%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             hhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253            8 TFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus         8 ~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      +... .+|+++|+++++++.|++++...|+. +++++.+|+...++.       ..   +||+|+++.......   +.+
T Consensus       110 a~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~---~fD~Ii~~~~~~~~~---~~~  175 (235)
T 1jg1_A          110 SEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPP-------KA---PYDVIIVTAGAPKIP---EPL  175 (235)
T ss_dssp             HHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GC---CEEEEEECSBBSSCC---HHH
T ss_pred             HHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCC-------CC---CccEEEECCcHHHHH---HHH
Confidence            3334 79999999999999999999999985 599999998332211       24   699999987644332   367


Q ss_pred             hhcccCCeEEEEeC
Q 044253           87 MTLFKVGGIVIYDN  100 (139)
Q Consensus        87 ~~lL~~gG~ii~~~  100 (139)
                      .+.|+|||++++.-
T Consensus       176 ~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          176 IEQLKIGGKLIIPV  189 (235)
T ss_dssp             HHTEEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEEE
Confidence            78999999998753

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.60  E-value=3e-08  Score=74.52  Aligned_cols=77  Identities=13%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc-C-CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV-E-VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g-~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+|+++|+|+++++.|+++++.. | +.++++++++|+.+..  +.     ..   +||+|+++.+  ....+++.+.+
T Consensus       124 ~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--~~-----~~---~~D~v~~~~~--~~~~~l~~~~~  191 (280)
T 1i9g_A          124 AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--LP-----DG---SVDRAVLDML--APWEVLDAVSR  191 (280)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--CC-----TT---CEEEEEEESS--CGGGGHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--CC-----CC---ceeEEEECCc--CHHHHHHHHHH
Confidence            578999999999999999999887 5 4568999999997651  11     35   8999999875  34567888999


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .|+|||++++.
T Consensus       192 ~L~pgG~l~~~  202 (280)
T 1i9g_A          192 LLVAGGVLMVY  202 (280)
T ss_dssp             HEEEEEEEEEE
T ss_pred             hCCCCCEEEEE
Confidence            99999999874

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.60  E-value=4.8e-08  Score=73.53  Aligned_cols=85  Identities=9%  Similarity=-0.027  Sum_probs=61.6

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHH----------cC------CCCcEEEEeCChHHHHHhhHHhhhcccCCCcee
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKK----------VE------VDLKINLMESRALPALDQLLKDEKIHFFFENFD   68 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~----------~g------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD   68 (139)
                      ...+..+.+|++||+|+.+++.|++....          .+      ...+++++++|+.+.-...      .+   +||
T Consensus        84 ~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~------~~---~FD  154 (252)
T 2gb4_A           84 KWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRAN------IG---KFD  154 (252)
T ss_dssp             HHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGC------CC---CEE
T ss_pred             HHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCccc------CC---CEE
Confidence            44566688999999999999999876531          00      1257999999998752110      15   899


Q ss_pred             EEEEcCC-----CcchHHHHHHHhhcccCCeEEEE
Q 044253           69 YAFVDAH-----KDNYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        69 ~If~D~~-----~~~~~~~~~~~~~lL~~gG~ii~   98 (139)
                      +|+.-..     ......++..+.++|+|||++++
T Consensus       155 ~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l  189 (252)
T 2gb4_A          155 RIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV  189 (252)
T ss_dssp             EEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            9996542     12345688999999999999864

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.59  E-value=3.1e-08  Score=71.81  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCC----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDL----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNY   82 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~   82 (139)
                      .+|+++|+|+++++.|++++...++.+    +++++++|+... +. .     .+   +||+|++.....     ....+
T Consensus        54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~-~-----~~---~fD~V~~~~~l~~~~~~~~~~~  123 (219)
T 3jwg_A           54 EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-DK-R-----FS---GYDAATVIEVIEHLDENRLQAF  123 (219)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-CG-G-----GT---TCSEEEEESCGGGCCHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-cc-c-----cC---CCCEEEEHHHHHhCCHHHHHHH
Confidence            689999999999999999998887754    899999998432 11 1     35   899999865322     22467


Q ss_pred             HHHHhhcccCCeEEEEeC
Q 044253           83 RETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~  100 (139)
                      ++.+.+.|+|||+++...
T Consensus       124 l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          124 EKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             HHHHHTTTCCSEEEEEEE
T ss_pred             HHHHHHhhCCCEEEEEcc
Confidence            888999999999887653

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.59  E-value=2.6e-08  Score=75.79  Aligned_cols=89  Identities=10%  Similarity=0.117  Sum_probs=68.0

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCC--CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC------C
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVD--LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA------H   75 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~--~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~------~   75 (139)
                      +...+..+.+|+++|+|+.+++.|++++...+..  .+++++++|+.+. + .      .+   +||+|++..      +
T Consensus        97 ~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~---~fD~v~~~~~~~~~~~  165 (299)
T 3g2m_A           97 TFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-A-L------DK---RFGTVVISSGSINELD  165 (299)
T ss_dssp             HHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-C-C------SC---CEEEEEECHHHHTTSC
T ss_pred             HHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-C-c------CC---CcCEEEECCcccccCC
Confidence            3444555789999999999999999999887642  5799999999874 2 1      35   899998642      1


Q ss_pred             CcchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           76 KDNYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        76 ~~~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      ......+++.+.++|+|||++++.....
T Consensus       166 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          166 EADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            1124678889999999999999865443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.59  E-value=6.7e-08  Score=75.58  Aligned_cols=83  Identities=13%  Similarity=0.061  Sum_probs=64.4

Q ss_pred             hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc
Q 044253            5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD   77 (139)
Q Consensus         5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~   77 (139)
                      +..+..+. +|+++|+|+ +++.|+++++.+|+.++++++++|+.+.  .+.     .+   +||+|+++..      ..
T Consensus        80 ~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-----~~---~~D~Ivs~~~~~~l~~~~  148 (340)
T 2fyt_A           80 MFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--HLP-----VE---KVDVIISEWMGYFLLFES  148 (340)
T ss_dssp             HHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--CCS-----CS---CEEEEEECCCBTTBTTTC
T ss_pred             HHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--cCC-----CC---cEEEEEEcCchhhccCHH
Confidence            33444444 899999996 9999999999999978999999999864  121     35   8999998761      12


Q ss_pred             chHHHHHHHhhcccCCeEEEE
Q 044253           78 NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~   98 (139)
                      ....++..+.++|+|||+++.
T Consensus       149 ~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          149 MLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             HHHHHHHHHHHHEEEEEEEES
T ss_pred             HHHHHHHHHHhhcCCCcEEEc
Confidence            345577888899999999984

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.58  E-value=7.1e-08  Score=70.46  Aligned_cols=82  Identities=18%  Similarity=0.198  Sum_probs=65.0

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CC------c
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HK------D   77 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~------~   77 (139)
                      ...+..+.+++++|+|+.+++.|++++...+.  +++++++|+.+. + .      .+   +||+|++.. ..      .
T Consensus        53 ~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~~l~~~~~~~  119 (246)
T 1y8c_A           53 ENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNL-N-I------NR---KFDLITCCLDSTNYIIDSD  119 (246)
T ss_dssp             HHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGC-C-C------SC---CEEEEEECTTGGGGCCSHH
T ss_pred             HHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccC-C-c------cC---CceEEEEcCccccccCCHH
Confidence            34444567899999999999999999988775  699999999764 1 1      24   899999975 22      2


Q ss_pred             chHHHHHHHhhcccCCeEEEEe
Q 044253           78 NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      .....++.+.++|+|||+++++
T Consensus       120 ~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          120 DLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEE
Confidence            3456788888999999999984

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.58  E-value=1.6e-07  Score=67.07  Aligned_cols=86  Identities=15%  Similarity=0.091  Sum_probs=66.4

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNY   82 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~   82 (139)
                      ..+..+.+|+++|+|+++++.|++++...+.  +++++++|+.+. + +.     .+   +||+|++....   .....+
T Consensus        46 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~~~~~~~~~~~  113 (202)
T 2kw5_A           46 FLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF-D-IV-----AD---AWEGIVSIFCHLPSSLRQQL  113 (202)
T ss_dssp             HHHTTTCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB-S-CC-----TT---TCSEEEEECCCCCHHHHHHH
T ss_pred             HHHhCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc-C-CC-----cC---CccEEEEEhhcCCHHHHHHH
Confidence            3344467999999999999999999988876  699999998764 1 21     35   89999985432   234567


Q ss_pred             HHHHhhcccCCeEEEEeCCCC
Q 044253           83 RETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      ++.+.++|+|||.+++.....
T Consensus       114 l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A          114 YPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             HHHHHTTCCSSEEEEEEEECT
T ss_pred             HHHHHHhcCCCcEEEEEEecc
Confidence            888899999999999875443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.56  E-value=5.1e-08  Score=70.66  Aligned_cols=83  Identities=16%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--Cc---chHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KD---NYRN   81 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~---~~~~   81 (139)
                      .+..+.+++++|+|+++++.|++++...+  .+++++++|+.+. + +.     .+   +||+|++...  ..   +...
T Consensus        56 l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~~-----~~---~~D~v~~~~~~~~~~~~~~~~  123 (227)
T 1ve3_A           56 LEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKL-S-FE-----DK---TFDYVIFIDSIVHFEPLELNQ  123 (227)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSC-C-SC-----TT---CEEEEEEESCGGGCCHHHHHH
T ss_pred             HHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcC-C-CC-----CC---cEEEEEEcCchHhCCHHHHHH
Confidence            34445589999999999999999998877  5799999998763 1 11     35   8999999765  22   3356


Q ss_pred             HHHHHhhcccCCeEEEEeCC
Q 044253           82 YRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~  101 (139)
                      +++.+.+.|+|||.+++...
T Consensus       124 ~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          124 VFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             HHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEEec
Confidence            78888899999999987644

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.56  E-value=9.8e-08  Score=74.20  Aligned_cols=84  Identities=13%  Similarity=0.110  Sum_probs=65.1

Q ss_pred             hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc
Q 044253            5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD   77 (139)
Q Consensus         5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~   77 (139)
                      +..+..+ .+|+++|+| .+++.|+++++.+|+.++++++++|+.+. . +.     .+   +||+|+++..      ..
T Consensus        54 ~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~-----~~---~~D~Ivs~~~~~~l~~~~  122 (328)
T 1g6q_1           54 MFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-H-LP-----FP---KVDIIISEWMGYFLLYES  122 (328)
T ss_dssp             HHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-C-CS-----SS---CEEEEEECCCBTTBSTTC
T ss_pred             HHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-c-CC-----CC---cccEEEEeCchhhcccHH
Confidence            3344444 489999999 69999999999999988999999999864 1 21     25   8999999752      12


Q ss_pred             chHHHHHHHhhcccCCeEEEEe
Q 044253           78 NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ....++..+.++|+|||+++.+
T Consensus       123 ~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          123 MMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             CHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHHHHHHHHhhcCCCeEEEEe
Confidence            3456778888999999999843

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.56  E-value=8.2e-08  Score=69.97  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      .+|+++|+|+.+++.|++++...+.    .++++++++|+......       ..   +||+|+++.....   +++.+.
T Consensus       103 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~---~fD~i~~~~~~~~---~~~~~~  169 (226)
T 1i1n_A          103 GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-------EA---PYDAIHVGAAAPV---VPQALI  169 (226)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------GC---CEEEEEECSBBSS---CCHHHH
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-------CC---CcCEEEECCchHH---HHHHHH
Confidence            5899999999999999999998764    45799999998753211       35   8999999986533   345778


Q ss_pred             hcccCCeEEEEeC
Q 044253           88 TLFKVGGIVIYDN  100 (139)
Q Consensus        88 ~lL~~gG~ii~~~  100 (139)
                      ++|+|||++++..
T Consensus       170 ~~LkpgG~lv~~~  182 (226)
T 1i1n_A          170 DQLKPGGRLILPV  182 (226)
T ss_dssp             HTEEEEEEEEEEE
T ss_pred             HhcCCCcEEEEEE
Confidence            9999999998853

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.55  E-value=1.3e-07  Score=74.12  Aligned_cols=83  Identities=11%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----Ccc
Q 044253            5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDN   78 (139)
Q Consensus         5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~   78 (139)
                      +..+..+ .+|++||+|+ +++.|+++++.+|+.++++++++|+.+.  .+      .+   +||+|++...     ...
T Consensus        66 ~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~------~~---~~D~Ivs~~~~~~~~~~~  133 (348)
T 2y1w_A           66 FFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PE---QVDIIISEPMGYMLFNER  133 (348)
T ss_dssp             HHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SS---CEEEEEECCCBTTBTTTS
T ss_pred             HHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC--CC------CC---ceeEEEEeCchhcCChHH
Confidence            3344444 4899999996 8999999999999988999999998764  12      35   8999999853     123


Q ss_pred             hHHHHHHHhhcccCCeEEEEe
Q 044253           79 YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ....+..+.++|+|||++++.
T Consensus       134 ~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          134 MLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             HHHHHHHGGGGEEEEEEEESC
T ss_pred             HHHHHHHHHhhcCCCeEEEEe
Confidence            456677788999999999854

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.55  E-value=7.5e-08  Score=76.99  Aligned_cols=53  Identities=8%  Similarity=-0.016  Sum_probs=47.2

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +|+++|+|+.+++.|++|++.+|+.++++++++|+.+...        ..   +||+|++||+.
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~---~fD~Iv~NPPY  317 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------ED---EYGVVVANPPY  317 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CC---CSCEEEECCCC
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CC---CCCEEEECCCC
Confidence            5999999999999999999999998889999999987521        35   89999999985

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.54  E-value=3.6e-08  Score=71.59  Aligned_cols=86  Identities=15%  Similarity=0.170  Sum_probs=66.2

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---c
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---N   78 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~   78 (139)
                      ..+..+.+|+++|+|+.+++.|++++...++    .++++++++|+... + ..     .+   +||+|++.....   +
T Consensus        47 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~~D~v~~~~~l~~~~~  116 (235)
T 3sm3_A           47 ELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-S-FH-----DS---SFDFAVMQAFLTSVPD  116 (235)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-C-SC-----TT---CEEEEEEESCGGGCCC
T ss_pred             HHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-C-CC-----CC---ceeEEEEcchhhcCCC
Confidence            3444577999999999999999999988776    34699999998764 2 11     35   899999875322   2


Q ss_pred             hH---HHHHHHhhcccCCeEEEEeCC
Q 044253           79 YR---NYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        79 ~~---~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      ..   .+++.+.++|+|||.+++...
T Consensus       117 ~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          117 PKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            23   688899999999999988643

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.54  E-value=6.8e-08  Score=70.56  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=61.0

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .+..+.+|+++|+|+++++.|++++...+   +++++++|+.+.+..       ..   +||+|+++.......   +.+
T Consensus        88 l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~-------~~---~fD~v~~~~~~~~~~---~~~  151 (231)
T 1vbf_A           88 IAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEE-------EK---PYDRVVVWATAPTLL---CKP  151 (231)
T ss_dssp             HHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGG-------GC---CEEEEEESSBBSSCC---HHH
T ss_pred             HHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccccc-------CC---CccEEEECCcHHHHH---HHH
Confidence            33445789999999999999999998776   799999999763221       35   899999987544332   467


Q ss_pred             hhcccCCeEEEEeC
Q 044253           87 MTLFKVGGIVIYDN  100 (139)
Q Consensus        87 ~~lL~~gG~ii~~~  100 (139)
                      .++|+|||++++..
T Consensus       152 ~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          152 YEQLKEGGIMILPI  165 (231)
T ss_dssp             HHTEEEEEEEEEEE
T ss_pred             HHHcCCCcEEEEEE
Confidence            78999999998753

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.54  E-value=1.1e-07  Score=75.89  Aligned_cols=74  Identities=9%  Similarity=-0.054  Sum_probs=56.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHHHHH
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNYRET   85 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~~~~   85 (139)
                      +|+++|+|+++++.|++|++.+|+.++++++++|+.+...        ..   +||+|++||++.       ....++..
T Consensus       258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~---~fD~Iv~NPPYG~rl~~~~~l~~ly~~  326 (384)
T 3ldg_A          258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NK---INGVLISNPPYGERLLDDKAVDILYNE  326 (384)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CC---CSCEEEECCCCTTTTSCHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cC---CcCEEEECCchhhccCCHHHHHHHHHH
Confidence            4999999999999999999999998889999999987521        35   899999999753       22334444


Q ss_pred             HhhcccC--CeEEE
Q 044253           86 LMTLFKV--GGIVI   97 (139)
Q Consensus        86 ~~~lL~~--gG~ii   97 (139)
                      +.+.|++  ||.+.
T Consensus       327 lg~~lk~~~g~~~~  340 (384)
T 3ldg_A          327 MGETFAPLKTWSQF  340 (384)
T ss_dssp             HHHHHTTCTTSEEE
T ss_pred             HHHHHhhCCCcEEE
Confidence            4444444  66543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.53  E-value=1.1e-07  Score=69.94  Aligned_cols=79  Identities=10%  Similarity=0.061  Sum_probs=62.5

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYR   80 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~   80 (139)
                      ..+..+.+|+++|+|+++++.|+++         ++++++|+.+.+..+.     .+   +||+|++....     ....
T Consensus        58 ~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~-----~~---~fD~i~~~~~l~~~~~~~~~  120 (240)
T 3dli_A           58 LCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLP-----DK---YLDGVMISHFVEHLDPERLF  120 (240)
T ss_dssp             HHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSC-----TT---CBSEEEEESCGGGSCGGGHH
T ss_pred             HHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcC-----CC---CeeEEEECCchhhCCcHHHH
Confidence            3344577899999999999999876         7899999998764442     35   89999986532     2457


Q ss_pred             HHHHHHhhcccCCeEEEEeCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      .+++.+.+.|+|||++++...
T Consensus       121 ~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          121 ELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             HHHHHHHHHBCTTCCEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEEEeC
Confidence            889999999999999998644

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.53  E-value=5.7e-08  Score=73.55  Aligned_cols=67  Identities=15%  Similarity=0.114  Sum_probs=55.2

Q ss_pred             CchhhhhhhcceeEEeCCc-------cHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253            3 FNLESTFFIYFIVAIDVSR-------ESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~-------~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      +++..+..+.+|+++|+|+       ++++.|++|++.+++.++++++++|+.++++.+...   ..   +||+|++|+.
T Consensus        97 ~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~---~~---~fD~V~~dP~  170 (258)
T 2r6z_A           97 DSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT---QG---KPDIVYLDPM  170 (258)
T ss_dssp             HHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH---HC---CCSEEEECCC
T ss_pred             HHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc---CC---CccEEEECCC
Confidence            3556666788999999999       999999999998888667999999999987655311   15   8999999984

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.53  E-value=8.5e-08  Score=70.15  Aligned_cols=75  Identities=15%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-C------cchHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-K------DNYRNYRE   84 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-~------~~~~~~~~   84 (139)
                      .+|+++|+|+++++.|++++...+  .+++++++|+.+. + .      ..   +||+|++..+ .      ......++
T Consensus        55 ~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~~~~~~~~~~~~~~~l~  121 (243)
T 3d2l_A           55 YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMREL-E-L------PE---PVDAITILCDSLNYLQTEADVKQTFD  121 (243)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGC-C-C------SS---CEEEEEECTTGGGGCCSHHHHHHHHH
T ss_pred             CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhc-C-C------CC---CcCEEEEeCCchhhcCCHHHHHHHHH
Confidence            689999999999999999998877  4699999998764 1 1      35   8999998641 1      23456788


Q ss_pred             HHhhcccCCeEEEEe
Q 044253           85 TLMTLFKVGGIVIYD   99 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~   99 (139)
                      .+.++|+|||+++++
T Consensus       122 ~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          122 SAARLLTDGGKLLFD  136 (243)
T ss_dssp             HHHHHEEEEEEEEEE
T ss_pred             HHHHhcCCCeEEEEE
Confidence            888999999999984

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.52  E-value=1.2e-07  Score=75.62  Aligned_cols=82  Identities=15%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc---CC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----c---
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV---EV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----D---   77 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~---g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----~---   77 (139)
                      .+|+.||+|++.++.+++.+...   .+    .++++++.+|+..++++....   ..   +||+|++|..-    .   
T Consensus       229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~---~~---~yDvIIvDl~D~~~s~~p~  302 (381)
T 3c6k_A          229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE---GR---EFDYVINDLTAVPISTSPE  302 (381)
T ss_dssp             SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---TC---CEEEEEEECCSSCCCCC--
T ss_pred             ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc---cC---ceeEEEECCCCCcccCccc
Confidence            47999999999999999986421   11    246999999999999765432   35   79999999521    0   


Q ss_pred             ------chHHHHHHHhhcccCCeEEEEe
Q 044253           78 ------NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ------~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                            ....+++.+.+.|+|||+++..
T Consensus       303 g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          303 EDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             --CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence                  1245678888999999999864

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.51  E-value=5.9e-08  Score=78.11  Aligned_cols=63  Identities=17%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHc--CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKV--EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~--g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +..+..+.+|++||+|+.+++.|++|++.+  |+ ++++++++|+.++++...     ..   +||+||+||+.
T Consensus       109 l~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~---~fDvV~lDPPr  173 (410)
T 3ll7_A          109 IALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TF---HPDYIYVDPAR  173 (410)
T ss_dssp             HHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HH---CCSEEEECCEE
T ss_pred             HHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CC---CceEEEECCCC
Confidence            455666789999999999999999999988  88 689999999998766532     25   89999999853

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.50  E-value=1e-07  Score=72.12  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +.+|+++|+|+.+++.|++++...+.  +++++++|+.+. + .      .+   +||+|++...   ..+...+++.+.
T Consensus        47 ~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~-~------~~---~fD~v~~~~~l~~~~~~~~~l~~~~  113 (284)
T 3gu3_A           47 GSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-L------ND---KYDIAICHAFLLHMTTPETMLQKMI  113 (284)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-C------SS---CEEEEEEESCGGGCSSHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhc-C-c------CC---CeeEEEECChhhcCCCHHHHHHHHH
Confidence            47899999999999999999987775  799999999863 2 1      35   8999999763   234577899999


Q ss_pred             hcccCCeEEEEeCCCC
Q 044253           88 TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~  103 (139)
                      +.|+|||++++.+..|
T Consensus       114 ~~LkpgG~l~~~~~~~  129 (284)
T 3gu3_A          114 HSVKKGGKIICFEPHW  129 (284)
T ss_dssp             HTEEEEEEEEEEECCH
T ss_pred             HHcCCCCEEEEEecch
Confidence            9999999999876553

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.50  E-value=1.9e-07  Score=66.76  Aligned_cols=81  Identities=6%  Similarity=-0.106  Sum_probs=63.0

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYR   80 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~   80 (139)
                      ..+..+.+|+++|+|+++++.|+++.      .+++++++|+.+. + ..     .+   +||+|++...     ..+..
T Consensus        58 ~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~  121 (203)
T 3h2b_A           58 HLASLGHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-S-DS-----PK---RWAGLLAWYSLIHMGPGELP  121 (203)
T ss_dssp             HHHHTTCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-G-GS-----CC---CEEEEEEESSSTTCCTTTHH
T ss_pred             HHHhcCCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-c-cC-----CC---CeEEEEehhhHhcCCHHHHH
Confidence            34445679999999999999999872      3689999999874 2 21     36   8999999652     23567


Q ss_pred             HHHHHHhhcccCCeEEEEeCCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      .+++.+.+.|+|||.+++....
T Consensus       122 ~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A          122 DALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHcCCCcEEEEEEcc
Confidence            7899999999999999986543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.50  E-value=1.1e-07  Score=70.22  Aligned_cols=83  Identities=18%  Similarity=0.133  Sum_probs=64.1

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRN   81 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~   81 (139)
                      ...+..+.+|+++|+|+++++.|++++ . +...+++++++|+.+. + +.     .+   +||+|++....   .+...
T Consensus        55 ~~l~~~~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~  122 (263)
T 2yqz_A           55 LPLIARGYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-LP-----DE---SVHGVIVVHLWHLVPDWPK  122 (263)
T ss_dssp             HHHHTTTCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-SC-----TT---CEEEEEEESCGGGCTTHHH
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-CC-----CC---CeeEEEECCchhhcCCHHH
Confidence            344445679999999999999999998 2 3336799999999753 2 21     35   89999987542   24577


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      .++.+.+.|+|||++++.
T Consensus       123 ~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          123 VLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHCCCCcEEEEE
Confidence            889999999999999886

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.49  E-value=1.2e-07  Score=69.71  Aligned_cols=78  Identities=13%  Similarity=0.005  Sum_probs=60.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-chHHHHHHHhhcc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-NYRNYRETLMTLF   90 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~~~~~~~~~~~lL   90 (139)
                      .+|+++|+|+++++.|+++++..   ++++++++|+.........    ..   +||+|+.+.... ....+++.+.+.|
T Consensus        99 ~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~----~~---~~D~v~~~~~~~~~~~~~l~~~~~~L  168 (230)
T 1fbn_A           99 GIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANI----VE---KVDVIYEDVAQPNQAEILIKNAKWFL  168 (230)
T ss_dssp             SEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTT----SC---CEEEEEECCCSTTHHHHHHHHHHHHE
T ss_pred             cEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccccccc----Cc---cEEEEEEecCChhHHHHHHHHHHHhC
Confidence            68999999999999999997654   5799999998762110100    24   899999886432 2366788999999


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +|||++++.
T Consensus       169 kpgG~l~i~  177 (230)
T 1fbn_A          169 KKGGYGMIA  177 (230)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999985

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.49  E-value=6.5e-08  Score=71.65  Aligned_cols=92  Identities=20%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCC----------------------------CCcE-EEEeCChHHHHHhh
Q 044253            5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEV----------------------------DLKI-NLMESRALPALDQL   54 (139)
Q Consensus         5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~----------------------------~~~i-~~~~~da~~~l~~~   54 (139)
                      +..+..+. +|+++|+|+.+++.|++++...+.                            ..++ +++++|+.+... .
T Consensus        72 ~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~-~  150 (265)
T 2i62_A           72 LLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQP-L  150 (265)
T ss_dssp             GTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSST-T
T ss_pred             HHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCC-C
Confidence            33444454 899999999999999999865431                            1137 999999876422 1


Q ss_pred             HHhhhcccCCCceeEEEEcCCCc-------chHHHHHHHhhcccCCeEEEEeCCC
Q 044253           55 LKDEKIHFFFENFDYAFVDAHKD-------NYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        55 ~~~~~~~~~~~~fD~If~D~~~~-------~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      ...  ...   +||+|++.....       .+...+..+.++|+|||++++....
T Consensus       151 ~~~--~~~---~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          151 GGV--SLP---PADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             TTC--CCC---CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             Ccc--ccC---CccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            100  015   899999865322       4567788899999999999987643

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.48  E-value=1.3e-07  Score=67.71  Aligned_cols=81  Identities=10%  Similarity=0.141  Sum_probs=63.8

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHH
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYR   83 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~   83 (139)
                      ..+.+|+++|+|+++++.|++++...+  .+++++++|+.+. + +.     .+   +||+|++....     ......+
T Consensus        44 ~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~~~l  111 (209)
T 2p8j_A           44 EDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKL-P-FK-----DE---SMSFVYSYGTIFHMRKNDVKEAI  111 (209)
T ss_dssp             HTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSC-C-SC-----TT---CEEEEEECSCGGGSCHHHHHHHH
T ss_pred             hCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhC-C-CC-----CC---ceeEEEEcChHHhCCHHHHHHHH
Confidence            356799999999999999999998776  3689999998763 2 21     35   89999986432     2346678


Q ss_pred             HHHhhcccCCeEEEEeCC
Q 044253           84 ETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~~  101 (139)
                      +.+.+.|+|||++++...
T Consensus       112 ~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A          112 DEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCcEEEEEEe
Confidence            888999999999998654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.48  E-value=7.7e-08  Score=70.21  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=61.6

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRE   84 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~   84 (139)
                      +..+.+|+++|+|+++++.|++++..     +++++++|+.+..   .     .+   +||+|++....   .+....++
T Consensus        61 ~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~---~-----~~---~fD~v~~~~~l~~~~~~~~~l~  124 (250)
T 2p7i_A           61 QEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ---L-----PR---RYDNIVLTHVLEHIDDPVALLK  124 (250)
T ss_dssp             TTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC---C-----SS---CEEEEEEESCGGGCSSHHHHHH
T ss_pred             HHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC---c-----CC---cccEEEEhhHHHhhcCHHHHHH
Confidence            33456899999999999999987643     6999999998751   1     46   89999986532   34577899


Q ss_pred             HHh-hcccCCeEEEEeC
Q 044253           85 TLM-TLFKVGGIVIYDN  100 (139)
Q Consensus        85 ~~~-~lL~~gG~ii~~~  100 (139)
                      .+. ++|+|||++++..
T Consensus       125 ~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          125 RINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             HHHHTTEEEEEEEEEEE
T ss_pred             HHHHHhcCCCCEEEEEc
Confidence            999 9999999998864

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.48  E-value=7e-08  Score=70.52  Aligned_cols=79  Identities=13%  Similarity=0.130  Sum_probs=62.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-----HHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-----RNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-----~~~~~~   85 (139)
                      +.+++++|+|+.+++.|++++...+   +++++++|+.+..  .      .+   +||+|++.......     ..+++.
T Consensus        68 ~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~~~l~~  133 (234)
T 3dtn_A           68 EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYD--F------EE---KYDMVVSALSIHHLEDEDKKELYKR  133 (234)
T ss_dssp             TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCC--C------CS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccC--C------CC---CceEEEEeCccccCCHHHHHHHHHH
Confidence            6799999999999999999886554   7999999997642  1      24   89999997643222     247888


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.|+|||++++.+...
T Consensus       134 ~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          134 SYSILKESGIFINADLVH  151 (234)
T ss_dssp             HHHHEEEEEEEEEEEECB
T ss_pred             HHHhcCCCcEEEEEEecC
Confidence            999999999999866544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.48  E-value=1.5e-07  Score=77.10  Aligned_cols=82  Identities=11%  Similarity=0.054  Sum_probs=64.0

Q ss_pred             hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cc
Q 044253            5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DN   78 (139)
Q Consensus         5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~   78 (139)
                      +..+..+ .+|+++|+|+ +++.|+++++.+|+.++++++++|+.+.  .+      .+   +||+|++++..     ..
T Consensus       174 ~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~--~~------~~---~fD~Ivs~~~~~~~~~e~  241 (480)
T 3b3j_A          174 FFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PE---QVDIIISEPMGYMLFNER  241 (480)
T ss_dssp             HHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SS---CEEEEECCCCHHHHTCHH
T ss_pred             HHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC--cc------CC---CeEEEEEeCchHhcCcHH
Confidence            3444443 5899999999 9999999999999988999999999764  12      35   89999998641     22


Q ss_pred             hHHHHHHHhhcccCCeEEEE
Q 044253           79 YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~   98 (139)
                      ....+..+.++|+|||++++
T Consensus       242 ~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          242 MLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HHHHHHHGGGGEEEEEEEES
T ss_pred             HHHHHHHHHHhcCCCCEEEE
Confidence            34456667789999999985

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.48  E-value=7.6e-08  Score=70.46  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=60.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      .+|+++|+++++++.|++++...+.    .++++++++|+...++.       ..   +||+|+++......   .+.+.
T Consensus       115 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~---~fD~I~~~~~~~~~---~~~~~  181 (227)
T 1r18_A          115 TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-------NA---PYNAIHVGAAAPDT---PTELI  181 (227)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-------GC---SEEEEEECSCBSSC---CHHHH
T ss_pred             CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-------CC---CccEEEECCchHHH---HHHHH
Confidence            4899999999999999999988762    25799999999863221       25   89999999865433   36778


Q ss_pred             hcccCCeEEEEeC
Q 044253           88 TLFKVGGIVIYDN  100 (139)
Q Consensus        88 ~lL~~gG~ii~~~  100 (139)
                      ++|+|||++++.-
T Consensus       182 ~~LkpgG~lvi~~  194 (227)
T 1r18_A          182 NQLASGGRLIVPV  194 (227)
T ss_dssp             HTEEEEEEEEEEE
T ss_pred             HHhcCCCEEEEEE
Confidence            9999999999864

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.48  E-value=8.8e-08  Score=70.54  Aligned_cols=80  Identities=6%  Similarity=0.041  Sum_probs=62.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~   85 (139)
                      ..+|+++|+|+.+++.|++++...+ ..+++++++|+....  ..     .+   +||+|++.....     .+..+++.
T Consensus       102 ~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~--~~-----~~---~fD~v~~~~~l~~~~~~~~~~~l~~  170 (241)
T 2ex4_A          102 FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFT--PE-----PD---SYDVIWIQWVIGHLTDQHLAEFLRR  170 (241)
T ss_dssp             CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCC--CC-----SS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcC--CC-----CC---CEEEEEEcchhhhCCHHHHHHHHHH
Confidence            4589999999999999999988765 357999999987642  11     35   799999985422     13467888


Q ss_pred             HhhcccCCeEEEEeCC
Q 044253           86 LMTLFKVGGIVIYDNT  101 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~  101 (139)
                      +.++|+|||++++.+.
T Consensus       171 ~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          171 CKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHhcCCCeEEEEEEc
Confidence            9999999999988543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.47  E-value=1.4e-07  Score=75.17  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      .+|+++|+|+.+++.|++|+..+|+.+++++.++|+.+...        ..   +||+|++||+..
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~---~~D~Iv~NPPyg  312 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------ED---EFGFIITNPPYG  312 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SC---BSCEEEECCCCC
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CC---CCcEEEECCCCc
Confidence            46999999999999999999999998789999999987521        35   899999999863

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.47  E-value=1.1e-07  Score=70.38  Aligned_cols=79  Identities=8%  Similarity=0.046  Sum_probs=62.4

Q ss_pred             hhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHH
Q 044253            7 STFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNY   82 (139)
Q Consensus         7 ~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~   82 (139)
                      .+..+. +|+++|+|+++++.|++++.    ..+++++++|+... + ..     .+   +||+|++....   .+...+
T Consensus        62 l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~  127 (253)
T 3g5l_A           62 AAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDI-A-IE-----PD---AYNVVLSSLALHYIASFDDI  127 (253)
T ss_dssp             HHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGC-C-CC-----TT---CEEEEEEESCGGGCSCHHHH
T ss_pred             HHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhC-C-CC-----CC---CeEEEEEchhhhhhhhHHHH
Confidence            344445 89999999999999998865    35799999999754 2 11     35   89999997632   356778


Q ss_pred             HHHHhhcccCCeEEEEe
Q 044253           83 RETLMTLFKVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~   99 (139)
                      ++.+.++|+|||.+++.
T Consensus       128 l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          128 CKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             HHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHcCCCcEEEEE
Confidence            99999999999999985

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.47  E-value=3.3e-07  Score=67.25  Aligned_cols=78  Identities=18%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-HHHHHHHhhcc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-RNYRETLMTLF   90 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-~~~~~~~~~lL   90 (139)
                      .+|+++|+|+++++.+.++.+..   .+++++++|+.+... +...   ..   +||+|++|...... ..++..+.+.|
T Consensus       103 ~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~-~~~~---~~---~~D~V~~~~~~~~~~~~~~~~~~~~L  172 (233)
T 2ipx_A          103 GLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHK-YRML---IA---MVDVIFADVAQPDQTRIVALNAHTFL  172 (233)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGG-GGGG---CC---CEEEEEECCCCTTHHHHHHHHHHHHE
T ss_pred             cEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhh-hccc---CC---cEEEEEEcCCCccHHHHHHHHHHHHc
Confidence            68999999999988888888765   579999999986421 1100   35   89999999863332 34577788999


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +|||++++.
T Consensus       173 kpgG~l~i~  181 (233)
T 2ipx_A          173 RNGGHFVIS  181 (233)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCeEEEEE
Confidence            999999984

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.46  E-value=6.5e-07  Score=67.98  Aligned_cols=87  Identities=10%  Similarity=0.001  Sum_probs=58.0

Q ss_pred             chhhhhhhc-ceeEEeC-CccHHHHHHHHH-----HHcCCC----CcEEEEeCCh----HHHHHhhHHhhhcccCCCcee
Q 044253            4 NLESTFFIY-FIVAIDV-SRESSETGLPII-----KKVEVD----LKINLMESRA----LPALDQLLKDEKIHFFFENFD   68 (139)
Q Consensus         4 ~~~~~~~~~-~v~~vD~-s~~~~~~Ar~n~-----~~~g~~----~~i~~~~~da----~~~l~~~~~~~~~~~~~~~fD   68 (139)
                      ++..+..+. +|+++|+ |+++++.|++|+     +.+++.    ++++++..+.    ......+.     ..   +||
T Consensus        94 ~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~---~fD  165 (281)
T 3bzb_A           94 SIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTG-----LQ---RFQ  165 (281)
T ss_dssp             HHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHS-----CS---SBS
T ss_pred             HHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhcc-----CC---CCC
Confidence            344555555 8999999 899999999999     555654    4788885443    22222111     35   899


Q ss_pred             EEEE-cCCC--cchHHHHHHHhhccc---C--CeEEEE
Q 044253           69 YAFV-DAHK--DNYRNYRETLMTLFK---V--GGIVIY   98 (139)
Q Consensus        69 ~If~-D~~~--~~~~~~~~~~~~lL~---~--gG~ii~   98 (139)
                      +|++ |...  .....+++.+.++|+   |  ||.+++
T Consensus       166 ~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          166 VVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             EEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             EEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            9997 6533  346778899999999   9  997654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.46  E-value=4.4e-07  Score=68.42  Aligned_cols=87  Identities=14%  Similarity=0.075  Sum_probs=64.8

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCC---CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-C---Ccc
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVD---LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-H---KDN   78 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~---~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~---~~~   78 (139)
                      ..+..+.+|+++|+|+++++.|+++....+..   .++.+..+|+......+..    .+   +||+|++.+ .   ...
T Consensus        74 ~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~---~fD~V~~~g~~l~~~~~  146 (293)
T 3thr_A           74 MLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA----GD---GFDAVICLGNSFAHLPD  146 (293)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC----TT---CEEEEEECTTCGGGSCC
T ss_pred             HHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc----CC---CeEEEEEcChHHhhcCc
Confidence            34445679999999999999999987554432   4688999999876322210    35   899999962 1   122


Q ss_pred             -------hHHHHHHHhhcccCCeEEEEe
Q 044253           79 -------YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 -------~~~~~~~~~~lL~~gG~ii~~   99 (139)
                             ...+++.+.++|+|||++++.
T Consensus       147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  174 (293)
T 3thr_A          147 SKGDQSEHRLALKNIASMVRPGGLLVID  174 (293)
T ss_dssp             SSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                   567889999999999999975

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.46  E-value=2.8e-07  Score=71.91  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------hHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------YRNYR   83 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------~~~~~   83 (139)
                      .+|+++|+|+.+++.|++++..+++.  ++++.+|+.+..         .+   +||+|+++++...        ...++
T Consensus       221 ~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~---------~~---~fD~Iv~~~~~~~g~~~~~~~~~~~l  286 (343)
T 2pjd_A          221 IRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV---------KG---RFDMIISNPPFHDGMQTSLDAAQTLI  286 (343)
T ss_dssp             CBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC---------CS---CEEEEEECCCCCSSSHHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc---------cC---CeeEEEECCCcccCccCCHHHHHHHH
Confidence            58999999999999999999998874  677899987542         35   8999999876432        35678


Q ss_pred             HHHhhcccCCeEEEEe
Q 044253           84 ETLMTLFKVGGIVIYD   99 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~   99 (139)
                      +.+.+.|+|||.+++-
T Consensus       287 ~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          287 RGAVRHLNSGGELRIV  302 (343)
T ss_dssp             HHHGGGEEEEEEEEEE
T ss_pred             HHHHHhCCCCcEEEEE
Confidence            8888999999999874

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.46  E-value=5.5e-07  Score=72.95  Aligned_cols=84  Identities=13%  Similarity=0.162  Sum_probs=63.7

Q ss_pred             cceeEEeCCccHHHHH-------HHHHHHcCCC-CcEEEEeCChHHH---HHhhHHhhhcccCCCceeEEEEcCC--Ccc
Q 044253           12 YFIVAIDVSRESSETG-------LPIIKKVEVD-LKINLMESRALPA---LDQLLKDEKIHFFFENFDYAFVDAH--KDN   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~A-------r~n~~~~g~~-~~i~~~~~da~~~---l~~~~~~~~~~~~~~~fD~If~D~~--~~~   78 (139)
                      .+|++||+++++++.|       +++++..|+. ++++++++|....   +...      ..   +||+|++...  ...
T Consensus       267 ~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~------~~---~FDvIvvn~~l~~~d  337 (433)
T 1u2z_A          267 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL------IP---QCDVILVNNFLFDED  337 (433)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH------GG---GCSEEEECCTTCCHH
T ss_pred             CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc------cC---CCCEEEEeCcccccc
Confidence            4799999999999999       9999999953 6899999865421   2211      25   8999998632  234


Q ss_pred             hHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253           79 YRNYRETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                      ....+..+.+.|+|||.+++.+.+..
T Consensus       338 ~~~~L~el~r~LKpGG~lVi~d~f~p  363 (433)
T 1u2z_A          338 LNKKVEKILQTAKVGCKIISLKSLRS  363 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred             HHHHHHHHHHhCCCCeEEEEeeccCC
Confidence            55677889999999999999765443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.45  E-value=1.8e-07  Score=68.37  Aligned_cols=86  Identities=17%  Similarity=0.103  Sum_probs=62.9

Q ss_pred             CCchhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            2 PFNLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         2 ~~~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      |+|++++..  .++++++|+|+.|++.+++|+..+|...++++  +|......        .+   +||+|++--.....
T Consensus        62 plAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~--------~~---~~DvVLa~k~LHlL  128 (200)
T 3fzg_A           62 PLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY--------KG---TYDVVFLLKMLPVL  128 (200)
T ss_dssp             HHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT--------TS---EEEEEEEETCHHHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC--------CC---CcChhhHhhHHHhh
Confidence            567777444  66999999999999999999999999767777  56654321        36   89999975322111


Q ss_pred             ---HHHHHHHhhcccCCeEEEEeC
Q 044253           80 ---RNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        80 ---~~~~~~~~~lL~~gG~ii~~~  100 (139)
                         ...+..+.+.|++||++|.-.
T Consensus       129 ~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          129 KQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             hhhHHHHHHHHHHhCCCCEEEEeC
Confidence               112336789999999999765

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.43  E-value=6.3e-08  Score=71.65  Aligned_cols=80  Identities=14%  Similarity=0.105  Sum_probs=63.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~~   85 (139)
                      +.+|+++|+|+++++.|++++...   ++++++++|+.+. + ..     .+   +||+|++....     .+...+++.
T Consensus        78 ~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~~~l~~  144 (266)
T 3ujc_A           78 GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-E-FP-----EN---NFDLIYSRDAILALSLENKNKLFQK  144 (266)
T ss_dssp             CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-C-CC-----TT---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-C-CC-----CC---cEEEEeHHHHHHhcChHHHHHHHHH
Confidence            679999999999999999887554   5899999999764 2 21     35   89999997532     345667888


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.++|+|||.+++.+...
T Consensus       145 ~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          145 CYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             HHHHEEEEEEEEEEEEEE
T ss_pred             HHHHcCCCCEEEEEEecc
Confidence            999999999999876533

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.43  E-value=5.4e-07  Score=72.83  Aligned_cols=84  Identities=11%  Similarity=0.058  Sum_probs=62.2

Q ss_pred             ceeEEeCCccHHHHHHHHH-------HHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHH
Q 044253           13 FIVAIDVSRESSETGLPII-------KKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNY   82 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~-------~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~   82 (139)
                      +|++||+++++++.|+++.       +.+|+ .+++++++||+.+. +. ...   -.   .||+||+....  ......
T Consensus       199 kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l-p~-~d~---~~---~aDVVf~Nn~~F~pdl~~a  270 (438)
T 3uwp_A          199 HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-EW-RER---IA---NTSVIFVNNFAFGPEVDHQ  270 (438)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH-HH-HHH---HH---TCSEEEECCTTCCHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC-cc-ccc---cC---CccEEEEcccccCchHHHH
Confidence            5999999999999999875       34566 36899999999875 21 100   14   79999997642  233455


Q ss_pred             HHHHhhcccCCeEEEEeCCCCC
Q 044253           83 RETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                      +..+.+.|+|||.|++.+....
T Consensus       271 L~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          271 LKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHHHHTTSCTTCEEEESSCSSC
T ss_pred             HHHHHHcCCCCcEEEEeecccC
Confidence            6777899999999998755543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.42  E-value=1.9e-06  Score=68.22  Aligned_cols=84  Identities=14%  Similarity=0.049  Sum_probs=65.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCC-----CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVD-----LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-----~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------   78 (139)
                      ...|+++|+|+..+...++|++..+..     .++.+...|+..+-...      .+   .||.|++|++...       
T Consensus       172 ~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~------~~---~fD~VLlDaPCSg~g~g~~r  242 (359)
T 4fzv_A          172 CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE------GD---TYDRVLVDVPCTTDRHSLHE  242 (359)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS------TT---CEEEEEEECCCCCHHHHTTC
T ss_pred             CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc------cc---cCCEEEECCccCCCCCcccc
Confidence            457999999999999999999988753     47999999998764322      35   8999999986432       


Q ss_pred             --------------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 --------------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 --------------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                          -..+++.+.++|+|||+||+.....
T Consensus       243 ~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          243 EENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             CTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             cChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence                                0235666778999999999865554

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.41  E-value=2.7e-07  Score=72.96  Aligned_cols=85  Identities=7%  Similarity=0.067  Sum_probs=66.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc-----C-C-CCcEEEEeCChHHHHH----hhHHhhhcccCCCceeEEEEcCCC---
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV-----E-V-DLKINLMESRALPALD----QLLKDEKIHFFFENFDYAFVDAHK---   76 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~-----g-~-~~~i~~~~~da~~~l~----~~~~~~~~~~~~~~fD~If~D~~~---   76 (139)
                      ..+|+++|+|+++++.|+++++..     | + ..+++++++|+.+...    .+.     .+   +||+|++....   
T Consensus       108 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~-----~~---~fD~V~~~~~l~~~  179 (383)
T 4fsd_A          108 HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP-----DS---SVDIVISNCVCNLS  179 (383)
T ss_dssp             TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC-----TT---CEEEEEEESCGGGC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC-----CC---CEEEEEEccchhcC
Confidence            458999999999999999998765     4 3 2589999999986421    111     35   89999997632   


Q ss_pred             cchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      .+...+++.+.++|+|||++++.+...
T Consensus       180 ~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          180 TNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            346778999999999999999876544

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.41  E-value=8.2e-07  Score=68.39  Aligned_cols=82  Identities=17%  Similarity=0.256  Sum_probs=58.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCC-----cEEEEeCCh----H-HHHHh-hHHhhhcccCCCceeEEEEcCCC---
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDL-----KINLMESRA----L-PALDQ-LLKDEKIHFFFENFDYAFVDAHK---   76 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-----~i~~~~~da----~-~~l~~-~~~~~~~~~~~~~fD~If~D~~~---   76 (139)
                      +.+|+++|+|+++++.|++.....+...     .++++++|+    . ..+.. ..     .+   +||+|++-...   
T Consensus        71 ~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~-----~~---~FD~V~~~~~lhy~  142 (302)
T 2vdw_A           71 IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY-----FG---KFNIIDWQFAIHYS  142 (302)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC-----SS---CEEEEEEESCGGGT
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc-----CC---CeeEEEECchHHHh
Confidence            4689999999999999999887766421     267777776    2 11221 11     35   89999874321   


Q ss_pred             ---cchHHHHHHHhhcccCCeEEEEeC
Q 044253           77 ---DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        77 ---~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                         .+....+..+.++|+|||++++..
T Consensus       143 ~~~~~~~~~l~~~~r~LkpGG~~i~~~  169 (302)
T 2vdw_A          143 FHPRHYATVMNNLSELTASGGKVLITT  169 (302)
T ss_dssp             CSTTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence               234678899999999999998754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.40  E-value=3.2e-08  Score=75.05  Aligned_cols=73  Identities=10%  Similarity=0.066  Sum_probs=59.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+|++||+|+++++.|++++...  ++ .++++++.+|+.+++          +   +||+|++|...  ...+++.+.+
T Consensus        95 ~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------~---~fD~Ii~d~~d--p~~~~~~~~~  159 (262)
T 2cmg_A           95 THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------K---KYDLIFCLQEP--DIHRIDGLKR  159 (262)
T ss_dssp             CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------C---CEEEEEESSCC--CHHHHHHHHT
T ss_pred             CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------h---hCCEEEECCCC--hHHHHHHHHH
Confidence            68999999999999999887431  22 358999999998753          2   79999999743  3458899999


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .|+|||++++.
T Consensus       160 ~L~pgG~lv~~  170 (262)
T 2cmg_A          160 MLKEDGVFISV  170 (262)
T ss_dssp             TEEEEEEEEEE
T ss_pred             hcCCCcEEEEE
Confidence            99999999985

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.39  E-value=3.8e-07  Score=65.64  Aligned_cols=83  Identities=10%  Similarity=0.039  Sum_probs=62.2

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNYR   83 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~~   83 (139)
                      ..+..+.+|+++|+|+.+++.|+++       .+++++.+|+.........   ...   +||+|++...  ..+...++
T Consensus        69 ~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~---~~~---~fD~v~~~~~l~~~~~~~~l  135 (227)
T 3e8s_A           69 ALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVP---VGK---DYDLICANFALLHQDIIELL  135 (227)
T ss_dssp             HHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSC---CCC---CEEEEEEESCCCSSCCHHHH
T ss_pred             HHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccc---cCC---CccEEEECchhhhhhHHHHH
Confidence            3344477899999999999999987       3578899998876321110   023   6999998653  34567889


Q ss_pred             HHHhhcccCCeEEEEeCC
Q 044253           84 ETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~~  101 (139)
                      +.+.++|+|||++++...
T Consensus       136 ~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          136 SAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             HHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHhCCCeEEEEEec
Confidence            999999999999998654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.39  E-value=5.7e-07  Score=62.48  Aligned_cols=80  Identities=11%  Similarity=0.004  Sum_probs=61.1

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRN   81 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~   81 (139)
                      ...+....+++++|+|+++++.|+++      .++++++++|    ++ ..     .+   +||+|++....   .+...
T Consensus        33 ~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d----~~-~~-----~~---~~D~v~~~~~l~~~~~~~~   93 (170)
T 3i9f_A           33 KYLLEFATKLYCIDINVIALKEVKEK------FDSVITLSDP----KE-IP-----DN---SVDFILFANSFHDMDDKQH   93 (170)
T ss_dssp             HHHHTTEEEEEEECSCHHHHHHHHHH------CTTSEEESSG----GG-SC-----TT---CEEEEEEESCSTTCSCHHH
T ss_pred             HHHHhhcCeEEEEeCCHHHHHHHHHh------CCCcEEEeCC----CC-CC-----CC---ceEEEEEccchhcccCHHH
Confidence            33444445899999999999999988      2579999998    22 11     35   89999987532   34577


Q ss_pred             HHHHHhhcccCCeEEEEeCCCC
Q 044253           82 YRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      +++.+.+.|+|||.+++.+...
T Consensus        94 ~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           94 VISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECS
T ss_pred             HHHHHHHhcCCCCEEEEEEcCc
Confidence            8899999999999999875443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.38  E-value=8e-08  Score=69.48  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---hH--H
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---YR--N   81 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---~~--~   81 (139)
                      .+..+.+++++|+|+++++.|++++.     .+++++++|+.+. + .      .+   +||+|++......   ..  .
T Consensus        63 l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~l~~~~~~~~~~  126 (220)
T 3hnr_A           63 LLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSF-E-V------PT---SIDTIVSTYAFHHLTDDEKNV  126 (220)
T ss_dssp             HHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSC-C-C------CS---CCSEEEEESCGGGSCHHHHHH
T ss_pred             HHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhc-C-C------CC---CeEEEEECcchhcCChHHHHH
Confidence            34457799999999999999998864     4789999999764 1 1      24   8999999764322   22  2


Q ss_pred             HHHHHhhcccCCeEEEEeCCCC
Q 044253           82 YRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      +++.+.+.|+|||.+++.+..+
T Consensus       127 ~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          127 AIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             HHHHHHHHSCTTCEEEEEEECB
T ss_pred             HHHHHHHhcCCCCEEEEEeccc
Confidence            7888999999999999875444

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.38  E-value=3.2e-07  Score=71.52  Aligned_cols=75  Identities=21%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY------------   79 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~------------   79 (139)
                      .+++++|+|+.+++.|+.|+...|+  +++++++|++...  .      ..   +||+|+++++...+            
T Consensus       160 ~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~--~------~~---~fD~Ii~NPPfg~~~~~~~~~~~~~~  226 (344)
T 2f8l_A          160 VHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL--L------VD---PVDVVISDLPVGYYPDDENAKTFELC  226 (344)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC--C------CC---CEEEEEEECCCSEESCHHHHTTSTTC
T ss_pred             ceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc--c------cC---CccEEEECCCCCCcCchhhhhhcccc
Confidence            6899999999999999999998887  5899999987532  1      35   89999999873211            


Q ss_pred             ---------HHHHHHHhhcccCCeEEEEe
Q 044253           80 ---------RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        80 ---------~~~~~~~~~lL~~gG~ii~~   99 (139)
                               ..+++.+.+.|++||++++-
T Consensus       227 ~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          227 REEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             CSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence                     24788888999999998653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.38  E-value=3.5e-07  Score=65.66  Aligned_cols=79  Identities=13%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRN   81 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~   81 (139)
                      .+..+.+|+++|+|+.+++.|++    .+. .+++++++|+.+.   ..     .+   +||+|++......     ...
T Consensus        64 l~~~~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~---~~-----~~---~~D~v~~~~~l~~~~~~~~~~  127 (218)
T 3ou2_A           64 LSGLADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW---TP-----DR---QWDAVFFAHWLAHVPDDRFEA  127 (218)
T ss_dssp             HHHHSSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC---CC-----SS---CEEEEEEESCGGGSCHHHHHH
T ss_pred             HHhcCCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC---CC-----CC---ceeEEEEechhhcCCHHHHHH
Confidence            34447799999999999999998    454 5799999999775   11     46   8999999763222     356


Q ss_pred             HHHHHhhcccCCeEEEEeCC
Q 044253           82 YRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~  101 (139)
                      +++.+.+.|+|||.+++...
T Consensus       128 ~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          128 FWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             HHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEEeC
Confidence            78889999999999988654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=98.37  E-value=8.6e-07  Score=67.26  Aligned_cols=66  Identities=15%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             HcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHHHHHhhcccCCeEEEEeCCC
Q 044253           33 KVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        33 ~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      ..|. .++++++.|++.+.++.+..+.. ..   +||+|++|++. ..+..+++.+.++|++||+|++||..
T Consensus       152 ~~g~~~~~i~li~G~~~dTL~~~l~~~~-~~---~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          152 FFGHVTQRSVLVEGDVRETVPRYLAENP-QT---VIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TTTTSCCSEEEEESCHHHHHHHHHHHCT-TC---CEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hcCCCCCcEEEEEecHHHHHHHHHHhCC-CC---ceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4565 48999999999999987643211 24   69999999985 34556799999999999999999974

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.37  E-value=1.4e-07  Score=71.62  Aligned_cols=64  Identities=8%  Similarity=0.015  Sum_probs=51.4

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcC--------CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVE--------VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g--------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      ++..+..+++|++||+++.++..++++++...        +.++++++++|+.++++.+      .+   +||+||+||.
T Consensus       103 al~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~------~~---~fDvV~lDP~  173 (258)
T 2oyr_A          103 AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TP---RPQVVYLDPM  173 (258)
T ss_dssp             HHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC------SS---CCSEEEECCC
T ss_pred             HHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC------cc---cCCEEEEcCC
Confidence            45566668899999999999999988876542        3357999999999987654      35   7999999985


Q ss_pred             C
Q 044253           76 K   76 (139)
Q Consensus        76 ~   76 (139)
                      .
T Consensus       174 y  174 (258)
T 2oyr_A          174 F  174 (258)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.36  E-value=4.4e-07  Score=66.99  Aligned_cols=73  Identities=15%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      +.+|+++|+|+++++.|+++      ..+++++++|+.+..  .      ..   +||+|++....   .+....+..+.
T Consensus        57 ~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~l~~~~  119 (259)
T 2p35_A           57 VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P------AQ---KADLLYANAVFQWVPDHLAVLSQLM  119 (259)
T ss_dssp             TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C------SS---CEEEEEEESCGGGSTTHHHHHHHHG
T ss_pred             CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c------cC---CcCEEEEeCchhhCCCHHHHHHHHH
Confidence            67999999999999999987      247899999987642  1      46   89999997642   34577889999


Q ss_pred             hcccCCeEEEEeC
Q 044253           88 TLFKVGGIVIYDN  100 (139)
Q Consensus        88 ~lL~~gG~ii~~~  100 (139)
                      +.|+|||++++..
T Consensus       120 ~~L~pgG~l~~~~  132 (259)
T 2p35_A          120 DQLESGGVLAVQM  132 (259)
T ss_dssp             GGEEEEEEEEEEE
T ss_pred             HhcCCCeEEEEEe
Confidence            9999999998853

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.36  E-value=7.1e-07  Score=65.17  Aligned_cols=78  Identities=17%  Similarity=0.075  Sum_probs=56.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-HHHHHHHhhcc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-RNYRETLMTLF   90 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-~~~~~~~~~lL   90 (139)
                      .+|+++|+|+++++.+.+..+..   .++.++++|+.........    .+   +||+|+++...... ..+++.+.+.|
T Consensus        82 ~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~----~~---~fD~V~~~~~~~~~~~~~l~~~~r~L  151 (210)
T 1nt2_A           82 GIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGI----VE---KVDLIYQDIAQKNQIEILKANAEFFL  151 (210)
T ss_dssp             SEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTT----CC---CEEEEEECCCSTTHHHHHHHHHHHHE
T ss_pred             CEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhccc----cc---ceeEEEEeccChhHHHHHHHHHHHHh
Confidence            68999999999988777766543   3689999998753110000    24   89999999644332 23478889999


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +|||.+++.
T Consensus       152 kpgG~l~i~  160 (210)
T 1nt2_A          152 KEKGEVVIM  160 (210)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCCEEEEE
Confidence            999999986

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.35  E-value=1.2e-07  Score=70.53  Aligned_cols=77  Identities=9%  Similarity=-0.041  Sum_probs=59.9

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCc------ch
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKD------NY   79 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~------~~   79 (139)
                      .+..+.+|+++|+|+++++.|++++.      +++++++|+.+. + .      .+   +||+|++.. ...      ..
T Consensus        68 l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~~l~~~~~~~~~  130 (263)
T 3pfg_A           68 LADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDF-S-L------GR---RFSAVTCMFSSIGHLAGQAEL  130 (263)
T ss_dssp             HTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTC-C-C------SC---CEEEEEECTTGGGGSCHHHHH
T ss_pred             HHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHC-C-c------cC---CcCEEEEcCchhhhcCCHHHH
Confidence            34446689999999999999998753      689999999774 1 1      25   899999975 221      33


Q ss_pred             HHHHHHHhhcccCCeEEEEeC
Q 044253           80 RNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ..+++.+.++|+|||+++++.
T Consensus       131 ~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          131 DAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             HHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHHHhcCCCcEEEEEe
Confidence            456888889999999999974

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.34  E-value=1.4e-07  Score=71.32  Aligned_cols=77  Identities=14%  Similarity=0.118  Sum_probs=59.1

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNY   82 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~   82 (139)
                      ...+..+.+|++||+|++|++.|++       ..+++++++|+.+. + +.     ++   +||+|++-..  ..+....
T Consensus        55 ~~l~~~~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~-~-~~-----~~---sfD~v~~~~~~h~~~~~~~  117 (257)
T 4hg2_A           55 LGLAEFFERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDT-G-LP-----PA---SVDVAIAAQAMHWFDLDRF  117 (257)
T ss_dssp             HHHHTTCSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCC-C-CC-----SS---CEEEEEECSCCTTCCHHHH
T ss_pred             HHHHHhCCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhh-c-cc-----CC---cccEEEEeeehhHhhHHHH
Confidence            3445567799999999999988764       24799999998764 2 21     46   8999998653  2245678


Q ss_pred             HHHHhhcccCCeEEEE
Q 044253           83 RETLMTLFKVGGIVIY   98 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~   98 (139)
                      +..+.++|+|||++++
T Consensus       118 ~~e~~rvLkpgG~l~~  133 (257)
T 4hg2_A          118 WAELRRVARPGAVFAA  133 (257)
T ss_dssp             HHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHcCCCCEEEE
Confidence            8999999999999976

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.34  E-value=8.6e-07  Score=63.56  Aligned_cols=77  Identities=6%  Similarity=0.072  Sum_probs=59.2

Q ss_pred             hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c
Q 044253            5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N   78 (139)
Q Consensus         5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~   78 (139)
                      +..+..+ .+|+++|+|+.+++.|++|+...++  +++++++|+.+.          ..   +||+|++|++..     .
T Consensus        65 ~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~----------~~---~~D~v~~~~p~~~~~~~~  129 (207)
T 1wy7_A           65 YGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF----------NS---RVDIVIMNPPFGSQRKHA  129 (207)
T ss_dssp             HHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC----------CC---CCSEEEECCCCSSSSTTT
T ss_pred             HHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc----------CC---CCCEEEEcCCCccccCCc
Confidence            3444443 3699999999999999999998887  699999999763          25   899999998632     2


Q ss_pred             hHHHHHHHhhcccCCeEEEE
Q 044253           79 YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~   98 (139)
                      ...+++.+.+.+  |+++++
T Consensus       130 ~~~~l~~~~~~l--~~~~~~  147 (207)
T 1wy7_A          130 DRPFLLKAFEIS--DVVYSI  147 (207)
T ss_dssp             THHHHHHHHHHC--SEEEEE
T ss_pred             hHHHHHHHHHhc--CcEEEE
Confidence            346777777777  665554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.34  E-value=2.7e-07  Score=66.43  Aligned_cols=77  Identities=12%  Similarity=-0.040  Sum_probs=60.3

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYR   80 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~   80 (139)
                      ..+..+.+|+++|+|+++++.|++++       +++++++|+....  .      .+   +||+|++.....     ...
T Consensus        60 ~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~  121 (211)
T 3e23_A           60 AMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--A------ID---AYDAVWAHACLLHVPRDELA  121 (211)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--C------CS---CEEEEEECSCGGGSCHHHHH
T ss_pred             HHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--C------CC---cEEEEEecCchhhcCHHHHH
Confidence            34445679999999999999999987       3677888887642  1      46   899999976322     445


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+++.+.+.|+|||++++..
T Consensus       122 ~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          122 DVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEEE
Confidence            68889999999999999863

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.33  E-value=1.3e-06  Score=67.63  Aligned_cols=83  Identities=13%  Similarity=0.080  Sum_probs=60.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-----------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-----------   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-----------   79 (139)
                      ..+|+++|+++++++.+++|++.+|+ .+++++++|+.+.......    ..   +||.|++|++....           
T Consensus       127 ~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~----~~---~fD~Vl~D~PcSg~G~~~r~pd~~~  198 (309)
T 2b9e_A          127 QGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPR----YH---EVHYILLDPSCSGSGMPSRQLEEPG  198 (309)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGG----GT---TEEEEEECCCCCC------------
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccc----cC---CCCEEEEcCCcCCCCCCccCCChhh
Confidence            36899999999999999999999998 4799999999875321100    14   79999999764210           


Q ss_pred             ----------------HHHHHHHhhcccCCeEEEEeCCC
Q 044253           80 ----------------RNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        80 ----------------~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                                      ..+++.+.++++ ||++++....
T Consensus       199 ~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          199 AGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             hccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence                            123555556776 9998875443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.33  E-value=2.2e-07  Score=66.47  Aligned_cols=75  Identities=11%  Similarity=0.053  Sum_probs=58.5

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----------------
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----------------   76 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----------------   76 (139)
                      +|+++|+|+.+++.|++++..   ..+++++++|+.+. + +.     .+   +||+|++....                
T Consensus        67 ~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~~~~~~~~~~~~~~~~~~  133 (215)
T 2pxx_A           67 NVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-FP-----SA---SFDVVLEKGTLDALLAGERDPWTVSSE  133 (215)
T ss_dssp             CEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-SC-----SS---CEEEEEEESHHHHHTTTCSCTTSCCHH
T ss_pred             cEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-CC-----CC---cccEEEECcchhhhccccccccccccc
Confidence            899999999999999998764   24799999998764 1 21     35   89999986421                


Q ss_pred             --cchHHHHHHHhhcccCCeEEEEeC
Q 044253           77 --DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        77 --~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                        .....+++.+.++|+|||.+++..
T Consensus       134 ~~~~~~~~l~~~~~~LkpgG~li~~~  159 (215)
T 2pxx_A          134 GVHTVDQVLSEVSRVLVPGGRFISMT  159 (215)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence              123567888889999999998754

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.33  E-value=7.1e-07  Score=66.62  Aligned_cols=84  Identities=8%  Similarity=0.003  Sum_probs=61.4

Q ss_pred             cceeEEeCCcc------HHHHHHHHHHHcCCCCcEEEEeCC-hHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHH
Q 044253           12 YFIVAIDVSRE------SSETGLPIIKKVEVDLKINLMESR-ALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRN   81 (139)
Q Consensus        12 ~~v~~vD~s~~------~~~~Ar~n~~~~g~~~~i~~~~~d-a~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~   81 (139)
                      .+|+++|+|++      +++.|++++...++.++++++++| .......+.     .+   +||+|++....   .....
T Consensus        69 ~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~---~fD~v~~~~~l~~~~~~~~  140 (275)
T 3bkx_A           69 GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA-----DQ---HFDRVVLAHSLWYFASANA  140 (275)
T ss_dssp             CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT-----TC---CCSEEEEESCGGGSSCHHH
T ss_pred             CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC-----CC---CEEEEEEccchhhCCCHHH
Confidence            78999999997      999999999998887789999998 322100111     35   89999987642   23344


Q ss_pred             HHHHHhhcccCCeEEEEeCCCC
Q 044253           82 YRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      +++.+..++++||++++.+...
T Consensus       141 ~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          141 LALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             HHHHHHHHTTTCSEEEEEEECS
T ss_pred             HHHHHHHHhCCCCEEEEEEecC
Confidence            5666666777799999865544

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.32  E-value=5e-07  Score=66.51  Aligned_cols=77  Identities=6%  Similarity=0.064  Sum_probs=60.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~~   86 (139)
                      .+|+++|+|+.+++.|++++...   .+++++++|+... + +.     .+   +||+|++.....     ....+++.+
T Consensus       117 ~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~~~l~~~  183 (254)
T 1xtp_A          117 ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T-LP-----PN---TYDLIVIQWTAIYLTDADFVKFFKHC  183 (254)
T ss_dssp             SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C-CC-----SS---CEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C-CC-----CC---CeEEEEEcchhhhCCHHHHHHHHHHH
Confidence            46999999999999999987654   5799999998764 2 21     35   899999875422     345678888


Q ss_pred             hhcccCCeEEEEeCC
Q 044253           87 MTLFKVGGIVIYDNT  101 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~  101 (139)
                      .+.|+|||++++...
T Consensus       184 ~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          184 QQALTPNGYIFFKEN  198 (254)
T ss_dssp             HHHEEEEEEEEEEEE
T ss_pred             HHhcCCCeEEEEEec
Confidence            999999999988653

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.31  E-value=3.1e-07  Score=68.89  Aligned_cols=85  Identities=20%  Similarity=0.128  Sum_probs=58.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCC----------------------------CCcEE-EEeCChHHHHHhhHHhhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEV----------------------------DLKIN-LMESRALPALDQLLKDEKIHF   62 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~----------------------------~~~i~-~~~~da~~~l~~~~~~~~~~~   62 (139)
                      .+|+++|+|+.+++.|+++++....                            ..+++ ++++|+.+..+ +...  ...
T Consensus        79 ~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~-~~~~--~~~  155 (263)
T 2a14_A           79 QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNP-LAPA--VLP  155 (263)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSST-TTTC--CCC
T ss_pred             cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCC-CCcc--ccC
Confidence            4799999999999999998865421                            01244 88888876321 1000  024


Q ss_pred             CCCceeEEEEcCC-------CcchHHHHHHHhhcccCCeEEEEeCCC
Q 044253           63 FFENFDYAFVDAH-------KDNYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        63 ~~~~fD~If~D~~-------~~~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                         +||+|++-..       ..++...+..+.++|||||++++....
T Consensus       156 ---~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          156 ---LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             ---CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             ---CCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence               8999998632       134456788888999999999987543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.31  E-value=9.3e-07  Score=67.93  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~~   85 (139)
                      ..+++++|++ .+++.|++++...++.++++++.+|+.+.  .+      ..   .||+|++....     .....+++.
T Consensus       189 ~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~---~~D~v~~~~~l~~~~~~~~~~~l~~  256 (335)
T 2r3s_A          189 NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GN---DYDLVLLPNFLHHFDVATCEQLLRK  256 (335)
T ss_dssp             TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CC---CCcEEEEcchhccCCHHHHHHHHHH
Confidence            5689999999 99999999999999878899999998763  22      24   69999985432     223567888


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.|+|||.+++.+...
T Consensus       257 ~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          257 IKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             HHHHEEEEEEEEEEECCC
T ss_pred             HHHhCCCCcEEEEEeecC
Confidence            899999999887765544

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.31  E-value=6.4e-07  Score=70.32  Aligned_cols=85  Identities=13%  Similarity=0.058  Sum_probs=65.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~   84 (139)
                      ...+++++|+ +++++.|++++...++.++++++.+|+.+.-..+      .+   +||+|++-....     ....+++
T Consensus       202 p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p~---~~D~v~~~~vlh~~~~~~~~~~l~  271 (363)
T 3dp7_A          202 KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------PT---GFDAVWMSQFLDCFSEEEVISILT  271 (363)
T ss_dssp             TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------CC---CCSEEEEESCSTTSCHHHHHHHHH
T ss_pred             CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------CC---CcCEEEEechhhhCCHHHHHHHHH
Confidence            4668999999 9999999999998888789999999987530001      24   799999854322     2245788


Q ss_pred             HHhhcccCCeEEEEeCCCCC
Q 044253           85 TLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~~  104 (139)
                      .+.+.|+|||.+++.+..+.
T Consensus       272 ~~~~~L~pgG~l~i~e~~~~  291 (363)
T 3dp7_A          272 RVAQSIGKDSKVYIMETLWD  291 (363)
T ss_dssp             HHHHHCCTTCEEEEEECCTT
T ss_pred             HHHHhcCCCcEEEEEeeccC
Confidence            89999999999988665553

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.30  E-value=1.1e-07  Score=69.73  Aligned_cols=75  Identities=13%  Similarity=-0.087  Sum_probs=57.5

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      ..+..+.+|+++|+|+.+++.|+++      ..+++++++|+.+.++...     ++   +||+|++..   .....+..
T Consensus        65 ~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~-----~~---~fD~v~~~~---~~~~~l~~  127 (226)
T 3m33_A           65 RFGPQAARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGL-----GA---PFGLIVSRR---GPTSVILR  127 (226)
T ss_dssp             HHGGGSSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTC-----CC---CEEEEEEES---CCSGGGGG
T ss_pred             HHHHcCCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcC-----CC---CEEEEEeCC---CHHHHHHH
Confidence            3444467999999999999999998      2479999999964433100     25   899999974   34456778


Q ss_pred             HhhcccCCeEEE
Q 044253           86 LMTLFKVGGIVI   97 (139)
Q Consensus        86 ~~~lL~~gG~ii   97 (139)
                      +.++|+|||+++
T Consensus       128 ~~~~LkpgG~l~  139 (226)
T 3m33_A          128 LPELAAPDAHFL  139 (226)
T ss_dssp             HHHHEEEEEEEE
T ss_pred             HHHHcCCCcEEE
Confidence            889999999999

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.30  E-value=2.4e-06  Score=64.62  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             cceeEEeCCc--------------cHHHHHHHHHHHcC----------C---CCcEEEEeCChHHHHHhhHHhhhcccCC
Q 044253           12 YFIVAIDVSR--------------ESSETGLPIIKKVE----------V---DLKINLMESRALPALDQLLKDEKIHFFF   64 (139)
Q Consensus        12 ~~v~~vD~s~--------------~~~~~Ar~n~~~~g----------~---~~~i~~~~~da~~~l~~~~~~~~~~~~~   64 (139)
                      .+++++|.++              +....|+++++.+.          +   ..+++++.||+.+.++.+....  ..  
T Consensus        97 l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~--~~--  172 (257)
T 2qy6_A           97 LHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSL--NQ--  172 (257)
T ss_dssp             EEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGG--TT--
T ss_pred             eEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchhheeccCCceEEEEEECcHHHHHhhccccc--CC--
Confidence            5899999997              45557888877521          2   1468899999999887652110  13  


Q ss_pred             CceeEEEEcC--CCcc----hHHHHHHHhhcccCCeEEEE
Q 044253           65 ENFDYAFVDA--HKDN----YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        65 ~~fD~If~D~--~~~~----~~~~~~~~~~lL~~gG~ii~   98 (139)
                       +||+||+|+  ++.+    +..+++.+.++|+|||+++.
T Consensus       173 -~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          173 -KVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             -CEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             -eEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence             699999997  3222    56789999999999999986

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.30  E-value=3.3e-07  Score=67.01  Aligned_cols=82  Identities=10%  Similarity=0.044  Sum_probs=63.3

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNY   82 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~   82 (139)
                      ..+..+.+|+++|+|+.+++.|+++.    ...+++++++|+.+. + +.     .+   +||+|++...   ..+...+
T Consensus        70 ~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~  135 (242)
T 3l8d_A           70 KLSRTGYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSL-P-FE-----NE---QFEAIMAINSLEWTEEPLRA  135 (242)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBC-S-SC-----TT---CEEEEEEESCTTSSSCHHHH
T ss_pred             HHHHcCCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcC-C-CC-----CC---CccEEEEcChHhhccCHHHH
Confidence            34445779999999999999999874    235799999998764 2 11     35   8999998653   2355678


Q ss_pred             HHHHhhcccCCeEEEEeCC
Q 044253           83 RETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~  101 (139)
                      ++.+.+.|+|||++++...
T Consensus       136 l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          136 LNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             HHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHhCCCeEEEEEEc
Confidence            9999999999999988653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.28  E-value=1.6e-06  Score=67.26  Aligned_cols=84  Identities=13%  Similarity=0.080  Sum_probs=66.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~   85 (139)
                      ..+++++|+ +++++.|++++...++.++++++.+|+.+.....      ..   +||+|++.....     ....+++.
T Consensus       203 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~---~~D~v~~~~vlh~~~~~~~~~~l~~  272 (352)
T 3mcz_A          203 QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GG---AADVVMLNDCLHYFDAREAREVIGH  272 (352)
T ss_dssp             TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TC---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CC---CccEEEEecccccCCHHHHHHHHHH
Confidence            568999999 8999999999999999889999999987642112      35   799999865322     23567888


Q ss_pred             HhhcccCCeEEEEeCCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~~  104 (139)
                      +.+.|+|||.+++.+..+.
T Consensus       273 ~~~~L~pgG~l~i~e~~~~  291 (352)
T 3mcz_A          273 AAGLVKPGGALLILTMTMN  291 (352)
T ss_dssp             HHHTEEEEEEEEEEEECCC
T ss_pred             HHHHcCCCCEEEEEEeccC
Confidence            8999999999988765553

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.28  E-value=9.2e-07  Score=64.99  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=62.3

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYR   80 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~   80 (139)
                      ..+..+.+|+++|+|+.+++.|++++   .. .+++++++|+.+.-....  .....   +||+|++....     ....
T Consensus        73 ~la~~~~~v~gvD~s~~~~~~a~~~~---~~-~~~~~~~~d~~~~~~~~~--~~~~~---~~d~v~~~~~~~~~~~~~~~  143 (245)
T 3ggd_A           73 FLSQFFPRVIGLDVSKSALEIAAKEN---TA-ANISYRLLDGLVPEQAAQ--IHSEI---GDANIYMRTGFHHIPVEKRE  143 (245)
T ss_dssp             HHHHHSSCEEEEESCHHHHHHHHHHS---CC-TTEEEEECCTTCHHHHHH--HHHHH---CSCEEEEESSSTTSCGGGHH
T ss_pred             HHHHhCCCEEEEECCHHHHHHHHHhC---cc-cCceEEECcccccccccc--ccccc---CccEEEEcchhhcCCHHHHH
Confidence            34455568999999999999999987   22 479999999987522110  00023   59999987532     2456


Q ss_pred             HHHHHHhhcccCCeEEEEeCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      .+++.+.+.|+|||++++-+.
T Consensus       144 ~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          144 LLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             HHHHHHHHHHTTTCEEEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEEeC
Confidence            789999999999998766544

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.28  E-value=4e-07  Score=66.48  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             hhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHH
Q 044253            8 TFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYR   83 (139)
Q Consensus         8 ~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~   83 (139)
                      +..+. +|+++|+|+++++.|+++...    .+++++++|+.+. + +.     ..   +||+|++....   .+....+
T Consensus        62 ~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l  127 (243)
T 3bkw_A           62 HEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKL-H-LP-----QD---SFDLAYSSLALHYVEDVARLF  127 (243)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGC-C-CC-----TT---CEEEEEEESCGGGCSCHHHHH
T ss_pred             HHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhc-c-CC-----CC---CceEEEEeccccccchHHHHH
Confidence            33455 899999999999999987643    3699999999764 2 21     35   89999987532   2457788


Q ss_pred             HHHhhcccCCeEEEEeC
Q 044253           84 ETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~  100 (139)
                      +.+.++|+|||.+++..
T Consensus       128 ~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          128 RTVHQALSPGGHFVFST  144 (243)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhcCcCcEEEEEe
Confidence            99999999999998853

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.28  E-value=1.5e-06  Score=67.12  Aligned_cols=83  Identities=8%  Similarity=-0.014  Sum_probs=66.0

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~   84 (139)
                      ...+++++|+ +++++.|++++...++.++++++.+|+.+   .+      ..   +||+|++-....     ....+++
T Consensus       192 p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~------p~---~~D~v~~~~vlh~~~~~~~~~~l~  258 (332)
T 3i53_A          192 EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD---PL------PA---GAGGYVLSAVLHDWDDLSAVAILR  258 (332)
T ss_dssp             TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---CC------CC---SCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC---CC------CC---CCcEEEEehhhccCCHHHHHHHHH
Confidence            4568999999 99999999999999998899999999973   22      24   799999864322     1356788


Q ss_pred             HHhhcccCCeEEEEeCCCCCc
Q 044253           85 TLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~~~  105 (139)
                      .+.+.|+|||.+++.+.....
T Consensus       259 ~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          259 RCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             HHHHHHTTTCEEEEEECCCC-
T ss_pred             HHHHhcCCCCEEEEEeecCCC
Confidence            899999999999887665543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.27  E-value=7.2e-07  Score=62.62  Aligned_cols=78  Identities=6%  Similarity=-0.038  Sum_probs=59.5

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------cchH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------DNYR   80 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------~~~~   80 (139)
                      .+..+.+++++|+|+.+++.+++++      .+++++++|+.+. + +.     .+   +||+|++.+..      ....
T Consensus        64 l~~~~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~-~-~~-----~~---~~D~i~~~~~~~~~~~~~~~~  127 (195)
T 3cgg_A           64 LSKQGHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVD-Q-IS-----ET---DFDLIVSAGNVMGFLAEDGRE  127 (195)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTS-C-CC-----CC---CEEEEEECCCCGGGSCHHHHH
T ss_pred             HHHCCCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccC-C-CC-----CC---ceeEEEECCcHHhhcChHHHH
Confidence            3444678999999999999999876      2489999998764 1 21     35   89999998432      1235


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+++.+.++|+|||.+++..
T Consensus       128 ~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          128 PALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEe
Confidence            67888889999999999853

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.26  E-value=1.9e-06  Score=64.35  Aligned_cols=79  Identities=14%  Similarity=0.032  Sum_probs=54.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH-HHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE-TLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~-~~~~l   89 (139)
                      ..+|+++|+++.+++...+..+..   .+++++++|+..... ...-   .+   +||+||+|.........+. .+.+.
T Consensus       101 ~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~-~~~~---~~---~~D~I~~d~a~~~~~~il~~~~~~~  170 (232)
T 3id6_C          101 NGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQS-YKSV---VE---NVDVLYVDIAQPDQTDIAIYNAKFF  170 (232)
T ss_dssp             TSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGG-TTTT---CC---CEEEEEECCCCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchh-hhcc---cc---ceEEEEecCCChhHHHHHHHHHHHh
Confidence            348999999999976655544433   479999999875311 1000   25   8999999987655444444 44459


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+|||.+++.
T Consensus       171 LkpGG~lvis  180 (232)
T 3id6_C          171 LKVNGDMLLV  180 (232)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9999999975

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.26  E-value=7.2e-07  Score=67.05  Aligned_cols=77  Identities=12%  Similarity=0.018  Sum_probs=61.3

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYR   83 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~   83 (139)
                      .+..+.+|+++|+|+++++.|++++      .+++++++|+... + .      .+   +||+|++....   .+....+
T Consensus        75 l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~l~~~~d~~~~l  137 (279)
T 3ccf_A           75 IAQSGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-V------DK---PLDAVFSNAMLHWVKEPEAAI  137 (279)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-C------SS---CEEEEEEESCGGGCSCHHHHH
T ss_pred             HHhCCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-c------CC---CcCEEEEcchhhhCcCHHHHH
Confidence            3345679999999999999999875      4688999998763 2 1      35   89999987642   3557789


Q ss_pred             HHHhhcccCCeEEEEeC
Q 044253           84 ETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~  100 (139)
                      ..+.+.|+|||++++..
T Consensus       138 ~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          138 ASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEEe
Confidence            99999999999999853

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.25  E-value=2e-06  Score=67.57  Aligned_cols=82  Identities=6%  Similarity=-0.013  Sum_probs=65.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~   84 (139)
                      ...+++++|+ +++++.|++++...++.++++++.+|+.+   .+      ..   +||+|++.....+     ...+++
T Consensus       225 p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~------p~---~~D~v~~~~vlh~~~d~~~~~~L~  291 (369)
T 3gwz_A          225 PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE---TI------PD---GADVYLIKHVLHDWDDDDVVRILR  291 (369)
T ss_dssp             TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT---CC------CS---SCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC---CC------CC---CceEEEhhhhhccCCHHHHHHHHH
Confidence            3568999999 99999999999999988899999999973   22      24   7999998653222     235788


Q ss_pred             HHhhcccCCeEEEEeCCCCC
Q 044253           85 TLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~~  104 (139)
                      .+.+.|+|||.+++.+....
T Consensus       292 ~~~~~L~pgG~l~i~e~~~~  311 (369)
T 3gwz_A          292 RIATAMKPDSRLLVIDNLID  311 (369)
T ss_dssp             HHHTTCCTTCEEEEEEEBCC
T ss_pred             HHHHHcCCCCEEEEEEeccC
Confidence            89999999999988665543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.22  E-value=1.7e-06  Score=66.21  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcC------CCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCc-----
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVE------VDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKD-----   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g------~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~-----   77 (139)
                      ..+++++|+|+++++.|+++....+      ...+++++++|+....  ..+...   ..   +||+|++.....     
T Consensus        57 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~---~fD~V~~~~~l~~~~~~  130 (313)
T 3bgv_A           57 INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP---QM---CFDICSCQFVCHYSFES  130 (313)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST---TC---CEEEEEEETCGGGGGGS
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC---CC---CEEEEEEecchhhccCC
Confidence            5689999999999999999987652      2347999999998641  001100   24   899999875431     


Q ss_pred             --chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 --NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 --~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                        ....++..+.+.|+|||++++..
T Consensus       131 ~~~~~~~l~~~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          131 YEQADMMLRNACERLSPGGYFIGTT  155 (313)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEec
Confidence              23467888999999999998753

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.22  E-value=1e-06  Score=67.90  Aligned_cols=80  Identities=11%  Similarity=-0.019  Sum_probs=64.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~   85 (139)
                      ..+++++|+ +.+++.|++++...++.++++++.+|+.+.   +      ..   +||+|++.....+     ...+++.
T Consensus       191 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~---~~D~v~~~~vl~~~~~~~~~~~l~~  257 (334)
T 2ip2_A          191 SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PS---NGDIYLLSRIIGDLDEAASLRLLGN  257 (334)
T ss_dssp             TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CS---SCSEEEEESCGGGCCHHHHHHHHHH
T ss_pred             CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CC---CCCEEEEchhccCCCHHHHHHHHHH
Confidence            568999999 999999999998888777899999998762   2      34   7999998654322     2367888


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.|+|||++++.+...
T Consensus       258 ~~~~L~pgG~l~i~e~~~  275 (334)
T 2ip2_A          258 CREAMAGDGRVVVIERTI  275 (334)
T ss_dssp             HHHHSCTTCEEEEEECCB
T ss_pred             HHHhcCCCCEEEEEEecc
Confidence            889999999998876654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.22  E-value=2.5e-06  Score=66.40  Aligned_cols=79  Identities=10%  Similarity=0.086  Sum_probs=63.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~   85 (139)
                      ..+++++|+ +++++.|++++...++.++++++.+|+.+.   +      ..   .||+|++.....+     ...+++.
T Consensus       207 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~---~~D~v~~~~vl~~~~~~~~~~~l~~  273 (360)
T 1tw3_A          207 HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---L------PR---KADAIILSFVLLNWPDHDAVRILTR  273 (360)
T ss_dssp             TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC---C------CC---CccEEEEcccccCCCHHHHHHHHHH
Confidence            457899999 999999999999999877999999998752   2      24   6999998653322     2467888


Q ss_pred             HhhcccCCeEEEEeCCC
Q 044253           86 LMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~  102 (139)
                      +.+.|+|||.+++.+..
T Consensus       274 ~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          274 CAEALEPGGRILIHERD  290 (360)
T ss_dssp             HHHTEEEEEEEEEEECC
T ss_pred             HHHhcCCCcEEEEEEEe
Confidence            99999999998876554

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.21  E-value=4.6e-06  Score=63.24  Aligned_cols=86  Identities=7%  Similarity=-0.019  Sum_probs=62.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH---Hhh--HHhhhcccCCCceeEEEEcCCCc-----chH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL---DQL--LKDEKIHFFFENFDYAFVDAHKD-----NYR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l---~~~--~~~~~~~~~~~~fD~If~D~~~~-----~~~   80 (139)
                      +.+|+++|+|+.+++.|++++..   .++++++++|+.+.-   ...  ....+ ..   +||+|++.....     ...
T Consensus       104 ~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~d-~~---~~d~v~~~~vlh~~~d~~~~  176 (274)
T 2qe6_A          104 DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMID-FS---RPAAIMLVGMLHYLSPDVVD  176 (274)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHCC-TT---SCCEEEETTTGGGSCTTTHH
T ss_pred             CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccCC-CC---CCEEEEEechhhhCCcHHHH
Confidence            57899999999999999998843   357999999997531   100  00000 14   799999875321     356


Q ss_pred             HHHHHHhhcccCCeEEEEeCCCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      .++..+.+.|+|||++++.+...
T Consensus       177 ~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          177 RVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             HHHHHHHHhCCCCcEEEEEEecC
Confidence            78999999999999999877544

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.21  E-value=1.8e-06  Score=67.41  Aligned_cols=78  Identities=9%  Similarity=0.049  Sum_probs=63.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~   85 (139)
                      ..+++++|+ +.+++.|++++...++.++++++++|+.+.   +      ..   .||+|++.....+     ...+++.
T Consensus       206 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~---~~D~v~~~~vl~~~~~~~~~~~l~~  272 (374)
T 1qzz_A          206 HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L------PV---TADVVLLSFVLLNWSDEDALTILRG  272 (374)
T ss_dssp             TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SC---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc---C------CC---CCCEEEEeccccCCCHHHHHHHHHH
Confidence            568999999 999999999999999877999999998752   2      24   6999998653322     2367888


Q ss_pred             HhhcccCCeEEEEeCC
Q 044253           86 LMTLFKVGGIVIYDNT  101 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~  101 (139)
                      +.+.|+|||++++.+.
T Consensus       273 ~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          273 CVRALEPGGRLLVLDR  288 (374)
T ss_dssp             HHHHEEEEEEEEEEEC
T ss_pred             HHHhcCCCcEEEEEec
Confidence            9999999998887555

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.21  E-value=5.1e-07  Score=66.66  Aligned_cols=80  Identities=13%  Similarity=-0.029  Sum_probs=59.9

Q ss_pred             hhhcceeEEeCC-ccHHHHH---HHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------
Q 044253            9 FFIYFIVAIDVS-RESSETG---LPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------   77 (139)
Q Consensus         9 ~~~~~v~~vD~s-~~~~~~A---r~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------   77 (139)
                      ..+.+|++||+| +.+++.|   ++++...++. +++++++|+... +...     .+   .+|.|++..+..       
T Consensus        46 ~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l-~~~~-----~d---~v~~i~~~~~~~~~~~~~~  115 (225)
T 3p2e_A           46 DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESL-PFEL-----KN---IADSISILFPWGTLLEYVI  115 (225)
T ss_dssp             CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBC-CGGG-----TT---CEEEEEEESCCHHHHHHHH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHh-hhhc-----cC---eEEEEEEeCCCcHHhhhhh
Confidence            456789999999 6666665   8888888874 799999999875 2210     24   788888865422       


Q ss_pred             -chHHHHHHHhhcccCCeEEEE
Q 044253           78 -NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 -~~~~~~~~~~~lL~~gG~ii~   98 (139)
                       .+...+..+.++|+|||.+++
T Consensus       116 ~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          116 KPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TTCHHHHHHHHTTEEEEEEEEE
T ss_pred             cchHHHHHHHHHhcCCCcEEEE
Confidence             234578889999999999988

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.21  E-value=6e-06  Score=62.57  Aligned_cols=81  Identities=9%  Similarity=0.093  Sum_probs=57.3

Q ss_pred             eEEeCCccHHHHHHHHHHHc-CCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhhc
Q 044253           15 VAIDVSRESSETGLPIIKKV-EVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMTL   89 (139)
Q Consensus        15 ~~vD~s~~~~~~Ar~n~~~~-g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~l   89 (139)
                      +++|.|++|++.|++.+... ++.. ++.+..+++.++...+.... +++   +||+|++...   ..+....+..+.++
T Consensus        86 ~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~---~fD~V~~~~~l~~~~d~~~~l~~~~r~  161 (292)
T 2aot_A           86 EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK-ELQ---KWDFIHMIQMLYYVKDIPATLKFFHSL  161 (292)
T ss_dssp             EEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT-CCC---CEEEEEEESCGGGCSCHHHHHHHHHHT
T ss_pred             EEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc-CCC---ceeEEEEeeeeeecCCHHHHHHHHHHH
Confidence            99999999999999998764 4421 34556777776532210000 035   8999998753   23567789999999


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+|||++++-
T Consensus       162 LkpgG~l~i~  171 (292)
T 2aot_A          162 LGTNAKMLII  171 (292)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCcEEEEE
Confidence            9999999874

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.20  E-value=1.5e-06  Score=63.30  Aligned_cols=79  Identities=10%  Similarity=0.022  Sum_probs=59.4

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC----C---cch
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH----K---DNY   79 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~----~---~~~   79 (139)
                      .+..+.+++++|+|+++++.|++++      .+++++++|+.+. + .      ..   +||+|++...    .   ...
T Consensus        58 l~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~------~~---~~D~v~~~~~~~~~~~~~~~~  120 (239)
T 3bxo_A           58 FTKEFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDF-R-L------GR---KFSAVVSMFSSVGYLKTTEEL  120 (239)
T ss_dssp             HHHHHSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTC-C-C------SS---CEEEEEECTTGGGGCCSHHHH
T ss_pred             HHHhCCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHc-c-c------CC---CCcEEEEcCchHhhcCCHHHH
Confidence            3444568999999999999999874      3589999998764 1 1      25   8999995331    1   234


Q ss_pred             HHHHHHHhhcccCCeEEEEeCCC
Q 044253           80 RNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      ..+++.+.++|+|||.+++....
T Consensus       121 ~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          121 GAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             HHHHHHHHHhcCCCeEEEEEecc
Confidence            56788889999999999997543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.19  E-value=2e-06  Score=64.36  Aligned_cols=79  Identities=10%  Similarity=0.021  Sum_probs=59.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-hHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-YRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-~~~~~~~~~~l   89 (139)
                      ..+|+++|+++++++.++++++..   .++..+.+|+.... .....   .+   .+|+||+|..... ....+..+.+.
T Consensus       102 ~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~-~~~~~---~~---~vDvVf~d~~~~~~~~~~l~~~~r~  171 (233)
T 4df3_A          102 RGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPE-KYRHL---VE---GVDGLYADVAQPEQAAIVVRNARFF  171 (233)
T ss_dssp             TCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGG-GGTTT---CC---CEEEEEECCCCTTHHHHHHHHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCcc-ccccc---cc---eEEEEEEeccCChhHHHHHHHHHHh
Confidence            357999999999999999887654   36888999887542 11110   35   8999999986543 34577888899


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |||||.+++.
T Consensus       172 LKpGG~lvI~  181 (233)
T 4df3_A          172 LRDGGYMLMA  181 (233)
T ss_dssp             EEEEEEEEEE
T ss_pred             ccCCCEEEEE
Confidence            9999999874

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.18  E-value=9.7e-07  Score=63.38  Aligned_cols=73  Identities=10%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhhc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMTL   89 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~l   89 (139)
                      +++++|+|+++++.|++++      .+++++++|+.+. + ..     .+   +||+|++...   ..+....++.+.++
T Consensus        58 ~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~~~  121 (211)
T 2gs9_A           58 QKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P-FP-----GE---SFDVVLLFTTLEFVEDVERVLLEARRV  121 (211)
T ss_dssp             EEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C-SC-----SS---CEEEEEEESCTTTCSCHHHHHHHHHHH
T ss_pred             eEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C-CC-----CC---cEEEEEEcChhhhcCCHHHHHHHHHHH
Confidence            8999999999999999886      4689999998753 2 11     35   8999998753   23467788999999


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+|||.+++...
T Consensus       122 L~pgG~l~i~~~  133 (211)
T 2gs9_A          122 LRPGGALVVGVL  133 (211)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cCCCCEEEEEec
Confidence            999999998644

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.14  E-value=1.5e-06  Score=65.95  Aligned_cols=83  Identities=16%  Similarity=0.106  Sum_probs=56.2

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N   78 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~   78 (139)
                      ++..+..+.+|+++|+|++|++.|++++....  -...+...+.. .....      .+   +||+|+++....     .
T Consensus        60 a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~-~~~~~------~~---~fD~Vv~~~~l~~~~~~~  127 (261)
T 3iv6_A           60 IEKALERGASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAE-IPKEL------AG---HFDFVLNDRLINRFTTEE  127 (261)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSC-CCGGG------TT---CCSEEEEESCGGGSCHHH
T ss_pred             HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccc-ccccc------CC---CccEEEEhhhhHhCCHHH
Confidence            45566678899999999999999999986542  12333322220 00111      35   899999987432     2


Q ss_pred             hHHHHHHHhhcccCCeEEEEe
Q 044253           79 YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ....+..+.++| |||++++.
T Consensus       128 ~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          128 ARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             HHHHHHHHHHHH-TTSEEEEE
T ss_pred             HHHHHHHHHHhC-cCcEEEEE
Confidence            345677888899 99999875

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.12  E-value=8.2e-06  Score=63.60  Aligned_cols=80  Identities=5%  Similarity=-0.071  Sum_probs=63.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~   85 (139)
                      ..+++++|+ +.+++.|++++...++.++++++.+|+.+.  ..       .   .+|+|++.....+     ...+++.
T Consensus       214 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-------~---~~D~v~~~~vlh~~~d~~~~~~l~~  280 (359)
T 1x19_A          214 ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY-------P---EADAVLFCRILYSANEQLSTIMCKK  280 (359)
T ss_dssp             TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CC-------C---CCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC--CC-------C---CCCEEEEechhccCCHHHHHHHHHH
Confidence            568999999 999999999999999888899999999764  22       3   4699998653322     4567888


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.|+|||.+++-+...
T Consensus       281 ~~~~L~pgG~l~i~e~~~  298 (359)
T 1x19_A          281 AFDAMRSGGRLLILDMVI  298 (359)
T ss_dssp             HHTTCCTTCEEEEEEECC
T ss_pred             HHHhcCCCCEEEEEeccc
Confidence            999999999997655443

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.11  E-value=2.4e-06  Score=64.55  Aligned_cols=87  Identities=8%  Similarity=-0.014  Sum_probs=58.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHc-----------------CCC------------CcEEEEeCChHHHHHhhHHhhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKV-----------------EVD------------LKINLMESRALPALDQLLKDEKI   60 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~-----------------g~~------------~~i~~~~~da~~~l~~~~~~~~~   60 (139)
                      .+.+|+++|+|+++++.|++++...                 |..            ..++++++|+...++. ....-+
T Consensus        93 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~  171 (289)
T 2g72_A           93 HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPL-GAGSPA  171 (289)
T ss_dssp             GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTT-CSSCSS
T ss_pred             CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCc-cccccC
Confidence            4568999999999999999876532                 100            0256777788663221 000000


Q ss_pred             ccCCCceeEEEEcCCC-------cchHHHHHHHhhcccCCeEEEEeC
Q 044253           61 HFFFENFDYAFVDAHK-------DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        61 ~~~~~~fD~If~D~~~-------~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+   +||+|++....       .++...+..+.++|+|||++++..
T Consensus       172 ~~---~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          172 PL---PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             CS---SEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CC---CCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            23   69999987532       245677888999999999999864

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.10  E-value=4e-06  Score=59.84  Aligned_cols=74  Identities=14%  Similarity=0.058  Sum_probs=54.0

Q ss_pred             hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----
Q 044253            5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----   78 (139)
Q Consensus         5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----   78 (139)
                      +..+..+. +|+++|+|+++++.|++|+.      +++++++|+.+.          ..   +||+|+++++...     
T Consensus        67 ~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~----------~~---~~D~v~~~~p~~~~~~~~  127 (200)
T 1ne2_A           67 CGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SG---KYDTWIMNPPFGSVVKHS  127 (200)
T ss_dssp             HHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CC---CEEEEEECCCC-------
T ss_pred             HHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC----------CC---CeeEEEECCCchhccCch
Confidence            33444444 69999999999999999875      689999999863          24   8999999986422     


Q ss_pred             hHHHHHHHhhcccCCeEEEEe
Q 044253           79 YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ...+++.+.+.+  |+++++.
T Consensus       128 ~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          128 DRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             CHHHHHHHHHHE--EEEEEEE
T ss_pred             hHHHHHHHHHhc--CcEEEEE
Confidence            245677777777  5555543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.08  E-value=4.3e-06  Score=71.33  Aligned_cols=79  Identities=6%  Similarity=-0.054  Sum_probs=58.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------hHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------YRNYRE   84 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------~~~~~~   84 (139)
                      .+++++|+|+++++.|++|+..+|+.+.+++.++|+.+......     .+   +||+|+++|++..       ...++.
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~-----~~---~~d~Iv~NPPYG~Rlg~~~~l~~ly~  328 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLP-----KG---PYGTVLSNPPYGERLDSEPALIALHS  328 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCT-----TC---CCCEEEECCCCCC---CCHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccc-----cC---CCCEEEeCCCccccccchhHHHHHHH
Confidence            57999999999999999999999998889999999987421110     23   6999999998532       222333


Q ss_pred             ---HHhhcccCCeEEEE
Q 044253           85 ---TLMTLFKVGGIVIY   98 (139)
Q Consensus        85 ---~~~~lL~~gG~ii~   98 (139)
                         ..++.+.+||.+.+
T Consensus       329 ~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          329 LLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHhhCCCCeEEE
Confidence               33344557888654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.08  E-value=1.3e-06  Score=61.34  Aligned_cols=73  Identities=12%  Similarity=0.048  Sum_probs=54.4

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------   77 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------   77 (139)
                      +..+..+ +|+++|+|+++++.          .++++++++|+.+.+.        .+   +||+|+++++..       
T Consensus        39 ~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~--------~~---~fD~i~~n~~~~~~~~~~~   96 (170)
T 3q87_B           39 EQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLCSIN--------QE---SVDVVVFNPPYVPDTDDPI   96 (170)
T ss_dssp             HHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBC--------GG---GCSEEEECCCCBTTCCCTT
T ss_pred             HHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhhhcc--------cC---CCCEEEECCCCccCCcccc
Confidence            3444455 99999999999988          3578999999987421        35   899999988643       


Q ss_pred             -----chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 -----NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 -----~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                           .....++.+.+.+ |||++++..
T Consensus        97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           97 IGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             TBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             ccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence                 1245677777777 999998743

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.07  E-value=3.4e-06  Score=71.20  Aligned_cols=73  Identities=11%  Similarity=0.032  Sum_probs=58.7

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHHHHHHHh
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRNYRETLM   87 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~~~~~~~   87 (139)
                      +|++||.|+ ++..|++....+|+.++|++++||+.+.  ++      .+   +.|+|+..--     .+.....+....
T Consensus       387 kVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev--~L------PE---KVDIIVSEwMG~fLl~E~mlevL~Ard  454 (637)
T 4gqb_A          387 KLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW--VA------PE---KADIIVSELLGSFADNELSPECLDGAQ  454 (637)
T ss_dssp             EEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC--CC------SS---CEEEEECCCCBTTBGGGCHHHHHHHHG
T ss_pred             EEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec--cC------Cc---ccCEEEEEcCcccccccCCHHHHHHHH
Confidence            689999997 7888999999999999999999999886  23      35   8999998641     122345566666


Q ss_pred             hcccCCeEEE
Q 044253           88 TLFKVGGIVI   97 (139)
Q Consensus        88 ~lL~~gG~ii   97 (139)
                      +.|+|||+++
T Consensus       455 r~LKPgGimi  464 (637)
T 4gqb_A          455 HFLKDDGVSI  464 (637)
T ss_dssp             GGEEEEEEEE
T ss_pred             HhcCCCcEEc
Confidence            8999999986

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.06  E-value=3.2e-06  Score=68.21  Aligned_cols=77  Identities=10%  Similarity=0.044  Sum_probs=61.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----------   78 (139)
                      ..+++++|+++.+++.|+.|+...|+.. +++++++|++...  .      ..   +||+|+.+|+...           
T Consensus       208 ~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~--~------~~---~fD~Iv~NPPf~~~~~~~~~~~~~  276 (445)
T 2okc_A          208 DKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE--P------ST---LVDVILANPPFGTRPAGSVDINRP  276 (445)
T ss_dssp             HTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--C------SS---CEEEEEECCCSSCCCTTCCCCCCT
T ss_pred             CeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc--c------cC---CcCEEEECCCCCCcccccchhhHh
Confidence            4689999999999999999999988853 6889999987641  1      34   8999999986432           


Q ss_pred             ---------hHHHHHHHhhcccCCeEEEE
Q 044253           79 ---------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ---------~~~~~~~~~~lL~~gG~ii~   98 (139)
                               ...+++.+.++|++||.+++
T Consensus       277 ~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          277 DFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             TSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence                     13578888899999999854

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.05  E-value=1.4e-06  Score=63.05  Aligned_cols=77  Identities=12%  Similarity=-0.005  Sum_probs=54.8

Q ss_pred             hcceeEEeCCccHHHHHHH----HHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------c
Q 044253           11 IYFIVAIDVSRESSETGLP----IIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------N   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~----n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~   78 (139)
                      +.+|+++|+|+++++.+.+    +....++ ++++++++|+.+. +..      ..   . |.|++.....        +
T Consensus        51 ~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l-~~~------~~---~-d~v~~~~~~~~~~~~~~~~  118 (218)
T 3mq2_A           51 SRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERL-PPL------SG---V-GELHVLMPWGSLLRGVLGS  118 (218)
T ss_dssp             TEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTC-CSC------CC---E-EEEEEESCCHHHHHHHHTS
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhC-CCC------CC---C-CEEEEEccchhhhhhhhcc
Confidence            6899999999998886433    3334565 4799999999873 221      23   4 7777544221        2


Q ss_pred             hHHHHHHHhhcccCCeEEEEe
Q 044253           79 YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ...+++.+.+.|+|||.+++.
T Consensus       119 ~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A          119 SPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             SSHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEE
Confidence            256788999999999999984

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.98  E-value=8.1e-06  Score=62.23  Aligned_cols=63  Identities=11%  Similarity=0.004  Sum_probs=50.7

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      ...+..+.+|+++|+|+.+++.+++++...+..++++++++|+.+.  .       -.   +||+|+++.+....
T Consensus        44 ~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~--~-------~~---~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           44 VKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT--D-------LP---FFDTCVANLPYQIS  106 (285)
T ss_dssp             HHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS--C-------CC---CCSEEEEECCGGGH
T ss_pred             HHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc--c-------ch---hhcEEEEecCcccc
Confidence            3445556799999999999999999998777766899999999764  1       24   79999999876443

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.95  E-value=1.6e-05  Score=65.95  Aligned_cols=78  Identities=5%  Similarity=-0.015  Sum_probs=61.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCC----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDL----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------   78 (139)
                      .+++++|+++.++..|+.|+...|+..    ++.++++|++......      ..   +||+|+.+|+...         
T Consensus       212 ~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~------~~---~fD~Vv~NPPf~~~~~~~~~~~  282 (541)
T 2ar0_A          212 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN------LP---KAHIVATNPPFGSAAGTNITRT  282 (541)
T ss_dssp             TSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT------SC---CEEEEEECCCCTTCSSCCCCSC
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCccccccc------cc---CCeEEEECCCcccccchhhHhh
Confidence            479999999999999999999888853    2889999987653211      35   8999999986432         


Q ss_pred             --------hHHHHHHHhhcccCCeEEEE
Q 044253           79 --------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 --------~~~~~~~~~~lL~~gG~ii~   98 (139)
                              ...++..+.++|++||++++
T Consensus       283 ~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~  310 (541)
T 2ar0_A          283 FVHPTSNKQLCFMQHIIETLHPGGRAAV  310 (541)
T ss_dssp             CSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence                    13578888899999998764

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.95  E-value=3.3e-06  Score=62.82  Aligned_cols=77  Identities=14%  Similarity=0.056  Sum_probs=57.8

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----cchHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----DNYRN   81 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----~~~~~   81 (139)
                      ..+..+.+|+++|+|+++++.|+++..     .+  ++++|+.+. + +.     .+   +||+|++....    .+...
T Consensus        71 ~l~~~~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~-~-~~-----~~---~fD~v~~~~~~~~~~~~~~~  133 (260)
T 2avn_A           71 FLQERGFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDL-P-FP-----SG---AFEAVLALGDVLSYVENKDK  133 (260)
T ss_dssp             HHHTTTCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSC-C-SC-----TT---CEEEEEECSSHHHHCSCHHH
T ss_pred             HHHHcCCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHC-C-CC-----CC---CEEEEEEcchhhhccccHHH
Confidence            334456789999999999999998753     12  788888753 2 21     35   89999986421    23577


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      .++.+.+.|+|||.+++.
T Consensus       134 ~l~~~~~~LkpgG~l~~~  151 (260)
T 2avn_A          134 AFSEIRRVLVPDGLLIAT  151 (260)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEE
Confidence            889999999999999875

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.95  E-value=2.4e-06  Score=61.55  Aligned_cols=74  Identities=11%  Similarity=0.007  Sum_probs=55.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~   87 (139)
                      +.+++++|+|+++++.++++.        .+++++|+.+....+.     .+   +||+|++....   .+...+++.+.
T Consensus        54 ~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~  117 (230)
T 3cc8_A           54 GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYE-----EE---QFDCVIFGDVLEHLFDPWAVIEKVK  117 (230)
T ss_dssp             TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSC-----TT---CEEEEEEESCGGGSSCHHHHHHHTG
T ss_pred             CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCC-----CC---ccCEEEECChhhhcCCHHHHHHHHH
Confidence            578999999999999998754        2688888875311111     35   89999986532   34567889999


Q ss_pred             hcccCCeEEEEeC
Q 044253           88 TLFKVGGIVIYDN  100 (139)
Q Consensus        88 ~lL~~gG~ii~~~  100 (139)
                      +.|+|||++++..
T Consensus       118 ~~L~~gG~l~~~~  130 (230)
T 3cc8_A          118 PYIKQNGVILASI  130 (230)
T ss_dssp             GGEEEEEEEEEEE
T ss_pred             HHcCCCCEEEEEe
Confidence            9999999999853

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.95  E-value=5e-06  Score=65.97  Aligned_cols=82  Identities=6%  Similarity=0.068  Sum_probs=56.2

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNY   82 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~   82 (139)
                      ..+..+.+|+++|+|+.+++.|+++    +......+...+....++. .     ++   +||+|++...   ..++..+
T Consensus       124 ~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~-~-----~~---~fD~I~~~~vl~h~~d~~~~  190 (416)
T 4e2x_A          124 TIQEAGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR-T-----EG---PANVIYAANTLCHIPYVQSV  190 (416)
T ss_dssp             HHHHTTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH-H-----HC---CEEEEEEESCGGGCTTHHHH
T ss_pred             HHHHcCCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc-C-----CC---CEEEEEECChHHhcCCHHHH
Confidence            3344567999999999999999876    4432222222222222222 1     36   8999998753   2356788


Q ss_pred             HHHHhhcccCCeEEEEeC
Q 044253           83 RETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~  100 (139)
                      ++.+.++|+|||++++..
T Consensus       191 l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          191 LEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             HHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEEe
Confidence            999999999999999863

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.90  E-value=1.2e-05  Score=61.50  Aligned_cols=89  Identities=12%  Similarity=-0.033  Sum_probs=62.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCcee-----EEEEcCCCc------c
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFD-----YAFVDAHKD------N   78 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD-----~If~D~~~~------~   78 (139)
                      ..++|++||.|+.|++.||+.+...+. .+++++++|+.+.-.-+....- ..   .||     .|++.+...      .
T Consensus       104 P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~-~~---~~D~~~p~av~~~avLH~l~d~~~  178 (277)
T 3giw_A          104 PESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPASILDAPEL-RD---TLDLTRPVALTVIAIVHFVLDEDD  178 (277)
T ss_dssp             TTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHH-HT---TCCTTSCCEEEEESCGGGSCGGGC
T ss_pred             CCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChhhhhccccc-cc---ccCcCCcchHHhhhhHhcCCchhh
Confidence            367999999999999999999875542 5799999999875211100000 13   455     466665321      1


Q ss_pred             hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      ...++..+.+.|+|||++++.+...
T Consensus       179 p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          179 AVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             HHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             HHHHHHHHHHhCCCCcEEEEEeccC
Confidence            3568899999999999999876543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=97.89  E-value=1.2e-06  Score=65.30  Aligned_cols=76  Identities=9%  Similarity=0.034  Sum_probs=58.1

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYR   83 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~   83 (139)
                      .+..+.+|+++|+|+.+++.|+++.       +++++++|+.+. + +.     .+   +||+|++...   ..+....+
T Consensus        52 l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l  114 (261)
T 3ege_A           52 LANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL-A-LP-----DK---SVDGVISILAIHHFSHLEKSF  114 (261)
T ss_dssp             HHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC-C-SC-----TT---CBSEEEEESCGGGCSSHHHHH
T ss_pred             HHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC-C-CC-----CC---CEeEEEEcchHhhccCHHHHH
Confidence            3446789999999999999887643       699999999763 2 21     35   8999998763   24567889


Q ss_pred             HHHhhcccCCeEEEEeC
Q 044253           84 ETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~  100 (139)
                      +.+.+.|+ ||++++..
T Consensus       115 ~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          115 QEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             HHHHHHBC-SSCEEEEE
T ss_pred             HHHHHHhC-CcEEEEEE
Confidence            99999999 99666543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.88  E-value=2.8e-06  Score=59.48  Aligned_cols=72  Identities=7%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             EEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCC---C-cchHHHHHHHhhcc
Q 044253           16 AIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAH---K-DNYRNYRETLMTLF   90 (139)
Q Consensus        16 ~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~---~-~~~~~~~~~~~~lL   90 (139)
                      .+|+|++|++.|+++..     .+++++++|+.+.... ..     .+   +||+|++...   . .+....+..+.+.|
T Consensus        25 ~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~-----~~---~fD~V~~~~~l~~~~~~~~~~l~~~~r~L   91 (176)
T 2ld4_A           25 PVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHK-----ES---SFDIILSGLVPGSTTLHSAEILAEIARIL   91 (176)
T ss_dssp             CHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCC-----SS---CEEEEEECCSTTCCCCCCHHHHHHHHHHE
T ss_pred             eeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCC-----CC---CEeEEEECChhhhcccCHHHHHHHHHHHC
Confidence            49999999999998753     2489999999864210 01     35   8999998532   1 35678899999999


Q ss_pred             cCCeEEEEeC
Q 044253           91 KVGGIVIYDN  100 (139)
Q Consensus        91 ~~gG~ii~~~  100 (139)
                      +|||++++.+
T Consensus        92 kpgG~l~~~~  101 (176)
T 2ld4_A           92 RPGGCLFLKE  101 (176)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCEEEEEEc
Confidence            9999999853

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.87  E-value=1.1e-05  Score=55.37  Aligned_cols=74  Identities=14%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCc---ch------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKD---NY------   79 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~---~~------   79 (139)
                      ..+++++|+++ ++..           .+++++++|+.+.-  ..+..... ..   +||+|++++...   ..      
T Consensus        47 ~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~-~~---~~D~i~~~~~~~~~~~~~~~~~~  110 (180)
T 1ej0_A           47 KGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVG-DS---KVQVVMSDMAPNMSGTPAVDIPR  110 (180)
T ss_dssp             TCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHT-TC---CEEEEEECCCCCCCSCHHHHHHH
T ss_pred             CCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCC-CC---ceeEEEECCCccccCCCccchHH
Confidence            37899999999 6532           47999999987641  11110000 35   899999987432   11      


Q ss_pred             -----HHHHHHHhhcccCCeEEEEeC
Q 044253           80 -----RNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        80 -----~~~~~~~~~lL~~gG~ii~~~  100 (139)
                           ..+++.+.++|+|||.+++..
T Consensus       111 ~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (180)
T 1ej0_A          111 AMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                 467888889999999999743

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.86  E-value=6.8e-06  Score=62.69  Aligned_cols=80  Identities=16%  Similarity=0.165  Sum_probs=56.9

Q ss_pred             cceeEEeCCccHHHHHHHHHH--------------H---------cC-------CCCcEEEEeCChHHHHHhhHHhhhcc
Q 044253           12 YFIVAIDVSRESSETGLPIIK--------------K---------VE-------VDLKINLMESRALPALDQLLKDEKIH   61 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~--------------~---------~g-------~~~~i~~~~~da~~~l~~~~~~~~~~   61 (139)
                      .+|+++|+|+++++.|++++-              +         .|       +.+++++.++|..+.  .+..    .
T Consensus       138 ~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~--~~~~----~  211 (274)
T 1af7_A          138 WKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK--QYNV----P  211 (274)
T ss_dssp             EEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS--SCCC----C
T ss_pred             eEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCC--CCCc----C
Confidence            589999999999999998741              0         01       113699999998762  1100    2


Q ss_pred             cCCCceeEEEEcCCC-----cchHHHHHHHhhcccCCeEEEEeC
Q 044253           62 FFFENFDYAFVDAHK-----DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        62 ~~~~~fD~If~D~~~-----~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      +   +||+|++--..     .....++..+.+.|+|||++++..
T Consensus       212 ~---~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          212 G---PFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             C---CEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             C---CeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            4   89999995321     122567888889999999999853

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.84  E-value=1e-05  Score=62.07  Aligned_cols=61  Identities=10%  Similarity=0.009  Sum_probs=45.6

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN   78 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~   78 (139)
                      ...+..+.+|+++|+|+.+++.|++++...++ ++++++++|+.+. +        ..   +||+|+++++...
T Consensus        58 ~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~-~--------~~---~~D~Vv~n~py~~  118 (299)
T 2h1r_A           58 VKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT-V--------FP---KFDVCTANIPYKI  118 (299)
T ss_dssp             HHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS-C--------CC---CCSEEEEECCGGG
T ss_pred             HHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC-C--------cc---cCCEEEEcCCccc
Confidence            34444567999999999999999999988887 5899999998764 1        24   7999999987543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.84  E-value=2.6e-05  Score=60.22  Aligned_cols=60  Identities=18%  Similarity=0.045  Sum_probs=46.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      +.+|+++|+|+++++.|++|++.+|  ++++++++|+......+.. .+ ..   +||.|++|++..
T Consensus        50 ~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~-~g-~~---~~D~Vl~D~gvS  109 (301)
T 1m6y_A           50 GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKT-LG-IE---KVDGILMDLGVS  109 (301)
T ss_dssp             TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHH-TT-CS---CEEEEEEECSCC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHh-cC-CC---CCCEEEEcCccc
Confidence            5799999999999999999998887  5899999998775322211 00 15   799999998653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.79  E-value=2.5e-05  Score=59.60  Aligned_cols=86  Identities=12%  Similarity=-0.004  Sum_probs=65.3

Q ss_pred             CCchhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            2 PFNLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         2 ~~~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      ||+++++..  .++++++|+|+.+++.+++|+..+|..  .++.++|.....  .      ..   +||+|++--.....
T Consensus       145 pLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~--p------~~---~~DvaL~lkti~~L  211 (281)
T 3lcv_B          145 PLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR--L------DE---PADVTLLLKTLPCL  211 (281)
T ss_dssp             GGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC--C------CS---CCSEEEETTCHHHH
T ss_pred             HHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC--C------CC---CcchHHHHHHHHHh
Confidence            778887654  679999999999999999999999985  788888886542  1      35   89999886422111


Q ss_pred             -----HHHHHHHhhcccCCeEEEEeCC
Q 044253           80 -----RNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        80 -----~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                           ...+ .+++.|+++|++|.-..
T Consensus       212 e~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          212 ETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             HHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             hhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence                 1234 67889999999996554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.79  E-value=1.9e-05  Score=68.68  Aligned_cols=76  Identities=16%  Similarity=0.246  Sum_probs=58.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc------CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-----H
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV------EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-----R   80 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-----~   80 (139)
                      .+|++||+|+.+++.|++++...      ++ .+++++++|+.+. +..      ..   +||+|++......+     .
T Consensus       747 a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dL-p~~------d~---sFDlVV~~eVLeHL~dp~l~  815 (950)
T 3htx_A          747 QTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEF-DSR------LH---DVDIGTCLEVIEHMEEDQAC  815 (950)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSC-CTT------SC---SCCEEEEESCGGGSCHHHHH
T ss_pred             CeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhC-Ccc------cC---CeeEEEEeCchhhCChHHHH
Confidence            68999999999999999987643      44 4799999999874 211      35   89999997643322     3


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+++.+.++|+|| ++++.
T Consensus       816 ~~L~eI~RvLKPG-~LIIS  833 (950)
T 3htx_A          816 EFGEKVLSLFHPK-LLIVS  833 (950)
T ss_dssp             HHHHHHHHTTCCS-EEEEE
T ss_pred             HHHHHHHHHcCCC-EEEEE
Confidence            4778889999999 66554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.78  E-value=1.5e-05  Score=59.30  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=53.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|+|+++++.|+++.      .+++++.+|+... + +.     .+   +||+|++....    ..++.+.++|
T Consensus       109 ~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~~----~~l~~~~~~L  168 (269)
T 1p91_A          109 EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-FS-----DT---SMDAIIRIYAP----CKAEELARVV  168 (269)
T ss_dssp             TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-BC-----TT---CEEEEEEESCC----CCHHHHHHHE
T ss_pred             CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-CC-----CC---ceeEEEEeCCh----hhHHHHHHhc
Confidence            578999999999999998864      3578999998653 2 11     35   89999985432    2467788999


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +|||++++.
T Consensus       169 ~pgG~l~~~  177 (269)
T 1p91_A          169 KPGGWVITA  177 (269)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999874

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.67  E-value=8.1e-05  Score=63.55  Aligned_cols=80  Identities=9%  Similarity=-0.034  Sum_probs=57.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~~~~~~   86 (139)
                      .+|++||.|+.+...++.... +|+.++|+++++|+.+.-...... + .+   +.|+|+..--     .......+..+
T Consensus       447 ~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~~~-~-~e---kVDIIVSElmGsfl~nEL~pe~Ld~v  520 (745)
T 3ua3_A          447 VKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAKDR-G-FE---QPDIIVSELLGSFGDNELSPECLDGV  520 (745)
T ss_dssp             EEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHHHT-T-CC---CCSEEEECCCBTTBGGGSHHHHHHTT
T ss_pred             cEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccccccC-C-CC---cccEEEEeccccccchhccHHHHHHH
Confidence            499999999988876665554 888889999999999873210000 0 24   8999998752     12234567777


Q ss_pred             hhcccCCeEEE
Q 044253           87 MTLFKVGGIVI   97 (139)
Q Consensus        87 ~~lL~~gG~ii   97 (139)
                      .+.|+|||+++
T Consensus       521 ~r~Lkp~Gi~i  531 (745)
T 3ua3_A          521 TGFLKPTTISI  531 (745)
T ss_dssp             GGGSCTTCEEE
T ss_pred             HHhCCCCcEEE
Confidence            78999999986

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.66  E-value=2.6e-05  Score=56.36  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             eEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhhccc
Q 044253           15 VAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMTLFK   91 (139)
Q Consensus        15 ~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~lL~   91 (139)
                      +++|+|+++++.++++        +++++++|+... + ..     .+   +||+|++...   ..+...+++.+.+.|+
T Consensus        69 ~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~~~L~  130 (219)
T 1vlm_A           69 IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-LK-----DE---SFDFALMVTTICFVDDPERALKEAYRILK  130 (219)
T ss_dssp             EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-SC-----TT---CEEEEEEESCGGGSSCHHHHHHHHHHHEE
T ss_pred             hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-CC-----CC---CeeEEEEcchHhhccCHHHHHHHHHHHcC
Confidence            9999999999999987        478899988653 2 11     35   8999998753   2345778899999999


Q ss_pred             CCeEEEEeCC
Q 044253           92 VGGIVIYDNT  101 (139)
Q Consensus        92 ~gG~ii~~~~  101 (139)
                      |||.+++...
T Consensus       131 pgG~l~i~~~  140 (219)
T 1vlm_A          131 KGGYLIVGIV  140 (219)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCcEEEEEEe
Confidence            9999998644

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.62  E-value=0.00022  Score=51.10  Aligned_cols=77  Identities=18%  Similarity=0.282  Sum_probs=49.6

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-----HHhhHHhhhcccCCCceeEEEEcCCCc--c--
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-----LDQLLKDEKIHFFFENFDYAFVDAHKD--N--   78 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-----l~~~~~~~~~~~~~~~fD~If~D~~~~--~--   78 (139)
                      +....+|++||+++..           .. .+++++++|+.+.     +.....+.+ ..   +||+|++|+...  .  
T Consensus        44 a~~~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~-~~---~~D~Vlsd~~~~~~g~~  107 (191)
T 3dou_A           44 NSLARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEG-IE---KVDDVVSDAMAKVSGIP  107 (191)
T ss_dssp             TTTCSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHT-CS---SEEEEEECCCCCCCSCH
T ss_pred             HHcCCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhccc-CC---cceEEecCCCcCCCCCc
Confidence            3346789999999862           22 4799999998642     111110000 14   899999997321  0  


Q ss_pred             ----------hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 ----------YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 ----------~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                                ....++.+.++|+|||.+++.-
T Consensus       108 ~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A          108 SRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                      1235666778999999999753

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.61  E-value=1.5e-05  Score=63.02  Aligned_cols=67  Identities=16%  Similarity=0.238  Sum_probs=52.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+++++|+|+.+++.|          .+++++++|+.....        ..   +||+|+++|+...            
T Consensus        64 ~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~--------~~---~fD~Ii~NPPy~~~~~~~~~~~~~~  122 (421)
T 2ih2_A           64 AYRFVGVEIDPKALDLP----------PWAEGILADFLLWEP--------GE---AFDLILGNPPYGIVGEASKYPIHVF  122 (421)
T ss_dssp             CSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCC--------SS---CEEEEEECCCCCCBSCTTTCSBCCC
T ss_pred             CCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCc--------cC---CCCEEEECcCccCcccccccccccC
Confidence            46899999999999887          479999999986421        35   8999999875311            


Q ss_pred             --------------------hHHHHHHHhhcccCCeEEEE
Q 044253           79 --------------------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 --------------------~~~~~~~~~~lL~~gG~ii~   98 (139)
                                          +..+++.+.++|++||.+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A          123 KAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             HHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence                                12457788899999999875

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.58  E-value=5e-06  Score=64.05  Aligned_cols=80  Identities=16%  Similarity=0.008  Sum_probs=53.8

Q ss_pred             hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEE-eCChHHHHH-hhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLM-ESRALPALD-QLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~-~~da~~~l~-~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      ..+..+ .+|++||+|++|++.+.++      ..++... ..++...-. .+.     ..   +||+|++|.........
T Consensus       102 ~L~~~ga~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l~-----~~---~fD~v~~d~sf~sl~~v  167 (291)
T 3hp7_A          102 VMLQNGAKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDFT-----EG---LPSFASIDVSFISLNLI  167 (291)
T ss_dssp             HHHHTTCSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGCT-----TC---CCSEEEECCSSSCGGGT
T ss_pred             HHHhCCCCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhCC-----CC---CCCEEEEEeeHhhHHHH
Confidence            334444 4899999999999986442      1244333 334433211 111     23   59999999876667778


Q ss_pred             HHHHhhcccCCeEEEEe
Q 044253           83 RETLMTLFKVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~   99 (139)
                      +..+.++|+|||.+++-
T Consensus       168 L~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          168 LPALAKILVDGGQVVAL  184 (291)
T ss_dssp             HHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHcCcCCEEEEE
Confidence            99999999999999873

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.57  E-value=3e-05  Score=64.33  Aligned_cols=79  Identities=6%  Similarity=0.039  Sum_probs=60.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+++++|+++.++..|+.|+...|+..++.+.++|.+.. +...     ..   +||+|+++|+...            
T Consensus       283 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~-~~~~-----~~---~fD~Iv~NPPf~~~~~~~~~~~~d~  353 (544)
T 3khk_A          283 QISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD-DQHP-----DL---RADFVMTNPPFNMKDWWHEKLADDP  353 (544)
T ss_dssp             GEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS-CSCT-----TC---CEEEEEECCCSSCCSCCCGGGTTCG
T ss_pred             hceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC-cccc-----cc---cccEEEECCCcCCccccchhhhhhh
Confidence            4579999999999999999999999876666689998753 1111     35   8999999986431            


Q ss_pred             -------------h-------HHHHHHHhhcccCCeEEEE
Q 044253           79 -------------Y-------RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 -------------~-------~~~~~~~~~lL~~gG~ii~   98 (139)
                                   .       ..++..+..+|++||++++
T Consensus       354 r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          354 RWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             GGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence                         0       1467888899999999643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.54  E-value=0.00011  Score=60.99  Aligned_cols=62  Identities=18%  Similarity=0.049  Sum_probs=51.1

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      +.+.|+.+++|++||.++.+++.|+......|.. ++++.++++.+......     .+   +||+|++-.
T Consensus        81 ~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~-----~~---~fD~v~~~e  142 (569)
T 4azs_A           81 SLSLASKGATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALE-----EG---EFDLAIGLS  142 (569)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCC-----TT---SCSEEEEES
T ss_pred             HHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhcc-----CC---CccEEEECc
Confidence            4566788999999999999999999999888753 69999999998865432     35   899999854

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.54  E-value=6.2e-06  Score=61.24  Aligned_cols=79  Identities=13%  Similarity=0.025  Sum_probs=49.8

Q ss_pred             hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHH-HhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPAL-DQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      ..+..+ .+|++||+|++|++.|+++..      ++.... .++.... ..+.     ..   .||.+.+|........+
T Consensus        54 ~la~~g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~~-----~~---~~d~~~~D~v~~~l~~~  119 (232)
T 3opn_A           54 VMLQNGAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADFE-----QG---RPSFTSIDVSFISLDLI  119 (232)
T ss_dssp             HHHHTTCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGCC-----SC---CCSEEEECCSSSCGGGT
T ss_pred             HHHhcCCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHcC-----cC---CCCEEEEEEEhhhHHHH
Confidence            344445 489999999999999877532      222221 1221110 1110     11   26777777655455778


Q ss_pred             HHHHhhcccCCeEEEE
Q 044253           83 RETLMTLFKVGGIVIY   98 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~   98 (139)
                      +..+.++|+|||.+++
T Consensus       120 l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          120 LPPLYEILEKNGEVAA  135 (232)
T ss_dssp             HHHHHHHSCTTCEEEE
T ss_pred             HHHHHHhccCCCEEEE
Confidence            8999999999999987

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.53  E-value=0.00011  Score=60.92  Aligned_cols=80  Identities=10%  Similarity=0.008  Sum_probs=60.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHH-HhhHHhhhcccCCCceeEEEEcCCCcc----------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPAL-DQLLKDEKIHFFFENFDYAFVDAHKDN----------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~~~~----------   78 (139)
                      ..+++++|+++.+...|+.|+...|+. +++.+.++|.+..- +...     ..   +||+|+.+||...          
T Consensus       248 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~-----~~---~fD~IvaNPPf~~~~~~~~~~~~  319 (542)
T 3lkd_A          248 TVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQE-----PT---NFDGVLMNPPYSAKWSASSGFMD  319 (542)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSS-----CC---CBSEEEECCCTTCCCCCCGGGGG
T ss_pred             CceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccc-----cc---cccEEEecCCcCCccccchhhhh
Confidence            457999999999999999999999985 57899999987540 1111     34   8999999986321          


Q ss_pred             ------h----------HHHHHHHhhccc-CCeEEEE
Q 044253           79 ------Y----------RNYRETLMTLFK-VGGIVIY   98 (139)
Q Consensus        79 ------~----------~~~~~~~~~lL~-~gG~ii~   98 (139)
                            +          ..++..+..+|+ +||++.+
T Consensus       320 d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~  356 (542)
T 3lkd_A          320 DPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI  356 (542)
T ss_dssp             STTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred             hhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence                  1          126778889999 9999743

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.53  E-value=9.7e-05  Score=55.41  Aligned_cols=53  Identities=11%  Similarity=0.125  Sum_probs=41.1

Q ss_pred             cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------------hHHHHHHHhhcccCCeEEEEe
Q 044253           39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----------------YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----------------~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ..+++++|+.+.++.+.     .+   +||+||+||+...                 ...+++.+.++|++||.+++.
T Consensus         4 ~~~l~~gD~~~~l~~l~-----~~---~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVE-----NK---SVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSSEEECCHHHHHHHSC-----TT---CEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhcc-----cc---ccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            45789999999988763     35   8999999997531                 134566677899999999875

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.52  E-value=7.2e-05  Score=56.41  Aligned_cols=84  Identities=12%  Similarity=0.019  Sum_probs=63.3

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---   78 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---   78 (139)
                      ||++++. ...+++++|+|+.+++.+++++..+|.  +.++..+|.....  .      .+   +||+|++--..+.   
T Consensus       118 pLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~--~------~~---~~DvvLllk~lh~LE~  183 (253)
T 3frh_A          118 PLALYER-GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAP--P------AE---AGDLALIFKLLPLLER  183 (253)
T ss_dssp             HHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSC--C------CC---BCSEEEEESCHHHHHH
T ss_pred             HHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCC--C------CC---CcchHHHHHHHHHhhh
Confidence            6788877 788999999999999999999998884  5899999987542  2      35   8999987521111   


Q ss_pred             --hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 --YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 --~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                        -...+ .+++.|+++|++|.-.
T Consensus       184 q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          184 EQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             hchhhHH-HHHHHhcCCCEEEEcC
Confidence              11223 5667999999998644

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.45  E-value=0.00019  Score=55.61  Aligned_cols=54  Identities=9%  Similarity=0.132  Sum_probs=42.3

Q ss_pred             CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------------hHHHHHHHhhcccCCeEEEEe
Q 044253           38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----------------YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----------------~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ++.++++||+.+.++.+.     ++   +||+||+||+...                 ....+..+.++|++||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~-----~~---svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP-----EE---SISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC-----SS---CEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC-----CC---CeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            568999999999876553     45   8999999997531                 234566777899999999874

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.42  E-value=0.00022  Score=50.50  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=47.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH-------------------HhhHHhhhcccCCCceeEEE
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL-------------------DQLLKDEKIHFFFENFDYAF   71 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l-------------------~~~~~~~~~~~~~~~fD~If   71 (139)
                      ..+|+++|+|+..           .. ++++++++|+.+..                   ..+..... +.   +||+|+
T Consensus        48 ~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~---~fD~v~  111 (201)
T 2plw_A           48 KNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQ-DK---KIDIIL  111 (201)
T ss_dssp             CEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHT-TC---CEEEEE
T ss_pred             CceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccccchhhHHHHHhhcC-CC---cccEEE
Confidence            4789999999942           22 46899999986531                   01000000 35   899999


Q ss_pred             EcCCCcc-------h-------HHHHHHHhhcccCCeEEEEe
Q 044253           72 VDAHKDN-------Y-------RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        72 ~D~~~~~-------~-------~~~~~~~~~lL~~gG~ii~~   99 (139)
                      +++....       .       ...+..+.++|+|||.+++.
T Consensus       112 ~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A          112 SDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            9864221       1       12566788999999999974

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.41  E-value=0.00015  Score=55.77  Aligned_cols=65  Identities=11%  Similarity=0.089  Sum_probs=49.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEE-EeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINL-MESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~-~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------   77 (139)
                      ..+|+++|+|+.             + +++++ +++|+.+. . .      ..   +||+|++|....            
T Consensus        92 ~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~-~-~------~~---~fD~Vvsn~~~~~~g~~~~d~~~~  146 (290)
T 2xyq_A           92 GTLLVDSDLNDF-------------V-SDADSTLIGDCATV-H-T------AN---KWDLIISDMYDPRTKHVTKENDSK  146 (290)
T ss_dssp             TCEEEEEESSCC-------------B-CSSSEEEESCGGGC-C-C------SS---CEEEEEECCCCCC---CCSCCCCC
T ss_pred             CCEEEEEECCCC-------------C-CCCEEEEECccccC-C-c------cC---cccEEEEcCCccccccccccccch
Confidence            468999999998             1 35788 99999764 1 1      25   899999985311            


Q ss_pred             --chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 --NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 --~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                        .+...++.+.+.|+|||++++..
T Consensus       147 ~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          147 EGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             CTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence              13467888889999999999853

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.39  E-value=0.00029  Score=54.67  Aligned_cols=54  Identities=11%  Similarity=0.124  Sum_probs=41.9

Q ss_pred             CcEEEE-eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----------h----HHHHHHHhhcccCCeEEEEe
Q 044253           38 LKINLM-ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----------Y----RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        38 ~~i~~~-~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----------~----~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ...+++ +||+.+.++.+.     ++   +||+||+||++..          |    ...+..+.++|++||.+++.
T Consensus        37 ~~~~l~i~gD~l~~L~~l~-----~~---svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLP-----DD---SVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSC-----TT---CEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEECCcHHHHHHhCc-----cC---CcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            357888 999999988763     45   8999999998632          2    34456667899999999885

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.36  E-value=0.00034  Score=53.80  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=46.5

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      ..+..+.+|++||+|+++++.+++++..  . ++++++++|+.+.  .+.     ..   +||.|+.+.+..
T Consensus        67 ~La~~~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l~~--~~~-----~~---~fD~Iv~NlPy~  125 (295)
T 3gru_A           67 ELAKNAKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDALKV--DLN-----KL---DFNKVVANLPYQ  125 (295)
T ss_dssp             HHHHHSSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTTTS--CGG-----GS---CCSEEEEECCGG
T ss_pred             HHHhcCCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchhhC--Ccc-----cC---CccEEEEeCccc
Confidence            3444567999999999999999999873  2 4799999999875  121     34   799999998754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.28  E-value=0.00037  Score=53.16  Aligned_cols=54  Identities=13%  Similarity=0.077  Sum_probs=40.4

Q ss_pred             CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----------------h-------HHHHHHHhhcccCCe
Q 044253           38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----------------Y-------RNYRETLMTLFKVGG   94 (139)
Q Consensus        38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----------------~-------~~~~~~~~~lL~~gG   94 (139)
                      .++++++||+.+.++.+.     ++   +||+|++||++..                +       ..++..+.++|++||
T Consensus        20 ~~~~i~~gD~~~~l~~l~-----~~---s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G   91 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFP-----EA---SVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGG   91 (297)
T ss_dssp             -CEEEEESCHHHHHTTSC-----TT---CEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred             cCCEEEECcHHHHHhhCC-----CC---ceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCc
Confidence            468999999999876653     35   8999999997531                1       224556778999999


Q ss_pred             EEEEe
Q 044253           95 IVIYD   99 (139)
Q Consensus        95 ~ii~~   99 (139)
                      .+++.
T Consensus        92 ~l~i~   96 (297)
T 2zig_A           92 RLVIV   96 (297)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.21  E-value=0.00068  Score=47.60  Aligned_cols=73  Identities=10%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEE-eCChHHHHH--hhHHhhhcccCCCceeEEEEcCCCc-------ch--
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLM-ESRALPALD--QLLKDEKIHFFFENFDYAFVDAHKD-------NY--   79 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~-~~da~~~l~--~~~~~~~~~~~~~~fD~If~D~~~~-------~~--   79 (139)
                      .+|+++|+|+.+           +. .+++++ ++|+.....  .+....+ +.   +||+|+++....       +.  
T Consensus        56 ~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~~~~~~-~~---~fD~V~~~~~~~~~~~~~~~~~~  119 (196)
T 2nyu_A           56 GFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRILEVLP-GR---RADVILSDMAPNATGFRDLDHDR  119 (196)
T ss_dssp             CEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHHHHHSG-GG---CEEEEEECCCCCCCSCHHHHHHH
T ss_pred             ceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHHHHhcC-CC---CCcEEEeCCCCCCCCCcccCHHH
Confidence            689999999952           22 468899 998754311  1100000 35   799999976321       11  


Q ss_pred             -----HHHHHHHhhcccCCeEEEEeC
Q 044253           80 -----RNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        80 -----~~~~~~~~~lL~~gG~ii~~~  100 (139)
                           ...++.+.++|+|||++++..
T Consensus       120 ~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A          120 LISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence                 356778889999999999864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.21  E-value=0.00032  Score=54.78  Aligned_cols=83  Identities=17%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRN   81 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~   81 (139)
                      .+....+++..|. |++++.|++++...+ .+|++++.+|+++.  .       ..   .+|+|++--...+     -..
T Consensus       199 ~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~--~-------~~---~~D~~~~~~vlh~~~d~~~~~  264 (353)
T 4a6d_A          199 SLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD--P-------LP---EADLYILARVLHDWADGKCSH  264 (353)
T ss_dssp             HHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS--C-------CC---CCSEEEEESSGGGSCHHHHHH
T ss_pred             HhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC--C-------CC---CceEEEeeeecccCCHHHHHH
Confidence            3334567888887 889999999887555 57999999998652  1       24   6899998543222     245


Q ss_pred             HHHHHhhcccCCeEEEEeCCCC
Q 044253           82 YRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      +++.+.+.|+|||.+++-+...
T Consensus       265 iL~~~~~al~pgg~lli~e~~~  286 (353)
T 4a6d_A          265 LLERIYHTCKPGGGILVIESLL  286 (353)
T ss_dssp             HHHHHHHHCCTTCEEEEEECCC
T ss_pred             HHHHHHhhCCCCCEEEEEEeee
Confidence            6888889999999988766544

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.12  E-value=0.00019  Score=55.74  Aligned_cols=79  Identities=13%  Similarity=-0.010  Sum_probs=55.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~   84 (139)
                      ...+++++|+ +.++.  ++++...+..++++++.+|+.+   .       ..   +||+|++.....+     ...+++
T Consensus       207 p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~---~-------~p---~~D~v~~~~vlh~~~d~~~~~~L~  270 (348)
T 3lst_A          207 PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR---E-------VP---HADVHVLKRILHNWGDEDSVRILT  270 (348)
T ss_dssp             TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT---C-------CC---CCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC---C-------CC---CCcEEEEehhccCCCHHHHHHHHH
Confidence            4567899999 44444  4444455666789999999962   1       13   7999998653221     246788


Q ss_pred             HHhhcccCCeEEEEeCCCCC
Q 044253           85 TLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~~  104 (139)
                      .+.+.|+|||.+++.+....
T Consensus       271 ~~~~~LkpgG~l~i~e~~~~  290 (348)
T 3lst_A          271 NCRRVMPAHGRVLVIDAVVP  290 (348)
T ss_dssp             HHHHTCCTTCEEEEEECCBC
T ss_pred             HHHHhcCCCCEEEEEEeccC
Confidence            89999999999988766543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.09  E-value=0.00075  Score=58.54  Aligned_cols=78  Identities=10%  Similarity=-0.078  Sum_probs=53.3

Q ss_pred             cceeEEeCCccHHHHH--HHHHHHcCCC---CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------
Q 044253           12 YFIVAIDVSRESSETG--LPIIKKVEVD---LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~A--r~n~~~~g~~---~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------   78 (139)
                      .+++++|+++.+++.|  +.|+..+++.   +...+...|.... ....     ..   +||+|+.+|+...        
T Consensus       349 ~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~-~~~~-----~~---kFDVVIgNPPYg~~~~~~~e~  419 (878)
T 3s1s_A          349 RQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-NPED-----FA---NVSVVVMNPPYVSGVTDPAIK  419 (878)
T ss_dssp             GGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC-CGGG-----GT---TEEEEEECCBCCSSCCCHHHH
T ss_pred             CeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc-cccc-----cC---CCCEEEECCCccccccchhhh
Confidence            5799999999999999  7776553321   2246667776652 1111     35   8999999997521        


Q ss_pred             ------------------------hHHHHHHHhhcccCCeEEEE
Q 044253           79 ------------------------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 ------------------------~~~~~~~~~~lL~~gG~ii~   98 (139)
                                              +..+++.+..+|++||.+.+
T Consensus       420 kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          420 RKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA  463 (878)
T ss_dssp             HHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred             hhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence                                    22356677789999999764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.07  E-value=0.00032  Score=50.19  Aligned_cols=63  Identities=16%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~~~~~~~l   89 (139)
                      .+++++|+|+.                +++++++|+.+. + +.     .+   +||+|++...  ..+...+++.+.++
T Consensus        87 ~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~l~~~~~~  140 (215)
T 2zfu_A           87 NPVHCFDLASL----------------DPRVTVCDMAQV-P-LE-----DE---SVDVAVFCLSLMGTNIRDFLEEANRV  140 (215)
T ss_dssp             SCEEEEESSCS----------------STTEEESCTTSC-S-CC-----TT---CEEEEEEESCCCSSCHHHHHHHHHHH
T ss_pred             ccEEEEeCCCC----------------CceEEEeccccC-C-CC-----CC---CEeEEEEehhccccCHHHHHHHHHHh
Confidence            58999999998                467888888763 2 11     35   8999998653  23557788999999


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+|||.+++.+
T Consensus       141 L~~gG~l~i~~  151 (215)
T 2zfu_A          141 LKPGGLLKVAE  151 (215)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCCCeEEEEEE
Confidence            99999999864

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.02  E-value=0.00072  Score=50.80  Aligned_cols=61  Identities=7%  Similarity=-0.047  Sum_probs=45.3

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ...+..+.+|++||+|+++++.+++++..   .++++++++|+.+. ++.+..    ..   +|| |+.+.++
T Consensus        45 ~~La~~~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~----~~---~~~-vv~NlPY  106 (255)
T 3tqs_A           45 DYLLTECDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKT----DK---PLR-VVGNLPY  106 (255)
T ss_dssp             HHHTTTSSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCC----SS---CEE-EEEECCH
T ss_pred             HHHHHhCCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhcc----CC---CeE-EEecCCc
Confidence            34455567999999999999999999865   35799999999876 222110    14   688 8888765

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.84  E-value=0.0013  Score=48.65  Aligned_cols=59  Identities=15%  Similarity=0.144  Sum_probs=42.7

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ...+..+.+|+++|+|+++++.+++++...   ++++++++|+.+.-  +..    ..   .| .|+.++++
T Consensus        46 ~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~--~~~----~~---~~-~vv~nlPy  104 (244)
T 1qam_A           46 LELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFK--FPK----NQ---SY-KIFGNIPY  104 (244)
T ss_dssp             HHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCC--CCS----SC---CC-EEEEECCG
T ss_pred             HHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCC--ccc----CC---Ce-EEEEeCCc
Confidence            344455679999999999999999988642   57999999998751  110    13   46 57777765

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.82  E-value=0.0014  Score=49.70  Aligned_cols=68  Identities=10%  Similarity=-0.150  Sum_probs=49.1

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      ..+..+.+|+++|+|+++++.+++++.  +  ++++++++|+.+.-  +..    ..   .+|.|+.+.++.--..++..
T Consensus        63 ~L~~~~~~V~avEid~~~~~~l~~~~~--~--~~v~vi~~D~l~~~--~~~----~~---~~~~iv~NlPy~iss~il~~  129 (271)
T 3fut_A           63 ALLEAGAEVTAIEKDLRLRPVLEETLS--G--LPVRLVFQDALLYP--WEE----VP---QGSLLVANLPYHIATPLVTR  129 (271)
T ss_dssp             HHHHTTCCEEEEESCGGGHHHHHHHTT--T--SSEEEEESCGGGSC--GGG----SC---TTEEEEEEECSSCCHHHHHH
T ss_pred             HHHHcCCEEEEEECCHHHHHHHHHhcC--C--CCEEEEECChhhCC--hhh----cc---CccEEEecCcccccHHHHHH
Confidence            445556899999999999999999875  2  57999999998761  110    13   68999999876443444333


Q ss_pred             H
Q 044253           86 L   86 (139)
Q Consensus        86 ~   86 (139)
                      +
T Consensus       130 l  130 (271)
T 3fut_A          130 L  130 (271)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.75  E-value=8.4e-05  Score=56.57  Aligned_cols=75  Identities=5%  Similarity=-0.015  Sum_probs=49.1

Q ss_pred             cceeEEeCCccHHHHHHHHH-HHcCCCCcEEEE--eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch----H--
Q 044253           12 YFIVAIDVSRESSETGLPII-KKVEVDLKINLM--ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY----R--   80 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~-~~~g~~~~i~~~--~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~----~--   80 (139)
                      .+|++||+++ ++..++++. .......+++++  ++|+..+ +        .+   +||+|++|....  .+    .  
T Consensus       104 ~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~---~fD~Vvsd~~~~~~~~~~d~~~~  170 (276)
T 2wa2_A          104 PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E--------PF---QADTVLCDIGESNPTAAVEASRT  170 (276)
T ss_dssp             TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C--------CC---CCSEEEECCCCCCSCHHHHHHHH
T ss_pred             CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C--------CC---CcCEEEECCCcCCCchhhhHHHH
Confidence            6899999999 543333211 001111268999  9998763 1        35   899999996411  11    1  


Q ss_pred             -HHHHHHhhcccCCe--EEEEe
Q 044253           81 -NYRETLMTLFKVGG--IVIYD   99 (139)
Q Consensus        81 -~~~~~~~~lL~~gG--~ii~~   99 (139)
                       ..++.+.+.|+|||  .+++.
T Consensus       171 l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          171 LTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEE
T ss_pred             HHHHHHHHHHhccCCCcEEEEE
Confidence             25777778999999  88874

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.71  E-value=4.3e-05  Score=56.61  Aligned_cols=82  Identities=5%  Similarity=-0.014  Sum_probs=57.3

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch----
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY----   79 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~----   79 (139)
                      ....+..+.+|+++|+|+++++.|++++.  + .++++++++|+.+.-  +..    .+   +| .|+.+++....    
T Consensus        44 ~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~--~~~----~~---~f-~vv~n~Py~~~~~~~  110 (245)
T 1yub_A           44 TTKLAKISKQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQ--FPN----KQ---RY-KIVGNIPYHLSTQII  110 (245)
T ss_dssp             SHHHHHHSSEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTT--CCC----SS---EE-EEEEECCSSSCHHHH
T ss_pred             HHHHHHhCCeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcC--ccc----CC---Cc-EEEEeCCccccHHHH
Confidence            44555566899999999999999998875  2 368999999998751  110    14   78 78888764321    


Q ss_pred             HHH----------H----HHHhhcccCCeEEEE
Q 044253           80 RNY----------R----ETLMTLFKVGGIVIY   98 (139)
Q Consensus        80 ~~~----------~----~~~~~lL~~gG~ii~   98 (139)
                      ..+          +    +.+.++|++||.+.+
T Consensus       111 ~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A          111 KKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             HHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             HHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            111          2    456789999998744

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.64  E-value=0.0023  Score=49.03  Aligned_cols=58  Identities=9%  Similarity=-0.016  Sum_probs=44.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~   78 (139)
                      +.+|+++|.|+++++.|++ ++.    +++++++++...+-..+. +.+ ..   ++|.|++|.+...
T Consensus        44 ~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~-~~g-~~---~vDgIL~DLGvSS  101 (285)
T 1wg8_A           44 GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLA-ALG-VE---RVDGILADLGVSS  101 (285)
T ss_dssp             TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHH-HTT-CS---CEEEEEEECSCCH
T ss_pred             CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHH-HcC-CC---CcCEEEeCCcccc
Confidence            6799999999999999998 643    589999999987633222 111 24   7999999986543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=96.46  E-value=0.0016  Score=50.97  Aligned_cols=74  Identities=8%  Similarity=0.032  Sum_probs=54.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~   84 (139)
                      ...+++++|+ +++++.|+++       ++++++.+|+.+.   +      ..   . |+|++.....+     ...+++
T Consensus       226 p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~------p~---~-D~v~~~~vlh~~~~~~~~~~l~  284 (368)
T 3reo_A          226 PSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDG---V------PK---G-DAIFIKWICHDWSDEHCLKLLK  284 (368)
T ss_dssp             TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CC---C-SEEEEESCGGGBCHHHHHHHHH
T ss_pred             CCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCC---C------CC---C-CEEEEechhhcCCHHHHHHHHH
Confidence            4568999999 8888777642       5799999998752   2      24   5 99998653322     235788


Q ss_pred             HHhhcccCCeEEEEeCCCCC
Q 044253           85 TLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~~  104 (139)
                      .+.+.|+|||.+++.+....
T Consensus       285 ~~~~~L~pgG~l~i~e~~~~  304 (368)
T 3reo_A          285 NCYAALPDHGKVIVAEYILP  304 (368)
T ss_dssp             HHHHHSCTTCEEEEEECCCC
T ss_pred             HHHHHcCCCCEEEEEEeccC
Confidence            89999999999988766553

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=96.45  E-value=0.0014  Score=51.21  Aligned_cols=74  Identities=7%  Similarity=-0.034  Sum_probs=54.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~   84 (139)
                      ...+++++|+ +++++.|++       .++++++.+|+.+.   +      ..   . |+|++.....+     ...+++
T Consensus       224 p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~---~------p~---~-D~v~~~~vlh~~~d~~~~~~L~  282 (364)
T 3p9c_A          224 PTIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFKE---V------PS---G-DTILMKWILHDWSDQHCATLLK  282 (364)
T ss_dssp             TTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTC---C------CC---C-SEEEEESCGGGSCHHHHHHHHH
T ss_pred             CCCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCCC---C------CC---C-CEEEehHHhccCCHHHHHHHHH
Confidence            4568999999 888877764       25899999998752   2      24   5 99998653322     346788


Q ss_pred             HHhhcccCCeEEEEeCCCCC
Q 044253           85 TLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~~  104 (139)
                      .+.+.|+|||.+++.+....
T Consensus       283 ~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          283 NCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             HHHHHSCTTCEEEEEECCBC
T ss_pred             HHHHHcCCCCEEEEEEeccC
Confidence            88899999999988766553

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.31  E-value=0.00041  Score=53.39  Aligned_cols=73  Identities=7%  Similarity=-0.090  Sum_probs=47.3

Q ss_pred             cceeEEeC----CccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch----H
Q 044253           12 YFIVAIDV----SRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY----R   80 (139)
Q Consensus        12 ~~v~~vD~----s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~----~   80 (139)
                      .+|++||+    ++.+++.++  .+..+ .++++++++ |+... +        ..   +||+|++|....  .+    .
T Consensus       104 ~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~--------~~---~fD~V~sd~~~~~g~~~~d~~  168 (305)
T 2p41_A          104 KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P--------PE---RCDTLLCDIGESSPNPTVEAG  168 (305)
T ss_dssp             TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C--------CC---CCSEEEECCCCCCSSHHHHHH
T ss_pred             CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C--------cC---CCCEEEECCccccCcchhhHH
Confidence            57999999    554332111  11112 257999999 88653 1        35   899999997531  11    1


Q ss_pred             ---HHHHHHhhcccCCeEEEEe
Q 044253           81 ---NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ---~~~~~~~~lL~~gG~ii~~   99 (139)
                         ..+..+.+.|+|||.+++.
T Consensus       169 ~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          169 RTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEE
Confidence               3566677899999999984

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=96.30  E-value=0.00093  Score=52.20  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---hH--HHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---YR--NYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---~~--~~~~~   85 (139)
                      ..+++++|+ +.+++.|++      . ++++++.+|+.+.   +       .   .||+|++.....+   ..  .+++.
T Consensus       233 ~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~-------~---~~D~v~~~~~lh~~~d~~~~~~l~~  291 (372)
T 1fp1_D          233 LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFAS---V-------P---QGDAMILKAVCHNWSDEKCIEFLSN  291 (372)
T ss_dssp             TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTTC---C-------C---CEEEEEEESSGGGSCHHHHHHHHHH
T ss_pred             CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcccC---C-------C---CCCEEEEecccccCCHHHHHHHHHH
Confidence            457888899 899888764      2 4699999998751   2       3   5999998653222   22  67888


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.|+|||.+++.+...
T Consensus       292 ~~~~L~pgG~l~i~e~~~  309 (372)
T 1fp1_D          292 CHKALSPNGKVIIVEFIL  309 (372)
T ss_dssp             HHHHEEEEEEEEEEEEEE
T ss_pred             HHHhcCCCCEEEEEEecc
Confidence            999999999998865544

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.20  E-value=0.00025  Score=53.53  Aligned_cols=76  Identities=8%  Similarity=-0.044  Sum_probs=48.8

Q ss_pred             cceeEEeCCccHHHHHHHHH-HHcCCCCcEEEE--eCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cch----H--
Q 044253           12 YFIVAIDVSRESSETGLPII-KKVEVDLKINLM--ESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNY----R--   80 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~-~~~g~~~~i~~~--~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~----~--   80 (139)
                      .+|++||+++ ++..+++.- .......+++++  ++|+.++ +        ..   +||+|++|...  ..+    .  
T Consensus        96 ~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~---~fD~V~sd~~~~~~~~~~d~~~~  162 (265)
T 2oxt_A           96 PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P--------VE---RTDVIMCDVGESSPKWSVESERT  162 (265)
T ss_dssp             TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C--------CC---CCSEEEECCCCCCSCHHHHHHHH
T ss_pred             CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C--------CC---CCcEEEEeCcccCCccchhHHHH
Confidence            7899999999 433332210 001111268999  8999863 1        35   89999998641  111    1  


Q ss_pred             -HHHHHHhhcccCCe--EEEEeC
Q 044253           81 -NYRETLMTLFKVGG--IVIYDN  100 (139)
Q Consensus        81 -~~~~~~~~lL~~gG--~ii~~~  100 (139)
                       ..++.+.+.|+|||  .+++..
T Consensus       163 l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          163 IKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHHHhccCCCeEEEEEe
Confidence             25677778999999  988843

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=96.11  E-value=0.002  Score=49.87  Aligned_cols=72  Identities=8%  Similarity=-0.021  Sum_probs=54.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chH--HHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYR--NYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~--~~~~~   85 (139)
                      ..+++++|+ +.+++.|++      . .+++++.+|+.+   .+       .   .||+|++.....   +..  .+++.
T Consensus       212 ~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~~-------p---~~D~v~~~~~lh~~~d~~~~~~l~~  270 (352)
T 1fp2_A          212 KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT---SI-------P---NADAVLLKYILHNWTDKDCLRILKK  270 (352)
T ss_dssp             TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT---CC-------C---CCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC---CC-------C---CccEEEeehhhccCCHHHHHHHHHH
Confidence            568999999 999988875      1 359999999865   12       3   699999865322   222  67888


Q ss_pred             HhhcccC---CeEEEEeCCCC
Q 044253           86 LMTLFKV---GGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~---gG~ii~~~~~~  103 (139)
                      +.+.|+|   ||++++.+...
T Consensus       271 ~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          271 CKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             HHHHHSGGGCCCEEEEEECEE
T ss_pred             HHHhCCCCCCCcEEEEEEeec
Confidence            9999999   99988766544

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.02  E-value=0.0048  Score=52.06  Aligned_cols=82  Identities=10%  Similarity=0.035  Sum_probs=56.6

Q ss_pred             cceeEEeCCccHHHHHHHHH--------------HHc-----C-----CCC---cEEEEeCChHHHHHhhHHhhhcccCC
Q 044253           12 YFIVAIDVSRESSETGLPII--------------KKV-----E-----VDL---KINLMESRALPALDQLLKDEKIHFFF   64 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~--------------~~~-----g-----~~~---~i~~~~~da~~~l~~~~~~~~~~~~~   64 (139)
                      .+++++|..|-..+.+++.+              ...     |     +.+   .++++.||+.+.++++....  ..  
T Consensus        95 l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~--~~--  170 (689)
T 3pvc_A           95 LHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDSL--NN--  170 (689)
T ss_dssp             EEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGG--TT--
T ss_pred             EEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhccccc--CC--
Confidence            57899999776666555432              222     1     111   57889999999988752100  24  


Q ss_pred             CceeEEEEcCCCcc------hHHHHHHHhhcccCCeEEEE
Q 044253           65 ENFDYAFVDAHKDN------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        65 ~~fD~If~D~~~~~------~~~~~~~~~~lL~~gG~ii~   98 (139)
                       .+|.+|+|+-...      -..++..+.+++++||.+..
T Consensus       171 -~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  209 (689)
T 3pvc_A          171 -QVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST  209 (689)
T ss_dssp             -CEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred             -ceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence             7999999984322      26788999999999999875

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.86  E-value=0.0094  Score=46.13  Aligned_cols=51  Identities=16%  Similarity=0.217  Sum_probs=40.5

Q ss_pred             EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcc----hHHHHHHHhhcccCCeEEEE
Q 044253           40 INLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDN----YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        40 i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~----~~~~~~~~~~lL~~gG~ii~   98 (139)
                      .++..||+.+.++++.     ..   +||+||+|+  +..+    -..++..+.++++|||+++-
T Consensus       168 L~l~~GDa~~~l~~l~-----~~---~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          168 LKVLLGDARKRIKEVE-----NF---KADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             EEEEESCHHHHGGGCC-----SC---CEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEechHHHHHhhhc-----cc---ceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            5678999999988763     34   799999997  3322    25789999999999999974

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.23  E-value=0.027  Score=46.45  Aligned_cols=57  Identities=5%  Similarity=-0.171  Sum_probs=43.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH-HhhHHhhhcccCCCceeEEEEcCCC
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL-DQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ..++++|+++.+...|+-|+-..|.. ...+.++|.+..- ....    +..   +||+|+.+||.
T Consensus       255 ~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~~~~----~~~---~fD~Il~NPPf  312 (530)
T 3ufb_A          255 SSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLREMG----DKD---RVDVILTNPPF  312 (530)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGGGCC----GGG---CBSEEEECCCS
T ss_pred             hhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchhhhc----ccc---cceEEEecCCC
Confidence            46899999999999999999988884 4678889886531 1110    024   79999999975

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=95.23  E-value=0.045  Score=41.43  Aligned_cols=41  Identities=12%  Similarity=-0.019  Sum_probs=33.2

Q ss_pred             hhhhhhhcc----eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH
Q 044253            5 LESTFFIYF----IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA   50 (139)
Q Consensus         5 ~~~~~~~~~----v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~   50 (139)
                      ...+..+.+    |++||+|+++++.++++.     .++++++++|+.+.
T Consensus        58 ~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           58 GPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             HHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            344444555    999999999999999983     35799999999875

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=95.09  E-value=0.0077  Score=46.62  Aligned_cols=72  Identities=8%  Similarity=-0.046  Sum_probs=52.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---c--hHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---N--YRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~--~~~~~~~   85 (139)
                      ..+++++|+ +.+++.|++      . .+++++.+|+.+   .+       .   +||+|++.....   +  ...+++.
T Consensus       217 ~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~~-------~---~~D~v~~~~vlh~~~d~~~~~~l~~  275 (358)
T 1zg3_A          217 HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK---SI-------P---SADAVLLKWVLHDWNDEQSLKILKN  275 (358)
T ss_dssp             TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT---CC-------C---CCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC---CC-------C---CceEEEEcccccCCCHHHHHHHHHH
Confidence            457899999 788877764      2 359999999875   22       4   699999865322   2  2367888


Q ss_pred             HhhcccC---CeEEEEeCCCC
Q 044253           86 LMTLFKV---GGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~---gG~ii~~~~~~  103 (139)
                      +.+.|+|   ||.+++.+...
T Consensus       276 ~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          276 SKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             HHHHTGGGGGGCEEEEEECEE
T ss_pred             HHHhCCCCCCCcEEEEEEecc
Confidence            8899999   99988765544

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=95.03  E-value=0.022  Score=42.38  Aligned_cols=62  Identities=15%  Similarity=0.087  Sum_probs=43.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      ..+|++||+|+.+++.++++    + ..+++++++|+.+. ++..      ..   .| .|+.+.++.-....+..++
T Consensus        54 ~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~------~~---~~-~vv~NlPy~i~~~il~~ll  116 (249)
T 3ftd_A           54 LKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSL------GK---EL-KVVGNLPYNVASLIIENTV  116 (249)
T ss_dssp             CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGS------CS---SE-EEEEECCTTTHHHHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHc------cC---Cc-EEEEECchhccHHHHHHHH
Confidence            37899999999999999987    2 25799999999875 1111      12   34 7888887654444444444

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=94.94  E-value=0.046  Score=40.71  Aligned_cols=58  Identities=10%  Similarity=0.027  Sum_probs=42.0

Q ss_pred             hcc--eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253           11 IYF--IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus        11 ~~~--v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      +.+  |+++|+|+++++.+++++...   ++++++++|+.+. ++.....   ..   ..|.|+.+.++.
T Consensus        41 ~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~---~~---~~~~vvsNlPY~  101 (252)
T 1qyr_A           41 ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEK---MG---QPLRVFGNLPYN  101 (252)
T ss_dssp             TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHH---HT---SCEEEEEECCTT
T ss_pred             CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcc---cC---CceEEEECCCCC
Confidence            456  999999999999999887542   4799999999874 2322100   02   467888888754

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=94.37  E-value=0.35  Score=30.97  Aligned_cols=79  Identities=11%  Similarity=-0.060  Sum_probs=54.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~~   86 (139)
                      ...+|..+|-++......+..++..|+  .+.....+..+.+..+.     ..   .+|+|++|....   ...++++.+
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~---~~dlii~d~~~~~~~~g~~~~~~l   77 (140)
T 3cg0_A            8 DLPGVLIVEDGRLAAATLRIQLESLGY--DVLGVFDNGEEAVRCAP-----DL---RPDIALVDIMLCGALDGVETAARL   77 (140)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH-----HH---CCSEEEEESSCCSSSCHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHH-----hC---CCCEEEEecCCCCCCCHHHHHHHH
Confidence            456899999999999999999998876  34445777877776553     34   799999996432   334556666


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      ... ..-.++++.
T Consensus        78 ~~~-~~~~ii~ls   89 (140)
T 3cg0_A           78 AAG-CNLPIIFIT   89 (140)
T ss_dssp             HHH-SCCCEEEEE
T ss_pred             HhC-CCCCEEEEe
Confidence            554 333444443

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=94.18  E-value=0.44  Score=32.67  Aligned_cols=79  Identities=14%  Similarity=0.008  Sum_probs=53.2

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHH
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETL   86 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~   86 (139)
                      ....+|..||-++......+..++..|+  .+ ....+..+.+..+.     ..   .+|+|++|...+  +-.++++.+
T Consensus         5 m~~~~iLivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~~~-----~~---~~dlvl~D~~lp~~~g~~~~~~l   73 (184)
T 3rqi_A            5 MSDKNFLVIDDNEVFAGTLARGLERRGY--AV-RQAHNKDEALKLAG-----AE---KFEFITVXLHLGNDSGLSLIAPL   73 (184)
T ss_dssp             --CCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEECSHHHHHHHHT-----TS---CCSEEEECSEETTEESHHHHHHH
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHh-----hC---CCCEEEEeccCCCccHHHHHHHH
Confidence            4456899999999999999999998886  24 56678888876653     35   799999996322  334455555


Q ss_pred             hhcccCCeEEEE
Q 044253           87 MTLFKVGGIVIY   98 (139)
Q Consensus        87 ~~lL~~gG~ii~   98 (139)
                      ...-..--++++
T Consensus        74 ~~~~~~~~ii~l   85 (184)
T 3rqi_A           74 CDLQPDARILVL   85 (184)
T ss_dssp             HHHCTTCEEEEE
T ss_pred             HhcCCCCCEEEE
Confidence            543222334444

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=94.16  E-value=0.63  Score=29.45  Aligned_cols=78  Identities=12%  Similarity=0.011  Sum_probs=52.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..+|-++......++.++..|+.  +. ...+..+.+..+.     ..   ++|+|++|....  ....+++.+.
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~   74 (130)
T 3eod_A            6 VGKQILIVEDEQVFRSLLDSWFSSLGAT--TV-LAADGVDALELLG-----GF---TPDLMICDIAMPRMNGLKLLEHIR   74 (130)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHHHT-----TC---CCSEEEECCC-----CHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhCCce--EE-EeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence            4568999999999999999999998862  33 4678888776653     35   799999997432  2344555555


Q ss_pred             hcccCCeEEEE
Q 044253           88 TLFKVGGIVIY   98 (139)
Q Consensus        88 ~lL~~gG~ii~   98 (139)
                      ..-..--++++
T Consensus        75 ~~~~~~~ii~~   85 (130)
T 3eod_A           75 NRGDQTPVLVI   85 (130)
T ss_dssp             HTTCCCCEEEE
T ss_pred             hcCCCCCEEEE
Confidence            43322334444

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=93.98  E-value=0.67  Score=29.18  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......++.++..|+  .+. ...+..+.+..+.     ..   ++|+|++|....  ....+++.+..
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~l~~   71 (127)
T 3i42_A            3 LQQALIVEDYQAAAETFKELLEMLGF--QAD-YVMSGTDALHAMS-----TR---GYDAVFIDLNLPDTSGLALVKQLRA   71 (127)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHTTE--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             cceEEEEcCCHHHHHHHHHHHHHcCC--CEE-EECCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            35789999999999999999998876  233 4567777766553     35   799999997432  33455666655


Q ss_pred             c
Q 044253           89 L   89 (139)
Q Consensus        89 l   89 (139)
                      .
T Consensus        72 ~   72 (127)
T 3i42_A           72 L   72 (127)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=93.98  E-value=0.75  Score=29.70  Aligned_cols=70  Identities=7%  Similarity=-0.001  Sum_probs=49.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~   87 (139)
                      ...+|..||-++......++.++..|.. .......+..+.+..+.     ..   ++|+|++|.....  ..++++.+.
T Consensus         4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~lr   74 (144)
T 3kht_A            4 RSKRVLVVEDNPDDIALIRRVLDRKDIH-CQLEFVDNGAKALYQVQ-----QA---KYDLIILDIGLPIANGFEVMSAVR   74 (144)
T ss_dssp             -CEEEEEECCCHHHHHHHHHHHHHTTCC-EEEEEESSHHHHHHHHT-----TC---CCSEEEECTTCGGGCHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhcCCC-eeEEEECCHHHHHHHhh-----cC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence            3468999999999999999999998873 22345667777776653     35   7999999975433  344555555


Q ss_pred             h
Q 044253           88 T   88 (139)
Q Consensus        88 ~   88 (139)
                      .
T Consensus        75 ~   75 (144)
T 3kht_A           75 K   75 (144)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=93.97  E-value=0.072  Score=41.78  Aligned_cols=57  Identities=12%  Similarity=0.077  Sum_probs=41.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ..+|+++|+|+++++.|+ ++    ..+++++++++...+...+..    .++.+++|.|++|.+.
T Consensus        82 ~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~----~g~~~~vDgILfDLGV  138 (347)
T 3tka_A           82 EGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAE----RDLIGKIDGILLDLGV  138 (347)
T ss_dssp             TCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHH----TTCTTCEEEEEEECSC
T ss_pred             CCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHh----cCCCCcccEEEECCcc
Confidence            468999999999999995 33    247899999999887544321    1111169999999654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.97  E-value=0.12  Score=36.16  Aligned_cols=76  Identities=12%  Similarity=-0.011  Sum_probs=46.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++..+.+++    .|....+.....+..+.+.+...    ..   .+|+|+....    ...++.+.+.
T Consensus        62 ~G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----~~---~~D~vi~~~g----~~~~~~~~~~  126 (198)
T 1pqw_A           62 IGARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTD----GY---GVDVVLNSLA----GEAIQRGVQI  126 (198)
T ss_dssp             HTCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTT----TC---CEEEEEECCC----THHHHHHHHT
T ss_pred             cCCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHhC----CC---CCeEEEECCc----hHHHHHHHHH
Confidence            46789999999988776653    45421111112233333332211    23   6999996653    2457788899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       127 l~~~G~~v~~g  137 (198)
T 1pqw_A          127 LAPGGRFIELG  137 (198)
T ss_dssp             EEEEEEEEECS
T ss_pred             hccCCEEEEEc
Confidence            99999998643

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=93.95  E-value=0.73  Score=29.54  Aligned_cols=67  Identities=16%  Similarity=0.029  Sum_probs=49.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......++.++..|+.  + ....+..+.+..+.     ..   ++|+|++|....  .-..+++.+..
T Consensus         6 ~~~iLivdd~~~~~~~l~~~l~~~g~~--v-~~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~~   74 (140)
T 3grc_A            6 RPRILICEDDPDIARLLNLMLEKGGFD--S-DMVHSAAQALEQVA-----RR---PYAAMTVDLNLPDQDGVSLIRALRR   74 (140)
T ss_dssp             CSEEEEECSCHHHHHHHHHHHHHTTCE--E-EEECSHHHHHHHHH-----HS---CCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred             CCCEEEEcCCHHHHHHHHHHHHHCCCe--E-EEECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            457999999999999999999988863  3 45667777776653     35   899999997433  33455666554

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=93.92  E-value=0.58  Score=29.90  Aligned_cols=77  Identities=12%  Similarity=0.070  Sum_probs=52.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNYR   83 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~~   83 (139)
                      ..+|..+|-++......++.++..|+  .+. ...+..+.+..+.     ..   .+|+|++|....       ....++
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~d~~~~~~~~~~~~g~~~~   71 (140)
T 2qr3_A            3 LGTIIIVDDNKGVLTAVQLLLKNHFS--KVI-TLSSPVSLSTVLR-----EE---NPEVVLLDMNFTSGINNGNEGLFWL   71 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTTSS--EEE-EECCHHHHHHHHH-----HS---CEEEEEEETTTTC-----CCHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHH-----cC---CCCEEEEeCCcCCCCCCCccHHHHH
Confidence            45789999999999999999987775  243 5667777766553     35   799999997533       334455


Q ss_pred             HHHhhcccCCeEEEE
Q 044253           84 ETLMTLFKVGGIVIY   98 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~   98 (139)
                      +.+......-.++++
T Consensus        72 ~~l~~~~~~~~ii~l   86 (140)
T 2qr3_A           72 HEIKRQYRDLPVVLF   86 (140)
T ss_dssp             HHHHHHCTTCCEEEE
T ss_pred             HHHHhhCcCCCEEEE
Confidence            655554333344444

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=93.86  E-value=0.49  Score=30.67  Aligned_cols=79  Identities=9%  Similarity=0.044  Sum_probs=53.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..||-++......+..+...|+  .+. ...+..+.+..+.     ..   .+|+|++|....  ....+++.+.
T Consensus         7 ~~~~iLivd~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l~   75 (147)
T 2zay_A            7 KWWRIMLVDTQLPALAASISALSQEGF--DII-QCGNAIEAVPVAV-----KT---HPHLIITEANMPKISGMDLFNSLK   75 (147)
T ss_dssp             -CEEEEEECTTGGGGHHHHHHHHHHTE--EEE-EESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHH-----cC---CCCEEEEcCCCCCCCHHHHHHHHH
Confidence            456899999999999999999998776  344 5667777766553     34   799999997433  2344566655


Q ss_pred             h--cccCCeEEEEe
Q 044253           88 T--LFKVGGIVIYD   99 (139)
Q Consensus        88 ~--lL~~gG~ii~~   99 (139)
                      .  ....--++++.
T Consensus        76 ~~~~~~~~pii~ls   89 (147)
T 2zay_A           76 KNPQTASIPVIALS   89 (147)
T ss_dssp             TSTTTTTSCEEEEE
T ss_pred             cCcccCCCCEEEEe
Confidence            4  23333445543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.84  E-value=0.14  Score=39.03  Aligned_cols=76  Identities=11%  Similarity=0.116  Sum_probs=50.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++..+.+++    .|...-+.....+..+.+.+.      ..   .+|.||.....   ...++.+.+.
T Consensus       189 ~Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------~g---~~d~vid~~g~---~~~~~~~~~~  252 (340)
T 3s2e_A          189 MGLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------IG---GAHGVLVTAVS---PKAFSQAIGM  252 (340)
T ss_dssp             TTCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------HS---SEEEEEESSCC---HHHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------CC---CCCEEEEeCCC---HHHHHHHHHH
Confidence            46799999999999888765    565322222223444444432      35   79999876542   3467788899


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+++|.++.-..
T Consensus       253 l~~~G~iv~~G~  264 (340)
T 3s2e_A          253 VRRGGTIALNGL  264 (340)
T ss_dssp             EEEEEEEEECSC
T ss_pred             hccCCEEEEeCC
Confidence            999999987543

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=93.31  E-value=0.21  Score=33.49  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=48.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~   87 (139)
                      .+|..||=++......++.++..|+.  ......|+.+.+..+.     ..   +||+|++|-..+.  -.++++.+.
T Consensus        13 ~rILiVDD~~~~r~~l~~~L~~~G~~--~v~~a~~g~~al~~~~-----~~---~~DlillD~~MP~mdG~el~~~ir   80 (134)
T 3to5_A           13 MKILIVDDFSTMRRIVKNLLRDLGFN--NTQEADDGLTALPMLK-----KG---DFDFVVTDWNMPGMQGIDLLKNIR   80 (134)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEECCHHHHHHHHH-----hC---CCCEEEEcCCCCCCCHHHHHHHHH
Confidence            47999999999999999999999974  2334578888876654     35   8999999975433  334555554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=93.29  E-value=0.32  Score=40.67  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=40.6

Q ss_pred             cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--c----chHHHHHHHhhcccCCeEEEE
Q 044253           39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--D----NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~----~~~~~~~~~~~lL~~gG~ii~   98 (139)
                      .+++..||+.+.++++....  ..   .||.||+|+-.  .    .-..++..+.+++++||++..
T Consensus       157 ~l~l~~gd~~~~l~~~~~~~--~~---~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  217 (676)
T 3ps9_A          157 TLDLWFGDINELTSQLDDSL--NQ---KVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  217 (676)
T ss_dssp             EEEEEESCHHHHGGGBCGGG--TT---CEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEecCCHHHHHHhccccc--CC---cccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence            46688999999988762110  14   79999999732  1    135688899999999999875

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=93.26  E-value=0.85  Score=28.34  Aligned_cols=76  Identities=14%  Similarity=0.035  Sum_probs=52.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~~~~   88 (139)
                      .+|..+|-++......++.++..|+  ++. ...+..+.+..+.     ..   .+|+|++|....   ....+++.+..
T Consensus         6 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvi~d~~~~~~~~g~~~~~~l~~   74 (127)
T 2gkg_A            6 KKILIVESDTALSATLRSALEGRGF--TVD-ETTDGKGSVEQIR-----RD---RPDLVVLAVDLSAGQNGYLICGKLKK   74 (127)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHHTC--EEE-EECCHHHHHHHHH-----HH---CCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCc--eEE-EecCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence            4799999999999999999998886  343 5667777766553     34   799999997543   33455666655


Q ss_pred             c--ccCCeEEEE
Q 044253           89 L--FKVGGIVIY   98 (139)
Q Consensus        89 l--L~~gG~ii~   98 (139)
                      .  ...-.++++
T Consensus        75 ~~~~~~~~ii~~   86 (127)
T 2gkg_A           75 DDDLKNVPIVII   86 (127)
T ss_dssp             STTTTTSCEEEE
T ss_pred             CccccCCCEEEE
Confidence            4  233345554

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=93.24  E-value=0.98  Score=28.93  Aligned_cols=75  Identities=12%  Similarity=-0.064  Sum_probs=49.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..||-++......+..++..|.. .......+..+.+..+........   .+|+|++|....  .-..+++.+.
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~-~~v~~~~~~~~a~~~l~~~~~~~~---~~dlvi~D~~l~~~~g~~~~~~l~   83 (146)
T 3ilh_A            8 KIDSVLLIDDDDIVNFLNTTIIRMTHRV-EEIQSVTSGNAAINKLNELYAAGR---WPSIICIDINMPGINGWELIDLFK   83 (146)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHTTCCE-EEEEEESSHHHHHHHHHHHHTSSC---CCSEEEEESSCSSSCHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHhcCCC-eeeeecCCHHHHHHHHHHhhccCC---CCCEEEEcCCCCCCCHHHHHHHHH
Confidence            4568999999999999999999887752 123355677777665532000015   799999997433  3344566655


Q ss_pred             h
Q 044253           88 T   88 (139)
Q Consensus        88 ~   88 (139)
                      .
T Consensus        84 ~   84 (146)
T 3ilh_A           84 Q   84 (146)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=93.23  E-value=0.81  Score=29.37  Aligned_cols=78  Identities=9%  Similarity=-0.087  Sum_probs=53.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCc-c--hHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKD-N--YRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~-~--~~~~~~~   85 (139)
                      ..+|..||-++......+..++. .|+  .+. ...+..+.+..+.     . .   .+|+|++|.... .  ...+++.
T Consensus         4 ~~~ilivdd~~~~~~~l~~~L~~~~~~--~v~-~~~~~~~a~~~l~-----~~~---~~dlvi~D~~l~~~~~g~~~~~~   72 (140)
T 3lua_A            4 DGTVLLIDYFEYEREKTKIIFDNIGEY--DFI-EVENLKKFYSIFK-----DLD---SITLIIMDIAFPVEKEGLEVLSA   72 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHHCCC--EEE-EECSHHHHHTTTT-----TCC---CCSEEEECSCSSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhccCc--cEE-EECCHHHHHHHHh-----cCC---CCcEEEEeCCCCCCCcHHHHHHH
Confidence            45799999999999999999998 776  344 6677888776553     4 5   899999998654 3  2344555


Q ss_pred             Hhh--cccCCeEEEEe
Q 044253           86 LMT--LFKVGGIVIYD   99 (139)
Q Consensus        86 ~~~--lL~~gG~ii~~   99 (139)
                      +..  ....--++++.
T Consensus        73 l~~~~~~~~~~ii~ls   88 (140)
T 3lua_A           73 IRNNSRTANTPVIIAT   88 (140)
T ss_dssp             HHHSGGGTTCCEEEEE
T ss_pred             HHhCcccCCCCEEEEe
Confidence            554  33333444443

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=93.21  E-value=0.88  Score=29.70  Aligned_cols=79  Identities=10%  Similarity=-0.024  Sum_probs=53.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..+|-++...+..++.++..|.. .+.....+..+.+..+.     ..   .+|+|++|....  ...++++.+.
T Consensus        14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l~   84 (152)
T 3eul_A           14 EKVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEADDGAAALELIK-----AH---LPDVALLDYRMPGMDGAQVAAAVR   84 (152)
T ss_dssp             CCEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEESSHHHHHHHHH-----HH---CCSEEEEETTCSSSCHHHHHHHHH
T ss_pred             ceEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence            4568999999999999999999988742 23335677877776654     35   799999996432  3345566655


Q ss_pred             hcccCCe-EEEE
Q 044253           88 TLFKVGG-IVIY   98 (139)
Q Consensus        88 ~lL~~gG-~ii~   98 (139)
                      .. .+.. ++++
T Consensus        85 ~~-~~~~~ii~~   95 (152)
T 3eul_A           85 SY-ELPTRVLLI   95 (152)
T ss_dssp             HT-TCSCEEEEE
T ss_pred             hc-CCCCeEEEE
Confidence            44 3443 4444

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=93.19  E-value=0.99  Score=29.52  Aligned_cols=78  Identities=15%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..||-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|....  ....+++.+.
T Consensus         6 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~   74 (154)
T 2rjn_A            6 KNYTVMLVDDEQPILNSLKRLIKRLGC--NII-TFTSPLDALEALK-----GT---SVQLVISDMRMPEMGGEVFLEQVA   74 (154)
T ss_dssp             SCCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESCHHHHHHHHT-----TS---CCSEEEEESSCSSSCHHHHHHHHH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence            356799999999999999999998775  344 5677777776553     35   799999997433  2344555555


Q ss_pred             hcccCCeEEEE
Q 044253           88 TLFKVGGIVIY   98 (139)
Q Consensus        88 ~lL~~gG~ii~   98 (139)
                      ..-..--++++
T Consensus        75 ~~~~~~~ii~l   85 (154)
T 2rjn_A           75 KSYPDIERVVI   85 (154)
T ss_dssp             HHCTTSEEEEE
T ss_pred             HhCCCCcEEEE
Confidence            43322334444

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=93.11  E-value=0.7  Score=29.32  Aligned_cols=76  Identities=18%  Similarity=0.138  Sum_probs=50.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..+|-++......++.++..|+  .+.....+..+.+..+.     ..   ++|+|++|....  ....+++.+...
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~---~~dlii~d~~l~~~~g~~~~~~l~~~   71 (134)
T 3f6c_A            2 LNAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TL---KPDIVIIDVDIPGVNGIQVLETLRKR   71 (134)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHH-----HH---CCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred             eEEEEEcCCHHHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHH-----hc---CCCEEEEecCCCCCChHHHHHHHHhc
Confidence            3688999999999999999998874  23334556666655443     35   799999997533  334556665543


Q ss_pred             ccCCe-EEEE
Q 044253           90 FKVGG-IVIY   98 (139)
Q Consensus        90 L~~gG-~ii~   98 (139)
                       .++. ++++
T Consensus        72 -~~~~~ii~~   80 (134)
T 3f6c_A           72 -QYSGIIIIV   80 (134)
T ss_dssp             -TCCSEEEEE
T ss_pred             -CCCCeEEEE
Confidence             3343 4444

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=93.05  E-value=1.2  Score=29.32  Aligned_cols=81  Identities=11%  Similarity=0.032  Sum_probs=53.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||-++......++.++..|+  .+.....+..+.+..+...   ..   .+|+|++|....  ....+++.+..
T Consensus        36 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~~~---~~---~~dliilD~~l~~~~g~~~~~~lr~  107 (157)
T 3hzh_A           36 PFNVLIVDDSVFTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYKNH---YP---NIDIVTLXITMPKMDGITCLSNIME  107 (157)
T ss_dssp             ECEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH---GG---GCCEEEECSSCSSSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhc---CC---CCCEEEEeccCCCccHHHHHHHHHh
Confidence            35799999999999999999998876  3433677888777665322   23   589999997433  33445555554


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .-..--++++.
T Consensus       108 ~~~~~~ii~ls  118 (157)
T 3hzh_A          108 FDKNARVIMIS  118 (157)
T ss_dssp             HCTTCCEEEEE
T ss_pred             hCCCCcEEEEe
Confidence            33223344443

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=93.05  E-value=0.79  Score=30.05  Aligned_cols=77  Identities=12%  Similarity=0.088  Sum_probs=52.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||-++......++.++..|+  .+. ...+..+.+..+.     ..   .+|+|++|....  ....+++.+..
T Consensus        14 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~   82 (153)
T 3hv2_A           14 RPEILLVDSQEVILQRLQQLLSPLPY--TLH-FARDATQALQLLA-----SR---EVDLVISAAHLPQMDGPTLLARIHQ   82 (153)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTSSC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHhcccCc--EEE-EECCHHHHHHHHH-----cC---CCCEEEEeCCCCcCcHHHHHHHHHh
Confidence            45799999999999999999988775  233 5667777776653     35   899999997433  33455665555


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      .-..--+|++
T Consensus        83 ~~~~~~ii~~   92 (153)
T 3hv2_A           83 QYPSTTRILL   92 (153)
T ss_dssp             HCTTSEEEEE
T ss_pred             HCCCCeEEEE
Confidence            3323334444

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=93.04  E-value=0.96  Score=28.04  Aligned_cols=67  Identities=12%  Similarity=0.036  Sum_probs=47.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      .+|..+|-++......+..++..|+  .+.....+..+.+..+.     ..   ++|+|++|.....  -..+++.+.+
T Consensus         3 ~~ilivdd~~~~~~~l~~~l~~~g~--~vv~~~~~~~~a~~~~~-----~~---~~dlil~D~~l~~~~g~~~~~~l~~   71 (120)
T 1tmy_A            3 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----EL---KPDIVTMDITMPEMNGIDAIKEIMK   71 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HH---CCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhhcCc--EEEEEECCHHHHHHHHH-----hc---CCCEEEEeCCCCCCcHHHHHHHHHh
Confidence            4688999999999999999987776  23445677777776553     34   7999999975432  2344555543

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=93.02  E-value=1.1  Score=28.71  Aligned_cols=86  Identities=16%  Similarity=0.024  Sum_probs=54.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhc---c--cCCCceeEEEEcCCCc--chHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKI---H--FFFENFDYAFVDAHKD--NYRNY   82 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~---~--~~~~~fD~If~D~~~~--~~~~~   82 (139)
                      ...+|..+|-++......++.++..|....+ ....+..+.+..+......   .  .   .+|+|++|....  ....+
T Consensus         5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v-~~~~~~~~al~~l~~~~~~~~~~~~~---~~dlvi~D~~l~~~~g~~~   80 (149)
T 1k66_A            5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPI-YRCITGDQALDFLYQTGSYCNPDIAP---RPAVILLDLNLPGTDGREV   80 (149)
T ss_dssp             TTSCEEEECCCHHHHHHHHHHHHHTTBCSCE-EEECSHHHHHHHHHTCCSSSCGGGCC---CCSEEEECSCCSSSCHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCCCceE-EEECCHHHHHHHHHhcccccCcccCC---CCcEEEEECCCCCCCHHHH
Confidence            4568999999999999999999998863233 3556677776655310000   0  4   899999997543  23445


Q ss_pred             HHHHhhcc--cCCeEEEEe
Q 044253           83 RETLMTLF--KVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~~lL--~~gG~ii~~   99 (139)
                      ++.+...-  ..-.++++.
T Consensus        81 ~~~l~~~~~~~~~~ii~~t   99 (149)
T 1k66_A           81 LQEIKQDEVLKKIPVVIMT   99 (149)
T ss_dssp             HHHHTTSTTGGGSCEEEEE
T ss_pred             HHHHHhCcccCCCeEEEEe
Confidence            55555432  233455553

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=92.97  E-value=0.41  Score=36.41  Aligned_cols=78  Identities=17%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|+++|.+++.++.+++    .|...-+.....|..+.+.++..    ..   .+|.++.+...   ...+......
T Consensus       187 ~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~----g~---g~d~~~~~~~~---~~~~~~~~~~  252 (348)
T 4eez_A          187 FGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITG----GL---GVQSAIVCAVA---RIAFEQAVAS  252 (348)
T ss_dssp             SCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTT----SS---CEEEEEECCSC---HHHHHHHHHT
T ss_pred             CCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcC----CC---CceEEEEeccC---cchhheehee
Confidence            46799999999998877764    56543455555666665555431    24   68888887643   3457778899


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+++|.++.-..
T Consensus       253 l~~~G~~v~~g~  264 (348)
T 4eez_A          253 LKPMGKMVAVAV  264 (348)
T ss_dssp             EEEEEEEEECCC
T ss_pred             ecCCceEEEEec
Confidence            999999987543

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=92.61  E-value=1.4  Score=28.73  Aligned_cols=79  Identities=11%  Similarity=0.028  Sum_probs=52.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      +.+|..||-++...+..+..++..+.. .......+..+.+..+.     ..   .+|+|++|....  ....+++.+..
T Consensus        20 m~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~l~~   90 (150)
T 4e7p_A           20 HMKVLVAEDQSMLRDAMCQLLTLQPDV-ESVLQAKNGQEAIQLLE-----KE---SVDIAILDVEMPVKTGLEVLEWIRS   90 (150)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHT-----TS---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred             ccEEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHhh-----cc---CCCEEEEeCCCCCCcHHHHHHHHHH
Confidence            457999999999999999999876531 23345667777776653     35   799999997533  33455666655


Q ss_pred             cccCCe-EEEEe
Q 044253           89 LFKVGG-IVIYD   99 (139)
Q Consensus        89 lL~~gG-~ii~~   99 (139)
                      . .++. ++++.
T Consensus        91 ~-~~~~~ii~ls  101 (150)
T 4e7p_A           91 E-KLETKVVVVT  101 (150)
T ss_dssp             T-TCSCEEEEEE
T ss_pred             h-CCCCeEEEEe
Confidence            4 3444 44443

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=92.48  E-value=1.3  Score=28.33  Aligned_cols=79  Identities=11%  Similarity=0.075  Sum_probs=51.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......+..++..|+  .+ ....+..+.+..+...   ..   .+|+|++|....  ....+++.+..
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~g~--~v-~~~~~~~~a~~~~~~~---~~---~~dlvi~d~~l~~~~g~~~~~~l~~   73 (143)
T 3jte_A            3 LAKILVIDDESTILQNIKFLLEIDGN--EV-LTASSSTEGLRIFTEN---CN---SIDVVITDMKMPKLSGMDILREIKK   73 (143)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEESSHHHHHHHHHHT---TT---TCCEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCc--eE-EEeCCHHHHHHHHHhC---CC---CCCEEEEeCCCCCCcHHHHHHHHHH
Confidence            46799999999999999999998875  23 3566777776555311   24   799999997433  23445665554


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      .-..-.++++
T Consensus        74 ~~~~~~ii~l   83 (143)
T 3jte_A           74 ITPHMAVIIL   83 (143)
T ss_dssp             HCTTCEEEEE
T ss_pred             hCCCCeEEEE
Confidence            4322334444

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=92.36  E-value=0.26  Score=37.91  Aligned_cols=77  Identities=13%  Similarity=-0.032  Sum_probs=50.2

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+++|++++.+++.++.+++    .|...-+.....+..+.+.+..     ..   .+|+||-.....    .++.+.+
T Consensus       190 ~~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~-----~~---g~Dvvid~~g~~----~~~~~~~  253 (353)
T 4dup_A          190 AFGAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET-----GQ---GVDIILDMIGAA----YFERNIA  253 (353)
T ss_dssp             HTTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH-----SS---CEEEEEESCCGG----GHHHHHH
T ss_pred             HcCCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh-----CC---CceEEEECCCHH----HHHHHHH
Confidence            347799999999999988875    3543112222334444444332     24   799988765532    4667788


Q ss_pred             cccCCeEEEEeCC
Q 044253           89 LFKVGGIVIYDNT  101 (139)
Q Consensus        89 lL~~gG~ii~~~~  101 (139)
                      .|+++|.++.-..
T Consensus       254 ~l~~~G~iv~~g~  266 (353)
T 4dup_A          254 SLAKDGCLSIIAF  266 (353)
T ss_dssp             TEEEEEEEEECCC
T ss_pred             HhccCCEEEEEEe
Confidence            9999999986443

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=92.33  E-value=1  Score=29.38  Aligned_cols=79  Identities=13%  Similarity=-0.008  Sum_probs=52.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      +.+|..+|-++......+..++. .|+  .+.....+..+.+..+.     ..   .+|+|++|....  ....+++.+.
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~l~   74 (153)
T 3cz5_A            5 TARIMLVDDHPIVREGYRRLIERRPGY--AVVAEAADAGEAYRLYR-----ET---TPDIVVMDLTLPGPGGIEATRHIR   74 (153)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHH-----TT---CCSEEEECSCCSSSCHHHHHHHHH
T ss_pred             ccEEEEECCcHHHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence            46799999999999999998876 453  23335778887776553     35   799999997533  2344556555


Q ss_pred             hcccCCeEEEEe
Q 044253           88 TLFKVGGIVIYD   99 (139)
Q Consensus        88 ~lL~~gG~ii~~   99 (139)
                      ..-..-.++++.
T Consensus        75 ~~~~~~~ii~ls   86 (153)
T 3cz5_A           75 QWDGAARILIFT   86 (153)
T ss_dssp             HHCTTCCEEEEE
T ss_pred             HhCCCCeEEEEE
Confidence            443233345443

>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B

Probab=92.30  E-value=1.4  Score=28.15  Aligned_cols=83  Identities=11%  Similarity=0.060  Sum_probs=50.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l   89 (139)
                      .+|..||-++......+..++..|+.  ......+..+.+..+........   .||+|++|...+.  -..+++.+.+.
T Consensus         3 ~~ILivdD~~~~~~~l~~~L~~~g~~--~v~~~~~~~~al~~~~~~~~~~~---~~dlvllD~~mp~~~G~~~~~~lr~~   77 (133)
T 2r25_B            3 VKILVVEDNHVNQEVIKRMLNLEGIE--NIELACDGQEAFDKVKELTSKGE---NYNMIFMDVQMPKVDGLLSTKMIRRD   77 (133)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHHHHHHHTC---CCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHHHHHhcCC---CCCEEEEeCCCCCCChHHHHHHHHhh
Confidence            46889999999999999999887753  23345666666554421000015   7999999975432  23445555432


Q ss_pred             ccCC-eEEEEe
Q 044253           90 FKVG-GIVIYD   99 (139)
Q Consensus        90 L~~g-G~ii~~   99 (139)
                      ..+. .++++.
T Consensus        78 ~~~~~~ii~lt   88 (133)
T 2r25_B           78 LGYTSPIVALT   88 (133)
T ss_dssp             SCCCSCEEEEE
T ss_pred             cCCCCCEEEEE
Confidence            2223 345543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.19  E-value=0.43  Score=36.86  Aligned_cols=74  Identities=11%  Similarity=-0.005  Sum_probs=48.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|.. .+--...+..+.+.++.     ..   .+|+||-...   ....++.+.+.
T Consensus       196 ~g~~Vi~~~~~~~~~~~~~~----lGad-~vi~~~~~~~~~v~~~~-----~~---g~Dvvid~~g---~~~~~~~~~~~  259 (363)
T 4dvj_A          196 TDLTVIATASRPETQEWVKS----LGAH-HVIDHSKPLAAEVAALG-----LG---APAFVFSTTH---TDKHAAEIADL  259 (363)
T ss_dssp             CCSEEEEECSSHHHHHHHHH----TTCS-EEECTTSCHHHHHHTTC-----SC---CEEEEEECSC---HHHHHHHHHHH
T ss_pred             cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCCHHHHHHHhc-----CC---CceEEEECCC---chhhHHHHHHH
Confidence            46799999999998888865    5653 22111223434443331     34   7998876443   23467788899


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+++|.++.-
T Consensus       260 l~~~G~iv~~  269 (363)
T 4dvj_A          260 IAPQGRFCLI  269 (363)
T ss_dssp             SCTTCEEEEC
T ss_pred             hcCCCEEEEE
Confidence            9999999864

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.16  E-value=0.2  Score=38.07  Aligned_cols=76  Identities=14%  Similarity=0.094  Sum_probs=49.0

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-....    ..++.+.+.
T Consensus       172 ~Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~~~----~~---g~D~vid~~g~----~~~~~~~~~  236 (334)
T 3qwb_A          172 KGAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKFTN----GK---GVDASFDSVGK----DTFEISLAA  236 (334)
T ss_dssp             TTCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHTT----TS---CEEEEEECCGG----GGHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHHhC----CC---CceEEEECCCh----HHHHHHHHH
Confidence            46799999999998887765    45421122222344444443321    24   69999866543    346778889


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       237 l~~~G~iv~~G  247 (334)
T 3qwb_A          237 LKRKGVFVSFG  247 (334)
T ss_dssp             EEEEEEEEECC
T ss_pred             hccCCEEEEEc
Confidence            99999998744

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.15  E-value=0.23  Score=37.69  Aligned_cols=77  Identities=9%  Similarity=-0.008  Sum_probs=49.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-....    ..++.+.+.
T Consensus       164 ~Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~~----~~---g~Dvvid~~g~----~~~~~~~~~  228 (325)
T 3jyn_A          164 LGAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELTD----GK---KCPVVYDGVGQ----DTWLTSLDS  228 (325)
T ss_dssp             HTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TC---CEEEEEESSCG----GGHHHHHTT
T ss_pred             CCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHhC----CC---CceEEEECCCh----HHHHHHHHH
Confidence            56799999999999888875    35421122222344444433321    24   79998866543    346678899


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+++|.++.-..
T Consensus       229 l~~~G~iv~~g~  240 (325)
T 3jyn_A          229 VAPRGLVVSFGN  240 (325)
T ss_dssp             EEEEEEEEECCC
T ss_pred             hcCCCEEEEEec
Confidence            999999987543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.14  E-value=0.41  Score=36.92  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=49.1

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .++ +|+++|.+++.++.+++    .|...-+.....+..+.+.+..     ..   .+|+||--...   ...++.+.+
T Consensus       213 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~-----~g---g~D~vid~~g~---~~~~~~~~~  277 (371)
T 1f8f_A          213 CGASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT-----DG---GVNFALESTGS---PEILKQGVD  277 (371)
T ss_dssp             HTCSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TS---CEEEEEECSCC---HHHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc-----CC---CCcEEEECCCC---HHHHHHHHH
Confidence            355 69999999999988865    3542112222234444444332     24   69999865432   345778889


Q ss_pred             cccCCeEEEEeCC
Q 044253           89 LFKVGGIVIYDNT  101 (139)
Q Consensus        89 lL~~gG~ii~~~~  101 (139)
                      .|+++|.++.-..
T Consensus       278 ~l~~~G~iv~~G~  290 (371)
T 1f8f_A          278 ALGILGKIAVVGA  290 (371)
T ss_dssp             TEEEEEEEEECCC
T ss_pred             HHhcCCEEEEeCC
Confidence            9999999987543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.14  E-value=0.31  Score=37.62  Aligned_cols=75  Identities=15%  Similarity=0.041  Sum_probs=48.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+..     ..   .+|+||-....    ..++.+.+.
T Consensus       187 ~Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~-----~~---g~D~vid~~g~----~~~~~~~~~  250 (362)
T 2c0c_A          187 AKCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQEY-----PE---GVDVVYESVGG----AMFDLAVDA  250 (362)
T ss_dssp             TTCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHC-----TT---CEEEEEECSCT----HHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHhc-----CC---CCCEEEECCCH----HHHHHHHHH
Confidence            46789999999988888765    4543111111234444443321     24   69999866542    367788899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       251 l~~~G~iv~~g  261 (362)
T 2c0c_A          251 LATKGRLIVIG  261 (362)
T ss_dssp             EEEEEEEEECC
T ss_pred             HhcCCEEEEEe
Confidence            99999998643

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=92.00  E-value=1.6  Score=28.02  Aligned_cols=67  Identities=10%  Similarity=0.016  Sum_probs=48.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||-++......+..++..|+.  + ....+..+.+..+.     ..   .+|+|++|....  +-.++++.+..
T Consensus         4 ~~~iLivdd~~~~~~~l~~~L~~~g~~--v-~~~~~~~~al~~~~-----~~---~~dlvl~D~~lp~~~g~~~~~~lr~   72 (136)
T 3t6k_A            4 PHTLLIVDDDDTVAEMLELVLRGAGYE--V-RRAASGEEALQQIY-----KN---LPDALICDVLLPGIDGYTLCKRVRQ   72 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCE--E-EEeCCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHc
Confidence            457899999999999999999988862  3 35677887776653     35   799999997433  23445555543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=91.99  E-value=0.48  Score=36.10  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=50.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      +.+|+++|.+++..+.+++    .|.. .+--...+..+.+.++..    ..   .+|+||--...   ...++.+.+.|
T Consensus       196 ~~~Vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~v~~~t~----g~---g~d~v~d~~G~---~~~~~~~~~~l  260 (345)
T 3jv7_A          196 AARVIAVDLDDDRLALARE----VGAD-AAVKSGAGAADAIRELTG----GQ---GATAVFDFVGA---QSTIDTAQQVV  260 (345)
T ss_dssp             CCEEEEEESCHHHHHHHHH----TTCS-EEEECSTTHHHHHHHHHG----GG---CEEEEEESSCC---HHHHHHHHHHE
T ss_pred             CCEEEEEcCCHHHHHHHHH----cCCC-EEEcCCCcHHHHHHHHhC----CC---CCeEEEECCCC---HHHHHHHHHHH
Confidence            6799999999999988865    5653 222122344444444321    34   79998865442   34677888999


Q ss_pred             cCCeEEEEeCC
Q 044253           91 KVGGIVIYDNT  101 (139)
Q Consensus        91 ~~gG~ii~~~~  101 (139)
                      +++|.++.-..
T Consensus       261 ~~~G~iv~~G~  271 (345)
T 3jv7_A          261 AVDGHISVVGI  271 (345)
T ss_dssp             EEEEEEEECSC
T ss_pred             hcCCEEEEECC
Confidence            99999987544

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=91.98  E-value=1.5  Score=27.86  Aligned_cols=69  Identities=12%  Similarity=0.032  Sum_probs=48.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~   86 (139)
                      ...+|..+|-++......+..++. .|+.  +.....+..+.+..+.     ..   .+|+|++|....  ....+++.+
T Consensus         7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~--~v~~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l   76 (143)
T 3cnb_A            7 NDFSILIIEDDKEFADMLTQFLENLFPYA--KIKIAYNPFDAGDLLH-----TV---KPDVVMLDLMMVGMDGFSICHRI   76 (143)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHHCTTC--EEEEECSHHHHHHHHH-----HT---CCSEEEEETTCTTSCHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHHHhccCcc--EEEEECCHHHHHHHHH-----hc---CCCEEEEecccCCCcHHHHHHHH
Confidence            356899999999999999999998 7763  3445667777766553     35   799999997533  234456666


Q ss_pred             hh
Q 044253           87 MT   88 (139)
Q Consensus        87 ~~   88 (139)
                      ..
T Consensus        77 ~~   78 (143)
T 3cnb_A           77 KS   78 (143)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*

Probab=91.97  E-value=1.2  Score=28.15  Aligned_cols=77  Identities=13%  Similarity=0.027  Sum_probs=49.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      .+|..+|-++......+..+... |+  .+.....+..+.+..+.     ..   ++|+|++|....  +-.++++.+..
T Consensus         3 ~~ilivdd~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~a~~~~~-----~~---~~dlvllD~~l~~~~g~~~~~~l~~   72 (130)
T 1dz3_A            3 IKVCIADDNRELVSLLDEYISSQPDM--EVIGTAYNGQDCLQMLE-----EK---RPDILLLDIIMPHLDGLAVLERIRA   72 (130)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCCHHHHHHHHHh
Confidence            46889999999999999988865 32  22335677777776553     24   799999997543  23445555554


Q ss_pred             cccCCe-EEEE
Q 044253           89 LFKVGG-IVIY   98 (139)
Q Consensus        89 lL~~gG-~ii~   98 (139)
                      ...+.. ++++
T Consensus        73 ~~~~~~~ii~l   83 (130)
T 1dz3_A           73 GFEHQPNVIML   83 (130)
T ss_dssp             HCSSCCEEEEE
T ss_pred             cCCCCCcEEEE
Confidence            323444 3444

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=91.87  E-value=1.6  Score=27.75  Aligned_cols=67  Identities=12%  Similarity=0.099  Sum_probs=47.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|....  .-..+++.+.+
T Consensus         3 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~   71 (132)
T 3crn_A            3 LKRILIVDDDTAILDSTKQILEFEGY--EVE-IAATAGEGLAKIE-----NE---FFNLALFXIKLPDMEGTELLEKAHK   71 (132)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEECSBCSSSBHHHHHHHHHH
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHHCCc--eEE-EeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCchHHHHHHHHh
Confidence            35789999999999999999988776  344 6677777776553     35   799999996433  23345555543

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=91.79  E-value=0.99  Score=28.90  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----hHHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----YRNYRETL   86 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----~~~~~~~~   86 (139)
                      ..+|..||-++......++.++..|+  .+. ...+..+.+..+.     ..   ++|+|++|.....    ..++++.+
T Consensus         6 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~D~~l~~~~~~g~~~~~~l   74 (136)
T 3kto_A            6 HPIIYLVDHQKDARAALSKLLSPLDV--TIQ-CFASAESFMRQQI-----SD---DAIGMIIEAHLEDKKDSGIELLETL   74 (136)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHTTSSS--EEE-EESSHHHHTTSCC-----CT---TEEEEEEETTGGGBTTHHHHHHHHH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHh-----cc---CCCEEEEeCcCCCCCccHHHHHHHH
Confidence            45899999999999999999988776  344 5667777765542     34   7999999976443    23455555


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      ...-..-.++++.
T Consensus        75 ~~~~~~~~ii~~s   87 (136)
T 3kto_A           75 VKRGFHLPTIVMA   87 (136)
T ss_dssp             HHTTCCCCEEEEE
T ss_pred             HhCCCCCCEEEEE
Confidence            5433223344443

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=91.71  E-value=1.6  Score=27.48  Aligned_cols=78  Identities=10%  Similarity=0.007  Sum_probs=52.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..+|-++......++.++..|+  .+. ...+..+.+..+.     ..   ++|+|++|....  ....+++.+.
T Consensus         5 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l~   73 (132)
T 3lte_A            5 QSKRILVVDDDQAMAAAIERVLKRDHW--QVE-IAHNGFDAGIKLS-----TF---EPAIMTLDLSMPKLDGLDVIRSLR   73 (132)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HT---CCSEEEEESCBTTBCHHHHHHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHH-----hc---CCCEEEEecCCCCCCHHHHHHHHH
Confidence            346899999999999999999998776  243 5667777766553     35   799999997533  2344555555


Q ss_pred             hccc-CCeEEEE
Q 044253           88 TLFK-VGGIVIY   98 (139)
Q Consensus        88 ~lL~-~gG~ii~   98 (139)
                      ..-. +.-.+++
T Consensus        74 ~~~~~~~~~ii~   85 (132)
T 3lte_A           74 QNKVANQPKILV   85 (132)
T ss_dssp             TTTCSSCCEEEE
T ss_pred             hcCccCCCeEEE
Confidence            4321 3444544

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=91.49  E-value=1.8  Score=27.67  Aligned_cols=76  Identities=16%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--HHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--RNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--~~~~~~~~~   88 (139)
                      ..+|..+|-++......++.++..|+  .+. ...+..+.+..+.     ..   .+|+|++|. ....  ..+++.+..
T Consensus         4 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~d~-~~~~~g~~~~~~l~~   71 (142)
T 2qxy_A            4 TPTVMVVDESRITFLAVKNALEKDGF--NVI-WAKNEQEAFTFLR-----RE---KIDLVFVDV-FEGEESLNLIRRIRE   71 (142)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHGGGTC--EEE-EESSHHHHHHHHT-----TS---CCSEEEEEC-TTTHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHh-----cc---CCCEEEEeC-CCCCcHHHHHHHHHH
Confidence            35789999999999999999988776  344 5677777776553     35   799999997 5432  234454444


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      ....-.++++
T Consensus        72 ~~~~~pii~l   81 (142)
T 2qxy_A           72 EFPDTKVAVL   81 (142)
T ss_dssp             HCTTCEEEEE
T ss_pred             HCCCCCEEEE
Confidence            3322334444

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=91.40  E-value=1.8  Score=27.49  Aligned_cols=76  Identities=11%  Similarity=-0.080  Sum_probs=51.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......++.++..+.   ......+..+.+..+.     ..   ++|+|++|....  ....+++.+..
T Consensus         7 ~~~ilivdd~~~~~~~l~~~L~~~~~---~v~~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~~   75 (137)
T 3hdg_A            7 ALKILIVEDDTDAREWLSTIISNHFP---EVWSAGDGEEGERLFG-----LH---APDVIITDIRMPKLGGLEMLDRIKA   75 (137)
T ss_dssp             CCCEEEECSCHHHHHHHHHHHHTTCS---CEEEESSHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHhcCc---EEEEECCHHHHHHHHh-----cc---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            45899999999999999999987554   2345667777776654     35   799999997433  33455565554


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      . .++..+++
T Consensus        76 ~-~~~~~ii~   84 (137)
T 3hdg_A           76 G-GAKPYVIV   84 (137)
T ss_dssp             T-TCCCEEEE
T ss_pred             c-CCCCcEEE
Confidence            3 34444443

>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}

Probab=91.35  E-value=0.18  Score=33.37  Aligned_cols=57  Identities=16%  Similarity=0.095  Sum_probs=44.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +..+|..||=++......++.++..|+.  +.....++.+.+..+.     ..   +||+|++|-..
T Consensus         7 r~~rILiVdD~~~~~~~l~~~L~~~G~~--v~~~a~~g~eAl~~~~-----~~---~~DlvllDi~m   63 (123)
T 2lpm_A            7 RRLRVLVVEDESMIAMLIEDTLCELGHE--VAATASRMQEALDIAR-----KG---QFDIAIIDVNL   63 (123)
T ss_dssp             CCCCEEEESSSTTTSHHHHHHHHHHCCC--CCBCSCCHHHHHHHHH-----HC---CSSEEEECSSS
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHH-----hC---CCCEEEEecCC
Confidence            3457999999999999999999999873  3224567877776553     35   89999999643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=91.34  E-value=0.37  Score=36.55  Aligned_cols=75  Identities=16%  Similarity=0.064  Sum_probs=48.0

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+++|++++.+++.++.+++    .|....+.... .+..+.+.+..     ..   .+|+|+-....    ..+..+.+
T Consensus       169 ~G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----~~---~~d~vi~~~g~----~~~~~~~~  232 (333)
T 1v3u_A          169 KGCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS-----PD---GYDCYFDNVGG----EFLNTVLS  232 (333)
T ss_dssp             TTCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC-----TT---CEEEEEESSCH----HHHHHHHT
T ss_pred             CCCEEEEEeCCHHHHHHHHh----cCCcEEEecCCHHHHHHHHHHHh-----CC---CCeEEEECCCh----HHHHHHHH
Confidence            46789999999988877743    35421122112 34444444331     24   79999877653    24677889


Q ss_pred             cccCCeEEEEeC
Q 044253           89 LFKVGGIVIYDN  100 (139)
Q Consensus        89 lL~~gG~ii~~~  100 (139)
                      .|+++|.++.-.
T Consensus       233 ~l~~~G~~v~~g  244 (333)
T 1v3u_A          233 QMKDFGKIAICG  244 (333)
T ss_dssp             TEEEEEEEEECC
T ss_pred             HHhcCCEEEEEe
Confidence            999999998643

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=91.28  E-value=1.3  Score=27.75  Aligned_cols=75  Identities=11%  Similarity=0.039  Sum_probs=51.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--HHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--RNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--~~~~~~~~~l   89 (139)
                      .+|..||-++......+..++..|+  .+. ...+..+.+..+.     ..   ++|+|++|...+..  .++++.+...
T Consensus         3 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlii~D~~~p~~~g~~~~~~lr~~   71 (120)
T 3f6p_A            3 KKILVVDDEKPIADILEFNLRKEGY--EVH-CAHDGNEAVEMVE-----EL---QPDLILLDIMLPNKDGVEVCREVRKK   71 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TT---CCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred             CeEEEEECCHHHHHHHHHHHHhCCE--EEE-EeCCHHHHHHHHh-----hC---CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence            4789999999999999999998886  243 4677887776553     35   89999999754432  3345555432


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                       .+-.++++
T Consensus        72 -~~~~ii~~   79 (120)
T 3f6p_A           72 -YDMPIIML   79 (120)
T ss_dssp             -CCSCEEEE
T ss_pred             -CCCCEEEE
Confidence             23344444

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=91.20  E-value=2.1  Score=27.90  Aligned_cols=76  Identities=12%  Similarity=0.001  Sum_probs=51.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..+...|+  .+. ...+..+.+..+.     ..   .+|+|++|....  ....+++.+...
T Consensus         4 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dliild~~l~~~~g~~~~~~l~~~   72 (155)
T 1qkk_A            4 PSVFLIDDDRDLRKAMQQTLELAGF--TVS-SFASATEALAGLS-----AD---FAGIVISDIRMPGMDGLALFRKILAL   72 (155)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHTCC-----TT---CCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCc--EEE-EECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence            4688999999999999999998886  244 5677777776553     34   799999997433  234455555544


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      ...-.++++
T Consensus        73 ~~~~pii~l   81 (155)
T 1qkk_A           73 DPDLPMILV   81 (155)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEEEE
Confidence            333344544

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=91.18  E-value=1.7  Score=26.70  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=50.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|.....  -..+++.+.+.
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~~   70 (116)
T 3a10_A            2 KRILVVDDEPNIRELLKEELQEEGY--EID-TAENGEEALKKFF-----SG---NYDLVILDIEMPGISGLEVAGEIRKK   70 (116)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred             cEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHh-----cC---CCCEEEEECCCCCCCHHHHHHHHHcc
Confidence            3688999999999999999998776  244 5667777766553     35   7999999975432  23445555443


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      -..-.++++
T Consensus        71 ~~~~~ii~~   79 (116)
T 3a10_A           71 KKDAKIILL   79 (116)
T ss_dssp             CTTCCEEEE
T ss_pred             CCCCeEEEE
Confidence            222234444

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=91.18  E-value=0.82  Score=34.86  Aligned_cols=77  Identities=12%  Similarity=0.041  Sum_probs=49.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEE-eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLM-ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~-~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+++|++++.+++..+.+++    .|...-+.+. ..+..+.+.+..     ..   .+|+||-....   ...++.+.+
T Consensus       193 ~Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----~~---~~D~vi~~~g~---~~~~~~~~~  257 (347)
T 2hcy_A          193 MGYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT-----DG---GAHGVINVSVS---EAAIEASTR  257 (347)
T ss_dssp             TTCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH-----TS---CEEEEEECSSC---HHHHHHHTT
T ss_pred             CCCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh-----CC---CCCEEEECCCc---HHHHHHHHH
Confidence            46789999999998877764    4542111111 134444444432     24   69999876542   346778889


Q ss_pred             cccCCeEEEEeCC
Q 044253           89 LFKVGGIVIYDNT  101 (139)
Q Consensus        89 lL~~gG~ii~~~~  101 (139)
                      .|+++|.++.-..
T Consensus       258 ~l~~~G~iv~~g~  270 (347)
T 2hcy_A          258 YVRANGTTVLVGM  270 (347)
T ss_dssp             SEEEEEEEEECCC
T ss_pred             HHhcCCEEEEEeC
Confidence            9999999986443

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=91.16  E-value=1.9  Score=27.32  Aligned_cols=80  Identities=13%  Similarity=0.041  Sum_probs=52.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..+|-++......++.++..|+.  +.. ..+..+.+..+..    ..   .+|+|++|....  ....+++.+.
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--v~~-~~~~~~a~~~~~~----~~---~~dlvi~D~~l~~~~g~~~~~~l~   75 (136)
T 3hdv_A            6 ARPLVLVVDDNAVNREALILYLKSRGID--AVG-ADGAEEARLYLHY----QK---RIGLMITDLRMQPESGLDLIRTIR   75 (136)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCC--EEE-ESSHHHHHHHHHH----CT---TEEEEEECSCCSSSCHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHHcCce--EEE-eCCHHHHHHHHHh----CC---CCcEEEEeccCCCCCHHHHHHHHH
Confidence            3568999999999999999999988863  433 5667776655431    23   499999997533  3345566665


Q ss_pred             hcccCC-eEEEEe
Q 044253           88 TLFKVG-GIVIYD   99 (139)
Q Consensus        88 ~lL~~g-G~ii~~   99 (139)
                      ..-.+. -++++.
T Consensus        76 ~~~~~~~~ii~~s   88 (136)
T 3hdv_A           76 ASERAALSIIVVS   88 (136)
T ss_dssp             TSTTTTCEEEEEE
T ss_pred             hcCCCCCCEEEEe
Confidence            431234 344443

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.02  E-value=0.36  Score=36.65  Aligned_cols=76  Identities=11%  Similarity=0.086  Sum_probs=47.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-....    ..++.+.+.
T Consensus       169 ~G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~~----~~---~~d~vi~~~g~----~~~~~~~~~  233 (333)
T 1wly_A          169 LGATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREITG----GK---GVDVVYDSIGK----DTLQKSLDC  233 (333)
T ss_dssp             TTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHHT----TC---CEEEEEECSCT----TTHHHHHHT
T ss_pred             CCCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHhC----CC---CCeEEEECCcH----HHHHHHHHh
Confidence            46789999999988888765    34321111112333333333221    24   69999876543    346678899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       234 l~~~G~iv~~g  244 (333)
T 1wly_A          234 LRPRGMCAAYG  244 (333)
T ss_dssp             EEEEEEEEECC
T ss_pred             hccCCEEEEEe
Confidence            99999998643

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=90.97  E-value=2.2  Score=28.36  Aligned_cols=79  Identities=14%  Similarity=0.079  Sum_probs=51.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||-++......+..++..+.. .+.....+..+.+..+.     ..   .+|+|++|....  .-..+++.+..
T Consensus        25 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~---~~dlvilD~~l~~~~g~~l~~~lr~   95 (164)
T 3t8y_A           25 VIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFAKDGLEAVEKAI-----EL---KPDVITMDIEMPNLNGIEALKLIMK   95 (164)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred             ccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHhc-----cC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            457999999999999999999876531 22234677877776654     35   799999997433  23445555543


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      . .+--++++.
T Consensus        96 ~-~~~~ii~~s  105 (164)
T 3t8y_A           96 K-APTRVIMVS  105 (164)
T ss_dssp             H-SCCEEEEEE
T ss_pred             c-CCceEEEEe
Confidence            2 233455543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=90.93  E-value=0.36  Score=36.83  Aligned_cols=77  Identities=12%  Similarity=0.107  Sum_probs=48.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-......    .....+.
T Consensus       168 ~Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~~----~~---g~Dvvid~~g~~~----~~~~~~~  232 (340)
T 3gms_A          168 LNFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELTN----GI---GADAAIDSIGGPD----GNELAFS  232 (340)
T ss_dssp             HTCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TS---CEEEEEESSCHHH----HHHHHHT
T ss_pred             cCCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHhC----CC---CCcEEEECCCChh----HHHHHHH
Confidence            56799999999999998876    35431122222344444443321    24   7999986554321    2334489


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+++|.++.-..
T Consensus       233 l~~~G~iv~~G~  244 (340)
T 3gms_A          233 LRPNGHFLTIGL  244 (340)
T ss_dssp             EEEEEEEEECCC
T ss_pred             hcCCCEEEEEee
Confidence            999999987544

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=90.93  E-value=0.61  Score=35.65  Aligned_cols=73  Identities=15%  Similarity=0.135  Sum_probs=47.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|.. .+--...+..+.+.+..     ..   .+|+||-...   ....++.+.+.
T Consensus       174 ~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~-----~~---g~Dvv~d~~g---~~~~~~~~~~~  237 (346)
T 3fbg_A          174 YGLRVITTASRNETIEWTKK----MGAD-IVLNHKESLLNQFKTQG-----IE---LVDYVFCTFN---TDMYYDDMIQL  237 (346)
T ss_dssp             TTCEEEEECCSHHHHHHHHH----HTCS-EEECTTSCHHHHHHHHT-----CC---CEEEEEESSC---HHHHHHHHHHH
T ss_pred             cCCEEEEEeCCHHHHHHHHh----cCCc-EEEECCccHHHHHHHhC-----CC---CccEEEECCC---chHHHHHHHHH
Confidence            46799999999999888876    3542 22111234444443331     35   7998876443   23456788899


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      |+++|.++.
T Consensus       238 l~~~G~iv~  246 (346)
T 3fbg_A          238 VKPRGHIAT  246 (346)
T ss_dssp             EEEEEEEEE
T ss_pred             hccCCEEEE
Confidence            999999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=90.87  E-value=0.52  Score=35.99  Aligned_cols=75  Identities=11%  Similarity=-0.010  Sum_probs=47.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++..+.+++    .|.. .+.-...+..+.+.+...    ..   .+|+||-.....    .++.+.+.
T Consensus       183 ~Ga~Vi~~~~~~~~~~~~~~----~ga~-~v~~~~~~~~~~v~~~~~----~~---g~Dvvid~~g~~----~~~~~~~~  246 (342)
T 4eye_A          183 MGAKVIAVVNRTAATEFVKS----VGAD-IVLPLEEGWAKAVREATG----GA---GVDMVVDPIGGP----AFDDAVRT  246 (342)
T ss_dssp             TTCEEEEEESSGGGHHHHHH----HTCS-EEEESSTTHHHHHHHHTT----TS---CEEEEEESCC------CHHHHHHT
T ss_pred             cCCEEEEEeCCHHHHHHHHh----cCCc-EEecCchhHHHHHHHHhC----CC---CceEEEECCchh----HHHHHHHh
Confidence            46799999999999988876    3542 221111344444433321    24   699998765432    46677889


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       247 l~~~G~iv~~G  257 (342)
T 4eye_A          247 LASEGRLLVVG  257 (342)
T ss_dssp             EEEEEEEEEC-
T ss_pred             hcCCCEEEEEE
Confidence            99999998643

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.80  E-value=1.1  Score=34.03  Aligned_cols=78  Identities=17%  Similarity=-0.010  Sum_probs=51.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      ..++++|.+++.++.|++    .|...-+.....+..+....+..    ..   .+|+|+-....   ...++.+.++|+
T Consensus       186 ~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----~~---g~d~v~d~~G~---~~~~~~~~~~l~  251 (346)
T 4a2c_A          186 KSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----LR---FNQLILETAGV---PQTVELAVEIAG  251 (346)
T ss_dssp             SEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----GC---SSEEEEECSCS---HHHHHHHHHHCC
T ss_pred             cEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----cC---Ccccccccccc---cchhhhhhheec
Confidence            356899999998888864    57643344344555555544431    24   68887765532   445778889999


Q ss_pred             CCeEEEEeCCCC
Q 044253           92 VGGIVIYDNTLW  103 (139)
Q Consensus        92 ~gG~ii~~~~~~  103 (139)
                      ++|.+++-....
T Consensus       252 ~~G~~v~~g~~~  263 (346)
T 4a2c_A          252 PHAQLALVGTLH  263 (346)
T ss_dssp             TTCEEEECCCCS
T ss_pred             CCeEEEEEeccC
Confidence            999998755443

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=90.78  E-value=0.45  Score=36.40  Aligned_cols=77  Identities=6%  Similarity=-0.103  Sum_probs=49.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-....    ..+..+.+.
T Consensus       188 ~Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~---g~D~vid~~g~----~~~~~~~~~  252 (349)
T 3pi7_A          188 EGFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AE---QPRIFLDAVTG----PLASAIFNA  252 (349)
T ss_dssp             HTCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HH---CCCEEEESSCH----HHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CC---CCcEEEECCCC----hhHHHHHhh
Confidence            46799999999999988874    45432122222344444444321    24   69998765442    234677899


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+++|.++.-..
T Consensus       253 l~~~G~iv~~G~  264 (349)
T 3pi7_A          253 MPKRARWIIYGR  264 (349)
T ss_dssp             SCTTCEEEECCC
T ss_pred             hcCCCEEEEEec
Confidence            999999987543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.77  E-value=0.34  Score=36.60  Aligned_cols=76  Identities=11%  Similarity=0.090  Sum_probs=47.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-...    ...++.+.+.
T Consensus       164 ~G~~V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~---~~D~vi~~~g----~~~~~~~~~~  228 (327)
T 1qor_A          164 LGAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEITG----GK---KVRVVYDSVG----RDTWERSLDC  228 (327)
T ss_dssp             HTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TC---CEEEEEECSC----GGGHHHHHHT
T ss_pred             cCCEEEEEeCCHHHHHHHHH----cCCCEEEECCCccHHHHHHHHhC----CC---CceEEEECCc----hHHHHHHHHH
Confidence            46789999999988888865    34321111112233333333211    24   6999987765    2346678899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       229 l~~~G~iv~~g  239 (327)
T 1qor_A          229 LQRRGLMVSFG  239 (327)
T ss_dssp             EEEEEEEEECC
T ss_pred             hcCCCEEEEEe
Confidence            99999998643

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}

Probab=90.73  E-value=1.8  Score=27.96  Aligned_cols=75  Identities=12%  Similarity=0.081  Sum_probs=48.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHH--cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKK--VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~--~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      .+|..+|-++......+..+..  .|+  .+.....+..+.+..+.     ..   .+|+|++|...+  .-.++++.+.
T Consensus         3 ~~ILivdd~~~~~~~l~~~L~~~~~~~--~~~~~~~~~~~al~~~~-----~~---~~dlvllD~~lp~~~g~~l~~~l~   72 (141)
T 3cu5_A            3 LRILIVDDEKLTRDGLIANINWKALSF--DQIDQADDGINAIQIAL-----KH---PPNVLLTDVRMPRMDGIELVDNIL   72 (141)
T ss_dssp             CEEEEECSCHHHHHHHHHHCCGGGSCC--SEEEEESSHHHHHHHHT-----TS---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHccCCc--EEeeecccHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence            4788999999998888887763  343  24436778887776553     35   799999997543  2334555554


Q ss_pred             hcccCCeEEE
Q 044253           88 TLFKVGGIVI   97 (139)
Q Consensus        88 ~lL~~gG~ii   97 (139)
                      .. .++..++
T Consensus        73 ~~-~~~~~ii   81 (141)
T 3cu5_A           73 KL-YPDCSVI   81 (141)
T ss_dssp             HH-CTTCEEE
T ss_pred             hh-CCCCcEE
Confidence            43 3444443

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=90.58  E-value=0.34  Score=37.60  Aligned_cols=77  Identities=13%  Similarity=0.038  Sum_probs=50.2

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh---hHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ---LLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~---~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      .++ +|++++.+++..+.+++    .|...-+.....|..+.+.+   +.     .+   .+|+||--..   ....++.
T Consensus       205 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~-----~g---g~Dvvid~~G---~~~~~~~  269 (370)
T 4ej6_A          205 AGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLV-----PG---GVDVVIECAG---VAETVKQ  269 (370)
T ss_dssp             TTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSS-----TT---CEEEEEECSC---CHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhcc-----CC---CCCEEEECCC---CHHHHHH
Confidence            355 89999999999888875    46532222223455454443   21     23   7999886543   2345778


Q ss_pred             HhhcccCCeEEEEeCC
Q 044253           86 LMTLFKVGGIVIYDNT  101 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~  101 (139)
                      +.+.|+++|.++.-..
T Consensus       270 ~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          270 STRLAKAGGTVVILGV  285 (370)
T ss_dssp             HHHHEEEEEEEEECSC
T ss_pred             HHHHhccCCEEEEEec
Confidence            8899999999987543

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=90.53  E-value=1.8  Score=27.88  Aligned_cols=80  Identities=11%  Similarity=0.016  Sum_probs=51.5

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcC-CCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCcch--HHHHH
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVE-VDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKDNY--RNYRE   84 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g-~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~~~--~~~~~   84 (139)
                      ....+|..||-++......+..++..| +  .+.. ..+..+.+..+..    . .   .+|+|++|......  ..+++
T Consensus        18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~--~v~~-~~~~~~~~~~~~~----~~~---~~dlvi~D~~l~~~~g~~~~~   87 (146)
T 4dad_A           18 QGMINILVASEDASRLAHLARLVGDAGRY--RVTR-TVGRAAQIVQRTD----GLD---AFDILMIDGAALDTAELAAIE   87 (146)
T ss_dssp             GGGCEEEEECSCHHHHHHHHHHHHHHCSC--EEEE-ECCCHHHHTTCHH----HHT---TCSEEEEECTTCCHHHHHHHH
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHhhCCCe--EEEE-eCCHHHHHHHHHh----cCC---CCCEEEEeCCCCCccHHHHHH
Confidence            345689999999999999999999887 4  2333 5566655544431    2 5   89999999754432  33455


Q ss_pred             HHhhcccCCe-EEEEe
Q 044253           85 TLMTLFKVGG-IVIYD   99 (139)
Q Consensus        85 ~~~~lL~~gG-~ii~~   99 (139)
                      .+...- ++. ++++.
T Consensus        88 ~l~~~~-~~~~ii~lt  102 (146)
T 4dad_A           88 KLSRLH-PGLTCLLVT  102 (146)
T ss_dssp             HHHHHC-TTCEEEEEE
T ss_pred             HHHHhC-CCCcEEEEe
Confidence            554432 343 44443

>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}

Probab=90.52  E-value=2.2  Score=27.72  Aligned_cols=76  Identities=11%  Similarity=-0.019  Sum_probs=49.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      .+|..+|-++......+..++.. |+  .......+..+.+..+.     . .   .+|+|++|....  ....+++.+.
T Consensus         4 ~~iLivdd~~~~~~~l~~~L~~~~g~--~~v~~~~~~~~a~~~l~-----~~~---~~dlvi~d~~l~~~~g~~~~~~l~   73 (154)
T 2qsj_A            4 TVVLIVDDHHLIRAGAKNLLEGAFSG--MRVEGAETVSDALAFLE-----ADN---TVDLILLDVNLPDAEAIDGLVRLK   73 (154)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHCTT--EEEEEESSHHHHHHHHH-----TTC---CCSEEEECC------CHHHHHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEecCHHHHHHHHh-----ccC---CCCEEEEeCCCCCCchHHHHHHHH
Confidence            47899999999999999999887 64  23445667777766553     3 5   899999997432  2234555554


Q ss_pred             hcccCCeEEEE
Q 044253           88 TLFKVGGIVIY   98 (139)
Q Consensus        88 ~lL~~gG~ii~   98 (139)
                      .. .++..+++
T Consensus        74 ~~-~~~~~ii~   83 (154)
T 2qsj_A           74 RF-DPSNAVAL   83 (154)
T ss_dssp             HH-CTTSEEEE
T ss_pred             Hh-CCCCeEEE
Confidence            44 34444443

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=90.50  E-value=0.38  Score=36.53  Aligned_cols=77  Identities=13%  Similarity=0.071  Sum_probs=49.4

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+++|++++.+++..+.+.+   ..|...-+.....+..+.+.+..     ..   .+|+||-....    ..++.+.+
T Consensus       172 ~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~-----~~---~~d~vi~~~g~----~~~~~~~~  236 (336)
T 4b7c_A          172 LKGCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKREC-----PK---GIDVFFDNVGG----EILDTVLT  236 (336)
T ss_dssp             HTTCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHC-----TT---CEEEEEESSCH----HHHHHHHT
T ss_pred             HCCCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhc-----CC---CceEEEECCCc----chHHHHHH
Confidence            356799999999988877732   34553112222234444444332     24   79998876542    36778889


Q ss_pred             cccCCeEEEEeC
Q 044253           89 LFKVGGIVIYDN  100 (139)
Q Consensus        89 lL~~gG~ii~~~  100 (139)
                      .|+++|.++.-.
T Consensus       237 ~l~~~G~iv~~G  248 (336)
T 4b7c_A          237 RIAFKARIVLCG  248 (336)
T ss_dssp             TEEEEEEEEECC
T ss_pred             HHhhCCEEEEEe
Confidence            999999998643

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=90.43  E-value=2.2  Score=26.76  Aligned_cols=65  Identities=15%  Similarity=0.011  Sum_probs=47.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~   87 (139)
                      .+|..||-++......+..++..|+  .+. ...+..+.+..+.     ..   ++|+|++|...+.  -..+++.+.
T Consensus         3 ~~ILivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~al~~l~-----~~---~~dlvllD~~~p~~~g~~~~~~l~   69 (122)
T 3gl9_A            3 KKVLLVDDSAVLRKIVSFNLKKEGY--EVI-EAENGQIALEKLS-----EF---TPDLIVLXIMMPVMDGFTVLKKLQ   69 (122)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHT-----TB---CCSEEEECSCCSSSCHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHH-----hc---CCCEEEEeccCCCCcHHHHHHHHH
Confidence            4789999999999999999998886  243 5678888776653     35   7999999974332  334555554

>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1

Probab=90.42  E-value=2.3  Score=27.04  Aligned_cols=79  Identities=5%  Similarity=0.014  Sum_probs=53.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCc--chHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKD--NYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~--~~~~~~~~~   86 (139)
                      ...+|..+|-++......+..++..|+  .+ ....+..+.+..+.     . .   .+|+|++|....  ....+++.+
T Consensus        14 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~l~-----~~~---~~dlvilD~~l~~~~g~~~~~~l   82 (138)
T 2b4a_A           14 QPFRVTLVEDEPSHATLIQYHLNQLGA--EV-TVHPSGSAFFQHRS-----QLS---TCDLLIVSDQLVDLSIFSLLDIV   82 (138)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEESSHHHHHHTGG-----GGG---SCSEEEEETTCTTSCHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHHcCC--EE-EEeCCHHHHHHHHH-----hCC---CCCEEEEeCCCCCCCHHHHHHHH
Confidence            456799999999999999999998876  34 35667777776553     4 5   799999997543  234455655


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      ......-.++++.
T Consensus        83 ~~~~~~~~ii~ls   95 (138)
T 2b4a_A           83 KEQTKQPSVLILT   95 (138)
T ss_dssp             TTSSSCCEEEEEE
T ss_pred             HhhCCCCCEEEEE
Confidence            5532233344444

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=90.31  E-value=2.2  Score=27.10  Aligned_cols=67  Identities=7%  Similarity=-0.073  Sum_probs=47.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      ...+|..||-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|+ -+.. ....+++.+...
T Consensus        17 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~---~~dlvi-~~~~-~g~~~~~~l~~~   83 (137)
T 2pln_A           17 GSMRVLLIEKNSVLGGEIEKGLNVKGF--MAD-VTESLEDGEYLMD-----IR---NYDLVM-VSDK-NALSFVSRIKEK   83 (137)
T ss_dssp             TCSEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HS---CCSEEE-ECST-THHHHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHcCc--EEE-EeCCHHHHHHHHH-----cC---CCCEEE-EcCc-cHHHHHHHHHhc
Confidence            456899999999999999999998776  344 6677777776553     35   799999 3332 334556666555

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.16  E-value=0.37  Score=37.65  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------   78 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------   78 (139)
                      .++ +|+++|.+++.++.+++    .|. +-+.....|. .+.+.++..    ..   .+|+||--.....         
T Consensus       208 ~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~~----g~---g~Dvvid~~g~~~~~~~~~~~~  275 (398)
T 2dph_A          208 LGAACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQILG----KP---EVDCGVDAVGFEAHGLGDEANT  275 (398)
T ss_dssp             HTCSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHHS----SS---CEEEEEECSCTTCBCSGGGTTS
T ss_pred             cCCCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHhC----CC---CCCEEEECCCCccccccccccc
Confidence            356 89999999998888764    464 2222222343 344443321    24   6999986544321         


Q ss_pred             --hHHHHHHHhhcccCCeEEEEeCC
Q 044253           79 --YRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        79 --~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                        ....++.+++.|+++|.+++-..
T Consensus       276 ~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          276 ETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             BCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             cccHHHHHHHHHHHhcCCEEEEecc
Confidence              12357788899999999986443

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=90.15  E-value=2.7  Score=27.47  Aligned_cols=68  Identities=13%  Similarity=-0.061  Sum_probs=48.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..||-++......++.++..|+  .+ ....+..+.+..+.     ..   ++|+|++|....  +...+++.+.
T Consensus         6 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~lr   74 (154)
T 3gt7_A            6 RAGEILIVEDSPTQAEHLKHILEETGY--QT-EHVRNGREAVRFLS-----LT---RPDLIISDVLMPEMDGYALCRWLK   74 (154)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHT-----TC---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCcEEEEeCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence            346899999999999999999998886  24 45567777776653     35   899999997433  3344555554


Q ss_pred             h
Q 044253           88 T   88 (139)
Q Consensus        88 ~   88 (139)
                      .
T Consensus        75 ~   75 (154)
T 3gt7_A           75 G   75 (154)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=90.05  E-value=0.87  Score=35.20  Aligned_cols=77  Identities=17%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEE--eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLM--ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~--~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .++ +|+++|.+++.++.|++    .|...-+...  ..+..+.+.++.     ..   .+|+||--...   ...++.+
T Consensus       216 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~-----~g---g~D~vid~~g~---~~~~~~~  280 (378)
T 3uko_A          216 AGASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT-----DG---GVDYSFECIGN---VSVMRAA  280 (378)
T ss_dssp             HTCSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred             cCCCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc-----CC---CCCEEEECCCC---HHHHHHH
Confidence            355 89999999999988863    5653211111  234445444442     34   79999865432   3457788


Q ss_pred             hhcccCC-eEEEEeCC
Q 044253           87 MTLFKVG-GIVIYDNT  101 (139)
Q Consensus        87 ~~lL~~g-G~ii~~~~  101 (139)
                      .+.|++| |.++.-..
T Consensus       281 ~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          281 LECCHKGWGTSVIVGV  296 (378)
T ss_dssp             HHTBCTTTCEEEECSC
T ss_pred             HHHhhccCCEEEEEcc
Confidence            8999996 99987544

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=89.99  E-value=3  Score=28.93  Aligned_cols=76  Identities=9%  Similarity=0.058  Sum_probs=50.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|...+  +-.++++.+...
T Consensus         3 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvllD~~l~~~~g~~~~~~lr~~   71 (225)
T 1kgs_A            3 VRVLVVEDERDLADLITEALKKEMF--TVD-VCYDGEEGMYMAL-----NE---PFDVVILDIMLPVHDGWEILKSMRES   71 (225)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence            4789999999999999999988775  243 5677777766553     35   799999997533  233455555443


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      -..-.++++
T Consensus        72 ~~~~~ii~l   80 (225)
T 1kgs_A           72 GVNTPVLML   80 (225)
T ss_dssp             TCCCCEEEE
T ss_pred             CCCCCEEEE
Confidence            222334444

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=89.97  E-value=0.57  Score=35.67  Aligned_cols=76  Identities=18%  Similarity=0.184  Sum_probs=48.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+.      ..   .+|+||-....   ...++.+.+.
T Consensus       187 ~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~------~~---~~d~vid~~g~---~~~~~~~~~~  250 (339)
T 1rjw_A          187 MGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------VG---GVHAAVVTAVS---KPAFQSAYNS  250 (339)
T ss_dssp             TTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------HS---SEEEEEESSCC---HHHHHHHHHH
T ss_pred             cCCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH------hC---CCCEEEECCCC---HHHHHHHHHH
Confidence            46799999999999888764    454211111112333333332      14   79999876542   3456778899


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+++|.++.-..
T Consensus       251 l~~~G~~v~~g~  262 (339)
T 1rjw_A          251 IRRGGACVLVGL  262 (339)
T ss_dssp             EEEEEEEEECCC
T ss_pred             hhcCCEEEEecc
Confidence            999999986443

>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A

Probab=89.94  E-value=2.5  Score=29.04  Aligned_cols=76  Identities=8%  Similarity=0.021  Sum_probs=52.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..||-++......+..+...|+  .+.....+..+.+..+.     ..   .+|+|++|...+  +...+++.+...
T Consensus        14 ~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~-----~~---~~dlvi~D~~~p~~~g~~~~~~l~~~   83 (205)
T 1s8n_A           14 RRVLIAEDEALIRMDLAEMLREEGY--EIVGEAGDGQEAVELAE-----LH---KPDLVIMDVKMPRRDGIDAASEIASK   83 (205)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred             ccEEEEECCHHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh-----hc---CCCEEEEeCCCCCCChHHHHHHHHhc
Confidence            5799999999999999999988776  24446778888776553     34   799999997433  234455555443


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                       .+..++++
T Consensus        84 -~~~pii~l   91 (205)
T 1s8n_A           84 -RIAPIVVL   91 (205)
T ss_dssp             -TCSCEEEE
T ss_pred             -CCCCEEEE
Confidence             23455555

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=89.94  E-value=2.7  Score=27.22  Aligned_cols=75  Identities=12%  Similarity=0.005  Sum_probs=48.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||-++......++.++. |+  .+. ...+..+.+..+..    ..   +||+|++|....  ...++++.+..
T Consensus         4 ~~~ILivdd~~~~~~~l~~~L~~-~~--~v~-~~~~~~~a~~~l~~----~~---~~dlvi~D~~l~~~~g~~~~~~l~~   72 (151)
T 3kcn_A            4 NERILLVDDDYSLLNTLKRNLSF-DF--EVT-TCESGPEALACIKK----SD---PFSVIMVDMRMPGMEGTEVIQKARL   72 (151)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTT-TS--EEE-EESSHHHHHHHHHH----SC---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHhcc-Cc--eEE-EeCCHHHHHHHHHc----CC---CCCEEEEeCCCCCCcHHHHHHHHHh
Confidence            45799999999999999988864 43  233 55677777665532    24   589999997433  33445555554


Q ss_pred             cccCCeEEE
Q 044253           89 LFKVGGIVI   97 (139)
Q Consensus        89 lL~~gG~ii   97 (139)
                      .- ++..++
T Consensus        73 ~~-~~~~ii   80 (151)
T 3kcn_A           73 IS-PNSVYL   80 (151)
T ss_dssp             HC-SSCEEE
T ss_pred             cC-CCcEEE
Confidence            33 444433

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=89.92  E-value=0.31  Score=37.32  Aligned_cols=78  Identities=12%  Similarity=0.038  Sum_probs=49.7

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .++ +|+++|.+++..+.+++    .|...-+.....+..+.+.+...    ..   .+|+||--...   ...++.+.+
T Consensus       189 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t~----g~---g~D~v~d~~g~---~~~~~~~~~  254 (352)
T 3fpc_A          189 LGAGRIFAVGSRKHCCDIALE----YGATDIINYKNGDIVEQILKATD----GK---GVDKVVIAGGD---VHTFAQAVK  254 (352)
T ss_dssp             TTCSSEEEECCCHHHHHHHHH----HTCCEEECGGGSCHHHHHHHHTT----TC---CEEEEEECSSC---TTHHHHHHH
T ss_pred             cCCcEEEEECCCHHHHHHHHH----hCCceEEcCCCcCHHHHHHHHcC----CC---CCCEEEECCCC---hHHHHHHHH
Confidence            355 79999999998888875    45532122223455554444321    24   69999854432   235677889


Q ss_pred             cccCCeEEEEeCC
Q 044253           89 LFKVGGIVIYDNT  101 (139)
Q Consensus        89 lL~~gG~ii~~~~  101 (139)
                      .|+++|.++.-..
T Consensus       255 ~l~~~G~~v~~G~  267 (352)
T 3fpc_A          255 MIKPGSDIGNVNY  267 (352)
T ss_dssp             HEEEEEEEEECCC
T ss_pred             HHhcCCEEEEecc
Confidence            9999999986543

>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A

Probab=89.40  E-value=3.6  Score=28.64  Aligned_cols=73  Identities=16%  Similarity=0.122  Sum_probs=48.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh--h------cccCCCceeEEEEcCCCc--chH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE--K------IHFFFENFDYAFVDAHKD--NYR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~--~------~~~~~~~fD~If~D~~~~--~~~   80 (139)
                      ..+|..||-++......++.++..|+.  ......+..+.+..+....  +      ...   .||+|++|....  +-.
T Consensus        61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~--~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~---~~dlillD~~lp~~~G~  135 (206)
T 3mm4_A           61 GKRVLVVDDNFISRKVATGKLKKMGVS--EVEQCDSGKEALRLVTEGLTQREEQGSVDKL---PFDYIFMDCQMPEMDGY  135 (206)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHHHHHHHTCSSCC---SCSEEEEESCCSSSCHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCC--eeeeeCCHHHHHHHHHhhcccccccccccCC---CCCEEEEcCCCCCCCHH
Confidence            457999999999999999999998863  3445567777766543210  0      013   699999997543  234


Q ss_pred             HHHHHHhh
Q 044253           81 NYRETLMT   88 (139)
Q Consensus        81 ~~~~~~~~   88 (139)
                      ++++.+..
T Consensus       136 el~~~lr~  143 (206)
T 3mm4_A          136 EATREIRK  143 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            45555543

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=89.33  E-value=2.4  Score=30.32  Aligned_cols=67  Identities=13%  Similarity=0.011  Sum_probs=48.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|....  +-.++++.+..
T Consensus        23 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvllD~~lp~~~g~~~~~~lr~   91 (250)
T 3r0j_A           23 EARVLVVDDEANIVELLSVSLKFQGF--EVY-TATNGAQALDRAR-----ET---RPDAVILDVXMPGMDGFGVLRRLRA   91 (250)
T ss_dssp             SCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CceEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            35799999999999999999998876  244 5678888776653     35   799999997433  23445555544

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=89.19  E-value=0.88  Score=34.86  Aligned_cols=76  Identities=8%  Similarity=0.017  Sum_probs=47.6

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC---hHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESR---ALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d---a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      .++ +|+++|.+++..+.+++    .|..   .++..+   ..+....+....  ..   .+|+||--...   ...++.
T Consensus       194 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~--~~---g~D~vid~~g~---~~~~~~  258 (356)
T 1pl8_A          194 MGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL--GC---KPEVTIECTGA---EASIQA  258 (356)
T ss_dssp             TTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH--TS---CCSEEEECSCC---HHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHh--CC---CCCEEEECCCC---hHHHHH
Confidence            356 89999999998888764    5653   233222   233333322111  14   69999865542   335677


Q ss_pred             HhhcccCCeEEEEeC
Q 044253           86 LMTLFKVGGIVIYDN  100 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~  100 (139)
                      +.+.|+++|.++.-.
T Consensus       259 ~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          259 GIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHSCTTCEEEECS
T ss_pred             HHHHhcCCCEEEEEe
Confidence            889999999998644

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=89.14  E-value=0.36  Score=36.35  Aligned_cols=38  Identities=0%  Similarity=-0.009  Sum_probs=29.2

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEE
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKIN   41 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~   41 (139)
                      +++++..+.+++++|+++++++.|+++++...-...+.
T Consensus       250 ~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~  287 (297)
T 2zig_A          250 LIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLE  287 (297)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEE
T ss_pred             HHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhccccchh
Confidence            34566677899999999999999999998754333333

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=89.12  E-value=1.3  Score=34.13  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=48.9

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .++ +|++++.+++..+.+++    .|...-+....  .+..+.+.++.     ..   .+|+||--...   ...++.+
T Consensus       218 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~~---g~Dvvid~~G~---~~~~~~~  282 (376)
T 1e3i_A          218 AGASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----AG---GVDYSLDCAGT---AQTLKAA  282 (376)
T ss_dssp             TTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----TS---CBSEEEESSCC---HHHHHHH
T ss_pred             cCCCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh-----CC---CccEEEECCCC---HHHHHHH
Confidence            355 79999999999988864    46531111111  23444444432     24   79999865432   3457788


Q ss_pred             hhcccCC-eEEEEeCC
Q 044253           87 MTLFKVG-GIVIYDNT  101 (139)
Q Consensus        87 ~~lL~~g-G~ii~~~~  101 (139)
                      ++.|+++ |.++.-..
T Consensus       283 ~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          283 VDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHTBCTTTCEEEECCC
T ss_pred             HHHhhcCCCEEEEECC
Confidence            8999999 99986443

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=89.12  E-value=3.2  Score=26.86  Aligned_cols=85  Identities=15%  Similarity=0.065  Sum_probs=53.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh----hcccCCCceeEEEEcCCCc--chHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE----KIHFFFENFDYAFVDAHKD--NYRNYRE   84 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~----~~~~~~~~fD~If~D~~~~--~~~~~~~   84 (139)
                      ..+|..||-++......++.++..|....+. ...+..+.+..+....    ....   .+|+|++|....  ...++++
T Consensus         4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~-~~~~~~~al~~l~~~~~~~~~~~~---~~dliilD~~l~~~~g~~~~~   79 (152)
T 3heb_A            4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEII-AFTDGTSALNYLFGDDKSGRVSAG---RAQLVLLDLNLPDMTGIDILK   79 (152)
T ss_dssp             -CEEEEECCCHHHHHHHHHHHHHTTCCCCEE-EESSHHHHHHHHHCTTSSSGGGTT---CBEEEEECSBCSSSBHHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHHHHhCCCcceEE-EeCCHHHHHHHHhccccccccccC---CCCEEEEeCCCCCCcHHHHHH
Confidence            3578999999999999999999998742333 4567777766542000    0024   799999996432  3345566


Q ss_pred             HHhh--cccCCeEEEEe
Q 044253           85 TLMT--LFKVGGIVIYD   99 (139)
Q Consensus        85 ~~~~--lL~~gG~ii~~   99 (139)
                      .+..  ....--++++.
T Consensus        80 ~lr~~~~~~~~pii~~t   96 (152)
T 3heb_A           80 LVKENPHTRRSPVVILT   96 (152)
T ss_dssp             HHHHSTTTTTSCEEEEE
T ss_pred             HHHhcccccCCCEEEEe
Confidence            6554  22233355543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=89.06  E-value=1.3  Score=34.01  Aligned_cols=77  Identities=12%  Similarity=0.070  Sum_probs=48.8

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .++ +|++++.+++.++.+++    .|...-+....  .+..+.+.+..     ..   .+|+||--...   ...++.+
T Consensus       215 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~-----~~---g~D~vid~~g~---~~~~~~~  279 (374)
T 1cdo_A          215 AGAKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT-----NG---GVDFSLECVGN---VGVMRNA  279 (374)
T ss_dssp             TTCSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred             cCCCEEEEEcCCHHHHHHHHH----hCCceEEeccccchhHHHHHHHHh-----CC---CCCEEEECCCC---HHHHHHH
Confidence            355 79999999999998864    46531111111  23444444432     24   79999865432   3457788


Q ss_pred             hhcccCC-eEEEEeCC
Q 044253           87 MTLFKVG-GIVIYDNT  101 (139)
Q Consensus        87 ~~lL~~g-G~ii~~~~  101 (139)
                      ++.|+++ |.++.-..
T Consensus       280 ~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          280 LESCLKGWGVSVLVGW  295 (374)
T ss_dssp             HHTBCTTTCEEEECSC
T ss_pred             HHHhhcCCcEEEEEcC
Confidence            8999999 99986443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=88.99  E-value=1.3  Score=33.73  Aligned_cols=80  Identities=10%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+++|++++.+++..+.+++    .|...-+.... .+..+.+.+...+. ...   .+|+||-....   ...++.+.+
T Consensus       191 ~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~-~g~---g~D~vid~~g~---~~~~~~~~~  259 (352)
T 1e3j_A          191 YGAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSA-IGD---LPNVTIDCSGN---EKCITIGIN  259 (352)
T ss_dssp             TTCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHH-SSS---CCSEEEECSCC---HHHHHHHHH
T ss_pred             cCCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhccc-cCC---CCCEEEECCCC---HHHHHHHHH
Confidence            46679999999999888864    56531122111 33333333322100 014   69999865542   335677889


Q ss_pred             cccCCeEEEEeC
Q 044253           89 LFKVGGIVIYDN  100 (139)
Q Consensus        89 lL~~gG~ii~~~  100 (139)
                      .|+++|.++.-.
T Consensus       260 ~l~~~G~iv~~G  271 (352)
T 1e3j_A          260 ITRTGGTLMLVG  271 (352)
T ss_dssp             HSCTTCEEEECS
T ss_pred             HHhcCCEEEEEe
Confidence            999999998643

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=88.98  E-value=4  Score=28.46  Aligned_cols=77  Identities=8%  Similarity=-0.031  Sum_probs=51.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|...+  +..++++.+..
T Consensus         7 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvllD~~l~~~~g~~~~~~l~~   75 (233)
T 1ys7_A            7 SPRVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----EN---RPDAIVLDINMPVLDGVSVVTALRA   75 (233)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            34799999999999999999988776  243 5677777776553     35   799999997433  23445555544


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      .-..-.++++
T Consensus        76 ~~~~~~ii~l   85 (233)
T 1ys7_A           76 MDNDVPVCVL   85 (233)
T ss_dssp             TTCCCCEEEE
T ss_pred             cCCCCCEEEE
Confidence            3222334444

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=88.97  E-value=2.9  Score=26.21  Aligned_cols=84  Identities=10%  Similarity=0.003  Sum_probs=52.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh--hhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD--EKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~--~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      .+|..+|-++......++.++..|.... .....+..+.+..+...  .+...   .+|+|++|....  ...++++.+.
T Consensus         3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~---~~dlvi~d~~~~~~~g~~~~~~l~   78 (140)
T 1k68_A            3 KKIFLVEDNKADIRLIQEALANSTVPHE-VVTVRDGMEAMAYLRQEGEYANAS---RPDLILLXLNLPKKDGREVLAEIK   78 (140)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHTCSSCCE-EEEECSHHHHHHHHTTCGGGGSCC---CCSEEEECSSCSSSCHHHHHHHHH
T ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCce-EEEECCHHHHHHHHHcccccccCC---CCcEEEEecCCCcccHHHHHHHHH
Confidence            4788999999999999999998886322 33556677776655310  00004   799999997543  2344555555


Q ss_pred             hcc--cCCeEEEEe
Q 044253           88 TLF--KVGGIVIYD   99 (139)
Q Consensus        88 ~lL--~~gG~ii~~   99 (139)
                      ..-  ..-.++++.
T Consensus        79 ~~~~~~~~pii~ls   92 (140)
T 1k68_A           79 SDPTLKRIPVVVLS   92 (140)
T ss_dssp             HSTTGGGSCEEEEE
T ss_pred             cCcccccccEEEEe
Confidence            432  233455553

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=88.96  E-value=0.79  Score=35.86  Aligned_cols=79  Identities=6%  Similarity=-0.059  Sum_probs=46.4

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .++ +|++++.+++.++.+++    .|...-+.....|..+.+.++..    ..   .+|+||--....  ...++.+.+
T Consensus       236 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~i~~~t~----g~---g~D~vid~~g~~--~~~~~~~~~  302 (404)
T 3ip1_A          236 AGASKVILSEPSEVRRNLAKE----LGADHVIDPTKENFVEAVLDYTN----GL---GAKLFLEATGVP--QLVWPQIEE  302 (404)
T ss_dssp             TTCSEEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHTT----TC---CCSEEEECSSCH--HHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHH----cCCCEEEcCCCCCHHHHHHHHhC----CC---CCCEEEECCCCc--HHHHHHHHH
Confidence            355 89999999999988875    35431111122344444444321    24   699998654432  123334444


Q ss_pred             c----ccCCeEEEEeCC
Q 044253           89 L----FKVGGIVIYDNT  101 (139)
Q Consensus        89 l----L~~gG~ii~~~~  101 (139)
                      .    ++++|.++.-..
T Consensus       303 ~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          303 VIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHCSCCCCEEEECSC
T ss_pred             HHHhccCCCcEEEEeCC
Confidence            4    499999987544

>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}

Probab=88.94  E-value=1.1  Score=29.21  Aligned_cols=67  Identities=16%  Similarity=0.112  Sum_probs=44.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~   87 (139)
                      +..+|..||-++......++.++..|+  .+. ...+..+.+..+.     ..   .+|+|++|.....  -.++++.+.
T Consensus        13 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvl~D~~mp~~~g~~~~~~lr   81 (143)
T 3m6m_D           13 RSMRMLVADDHEANRMVLQRLLEKAGH--KVL-CVNGAEQVLDAMA-----EE---DYDAVIVDLHMPGMNGLDMLKQLR   81 (143)
T ss_dssp             --CEEEEECSSHHHHHHHHHHHHC--C--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence            346899999999999999999988775  243 4567777766553     35   7999999974332  334444443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.93  E-value=1.3  Score=35.53  Aligned_cols=83  Identities=8%  Similarity=-0.021  Sum_probs=51.4

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------------CCcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------------DLKINLMESRALPALDQLLKDEKIHFFFENF   67 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~f   67 (139)
                      |+|...+..+.+|+++|++++.++..++.  ....              ..++++ ..|..+.+          .   ..
T Consensus        16 ~lA~~La~~G~~V~~~D~~~~~v~~l~~g--~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~----------~---~a   79 (450)
T 3gg2_A           16 VSATCFAELGANVRCIDTDRNKIEQLNSG--TIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV----------P---EA   79 (450)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHHHT--CSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG----------G---GC
T ss_pred             HHHHHHHhcCCEEEEEECCHHHHHHHHcC--CCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH----------h---cC
Confidence            34555666678999999999988876652  1100              123333 23443321          3   57


Q ss_pred             eEEEEcCCCc----------chHHHHHHHhhcccCCeEEEEeC
Q 044253           68 DYAFVDAHKD----------NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        68 D~If~D~~~~----------~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      |+||+-.+..          .....++.+.+.|++|.+++...
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence            9999865433          34566777888888887777544

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=88.92  E-value=0.77  Score=35.02  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=47.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      +++|++++.+++..+.+++    .|...-+.....+..+.+.++.     . .   .+|+||-....   ...++.+.+.
T Consensus       196 Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-----~~~---~~d~vi~~~g~---~~~~~~~~~~  260 (347)
T 1jvb_A          196 GATIIGVDVREEAVEAAKR----AGADYVINASMQDPLAEIRRIT-----ESK---GVDAVIDLNNS---EKTLSVYPKA  260 (347)
T ss_dssp             CCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TTS---CEEEEEESCCC---HHHHTTGGGG
T ss_pred             CCeEEEEcCCHHHHHHHHH----hCCCEEecCCCccHHHHHHHHh-----cCC---CceEEEECCCC---HHHHHHHHHH
Confidence            6789999999998888864    3532111111123333233331     2 4   79999876543   3356778899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       261 l~~~G~iv~~g  271 (347)
T 1jvb_A          261 LAKQGKYVMVG  271 (347)
T ss_dssp             EEEEEEEEECC
T ss_pred             HhcCCEEEEEC
Confidence            99999998643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=88.83  E-value=0.75  Score=35.18  Aligned_cols=76  Identities=16%  Similarity=0.103  Sum_probs=47.9

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .++ +|++++.+++..+.+++.   .|....+.....+..+.+.+..     ..   .+|+||-....    ..++.+.+
T Consensus       184 ~Ga~~Vi~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~~~~~~~~-----~~---~~d~vi~~~G~----~~~~~~~~  248 (357)
T 2zb4_A          184 LGCSRVVGICGTHEKCILLTSE---LGFDAAINYKKDNVAEQLRESC-----PA---GVDVYFDNVGG----NISDTVIS  248 (357)
T ss_dssp             TTCSEEEEEESCHHHHHHHHHT---SCCSEEEETTTSCHHHHHHHHC-----TT---CEEEEEESCCH----HHHHHHHH
T ss_pred             CCCCeEEEEeCCHHHHHHHHHH---cCCceEEecCchHHHHHHHHhc-----CC---CCCEEEECCCH----HHHHHHHH
Confidence            466 899999998887777542   4542111111223333333321     23   69999876652    46778889


Q ss_pred             cccCCeEEEEeC
Q 044253           89 LFKVGGIVIYDN  100 (139)
Q Consensus        89 lL~~gG~ii~~~  100 (139)
                      .|+++|.++.-.
T Consensus       249 ~l~~~G~iv~~G  260 (357)
T 2zb4_A          249 QMNENSHIILCG  260 (357)
T ss_dssp             TEEEEEEEEECC
T ss_pred             HhccCcEEEEEC
Confidence            999999998643

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.75  E-value=3.3  Score=26.47  Aligned_cols=74  Identities=8%  Similarity=0.012  Sum_probs=49.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..+|-++......+..++..|+  .+ ....+..+.+..+.     ..   .+|+|++|....  .-..+++.+... 
T Consensus         6 ~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~a~~~l~-----~~---~~dlvllD~~l~~~~g~~l~~~l~~~-   73 (137)
T 3cfy_A            6 RVLLVEDSTSLAILYKQYVKDEPY--DI-FHVETGRDAIQFIE-----RS---KPQLIILDLKLPDMSGEDVLDWINQN-   73 (137)
T ss_dssp             EEEEECSCTTHHHHHHHHTTTSSS--EE-EEESSHHHHHHHHH-----HH---CCSEEEECSBCSSSBHHHHHHHHHHT-
T ss_pred             eEEEEeCCHHHHHHHHHHHHhcCc--eE-EEeCCHHHHHHHHH-----hc---CCCEEEEecCCCCCCHHHHHHHHHhc-
Confidence            799999999999999998877665  24 35667777766553     34   799999996432  234455555443 


Q ss_pred             cCCe-EEEE
Q 044253           91 KVGG-IVIY   98 (139)
Q Consensus        91 ~~gG-~ii~   98 (139)
                      .+.. ++++
T Consensus        74 ~~~~~ii~l   82 (137)
T 3cfy_A           74 DIPTSVIIA   82 (137)
T ss_dssp             TCCCEEEEE
T ss_pred             CCCCCEEEE
Confidence            3443 4444

>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}

Probab=88.65  E-value=3.3  Score=26.38  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=50.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ..+|..+|-++......++.++.. ++  .+.....++.+.+..+.     ..   .+|+|++|....  ....+++.+.
T Consensus         9 ~~~iLivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~al~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~   78 (143)
T 2qv0_A            9 KMKVIIVEDEFLAQQELSWLINTHSQM--EIVGSFDDGLDVLKFLQ-----HN---KVDAIFLDINIPSLDGVLLAQNIS   78 (143)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHHSCC--EEEEEESCHHHHHHHHH-----HC---CCSEEEECSSCSSSCHHHHHHHHT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHH-----hC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence            457999999999999999999876 43  22235677777766553     35   799999997433  2344555554


Q ss_pred             hcccCCe-EEEEe
Q 044253           88 TLFKVGG-IVIYD   99 (139)
Q Consensus        88 ~lL~~gG-~ii~~   99 (139)
                      .. .+.. ++++.
T Consensus        79 ~~-~~~~~ii~~s   90 (143)
T 2qv0_A           79 QF-AHKPFIVFIT   90 (143)
T ss_dssp             TS-TTCCEEEEEE
T ss_pred             cc-CCCceEEEEe
Confidence            43 3444 44443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=88.45  E-value=1.4  Score=33.93  Aligned_cols=76  Identities=11%  Similarity=0.063  Sum_probs=48.3

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .++ +|++++.+++..+.+++    .|...-+....  .+..+.+.+..     ..   .+|+||--...   ...++.+
T Consensus       214 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~t-----~g---g~Dvvid~~g~---~~~~~~~  278 (373)
T 1p0f_A          214 AGASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEKT-----NG---GVDYAVECAGR---IETMMNA  278 (373)
T ss_dssp             HTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----CC---CCCEEEECCCC---HHHHHHH
Confidence            355 79999999999988864    56531111111  23444444332     24   79999865432   3457788


Q ss_pred             hhcccCC-eEEEEeC
Q 044253           87 MTLFKVG-GIVIYDN  100 (139)
Q Consensus        87 ~~lL~~g-G~ii~~~  100 (139)
                      .+.|+++ |.++.-.
T Consensus       279 ~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          279 LQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HHTBCTTTCEEEECC
T ss_pred             HHHHhcCCCEEEEEc
Confidence            8999999 9998644

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=88.41  E-value=4.4  Score=27.76  Aligned_cols=75  Identities=13%  Similarity=0.090  Sum_probs=50.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..||-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|...+  +..++++.+...
T Consensus         5 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvl~D~~lp~~~g~~~~~~l~~~   73 (208)
T 1yio_A            5 PTVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHRR-----PE---QHGCLVLDMRMPGMSGIELQEQLTAI   73 (208)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHCC-----TT---SCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCc--eEE-EcCCHHHHHHhhh-----cc---CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence            4789999999999999999988775  244 5677777776542     34   799999997543  234455555443


Q ss_pred             ccCC-eEEEE
Q 044253           90 FKVG-GIVIY   98 (139)
Q Consensus        90 L~~g-G~ii~   98 (139)
                       .++ .++++
T Consensus        74 -~~~~~ii~l   82 (208)
T 1yio_A           74 -SDGIPIVFI   82 (208)
T ss_dssp             -TCCCCEEEE
T ss_pred             -CCCCCEEEE
Confidence             233 34444

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=88.37  E-value=0.46  Score=37.36  Aligned_cols=56  Identities=7%  Similarity=-0.062  Sum_probs=38.1

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCCc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      .|.++|+++.+++..+.|+.      ...++++|+.+.... +........   .+|+|+.++++.
T Consensus        26 ~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~---~~D~i~ggpPCQ   82 (376)
T 3g7u_A           26 VKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDM---PIDGIIGGPPCQ   82 (376)
T ss_dssp             EEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCC---CCCEEEECCCCC
T ss_pred             EEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCC---CeeEEEecCCCC
Confidence            46799999999999998853      357888898765221 110000024   799999998753

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=88.34  E-value=0.91  Score=36.75  Aligned_cols=85  Identities=6%  Similarity=-0.081  Sum_probs=51.8

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHH---HcCC---------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIK---KVEV---------DLKINLMESRALPALDQLLKDEKIHFFFENFDY   69 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~---~~g~---------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~   69 (139)
                      |+|...+..+.+|+++|++++.++..++...   .-|+         ..++++ ..|..+.+          .   ..|+
T Consensus        22 ~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~----------~---~aDv   87 (478)
T 2y0c_A           22 VTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV----------A---HGDV   87 (478)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH----------H---HCSE
T ss_pred             HHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh----------h---cCCE
Confidence            4566667778899999999998887765310   0010         112333 23433322          2   5789


Q ss_pred             EEEcCCC----------cchHHHHHHHhhcccCCeEEEEeC
Q 044253           70 AFVDAHK----------DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        70 If~D~~~----------~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ||+-.+.          ......++.+.+.|++|.+++...
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             EEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            9986543          334556777778898888776543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=88.22  E-value=0.82  Score=34.87  Aligned_cols=77  Identities=14%  Similarity=-0.003  Sum_probs=48.1

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .++ +|++++.+++..+.+++    .|...-+.....+..+.+.++..    ..   .+|+||--...   ...++.+.+
T Consensus       190 ~Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----g~---g~D~vid~~g~---~~~~~~~~~  255 (348)
T 2d8a_A          190 SGAYPVIVSEPSDFRRELAKK----VGADYVINPFEEDVVKEVMDITD----GN---GVDVFLEFSGA---PKALEQGLQ  255 (348)
T ss_dssp             TTCCSEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHTT----TS---CEEEEEECSCC---HHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHH----hCCCEEECCCCcCHHHHHHHHcC----CC---CCCEEEECCCC---HHHHHHHHH
Confidence            456 89999999998888864    35421111112344444433321    24   69999865542   345677889


Q ss_pred             cccCCeEEEEeC
Q 044253           89 LFKVGGIVIYDN  100 (139)
Q Consensus        89 lL~~gG~ii~~~  100 (139)
                      .|+++|.++.-.
T Consensus       256 ~l~~~G~iv~~g  267 (348)
T 2d8a_A          256 AVTPAGRVSLLG  267 (348)
T ss_dssp             HEEEEEEEEECC
T ss_pred             HHhcCCEEEEEc
Confidence            999999998643

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=88.20  E-value=3.2  Score=25.71  Aligned_cols=74  Identities=15%  Similarity=0.060  Sum_probs=49.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..++..|+  .+ ....+..+.+..+.     ..   ++|+|++|....  ...++++.+...
T Consensus         4 ~~ilivdd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~~   72 (124)
T 1srr_A            4 EKILIVDDQSGIRILLNEVFNKEGY--QT-FQAANGLQALDIVT-----KE---RPDLVLLDMKIPGMDGIEILKRMKVI   72 (124)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHH-----HH---CCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHCCc--EE-EEeCCHHHHHHHHh-----cc---CCCEEEEecCCCCCCHHHHHHHHHHh
Confidence            4789999999999999999987775  24 35667777766553     24   799999997433  233455555443


Q ss_pred             ccCCeEEE
Q 044253           90 FKVGGIVI   97 (139)
Q Consensus        90 L~~gG~ii   97 (139)
                       .+...++
T Consensus        73 -~~~~~ii   79 (124)
T 1srr_A           73 -DENIRVI   79 (124)
T ss_dssp             -CTTCEEE
T ss_pred             -CCCCCEE
Confidence             3444443

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=88.18  E-value=3.5  Score=26.14  Aligned_cols=68  Identities=9%  Similarity=0.008  Sum_probs=49.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ...+|..+|-++......++.++..|+  .+ ....+..+.+..+.     ..   .+|+|++|....  ....+++.+.
T Consensus         6 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l~   74 (142)
T 3cg4_A            6 HKGDVMIVDDDAHVRIAVKTILSDAGF--HI-ISADSGGQCIDLLK-----KG---FSGVVLLDIMMPGMDGWDTIRAIL   74 (142)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEESSHHHHHHHHH-----TC---CCEEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCe--EE-EEeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence            456899999999999999999998876  24 35667777766553     35   799999997533  2344556555


Q ss_pred             h
Q 044253           88 T   88 (139)
Q Consensus        88 ~   88 (139)
                      .
T Consensus        75 ~   75 (142)
T 3cg4_A           75 D   75 (142)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=88.16  E-value=0.28  Score=34.09  Aligned_cols=61  Identities=8%  Similarity=0.067  Sum_probs=39.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEE-EcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAF-VDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If-~D~~~~~~~~~~~~~~~   88 (139)
                      .+..|+++|+++.+++                +++.|++....++      -.   .||+|+ +.|+..-...+++ +.+
T Consensus        58 ~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~------Y~---~~DLIYsirPP~El~~~i~~-lA~  111 (153)
T 2k4m_A           58 SKVDLVLTDIKPSHGG----------------IVRDDITSPRMEI------YR---GAALIYSIRPPAEIHSSLMR-VAD  111 (153)
T ss_dssp             SCCEEEEECSSCSSTT----------------EECCCSSSCCHHH------HT---TEEEEEEESCCTTTHHHHHH-HHH
T ss_pred             CCCeEEEEECCccccc----------------eEEccCCCCcccc------cC---CcCEEEEcCCCHHHHHHHHH-HHH
Confidence            4567999999999888                8888887643332      25   799994 6776544443333 333


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      .  -|.-+++
T Consensus       112 ~--v~adliI  119 (153)
T 2k4m_A          112 A--VGARLII  119 (153)
T ss_dssp             H--HTCEEEE
T ss_pred             H--cCCCEEE
Confidence            2  2444444

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=88.09  E-value=0.58  Score=35.54  Aligned_cols=75  Identities=17%  Similarity=0.164  Sum_probs=47.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+++|++++.+++.++.+++   ..|...-+.+.. .+..+.+....     ..   .+|+||-....    ..++.+.+
T Consensus       179 ~G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~~-----~~---~~d~vi~~~g~----~~~~~~~~  243 (345)
T 2j3h_A          179 MGCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEESDLTAALKRCF-----PN---GIDIYFENVGG----KMLDAVLV  243 (345)
T ss_dssp             TTCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCSCSHHHHHHHC-----TT---CEEEEEESSCH----HHHHHHHT
T ss_pred             CCCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHHHHHHHHHHHh-----CC---CCcEEEECCCH----HHHHHHHH
Confidence            46789999999988887763   235421111111 23444444331     24   69999876542    36778889


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .|+++|.++.-
T Consensus       244 ~l~~~G~~v~~  254 (345)
T 2j3h_A          244 NMNMHGRIAVC  254 (345)
T ss_dssp             TEEEEEEEEEC
T ss_pred             HHhcCCEEEEE
Confidence            99999999864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=87.91  E-value=0.48  Score=36.51  Aligned_cols=77  Identities=14%  Similarity=-0.005  Sum_probs=49.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+++|++++.+++.++.+++    .|...-+. .. .+..+.+.++..    ..   .+|+||--....    .++.+.+
T Consensus       212 ~Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~~~v~~~~~----g~---g~D~vid~~g~~----~~~~~~~  275 (363)
T 3uog_A          212 TGAEVIVTSSSREKLDRAFA----LGADHGIN-RLEEDWVERVYALTG----DR---GADHILEIAGGA----GLGQSLK  275 (363)
T ss_dssp             TTCEEEEEESCHHHHHHHHH----HTCSEEEE-TTTSCHHHHHHHHHT----TC---CEEEEEEETTSS----CHHHHHH
T ss_pred             cCCEEEEEecCchhHHHHHH----cCCCEEEc-CCcccHHHHHHHHhC----CC---CceEEEECCChH----HHHHHHH
Confidence            46799999999998888765    46532122 11 344444444321    34   799998655422    3566788


Q ss_pred             cccCCeEEEEeCCC
Q 044253           89 LFKVGGIVIYDNTL  102 (139)
Q Consensus        89 lL~~gG~ii~~~~~  102 (139)
                      .|+++|.++.-...
T Consensus       276 ~l~~~G~iv~~G~~  289 (363)
T 3uog_A          276 AVAPDGRISVIGVL  289 (363)
T ss_dssp             HEEEEEEEEEECCC
T ss_pred             HhhcCCEEEEEecC
Confidence            99999999875443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.91  E-value=1  Score=34.94  Aligned_cols=80  Identities=13%  Similarity=0.043  Sum_probs=49.3

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC-hHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESR-ALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------   78 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d-a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------   78 (139)
                      .++ +|+++|.+++.++.+++    .|. +-+.....+ ..+.+.++..    ..   .+|+||--.....         
T Consensus       208 ~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~v~~~t~----g~---g~Dvvid~~G~~~~~~~~~~~~  275 (398)
T 1kol_A          208 LGAAVVIVGDLNPARLAHAKA----QGF-EIADLSLDTPLHEQIAALLG----EP---EVDCAVDAVGFEARGHGHEGAK  275 (398)
T ss_dssp             TTCSEEEEEESCHHHHHHHHH----TTC-EEEETTSSSCHHHHHHHHHS----SS---CEEEEEECCCTTCBCSSTTGGG
T ss_pred             CCCCeEEEEcCCHHHHHHHHH----cCC-cEEccCCcchHHHHHHHHhC----CC---CCCEEEECCCCccccccccccc
Confidence            355 69999999999988864    465 222211222 3334443321    24   6999986543221         


Q ss_pred             ---hHHHHHHHhhcccCCeEEEEeCC
Q 044253           79 ---YRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        79 ---~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                         ....++.+++.|+++|.++.-..
T Consensus       276 ~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          276 HEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHHhcCCEEEEecc
Confidence               12367788899999999986543

>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}

Probab=87.71  E-value=3.8  Score=26.07  Aligned_cols=77  Identities=12%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|....  ....+++.+..
T Consensus         4 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvllD~~l~~~~g~~l~~~l~~   72 (136)
T 2qzj_A            4 QTKILIIDGDKDNCQKLKGFLEEKGI--SID-LAYNCEEAIGKIF-----SN---KYDLIFLEIILSDGDGWTLCKKIRN   72 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HC---CCSEEEEESEETTEEHHHHHHHHHT
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHcc
Confidence            35789999999999999999987775  343 5677777776553     35   799999997432  23445555554


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .- .-.++++.
T Consensus        73 ~~-~~~ii~ls   82 (136)
T 2qzj_A           73 VT-TCPIVYMT   82 (136)
T ss_dssp             TC-CCCEEEEE
T ss_pred             CC-CCCEEEEE
Confidence            32 33455553

>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*

Probab=87.57  E-value=3.4  Score=25.25  Aligned_cols=76  Identities=14%  Similarity=0.022  Sum_probs=49.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..+...|+  .+. ...+..+.+..+.     ..   .+|+|++|....  ...++++.+.+ 
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~-   69 (120)
T 2a9o_A            2 KKILIVDDEKPISDIIKFNMTKEGY--EVV-TAFNGREALEQFE-----AE---QPDIIILDLMLPEIDGLEVAKTIRK-   69 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHH-
T ss_pred             ceEEEEcCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHHH-----hC---CCCEEEEeccCCCCCHHHHHHHHHh-
Confidence            3688999999999999999988776  243 5667777766553     34   799999997433  22344555544 


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      ...-.++++.
T Consensus        70 ~~~~~ii~~s   79 (120)
T 2a9o_A           70 TSSVPILMLS   79 (120)
T ss_dssp             HCCCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            2333445543

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=87.53  E-value=3.8  Score=25.86  Aligned_cols=77  Identities=10%  Similarity=0.025  Sum_probs=50.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..++..|.. .......+..+.+..+.     ..   .+|+|++|....  .-.++++.+...
T Consensus         4 ~~Ilivdd~~~~~~~l~~~l~~~~~~-~~v~~~~~~~~al~~~~-----~~---~~dlvilD~~lp~~~g~~~~~~l~~~   74 (133)
T 3b2n_A            4 TSLIIAEDQNMLRQAMVQLIKLHGDF-EILADTDNGLDAMKLIE-----EY---NPNVVILDIEMPGMTGLEVLAEIRKK   74 (133)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHSSE-EEEEEESCHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHHT
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCc-EEEEEcCCHHHHHHHHh-----hc---CCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            47899999999999999998876521 23344667777766553     34   799999997543  234455555543


Q ss_pred             ccCCeE-EEE
Q 044253           90 FKVGGI-VIY   98 (139)
Q Consensus        90 L~~gG~-ii~   98 (139)
                       .++.. +++
T Consensus        75 -~~~~~ii~l   83 (133)
T 3b2n_A           75 -HLNIKVIIV   83 (133)
T ss_dssp             -TCSCEEEEE
T ss_pred             -CCCCcEEEE
Confidence             34444 444

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=87.52  E-value=1.6  Score=33.59  Aligned_cols=76  Identities=12%  Similarity=0.137  Sum_probs=47.9

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .++ +|++++.+++..+.+++    .|...-+....  .+..+.+.++.     ..   .+|+||--...   ...++.+
T Consensus       214 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~-----~~---g~D~vid~~g~---~~~~~~~  278 (374)
T 2jhf_A          214 AGAARIIGVDINKDKFAKAKE----VGATECVNPQDYKKPIQEVLTEMS-----NG---GVDFSFEVIGR---LDTMVTA  278 (374)
T ss_dssp             TTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred             cCCCeEEEEcCCHHHHHHHHH----hCCceEecccccchhHHHHHHHHh-----CC---CCcEEEECCCC---HHHHHHH
Confidence            355 79999999999988864    46521111111  23444444332     24   69998765432   3456778


Q ss_pred             hhcccCC-eEEEEeC
Q 044253           87 MTLFKVG-GIVIYDN  100 (139)
Q Consensus        87 ~~lL~~g-G~ii~~~  100 (139)
                      .+.|+++ |.++.-.
T Consensus       279 ~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          279 LSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HHHBCTTTCEEEECS
T ss_pred             HHHhhcCCcEEEEec
Confidence            8999999 9998644

>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1

Probab=87.45  E-value=3.5  Score=25.36  Aligned_cols=75  Identities=9%  Similarity=0.077  Sum_probs=49.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|.....  -..+++.+.+ 
T Consensus         3 ~~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~~-   70 (122)
T 1zgz_A            3 HHIVIVEDEPVTQARLQSYFTQEGY--TVS-VTASGAGLREIMQ-----NQ---SVDLILLDINLPDENGLMLTRALRE-   70 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHT-
T ss_pred             cEEEEEECCHHHHHHHHHHHHHCCC--eEE-EecCHHHHHHHHh-----cC---CCCEEEEeCCCCCCChHHHHHHHHh-
Confidence            4688999999999999999988775  243 4566666665443     35   7999999975432  3345555554 


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      ...-.++++
T Consensus        71 ~~~~~ii~~   79 (122)
T 1zgz_A           71 RSTVGIILV   79 (122)
T ss_dssp             TCCCEEEEE
T ss_pred             cCCCCEEEE
Confidence            223334444

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=87.41  E-value=3.8  Score=25.73  Aligned_cols=76  Identities=12%  Similarity=-0.048  Sum_probs=50.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..+...|+  .+. ...+..+.+..+.     ..   .+|+|++|.....  -..+++.+...
T Consensus         4 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~~   72 (136)
T 1mvo_A            4 KKILVVDDEESIVTLLQYNLERSGY--DVI-TASDGEEALKKAE-----TE---KPDLIVLDVMLPKLDGIEVCKQLRQQ   72 (136)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCc--EEE-EecCHHHHHHHHh-----hc---CCCEEEEecCCCCCCHHHHHHHHHcC
Confidence            5789999999999999999988776  243 5667777766543     34   7999999975432  33455555443


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      -..-.++++
T Consensus        73 ~~~~~ii~~   81 (136)
T 1mvo_A           73 KLMFPILML   81 (136)
T ss_dssp             TCCCCEEEE
T ss_pred             CCCCCEEEE
Confidence            222234444

>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A

Probab=87.37  E-value=3.7  Score=25.53  Aligned_cols=68  Identities=4%  Similarity=-0.053  Sum_probs=46.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      ..+|..+|-++......+..++..|+. . .....+..+.+..+.     ..   .+|+|++|...+.  -.++++.+..
T Consensus         6 ~~~ilivdd~~~~~~~l~~~L~~~g~~-~-v~~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~   75 (129)
T 1p6q_A            6 KIKVLIVDDQVTSRLLLGDALQQLGFK-Q-ITAAGDGEQGMKIMA-----QN---PHHLVISDFNMPKMDGLGLLQAVRA   75 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCS-C-EECCSSHHHHHHHHH-----TS---CCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred             cCeEEEEcCCHHHHHHHHHHHHHCCCc-E-EEecCCHHHHHHHHH-----cC---CCCEEEEeCCCCCCCHHHHHHHHhc
Confidence            357999999999999999999877752 2 334556777765543     35   7999999975432  2344555543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=87.32  E-value=1.1  Score=34.23  Aligned_cols=76  Identities=9%  Similarity=-0.026  Sum_probs=47.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-.....    .+..+.+.
T Consensus       186 ~Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~---~~d~vi~~~G~~----~~~~~~~~  250 (354)
T 2j8z_A          186 AGAIPLVTAGSQKKLQMAEK----LGAAAGFNYKKEDFSEATLKFTK----GA---GVNLILDCIGGS----YWEKNVNC  250 (354)
T ss_dssp             TTCEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TS---CEEEEEESSCGG----GHHHHHHH
T ss_pred             cCCEEEEEeCCHHHHHHHHH----cCCcEEEecCChHHHHHHHHHhc----CC---CceEEEECCCch----HHHHHHHh
Confidence            46789999999998888753    35421111112233333333211    24   699998776542    35667789


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       251 l~~~G~iv~~G  261 (354)
T 2j8z_A          251 LALDGRWVLYG  261 (354)
T ss_dssp             EEEEEEEEECC
T ss_pred             ccCCCEEEEEe
Confidence            99999998744

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=87.23  E-value=2.8  Score=27.50  Aligned_cols=75  Identities=8%  Similarity=-0.119  Sum_probs=47.6

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      ..+.+|+.+|.+++.++.+++    .|    +.++.+|+.+.  +.+..     -.   .+|+|++-.+.......+-..
T Consensus        28 ~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~-----i~---~ad~vi~~~~~~~~n~~~~~~   91 (140)
T 3fwz_A           28 ASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAH-----LE---CAKWLILTIPNGYEAGEIVAS   91 (140)
T ss_dssp             HTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTT-----GG---GCSEEEECCSCHHHHHHHHHH
T ss_pred             HCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcC-----cc---cCCEEEEECCChHHHHHHHHH
Confidence            346789999999998887764    23    56788887643  33321     24   799999876533222222234


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      .+.+.++..+++.
T Consensus        92 a~~~~~~~~iiar  104 (140)
T 3fwz_A           92 ARAKNPDIEIIAR  104 (140)
T ss_dssp             HHHHCSSSEEEEE
T ss_pred             HHHHCCCCeEEEE
Confidence            4666777777763

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=87.20  E-value=1.9  Score=33.09  Aligned_cols=77  Identities=13%  Similarity=0.125  Sum_probs=48.6

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .++ +|++++.+++..+.+++    .|...-+....  .+..+.+.++.     ..   .+|+||--...   ...++.+
T Consensus       213 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~~---g~D~vid~~g~---~~~~~~~  277 (373)
T 2fzw_A          213 AGASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT-----DG---GVDYSFECIGN---VKVMRAA  277 (373)
T ss_dssp             HTCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred             cCCCeEEEEcCCHHHHHHHHH----cCCceEeccccccccHHHHHHHHh-----CC---CCCEEEECCCc---HHHHHHH
Confidence            355 79999999999998874    35421111111  23444444432     24   69999865432   3457788


Q ss_pred             hhcccCC-eEEEEeCC
Q 044253           87 MTLFKVG-GIVIYDNT  101 (139)
Q Consensus        87 ~~lL~~g-G~ii~~~~  101 (139)
                      ++.|+++ |.++.-..
T Consensus       278 ~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          278 LEACHKGWGVSVVVGV  293 (373)
T ss_dssp             HHTBCTTTCEEEECSC
T ss_pred             HHhhccCCcEEEEEec
Confidence            8999999 99986443

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=86.94  E-value=0.6  Score=35.56  Aligned_cols=76  Identities=14%  Similarity=0.086  Sum_probs=47.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-.... .   .++.+.+.
T Consensus       190 ~G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~~----~~---~~d~vi~~~g~-~---~~~~~~~~  254 (343)
T 2eih_A          190 FGARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLTG----GK---GADKVVDHTGA-L---YFEGVIKA  254 (343)
T ss_dssp             TTCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHTT----TT---CEEEEEESSCS-S---SHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHhC----CC---CceEEEECCCH-H---HHHHHHHh
Confidence            46789999999999888864    35421111112233333333211    24   79999876652 2   35667789


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       255 l~~~G~~v~~g  265 (343)
T 2eih_A          255 TANGGRIAIAG  265 (343)
T ss_dssp             EEEEEEEEESS
T ss_pred             hccCCEEEEEe
Confidence            99999998643

>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...

Probab=86.84  E-value=4  Score=25.34  Aligned_cols=68  Identities=12%  Similarity=0.074  Sum_probs=47.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      ..+|..+|-++......+..++..|+.  ......+..+.+..+.     ..   .+|+|++|...+.  -.++++.+..
T Consensus         4 ~~~ilivdd~~~~~~~l~~~l~~~~~~--~v~~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~l~~~l~~   73 (128)
T 1jbe_A            4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQ-----AG---GYGFVISDWNMPNMDGLELLKTIRA   73 (128)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHT-----TC---CCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred             ccEEEEECCCHHHHHHHHHHHHHcCCc--EEEeeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            357899999999999999999887762  2334567777766553     35   7999999975432  3344555543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=86.74  E-value=2.1  Score=32.76  Aligned_cols=79  Identities=11%  Similarity=-0.029  Sum_probs=48.0

Q ss_pred             hhcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           10 FIYF-IVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .+++ |++++.+++..+.+++. .    ..-+.+..  .+..++...+....+ ..   .+|+||--...   ...++.+
T Consensus       202 ~Ga~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~t~-g~---g~Dvvid~~g~---~~~~~~~  269 (363)
T 3m6i_A          202 AGACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVESFG-GI---EPAVALECTGV---ESSIAAA  269 (363)
T ss_dssp             TTCCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHHTS-SC---CCSEEEECSCC---HHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHHhC-CC---CCCEEEECCCC---hHHHHHH
Confidence            3555 99999999999999875 1    12233321  122333222221111 24   79999865442   3356778


Q ss_pred             hhcccCCeEEEEeC
Q 044253           87 MTLFKVGGIVIYDN  100 (139)
Q Consensus        87 ~~lL~~gG~ii~~~  100 (139)
                      .+.|+++|.++.-.
T Consensus       270 ~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          270 IWAVKFGGKVFVIG  283 (363)
T ss_dssp             HHHSCTTCEEEECC
T ss_pred             HHHhcCCCEEEEEc
Confidence            89999999998744

>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A

Probab=86.73  E-value=1.7  Score=32.48  Aligned_cols=56  Identities=7%  Similarity=0.045  Sum_probs=45.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      .+|..+|-++......+..++..|+  .+.....|..+.+..+.     ..   +||+|++|...+
T Consensus       161 ~rILvVdD~~~~~~~l~~~L~~~g~--~v~~~a~~g~eAl~~~~-----~~---~~dlvl~D~~MP  216 (286)
T 3n0r_A          161 TEVLIIEDEPVIAADIEALVRELGH--DVTDIAATRGEALEAVT-----RR---TPGLVLADIQLA  216 (286)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HC---CCSEEEEESCCT
T ss_pred             CcEEEEcCCHHHHHHHHHHhhccCc--eEEEEeCCHHHHHHHHH-----hC---CCCEEEEcCCCC
Confidence            4689999999999999999999986  24436788888887664     35   899999996443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.64  E-value=3.6  Score=31.69  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=46.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|..   .++...-.+.+.++      ..   .+|+||--.....   .++.+.+.
T Consensus       217 ~Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~------~~---g~Dvvid~~g~~~---~~~~~~~~  277 (369)
T 1uuf_A          217 MGAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------LK---SFDFILNTVAAPH---NLDDFTTL  277 (369)
T ss_dssp             TTCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------TT---CEEEEEECCSSCC---CHHHHHTT
T ss_pred             CCCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh------hc---CCCEEEECCCCHH---HHHHHHHH
Confidence            46789999999999998875    4542   22322222333333      24   7999986544321   25567899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       278 l~~~G~iv~~G  288 (369)
T 1uuf_A          278 LKRDGTMTLVG  288 (369)
T ss_dssp             EEEEEEEEECC
T ss_pred             hccCCEEEEec
Confidence            99999998643

>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*

Probab=86.59  E-value=1.5  Score=28.32  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      .+|..+|-++......++.++.. |+  .+.....+..+.+..+..    ..   .+|+|++|.....  -..+++.+..
T Consensus        14 ~~vlivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~al~~l~~----~~---~~dlvilD~~l~~~~g~~~~~~lr~   84 (145)
T 3kyj_B           14 YNVMIVDDAAMMRLYIASFIKTLPDF--KVVAQAANGQEALDKLAA----QP---NVDLILLDIEMPVMDGMEFLRHAKL   84 (145)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTCTTE--EEEEEESSHHHHHHHHHH----CT---TCCEEEECTTSCCCTTCHHHHHHHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEECCHHHHHHHHhc----CC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            46999999999999999998876 33  222357788887765532    23   5999999974322  2334554443


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      . .+..++++
T Consensus        85 ~-~~~~iiil   93 (145)
T 3kyj_B           85 K-TRAKICML   93 (145)
T ss_dssp             H-CCCEEC-C
T ss_pred             c-CCCCeEEE
Confidence            2 23444444

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=86.57  E-value=0.9  Score=34.87  Aligned_cols=76  Identities=14%  Similarity=0.085  Sum_probs=46.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++.++.+++    .|...-+.....+..+.+.+...    ..   .+|+||-....    ..+..+.+.
T Consensus       194 ~Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~~----~~---~~D~vi~~~G~----~~~~~~~~~  258 (351)
T 1yb5_A          194 YGLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVG----EK---GIDIIIEMLAN----VNLSKDLSL  258 (351)
T ss_dssp             TTCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHHC----TT---CEEEEEESCHH----HHHHHHHHH
T ss_pred             CCCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHcC----CC---CcEEEEECCCh----HHHHHHHHh
Confidence            46789999999988886653    45421111112233333333211    24   69999876542    246677899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       259 l~~~G~iv~~g  269 (351)
T 1yb5_A          259 LSHGGRVIVVG  269 (351)
T ss_dssp             EEEEEEEEECC
T ss_pred             ccCCCEEEEEe
Confidence            99999998643

>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}

Probab=86.52  E-value=1.8  Score=27.73  Aligned_cols=66  Identities=12%  Similarity=0.102  Sum_probs=46.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ..+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ..   .+|+|++|....  +-..+++.+.
T Consensus        10 ~~~iLivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~al~~l~-----~~---~~dlvllD~~lp~~~g~~~~~~l~   77 (140)
T 3c97_A           10 PLSVLIAEDNDICRLVAAKALEKCTN--DIT-VVTNGLQALQAYQ-----NR---QFDVIIMDIQMPVMDGLEAVSEIR   77 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHTTTCS--EEE-EESSHHHHHHHHH-----HS---CCSEEEECTTCCSSCHHHHHHHHH
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHcCC--ceE-EECCHHHHHHHHh-----cC---CCCEEEEeCCCCCCcHHHHHHHHH
Confidence            35799999999999999999887664  243 4577777776553     35   799999997433  2234444444

>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A

Probab=86.50  E-value=2.3  Score=26.31  Aligned_cols=65  Identities=9%  Similarity=0.003  Sum_probs=45.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      +|..+|-++......+..++..|+.  +. ...+..+.+..+.     ..   .+|+|++|....  ....+++.+..
T Consensus         3 ~ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~   69 (124)
T 1mb3_A            3 KVLIVEDNELNMKLFHDLLEAQGYE--TL-QTREGLSALSIAR-----EN---KPDLILMDIQLPEISGLEVTKWLKE   69 (124)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHHHH-----HH---CCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHcCcE--EE-EeCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHHc
Confidence            6888999999999999999987762  33 4567777765543     34   799999996433  22344555543

>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}

Probab=86.38  E-value=4.6  Score=25.59  Aligned_cols=74  Identities=15%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh-hcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE-KIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~-~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      ..+|..+|-++......++.++..|....+. ...+..+.+..+.... ....   .+|+|++|....  ....+++.+.
T Consensus         7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~-~~~~~~~a~~~l~~~~~~~~~---~~dlii~D~~l~~~~g~~~~~~l~   82 (143)
T 2qvg_A            7 KVDILYLEDDEVDIQSVERVFHKISSLIKIE-IAKSGNQALDMLYGRNKENKI---HPKLILLDINIPKMNGIEFLKELR   82 (143)
T ss_dssp             CCSEEEECCCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHTCTTCCCC---CCSEEEEETTCTTSCHHHHHHHHT
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHhCCCceEE-EECCHHHHHHHHHhcccccCC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence            3579999999999999999999888632343 4566777766553100 0004   799999997433  2334555554


Q ss_pred             h
Q 044253           88 T   88 (139)
Q Consensus        88 ~   88 (139)
                      .
T Consensus        83 ~   83 (143)
T 2qvg_A           83 D   83 (143)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}

Probab=86.30  E-value=3.7  Score=28.87  Aligned_cols=77  Identities=9%  Similarity=-0.047  Sum_probs=50.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..||-++......+..++..|-. .+.....+..+.+..+.     ..   .+|+|++|...+  +...+++.+...
T Consensus         2 ~~ILivdd~~~~~~~l~~~L~~~~~~-~vv~~~~~~~~al~~l~-----~~---~~dlvllD~~lp~~~g~~~~~~lr~~   72 (225)
T 3c3w_A            2 VKVFLVDDHEVVRRGLVDLLGADPEL-DVVGEAGSVAEAMARVP-----AA---RPDVAVLDVRLPDGNGIELCRDLLSR   72 (225)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTCTTE-EEEEEESSHHHHHHHHH-----HH---CCSEEEECSEETTEEHHHHHHHHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEECCHHHHHHHHh-----hc---CCCEEEEeCCCCCCCHHHHHHHHHHh
Confidence            36889999999999999999876511 12234677777776553     34   799999997432  334455555443


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                       .++..+++
T Consensus        73 -~~~~~ii~   80 (225)
T 3c3w_A           73 -MPDLRCLI   80 (225)
T ss_dssp             -CTTCEEEE
T ss_pred             -CCCCcEEE
Confidence             45555554

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=86.24  E-value=0.66  Score=35.99  Aligned_cols=78  Identities=10%  Similarity=0.043  Sum_probs=47.1

Q ss_pred             hh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC---hHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253           10 FI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESR---ALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus        10 ~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d---a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      .+ ++|++++.+++..+.+++    .|..   .++..+   -.++...+....+ ..   .+|+||--...   ...++.
T Consensus       218 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~~~-g~---g~Dvvid~~g~---~~~~~~  283 (380)
T 1vj0_A          218 LGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDITH-GR---GADFILEATGD---SRALLE  283 (380)
T ss_dssp             TTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHHTT-TS---CEEEEEECSSC---TTHHHH
T ss_pred             cCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHHhC-CC---CCcEEEECCCC---HHHHHH
Confidence            35 599999999998888763    5652   233322   2222222211100 24   69999865432   224667


Q ss_pred             HhhcccCCeEEEEeCC
Q 044253           86 LMTLFKVGGIVIYDNT  101 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~  101 (139)
                      +.+.|+++|.++.-..
T Consensus       284 ~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          284 GSELLRRGGFYSVAGV  299 (380)
T ss_dssp             HHHHEEEEEEEEECCC
T ss_pred             HHHHHhcCCEEEEEec
Confidence            7899999999986443

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=86.07  E-value=0.86  Score=29.11  Aligned_cols=54  Identities=2%  Similarity=-0.119  Sum_probs=40.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcC-CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVE-VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g-~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      ..+|..+|-++......+..++..| +  .+. ...+..+.+..+.     ..   ++|+|++|..
T Consensus        14 ~~~ilivdd~~~~~~~l~~~L~~~g~~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~D~~   68 (135)
T 3snk_A           14 RKQVALFSSDPNFKRDVATRLDALAIY--DVR-VSETDDFLKGPPA-----DT---RPGIVILDLG   68 (135)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHTSSE--EEE-EECGGGGGGCCCT-----TC---CCSEEEEEEE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhhcCCe--EEE-EeccHHHHHHHHh-----cc---CCCEEEEeCC
Confidence            3579999999999999999999887 5  233 4556666554442     35   7999999963

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=86.00  E-value=4.3  Score=24.86  Aligned_cols=76  Identities=12%  Similarity=-0.077  Sum_probs=49.5

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..+|-++......++.++..|+  .+. ...+..+.+..+.     ..   .+|+|++|....  .-.++++.+...-
T Consensus         2 ~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlil~D~~l~~~~g~~~~~~l~~~~   70 (121)
T 2pl1_A            2 RVLVVEDNALLRHHLKVQIQDAGH--QVD-DAEDAKEADYYLN-----EH---IPDIAIVDLGLPDEDGLSLIRRWRSND   70 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEECSCCSSSCHHHHHHHHHHTT
T ss_pred             eEEEEeCcHHHHHHHHHHHhhcCC--EEE-EeCCHHHHHHHHh-----cc---CCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence            578899999999999999988775  233 5566777665543     35   799999997543  2334555554433


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      ..-.++++.
T Consensus        71 ~~~~ii~~s   79 (121)
T 2pl1_A           71 VSLPILVLT   79 (121)
T ss_dssp             CCSCEEEEE
T ss_pred             CCCCEEEEe
Confidence            333455543

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=85.96  E-value=4.5  Score=25.12  Aligned_cols=77  Identities=12%  Similarity=0.042  Sum_probs=51.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|...+  .-..+++.+..
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~   71 (126)
T 1dbw_A            3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DV---RNGVLVTDLRMPDMSGVELLRNLGD   71 (126)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GC---CSEEEEEECCSTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHh-----cC---CCCEEEEECCCCCCCHHHHHHHHHh
Confidence            35789999999999999999988776  243 5667777766543     35   799999997433  23345555544


Q ss_pred             cccCC-eEEEEe
Q 044253           89 LFKVG-GIVIYD   99 (139)
Q Consensus        89 lL~~g-G~ii~~   99 (139)
                      . .++ .++++.
T Consensus        72 ~-~~~~~ii~~s   82 (126)
T 1dbw_A           72 L-KINIPSIVIT   82 (126)
T ss_dssp             T-TCCCCEEEEE
T ss_pred             c-CCCCCEEEEE
Confidence            3 344 344443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=85.86  E-value=2.6  Score=32.70  Aligned_cols=81  Identities=4%  Similarity=-0.117  Sum_probs=51.9

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHH------HcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIK------KVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~------~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      |...+..+.+|+.++++++.++..++.-.      ...+.+++++ ..|..+.+          .   ..|+||+-.+..
T Consensus        45 A~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~----------~---~aDvVilaVp~~  110 (356)
T 3k96_A           45 ALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL----------E---GVTDILIVVPSF  110 (356)
T ss_dssp             HHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH----------T---TCCEEEECCCHH
T ss_pred             HHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH----------h---cCCEEEECCCHH
Confidence            33445556789999999988777665311      1112223443 23444332          3   689999987665


Q ss_pred             chHHHHHHHhhcccCCeEEEE
Q 044253           78 NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~   98 (139)
                      .....++.+.+.++++.+++.
T Consensus       111 ~~~~vl~~i~~~l~~~~ivvs  131 (356)
T 3k96_A          111 AFHEVITRMKPLIDAKTRIAW  131 (356)
T ss_dssp             HHHHHHHHHGGGCCTTCEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEE
Confidence            667778888889988887664

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=85.77  E-value=4.1  Score=29.26  Aligned_cols=66  Identities=11%  Similarity=0.034  Sum_probs=47.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--HHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--RNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--~~~~~~~~~   88 (139)
                      .+|..||-++...+..+..++..|+   ......+..+.+..+.     ..   .+|+|++|...+..  .++++.+..
T Consensus        38 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~-----~~---~~DlvllD~~lp~~~G~~l~~~lr~  105 (249)
T 3q9s_A           38 QRILVIEDDHDIANVLRMDLTDAGY---VVDHADSAMNGLIKAR-----ED---HPDLILLDLGLPDFDGGDVVQRLRK  105 (249)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC---EEEEESSHHHHHHHHH-----HS---CCSEEEEECCSCHHHHHHHHHHHHT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC---EEEEeCCHHHHHHHHh-----cC---CCCEEEEcCCCCCCCHHHHHHHHHc
Confidence            4799999999999999999987775   2345677777776553     35   79999999865432  334444444

>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A

Probab=85.73  E-value=4.5  Score=24.88  Aligned_cols=75  Identities=9%  Similarity=0.065  Sum_probs=49.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..+|-++......+..++..|+  .+ ....+..+.+..+.     ..   .+|+|++|....  .-..+++.+...
T Consensus         4 ~~ilivdd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~~   72 (123)
T 1xhf_A            4 PHILIVEDELVTRNTLKSIFEAEGY--DV-FEATDGAEMHQILS-----EY---DINLVIMDINLPGKNGLLLARELREQ   72 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHH-----HS---CCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHhhCCc--EE-EEeCCHHHHHHHHh-----cC---CCCEEEEcCCCCCCCHHHHHHHHHhC
Confidence            4688999999999999999987776  24 35667777766543     35   799999997433  233455555443


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                       ..-.++++
T Consensus        73 -~~~~ii~~   80 (123)
T 1xhf_A           73 -ANVALMFL   80 (123)
T ss_dssp             -CCCEEEEE
T ss_pred             -CCCcEEEE
Confidence             23334444

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=85.68  E-value=1.7  Score=33.07  Aligned_cols=72  Identities=11%  Similarity=-0.051  Sum_probs=46.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|+++ .+++.++.+++    .|... +. ...+..+.+.+...    ..   .+|+||-....    ..++.+.+.
T Consensus       174 ~Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~~----~~---g~D~vid~~g~----~~~~~~~~~  235 (343)
T 3gaz_A          174 RGARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHTA----GQ---GFDLVYDTLGG----PVLDASFSA  235 (343)
T ss_dssp             TTCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHHT----TS---CEEEEEESSCT----HHHHHHHHH
T ss_pred             CCCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHhc----CC---CceEEEECCCc----HHHHHHHHH
Confidence            46789999 88888777754    46532 33 33344444443321    24   79988765542    357778889


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+++|.++.-
T Consensus       236 l~~~G~iv~~  245 (343)
T 3gaz_A          236 VKRFGHVVSC  245 (343)
T ss_dssp             EEEEEEEEES
T ss_pred             HhcCCeEEEE
Confidence            9999999864

>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}

Probab=85.61  E-value=4.2  Score=24.43  Aligned_cols=67  Identities=13%  Similarity=0.016  Sum_probs=47.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..+|-++...+..++.++..|+  ++. ...+..+.+..+.     ..   .+|+|++|....  ....+++.+...
T Consensus         2 ~~iliv~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~~~~l~-----~~---~~dlii~d~~~~~~~~~~~~~~l~~~   70 (119)
T 2j48_A            2 GHILLLEEEDEAATVVCEMLTAAGF--KVI-WLVDGSTALDQLD-----LL---QPIVILMAWPPPDQSCLLLLQHLREH   70 (119)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HH---CCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhCCc--EEE-EecCHHHHHHHHH-----hc---CCCEEEEecCCCCCCHHHHHHHHHhc
Confidence            3688899999999999999998886  344 4567777766553     34   799999997433  234455555443

>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A

Probab=85.52  E-value=6.4  Score=27.09  Aligned_cols=79  Identities=15%  Similarity=0.063  Sum_probs=50.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||-++......+..++..+- -.+.....++.+.+..+.     ..   .+|+|++|...+  +-..+++.+..
T Consensus         5 ~~~ilivdd~~~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~~~-----~~---~~dlvllD~~lp~~~g~~~~~~lr~   75 (215)
T 1a04_A            5 PATILLIDDHPMLRTGVKQLISMAPD-ITVVGEASNGEQGIELAE-----SL---DPDLILLDLNMPGMNGLETLDKLRE   75 (215)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHH-----HH---CCSEEEEETTSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCcHHHHHHHHHH
Confidence            45799999999999999888876531 123235677777776553     34   799999997543  23445555554


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      .-..-.++++
T Consensus        76 ~~~~~~ii~l   85 (215)
T 1a04_A           76 KSLSGRIVVF   85 (215)
T ss_dssp             SCCCSEEEEE
T ss_pred             hCCCCcEEEE
Confidence            4222334444

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=85.35  E-value=1.4  Score=33.21  Aligned_cols=73  Identities=12%  Similarity=0.065  Sum_probs=43.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+++|++++.+++.++.+++    .|.. .+ +-..+. .+.+..+.     ..   .+|+||-.....    .++.+.+
T Consensus       173 ~Ga~vi~~~~~~~~~~~~~~----lGa~-~~-i~~~~~~~~~~~~~~-----~~---~~d~vid~~g~~----~~~~~~~  234 (328)
T 1xa0_A          173 RGYTVEASTGKAAEHDYLRV----LGAK-EV-LAREDVMAERIRPLD-----KQ---RWAAAVDPVGGR----TLATVLS  234 (328)
T ss_dssp             TTCCEEEEESCTTCHHHHHH----TTCS-EE-EECC---------CC-----SC---CEEEEEECSTTT----THHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHH----cCCc-EE-EecCCcHHHHHHHhc-----CC---cccEEEECCcHH----HHHHHHH
Confidence            46789999999998888864    4643 21 111121 12222221     24   799987654432    4667789


Q ss_pred             cccCCeEEEEeC
Q 044253           89 LFKVGGIVIYDN  100 (139)
Q Consensus        89 lL~~gG~ii~~~  100 (139)
                      .|+++|.++.-.
T Consensus       235 ~l~~~G~~v~~G  246 (328)
T 1xa0_A          235 RMRYGGAVAVSG  246 (328)
T ss_dssp             TEEEEEEEEECS
T ss_pred             hhccCCEEEEEe
Confidence            999999998644

>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}

Probab=85.25  E-value=6.3  Score=27.40  Aligned_cols=66  Identities=9%  Similarity=0.080  Sum_probs=47.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      .+|..||-++...+..+..++..|+.  +. ...+..+.+..+.     ..   .+|+|++|...+  +..++++.+..
T Consensus         5 ~~ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~-----~~---~~dlvllD~~l~~~~g~~~~~~l~~   72 (230)
T 2oqr_A            5 TSVLIVEDEESLADPLAFLLRKEGFE--AT-VVTDGPAALAEFD-----RA---GADIVLLDLMLPGMSGTDVCKQLRA   72 (230)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EECSHHHHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cc---CCCEEEEECCCCCCCHHHHHHHHHc
Confidence            57999999999999999999887762  43 5667777766553     34   799999997433  23445555554

>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0

Probab=84.99  E-value=4.8  Score=25.51  Aligned_cols=66  Identities=18%  Similarity=0.062  Sum_probs=43.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      ..+|..+|-++......++.++.. +  .+. ...+..+.+..+.     ..   ++|+|++|.....  ...+++.+..
T Consensus         3 ~~~iLivdd~~~~~~~l~~~l~~~-~--~v~-~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~   70 (140)
T 3n53_A            3 LKKILIIDQQDFSRIELKNFLDSE-Y--LVI-ESKNEKEALEQID-----HH---HPDLVILDMDIIGENSPNLCLKLKR   70 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTT-S--EEE-EESSHHHHHHHHH-----HH---CCSEEEEETTC------CHHHHHHT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhc-c--eEE-EeCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCcHHHHHHHHHc
Confidence            457899999999999999888765 2  233 5567777776553     35   7999999975432  2234444443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=84.95  E-value=1.6  Score=33.96  Aligned_cols=77  Identities=9%  Similarity=-0.075  Sum_probs=49.4

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      ++...+..+.+|+.+|++++.++.+.+    .|.    . ...+..+.+...       .   ..|+||+-.+.......
T Consensus        37 ~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~a-------~---~~DvVi~~vp~~~v~~v   97 (358)
T 4e21_A           37 MVRRLRKGGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAKL-------V---KPRVVWLMVPAAVVDSM   97 (358)
T ss_dssp             HHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHHS-------C---SSCEEEECSCGGGHHHH
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhcC-------C---CCCEEEEeCCHHHHHHH
Confidence            345556667889999999987766543    233    1 133455544322       3   46999887654456667


Q ss_pred             HHHHhhcccCCeEEEE
Q 044253           83 RETLMTLFKVGGIVIY   98 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~   98 (139)
                      ++.+.+.|++|.+++-
T Consensus        98 l~~l~~~l~~g~iiId  113 (358)
T 4e21_A           98 LQRMTPLLAANDIVID  113 (358)
T ss_dssp             HHHHGGGCCTTCEEEE
T ss_pred             HHHHHhhCCCCCEEEe
Confidence            7778888888776653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=84.75  E-value=9  Score=27.52  Aligned_cols=62  Identities=0%  Similarity=-0.209  Sum_probs=42.2

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcCC
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      .+..+++|+.++.+....+.+++..+..+- .++.++.+|+.+      .+.++...   ..   +.|.++..+.
T Consensus        29 l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~---~g---~id~li~~Ag   96 (266)
T 3oig_A           29 LHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ---VG---VIHGIAHCIA   96 (266)
T ss_dssp             HHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH---HS---CCCEEEECCC
T ss_pred             HHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH---hC---CeeEEEEccc
Confidence            445678999999998888877777766653 368899888653      22222221   24   7899998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=84.74  E-value=0.92  Score=34.54  Aligned_cols=73  Identities=18%  Similarity=0.164  Sum_probs=46.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      +++|++++.+++..+.+++    .|..   .++..+- .+...++..    ..   .+|+||--...   ...++.+.+.
T Consensus       196 Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~----g~---g~D~vid~~g~---~~~~~~~~~~  258 (344)
T 2h6e_A          196 NITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTD----GL---GASIAIDLVGT---EETTYNLGKL  258 (344)
T ss_dssp             TCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHT----TC---CEEEEEESSCC---HHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhc----CC---CccEEEECCCC---hHHHHHHHHH
Confidence            6789999999999888875    3542   2231111 222333321    24   69999865543   3356778899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.++.-.
T Consensus       259 l~~~G~iv~~g  269 (344)
T 2h6e_A          259 LAQEGAIILVG  269 (344)
T ss_dssp             EEEEEEEEECC
T ss_pred             hhcCCEEEEeC
Confidence            99999998643

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=84.72  E-value=0.6  Score=35.15  Aligned_cols=73  Identities=11%  Similarity=0.039  Sum_probs=45.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++..+.+++    .|.. . .+-..+... +..+.     ..   .+|+||--...    ..++.+.+.
T Consensus       170 ~Ga~Vi~~~~~~~~~~~~~~----lGa~-~-vi~~~~~~~-~~~~~-----~~---~~d~v~d~~g~----~~~~~~~~~  230 (324)
T 3nx4_A          170 LGYQVAAVSGRESTHGYLKS----LGAN-R-ILSRDEFAE-SRPLE-----KQ---LWAGAIDTVGD----KVLAKVLAQ  230 (324)
T ss_dssp             TTCCEEEEESCGGGHHHHHH----HTCS-E-EEEGGGSSC-CCSSC-----CC---CEEEEEESSCH----HHHHHHHHT
T ss_pred             cCCEEEEEeCCHHHHHHHHh----cCCC-E-EEecCCHHH-HHhhc-----CC---CccEEEECCCc----HHHHHHHHH
Confidence            46799999999999998875    4543 1 111111111 12221     24   79987643332    267888899


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |+++|.++.-..
T Consensus       231 l~~~G~iv~~G~  242 (324)
T 3nx4_A          231 MNYGGCVAACGL  242 (324)
T ss_dssp             EEEEEEEEECCC
T ss_pred             HhcCCEEEEEec
Confidence            999999987543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=84.72  E-value=1.2  Score=35.27  Aligned_cols=64  Identities=5%  Similarity=0.060  Sum_probs=39.9

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      ..++.+|++||+.+-. .    .+..   .++++++++|++.....       ..   +||+|++|-.. ........+.
T Consensus       230 ~~rg~~V~aVD~~~l~-~----~l~~---~~~V~~~~~d~~~~~~~-------~~---~~D~vvsDm~~-~p~~~~~l~~  290 (375)
T 4auk_A          230 VKRNMWVYSVDNGPMA-Q----SLMD---TGQVTWLREDGFKFRPT-------RS---NISWMVCDMVE-KPAKVAALMA  290 (375)
T ss_dssp             HHTTCEEEEECSSCCC-H----HHHT---TTCEEEECSCTTTCCCC-------SS---CEEEEEECCSS-CHHHHHHHHH
T ss_pred             HHCCCEEEEEEhhhcC-h----hhcc---CCCeEEEeCccccccCC-------CC---CcCEEEEcCCC-ChHHhHHHHH
Confidence            3456799999986522 1    1222   25799999999876321       35   89999999754 3344444333


Q ss_pred             hcc
Q 044253           88 TLF   90 (139)
Q Consensus        88 ~lL   90 (139)
                      +.|
T Consensus       291 ~wl  293 (375)
T 4auk_A          291 QWL  293 (375)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A

Probab=84.68  E-value=6.2  Score=28.43  Aligned_cols=78  Identities=10%  Similarity=0.028  Sum_probs=51.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......+..++..|+  .+ ....+..+.+..+.     ..   .||+|++|....  +-..+++.+..
T Consensus       129 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~a~~~~eal~~l~-----~~---~~dlvl~D~~mp~~~G~~l~~~ir~  197 (254)
T 2ayx_A          129 DMMILVVDDHPINRRLLADQLGSLGY--QC-KTANDGVDALNVLS-----KN---HIDIVLSDVNMPNMDGYRLTQRIRQ  197 (254)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHHTS--EE-EEECCSHHHHHHHH-----HS---CCSEEEEEESSCSSCCHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC--EE-EEECCHHHHHHHHH-----hC---CCCEEEEcCCCCCCCHHHHHHHHHh
Confidence            35799999999999999999998887  24 35667777776553     35   799999996432  22344555543


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .-..--++++.
T Consensus       198 ~~~~~piI~lt  208 (254)
T 2ayx_A          198 LGLTLPVIGVT  208 (254)
T ss_dssp             HHCCSCEEEEE
T ss_pred             cCCCCcEEEEE
Confidence            32222345543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=84.48  E-value=0.83  Score=35.44  Aligned_cols=66  Identities=15%  Similarity=0.151  Sum_probs=43.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--------Ccc-----
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--------KDN-----   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--------~~~-----   78 (139)
                      +.|+++|+.+-..           ..+  .+++||.... . .      ..   +||+|+.|-.        ...     
T Consensus       139 ~~VVavDL~~~~s-----------da~--~~IqGD~~~~-~-~------~~---k~DLVISDMAPNtTG~~D~d~~Rs~~  194 (344)
T 3r24_A          139 TLLVDSDLNDFVS-----------DAD--STLIGDCATV-H-T------AN---KWDLIISDMYDPRTKHVTKENDSKEG  194 (344)
T ss_dssp             CEEEEEESSCCBC-----------SSS--EEEESCGGGE-E-E------SS---CEEEEEECCCCTTSCSSCSCCCCCCT
T ss_pred             cEEEEeeCccccc-----------CCC--eEEEcccccc-c-c------CC---CCCEEEecCCCCcCCccccchhHHHH
Confidence            4788888887542           112  4599997542 1 1      35   8999999941        111     


Q ss_pred             -hHHHHHHHhhcccCCeEEEEeCC
Q 044253           79 -YRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        79 -~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                       .+..++-+.+.|++||.+++.-.
T Consensus       195 L~ElALdfA~~~LkpGGsFvVKVF  218 (344)
T 3r24_A          195 FFTYLCGFIKQKLALGGSIAVKIT  218 (344)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhCcCCCEEEEEEe
Confidence             13345556689999999998633

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=84.46  E-value=5.5  Score=24.83  Aligned_cols=67  Identities=15%  Similarity=0.043  Sum_probs=45.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..+|-++......+..++ .|+  .+ ....+..+.+..+.     ..   .+|+|++|....  +...+++.+..
T Consensus         4 ~~~ilivdd~~~~~~~l~~~l~-~~~--~v-~~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~~   71 (133)
T 3nhm_A            4 KPKVLIVENSWTMRETLRLLLS-GEF--DC-TTAADGASGLQQAL-----AH---PPDVLISDVNMDGMDGYALCGHFRS   71 (133)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHT-TTS--EE-EEESSHHHHHHHHH-----HS---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHh-CCc--EE-EEECCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            4579999999999999988887 554  23 35667777776553     35   799999997433  33455665554


Q ss_pred             c
Q 044253           89 L   89 (139)
Q Consensus        89 l   89 (139)
                      .
T Consensus        72 ~   72 (133)
T 3nhm_A           72 E   72 (133)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A

Probab=84.37  E-value=5.6  Score=24.87  Aligned_cols=69  Identities=9%  Similarity=0.025  Sum_probs=47.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      ..+|..||-++......++.++..|+.  ......+..+.+..+..    ..   .+|+|++|...+.  -..+++.+..
T Consensus         5 ~~~iLivdd~~~~~~~l~~~L~~~g~~--~v~~~~~~~~a~~~~~~----~~---~~dlvi~D~~~p~~~g~~~~~~lr~   75 (129)
T 3h1g_A            5 SMKLLVVDDSSTMRRIIKNTLSRLGYE--DVLEAEHGVEAWEKLDA----NA---DTKVLITDWNMPEMNGLDLVKKVRS   75 (129)
T ss_dssp             -CCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHHH----CT---TCCEEEECSCCSSSCHHHHHHHHHT
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEeCCHHHHHHHHHh----CC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            457999999999999999999988873  23455667776655432    34   6999999975432  3445555544

>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}

Probab=84.10  E-value=6.1  Score=25.03  Aligned_cols=66  Identities=15%  Similarity=0.091  Sum_probs=47.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      .+|..+|-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|.....  -.++++.+..
T Consensus         4 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~   71 (138)
T 3c3m_A            4 YTILVVDDSPMIVDVFVTMLERGGY--RPI-TAFSGEECLEALN-----AT---PPDLVLLDIMMEPMDGWETLERIKT   71 (138)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHcCc--eEE-EeCCHHHHHHHHh-----cc---CCCEEEEeCCCCCCCHHHHHHHHHc
Confidence            5789999999999999999988776  233 5667777766553     35   7999999975432  3345555543

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=84.06  E-value=0.48  Score=36.67  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=37.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      .|+++|+++.+++..+.|+..      ..++++|+.+.... +.     ..   .+|+|+.+++.
T Consensus        28 ~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~-----~~---~~D~l~~gpPC   78 (343)
T 1g55_A           28 VVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFD-----RL---SFDMILMSPPC   78 (343)
T ss_dssp             EEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHH-----HH---CCSEEEECCC-
T ss_pred             EEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcC-----cC---CcCEEEEcCCC
Confidence            589999999999999999742      34778898875422 21     23   69999999874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=83.93  E-value=3.8  Score=30.40  Aligned_cols=68  Identities=13%  Similarity=0.102  Sum_probs=45.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .+++|++++.+++..+.+++    .|..   .++..+- .+....+       .   .+|+||- ...    ..++.+.+
T Consensus       149 ~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~-------~---~~d~vid-~g~----~~~~~~~~  206 (302)
T 1iz0_A          149 MGLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW-------G---GLDLVLE-VRG----KEVEESLG  206 (302)
T ss_dssp             TTCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT-------T---SEEEEEE-CSC----TTHHHHHT
T ss_pred             CCCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh-------c---CceEEEE-CCH----HHHHHHHH
Confidence            46799999999999888764    4542   2232211 2332222       3   7999988 653    24677889


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .|+++|.++.-
T Consensus       207 ~l~~~G~~v~~  217 (302)
T 1iz0_A          207 LLAHGGRLVYI  217 (302)
T ss_dssp             TEEEEEEEEEC
T ss_pred             hhccCCEEEEE
Confidence            99999999863

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=83.41  E-value=1.7  Score=33.19  Aligned_cols=73  Identities=4%  Similarity=-0.009  Sum_probs=47.0

Q ss_pred             hhcc-eeEEeCCcc---HHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253           10 FIYF-IVAIDVSRE---SSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus        10 ~~~~-v~~vD~s~~---~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      .+++ |++++.+++   ..+.+++    .|. +.+.....|..+ +.++      ..   .+|+||--...   ...++.
T Consensus       197 ~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa-~~v~~~~~~~~~-i~~~------~g---g~Dvvid~~g~---~~~~~~  258 (357)
T 2b5w_A          197 KGYENLYCLGRRDRPDPTIDIIEE----LDA-TYVDSRQTPVED-VPDV------YE---QMDFIYEATGF---PKHAIQ  258 (357)
T ss_dssp             TCCCEEEEEECCCSSCHHHHHHHH----TTC-EEEETTTSCGGG-HHHH------SC---CEEEEEECSCC---HHHHHH
T ss_pred             cCCcEEEEEeCCcccHHHHHHHHH----cCC-cccCCCccCHHH-HHHh------CC---CCCEEEECCCC---hHHHHH
Confidence            4566 999999998   8888764    564 223111224444 4333      14   69999755432   335677


Q ss_pred             HhhcccCCeEEEEeC
Q 044253           86 LMTLFKVGGIVIYDN  100 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~  100 (139)
                      +.+.|+++|.++.-.
T Consensus       259 ~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          259 SVQALAPNGVGALLG  273 (357)
T ss_dssp             HHHHEEEEEEEEECC
T ss_pred             HHHHHhcCCEEEEEe
Confidence            889999999998644

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=83.38  E-value=1.3  Score=33.61  Aligned_cols=74  Identities=12%  Similarity=0.117  Sum_probs=46.6

Q ss_pred             chhhhhhhc--ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH-HHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253            4 NLESTFFIY--FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP-ALDQLLKDEKIHFFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus         4 ~~~~~~~~~--~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~-~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~   80 (139)
                      +...+..+.  +|+++|++++.++.+++    .|..+.   ...+..+ .   .       .   ..|+||+-.+.....
T Consensus        49 A~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~~---~~~~~~~~~---~-------~---~aDvVilavp~~~~~  108 (314)
T 3ggo_A           49 AKSLRRSGFKGKIYGYDINPESISKAVD----LGIIDE---GTTSIAKVE---D-------F---SPDFVMLSSPVRTFR  108 (314)
T ss_dssp             HHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCSE---EESCTTGGG---G-------G---CCSEEEECSCGGGHH
T ss_pred             HHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcch---hcCCHHHHh---h-------c---cCCEEEEeCCHHHHH
Confidence            334444556  89999999988777653    454221   1233322 1   1       3   588998877655666


Q ss_pred             HHHHHHhhcccCCeEEE
Q 044253           81 NYRETLMTLFKVGGIVI   97 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii   97 (139)
                      .+++.+.+.++++.+++
T Consensus       109 ~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A          109 EIAKKLSYILSEDATVT  125 (314)
T ss_dssp             HHHHHHHHHSCTTCEEE
T ss_pred             HHHHHHhhccCCCcEEE
Confidence            77777777887777654

>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0

Probab=82.97  E-value=6.4  Score=24.46  Aligned_cols=74  Identities=11%  Similarity=-0.007  Sum_probs=46.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--HHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--RNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--~~~~~~~~~   88 (139)
                      ..+|..+|-++...+..+..++..+.  .+ ....+..+.+..+      ..   .+|+|++|......  ..+++.+..
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~~------~~---~~dlvi~D~~l~~~~g~~~~~~l~~   70 (135)
T 3eqz_A            3 LNRVFIVDDDTLTCNLLKTIVEPIFG--NV-EAFQHPRAFLTLS------LN---KQDIIILDLMMPDMDGIEVIRHLAE   70 (135)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTTCS--CE-EEESCHHHHTTSC------CC---TTEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             cceEEEEeCCHHHHHHHHHHHHhhcc--ee-eeecCHHHHHHhh------cc---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            45789999999999999999877642  23 3445565554333      34   59999999754432  334555544


Q ss_pred             cccCCeEEE
Q 044253           89 LFKVGGIVI   97 (139)
Q Consensus        89 lL~~gG~ii   97 (139)
                      . .+...++
T Consensus        71 ~-~~~~~ii   78 (135)
T 3eqz_A           71 H-KSPASLI   78 (135)
T ss_dssp             T-TCCCEEE
T ss_pred             C-CCCCCEE
Confidence            3 2443333

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=82.71  E-value=7.1  Score=24.77  Aligned_cols=79  Identities=11%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~   86 (139)
                      ...+|..||-++......++.++..|+.  +. ...+..+.+..+..    ..   .+|+|++|...   .....+++.+
T Consensus         4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~a~~~l~~----~~---~~dlvi~D~~l~~~~~g~~~~~~l   73 (140)
T 3h5i_A            4 KDKKILIVEDSKFQAKTIANILNKYGYT--VE-IALTGEAAVEKVSG----GW---YPDLILMDIELGEGMDGVQTALAI   73 (140)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHHT----TC---CCSEEEEESSCSSSCCHHHHHHHH
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHcCCE--EE-EecChHHHHHHHhc----CC---CCCEEEEeccCCCCCCHHHHHHHH
Confidence            3468999999999999999999988862  43 56677777765531    25   79999999753   2334555655


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      ... ..-.++++.
T Consensus        74 ~~~-~~~~ii~ls   85 (140)
T 3h5i_A           74 QQI-SELPVVFLT   85 (140)
T ss_dssp             HHH-CCCCEEEEE
T ss_pred             HhC-CCCCEEEEE
Confidence            543 233344443

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=82.24  E-value=8.1  Score=29.87  Aligned_cols=65  Identities=9%  Similarity=0.062  Sum_probs=46.3

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      +|..||-++......+..++..|+.  + ....+..+.+..+.     ..   .+|+|++|...+  +-.++++.+..
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~l~-----~~---~~DlvllDi~mP~~dG~ell~~lr~   68 (368)
T 3dzd_A            2 RVLVVDDEESITSSLSAILEEEGYH--P-DTAKTLREAEKKIK-----EL---FFPVIVLDVWMPDGDGVNFIDFIKE   68 (368)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HB---CCSEEEEESEETTEETTTHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            5788999999999999999988863  3 45677887776653     35   799999996322  22334555443

>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A

Probab=81.84  E-value=6.9  Score=24.06  Aligned_cols=66  Identities=11%  Similarity=-0.049  Sum_probs=45.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      .+|..+|-++......+..++..|+  .+. ...+..+.+..+.     ..   .+|+|++|....  ...++++.+..
T Consensus         3 ~~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~   70 (127)
T 2jba_A            3 RRILVVEDEAPIREMVCFVLEQNGF--QPV-EAEDYDSAVNQLN-----EP---WPDLILLAWMLPGGSGIQFIKHLRR   70 (127)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EECSHHHHHTTCS-----SS---CCSEEEEESEETTEEHHHHHHHHHT
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHCCc--eEE-EeCCHHHHHHHHh-----cc---CCCEEEEecCCCCCCHHHHHHHHHh
Confidence            4688999999999999999988776  243 4567777765442     34   799999996432  23345555544

>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}

Probab=81.80  E-value=7.1  Score=24.18  Aligned_cols=78  Identities=12%  Similarity=-0.084  Sum_probs=51.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~~~   87 (139)
                      ..+|..+|-++......+..++..|+  .+. ...+..+.+..+..    ..   .+|+|++|....   ....+++.+.
T Consensus         5 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~~----~~---~~dlvi~d~~l~~~~~g~~~~~~l~   74 (132)
T 2rdm_A            5 AVTILLADDEAILLLDFESTLTDAGF--LVT-AVSSGAKAIEMLKS----GA---AIDGVVTDIRFCQPPDGWQVARVAR   74 (132)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHHT----TC---CCCEEEEESCCSSSSCHHHHHHHHH
T ss_pred             CceEEEEcCcHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHHc----CC---CCCEEEEeeeCCCCCCHHHHHHHHH
Confidence            45799999999999999999998776  344 46777777665531    23   699999997533   2344556555


Q ss_pred             hcccCCeEEEE
Q 044253           88 TLFKVGGIVIY   98 (139)
Q Consensus        88 ~lL~~gG~ii~   98 (139)
                      ..-..-.++++
T Consensus        75 ~~~~~~~ii~~   85 (132)
T 2rdm_A           75 EIDPNMPIVYI   85 (132)
T ss_dssp             HHCTTCCEEEE
T ss_pred             hcCCCCCEEEE
Confidence            44323344444

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=81.66  E-value=1.8  Score=33.01  Aligned_cols=39  Identities=18%  Similarity=0.438  Sum_probs=26.5

Q ss_pred             ceeEEEEcCCC----cchHHH----------HHHHhhcccCCeEEEEeCCCCC
Q 044253           66 NFDYAFVDAHK----DNYRNY----------RETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        66 ~fD~If~D~~~----~~~~~~----------~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                      +||+||++...    .+|.+.          -..++..|+|||.+++...-+.
T Consensus       211 rYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyA  263 (324)
T 3trk_A          211 RYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYA  263 (324)
T ss_dssp             CEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCC
T ss_pred             ceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeeccc
Confidence            89999999742    234332          2234579999999998655443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=81.51  E-value=3.8  Score=32.91  Aligned_cols=83  Identities=7%  Similarity=-0.001  Sum_probs=51.1

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------------CCcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------------DLKINLMESRALPALDQLLKDEKIHFFFENF   67 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~f   67 (139)
                      |.|...+..+.+|+++|++++.++..++.  ....              ..++++ ..|..+.+          .   ..
T Consensus        22 ~~A~~La~~G~~V~~~D~~~~kv~~l~~g--~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~----------~---~a   85 (446)
T 4a7p_A           22 VSGACFSDFGHEVVCVDKDARKIELLHQN--VMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV----------K---DA   85 (446)
T ss_dssp             HHHHHHHHTTCEEEEECSCSTTHHHHTTT--CCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH----------T---TC
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHHhcC--CCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH----------h---cC
Confidence            44556666788999999999998877542  1100              123333 23443332          2   57


Q ss_pred             eEEEEcCCCc-----------chHHHHHHHhhcccCCeEEEEeC
Q 044253           68 DYAFVDAHKD-----------NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        68 D~If~D~~~~-----------~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      |+||+-.+.+           ......+.+.+.|++|.+++...
T Consensus        86 Dvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S  129 (446)
T 4a7p_A           86 DAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS  129 (446)
T ss_dssp             SEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred             CEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            8898863221           24556677778898888877643

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=80.77  E-value=4.2  Score=33.05  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-chH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-NYR   80 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~~~   80 (139)
                      +|...+..+.+|++.|++++.++.+.+.    +.. .++. ...+..+.+..+       .   ..|+|++-.+.. ...
T Consensus        19 lA~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~g~~i~-~~~s~~e~v~~l-------~---~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A           19 LILNMNDHGFVVCAFNRTVSKVDDFLAN----EAKGTKVV-GAQSLKEMVSKL-------K---KPRRIILLVKAGQAVD   83 (484)
T ss_dssp             HHHHHHHTTCCEEEECSSTHHHHHHHHT----TTTTSSCE-ECSSHHHHHHTB-------C---SSCEEEECSCSSHHHH
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHHHhc----ccCCCcee-ccCCHHHHHhhc-------c---CCCEEEEecCChHHHH
Confidence            3455566678999999999887765442    211 1222 134555554433       2   478888876543 455


Q ss_pred             HHHHHHhhcccCCeEEEE
Q 044253           81 NYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~   98 (139)
                      ..++.+.+.|++|.+++-
T Consensus        84 ~vl~~l~~~L~~g~iIId  101 (484)
T 4gwg_A           84 DFIEKLVPLLDTGDIIID  101 (484)
T ss_dssp             HHHHHHGGGCCTTCEEEE
T ss_pred             HHHHHHHHhcCCCCEEEE
Confidence            667778888888776653

>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A

Probab=80.62  E-value=10  Score=26.67  Aligned_cols=75  Identities=16%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..||-++...+..+..++..|+.  +. ...+..+.+..+.     ..   .+|+|++|....  ....+++.+...
T Consensus         6 ~~ILivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~-----~~---~~dlvilD~~l~~~~g~~~~~~lr~~   74 (238)
T 2gwr_A            6 QRILVVDDDASLAEMLTIVLRGEGFD--TA-VIGDGTQALTAVR-----EL---RPDLVLLDLMLPGMNGIDVCRVLRAD   74 (238)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EECCGGGHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHTT
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence            47999999999999999999887762  43 5566776665543     34   799999997433  234455555443


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                      - .-.++++
T Consensus        75 ~-~~~ii~l   82 (238)
T 2gwr_A           75 S-GVPIVML   82 (238)
T ss_dssp             C-CCCEEEE
T ss_pred             C-CCcEEEE
Confidence            2 3334444

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=80.59  E-value=3.6  Score=33.24  Aligned_cols=80  Identities=15%  Similarity=0.080  Sum_probs=50.9

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRN   81 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~   81 (139)
                      +|...+..+.+|+..|++++.++...+...  +  ..++ ...+..+.+..+       +   ..|+|++-.+. .....
T Consensus        30 lA~~La~~G~~V~v~~r~~~~~~~l~~~~~--~--~gi~-~~~s~~e~v~~l-------~---~aDvVil~Vp~~~~v~~   94 (480)
T 2zyd_A           30 LALNIESRGYTVSIFNRSREKTEEVIAENP--G--KKLV-PYYTVKEFVESL-------E---TPRRILLMVKAGAGTDA   94 (480)
T ss_dssp             HHHHHHTTTCCEEEECSSHHHHHHHHHHST--T--SCEE-ECSSHHHHHHTB-------C---SSCEEEECSCSSSHHHH
T ss_pred             HHHHHHhCCCeEEEEeCCHHHHHHHHhhCC--C--CCeE-EeCCHHHHHhCC-------C---CCCEEEEECCCHHHHHH
Confidence            445556667789999999988776654321  1  1233 234555544322       2   48999987654 34667


Q ss_pred             HHHHHhhcccCCeEEE
Q 044253           82 YRETLMTLFKVGGIVI   97 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii   97 (139)
                      .++.+.+.|++|.+++
T Consensus        95 vl~~l~~~l~~g~iII  110 (480)
T 2zyd_A           95 AIDSLKPYLDKGDIII  110 (480)
T ss_dssp             HHHHHGGGCCTTCEEE
T ss_pred             HHHHHHhhcCCCCEEE
Confidence            7788888888877665

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=80.22  E-value=6.8  Score=30.05  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=46.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|+++- +++.++.+++    .|...-+.....|..+.+.++.     .+   .+|+||--...   ...++.+.+.
T Consensus       188 ~Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t-----~g---~~d~v~d~~g~---~~~~~~~~~~  251 (371)
T 3gqv_A          188 SGYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT-----KN---NLRYALDCITN---VESTTFCFAA  251 (371)
T ss_dssp             TTCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT-----TT---CCCEEEESSCS---HHHHHHHHHH
T ss_pred             CCCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc-----cC---CccEEEECCCc---hHHHHHHHHH
Confidence            467888874 8888777754    5653223333345545444432     34   69998755432   3456677788


Q ss_pred             c-cCCeEEEEeC
Q 044253           90 F-KVGGIVIYDN  100 (139)
Q Consensus        90 L-~~gG~ii~~~  100 (139)
                      | +++|.++.-.
T Consensus       252 l~~~~G~iv~~g  263 (371)
T 3gqv_A          252 IGRAGGHYVSLN  263 (371)
T ss_dssp             SCTTCEEEEESS
T ss_pred             hhcCCCEEEEEe
Confidence            8 6999998644

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=80.22  E-value=14  Score=26.64  Aligned_cols=62  Identities=13%  Similarity=0.038  Sum_probs=43.9

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcC
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ..+..+++|+.++++++.++.+.+.++..+- .++.++.+|+.+      .+.+....   ..   +.|.++.++
T Consensus        27 ~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~---~G---~iD~lvnnA   94 (256)
T 4fs3_A           27 VLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGKD---VG---NIDGVYHSI   94 (256)
T ss_dssp             HHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHHH---HC---CCSEEEECC
T ss_pred             HHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHHH---hC---CCCEEEecc
Confidence            3455688999999999999998888877654 368888888653      22222222   24   799998765

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=80.12  E-value=5.7  Score=30.89  Aligned_cols=78  Identities=10%  Similarity=0.005  Sum_probs=52.6

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYR   83 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~   83 (139)
                      .+.....++.+.=|--....++.|++.+|+.+ .+++...  .   ...      ..   .||+|++-.++.  .....+
T Consensus        54 ~~~~~~~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~---~~~------~~---~~~~v~~~lpk~~~~l~~~L  119 (375)
T 4dcm_A           54 CALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDS--T---ADY------PQ---QPGVVLIKVPKTLALLEQQL  119 (375)
T ss_dssp             HHTGGGCCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--T---SCC------CS---SCSEEEEECCSCHHHHHHHH
T ss_pred             HhhccCCceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--c---ccc------cc---CCCEEEEEcCCCHHHHHHHH
Confidence            33334577888555556667789999999954 4777633  1   122      35   799999887643  234456


Q ss_pred             HHHhhcccCCeEEEE
Q 044253           84 ETLMTLFKVGGIVIY   98 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~   98 (139)
                      ..+...|++|+.+++
T Consensus       120 ~~l~~~l~~~~~i~~  134 (375)
T 4dcm_A          120 RALRKVVTSDTRIIA  134 (375)
T ss_dssp             HHHHTTCCTTSEEEE
T ss_pred             HHHHhhCCCCCEEEE
Confidence            777889999999875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=80.07  E-value=4.6  Score=30.40  Aligned_cols=81  Identities=10%  Similarity=-0.003  Sum_probs=49.5

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHH----cCCCC--cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKK----VEVDL--KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY   79 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~----~g~~~--~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~   79 (139)
                      ..+..+.+|+.+|++++.++..++....    .+...  ++.....|..+.+          .   .+|+|++-.+....
T Consensus        22 ~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~D~vi~~v~~~~~   88 (359)
T 1bg6_A           22 YLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----------K---DADVILIVVPAIHH   88 (359)
T ss_dssp             HHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----------T---TCSEEEECSCGGGH
T ss_pred             HHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----------h---cCCEEEEeCCchHH
Confidence            3444567899999999887766553210    00100  0101223433321          3   68999998766566


Q ss_pred             HHHHHHHhhcccCCeEEEEe
Q 044253           80 RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ...++.+.+.++++..++..
T Consensus        89 ~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           89 ASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             HHHHHHHGGGCCTTCEEEES
T ss_pred             HHHHHHHHHhCCCCCEEEEc
Confidence            77788888889988877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	6e-12
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	6e-08
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	7e-06

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 58.6 bits (141), Expect = 6e-12
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 3/103 (2%)

Query: 14  IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73
           I+A+D+++E+ E GLP+IKK  VD KI+  E  ALP LD+++KDEK H    ++D+ FVD
Sbjct: 87  ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH---GSYDFIFVD 143

Query: 74  AHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
           A KDNY NY + L+ L KVGG++ YDNTLW G+V    +    
Sbjct: 144 ADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLR 186

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 6e-08
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 13  FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV 72
            +V  +V  +  E G P+ ++ E + KI+L    AL  LD+LL           FD A V
Sbjct: 86  RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLA----AGEAGTFDVAVV 141

Query: 73  DAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPE 116
           DA K+N   Y E  + L + GGI+     LW G V    +    
Sbjct: 142 DADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVA 185

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 7e-06
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 52  DQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT--LFKVGGIVIYDNTLWGGTVAM 109
             L+   K  +  +  D  F+D  KD Y      L    L + G +++ DN +  GT   
Sbjct: 118 QDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDF 177

Query: 110 AE 111
             
Sbjct: 178 LA 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.9
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.89
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.61
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.48
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.47
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.47
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.46
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.45
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.43
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.38
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.32
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.28
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.26
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.2
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.2
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.1
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.09
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.99
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.98
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.94
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.93
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.9
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.9
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.84
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.84
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.83
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.82
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.81
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.8
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.79
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.78
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.78
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.76
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.75
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.75
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.74
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.74
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.73
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.73
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.71
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.71
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.71
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.7
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.69
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.68
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.67
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.66
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.66
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.63
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.63
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.6
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.56
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.54
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.53
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.5
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.48
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.44
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.43
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.42
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.41
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.39
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.39
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.36
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.33
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.32
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.3
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.29
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.22
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.17
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.16
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.06
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.04
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.02
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.02
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.96
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.93
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.92
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.86
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.83
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.82
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.78
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.54
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.5
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.48
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.47
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.45
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.3
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.16
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.06
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.04
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.6
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.34
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.96
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	95.9
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.51
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.51
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.42
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.27
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	95.27
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.04
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.03
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	94.92
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.91
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	94.86
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	94.77
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	94.73
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.64
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.63
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.5
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.45
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	94.44
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	94.34
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	94.33
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	94.21
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	94.2
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	94.05
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	94.04
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.02
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.83
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	93.69
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	93.68
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.66
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	93.6
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.55
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	93.48
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	93.39
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	93.25
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	93.2
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	93.19
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	93.08
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	92.89
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	92.88
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	92.8
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	92.78
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	92.75
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	92.59
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	92.57
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	92.55
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	92.34
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.09
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.87
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	91.86
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.41
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.33
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.33
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.28
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.12
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.94
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	90.94
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	90.87
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.78
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.31
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.02
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.59
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	89.47
d1s8na_	190	Probable two-component system transcriptional regu	89.23
d1k68a_	140	Response regulator for cyanobacterial phytochrome	87.38
d1qo0d_	189	Positive regulator of the amidase operon AmiR {Pse	87.13
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.07
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	87.02
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	86.9
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	86.42
d1k66a_	149	Response regulator for cyanobacterial phytochrome	86.39
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.45
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	84.78
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	84.4
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	83.53
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.1
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	82.93
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	82.69
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.28
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.23
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	81.92
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	80.97
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	80.72

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.90  E-value=2e-23  Score=154.86  Aligned_cols=126  Identities=45%  Similarity=0.721  Sum_probs=109.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      .++|+++|.+++..+.|++++++.|+.++++++.|++.+.++++........   +||+||+|+++..|..+++.+.++|
T Consensus        84 ~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~---~fD~iFiDa~k~~y~~~~e~~~~ll  160 (227)
T d1susa1          84 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG---SYDFIFVDADKDNYLNYHKRLIDLV  160 (227)
T ss_dssp             TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT---CBSEEEECSCSTTHHHHHHHHHHHB
T ss_pred             CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC---ceeEEEeccchhhhHHHHHHHHhhc
Confidence            4689999999999999999999999999999999999999988754311124   7999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCccccccccc-CchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQ-VPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      +|||+|++||++|+|.++.+... .....+.....|++||+++.+||+|+
T Consensus       161 ~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~  210 (227)
T d1susa1         161 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIE  210 (227)
T ss_dssp             CTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBC
T ss_pred             CCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999988644 22223456778999999999999985

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.4e-23  Score=151.36  Aligned_cols=120  Identities=29%  Similarity=0.401  Sum_probs=107.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      .++|+++|++++..+.|+++++..|+.++++++.||+.+.++++..... ..   +||+||+|+++..|..+++.+.++|
T Consensus        84 ~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~-~~---~fD~ifiD~dk~~y~~~~~~~~~lL  159 (219)
T d2avda1          84 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE-AG---TFDVAVVDADKENCSAYYERCLQLL  159 (219)
T ss_dssp             TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC-TT---CEEEEEECSCSTTHHHHHHHHHHHE
T ss_pred             CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcc-cC---CccEEEEeCCHHHHHHHHHHHHHHh
Confidence            3589999999999999999999999999999999999999877643211 24   7999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253           91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR  139 (139)
Q Consensus        91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (139)
                      ++||+|++||++|+|.++.+...     +..+++|++||+.+++||+|+
T Consensus       160 ~~GGvii~Dn~l~~G~v~~~~~~-----d~~~~~ir~~~~~i~~d~r~~  203 (219)
T d2avda1         160 RPGGILAVLRVLWRGKVLQPPKG-----DVAAECVRNLNERIRRDVRVY  203 (219)
T ss_dssp             EEEEEEEEECCSGGGGGGSCCTT-----CHHHHHHHHHHHHHHHCTTEE
T ss_pred             cCCcEEEEeCCcccCcccCcccC-----CHHHHHHHHHHHHHHhCCCEE
Confidence            99999999999999999988643     788999999999999999974

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.7e-15  Score=110.67  Aligned_cols=92  Identities=17%  Similarity=0.247  Sum_probs=78.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH--HHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY--RETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~--~~~~~~   88 (139)
                      +++|+++|+++++++.|+++++..|+.++++++.||+.+.++++....+ ..   +||+||+|+.+..|...  +....+
T Consensus        81 ~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~-~~---~~D~ifiD~~~~~~~~~~~l~~~~~  156 (214)
T d2cl5a1          81 GARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD-VD---TLDMVFLDHWKDRYLPDTLLLEKCG  156 (214)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSC-CC---CEEEEEECSCGGGHHHHHHHHHHTT
T ss_pred             ccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccc-cc---ccceeeecccccccccHHHHHHHhC
Confidence            5689999999999999999999999999999999999999877654321 24   79999999988877654  455668


Q ss_pred             cccCCeEEEEeCCCCCcc
Q 044253           89 LFKVGGIVIYDNTLWGGT  106 (139)
Q Consensus        89 lL~~gG~ii~~~~~~~~~  106 (139)
                      +|+|||+|++||++|.|.
T Consensus       157 lLkpGGvIv~Ddvl~~g~  174 (214)
T d2cl5a1         157 LLRKGTVLLADNVIVPGT  174 (214)
T ss_dssp             CEEEEEEEEESCCCCCCC
T ss_pred             ccCCCcEEEEeCcCCCCC
Confidence            999999999999999874

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.48  E-value=9.2e-14  Score=98.90  Aligned_cols=92  Identities=14%  Similarity=0.183  Sum_probs=77.6

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cch
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNY   79 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~   79 (139)
                      ++++++.+++ +|++||.|+++++.+++|++..+..++++++++|+.+++..+...   ..   +||+||+|||+  ..+
T Consensus        55 ~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~---~~---~fDlIflDPPY~~~~~  128 (182)
T d2fhpa1          55 LAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE---KL---QFDLVLLDPPYAKQEI  128 (182)
T ss_dssp             HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCGGGCCH
T ss_pred             ccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhccc---CC---CcceEEechhhhhhHH
Confidence            5787888876 699999999999999999999999889999999999998775432   35   89999999985  346


Q ss_pred             HHHHHHHh--hcccCCeEEEEeC
Q 044253           80 RNYRETLM--TLFKVGGIVIYDN  100 (139)
Q Consensus        80 ~~~~~~~~--~lL~~gG~ii~~~  100 (139)
                      ...++.+.  .+|+++|+++++.
T Consensus       129 ~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         129 VSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEc
Confidence            77788776  4799999999864

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.47  E-value=9.2e-14  Score=98.65  Aligned_cols=89  Identities=22%  Similarity=0.197  Sum_probs=77.6

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      +++..+....+|+++|+|+++++.|++|++.+|+.++++++++|+.+.+..       ..   .||+||++........+
T Consensus        47 ~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~-------~~---~~D~v~~~~~~~~~~~~  116 (186)
T d1l3ia_          47 VTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-------IP---DIDIAVVGGSGGELQEI  116 (186)
T ss_dssp             HHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-------SC---CEEEEEESCCTTCHHHH
T ss_pred             ccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc-------cC---CcCEEEEeCccccchHH
Confidence            345666677899999999999999999999999988999999999887543       35   89999999987788889


Q ss_pred             HHHHhhcccCCeEEEEeCC
Q 044253           83 RETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~  101 (139)
                      ++.+.+.|+|||++++...
T Consensus       117 ~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_         117 LRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             HHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHhCcCCEEEEEee
Confidence            9999999999999987543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.47  E-value=7.4e-14  Score=96.52  Aligned_cols=89  Identities=19%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY   79 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~   79 (139)
                      |+++++.+++ +|++||.|+++++.+++|++.++..++++++++|+..+++..      ..   +||+||+|||..  .+
T Consensus        28 ~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~------~~---~fDiIf~DPPy~~~~~   98 (152)
T d2esra1          28 LAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TG---RFDLVFLDPPYAKETI   98 (152)
T ss_dssp             HHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CS---CEEEEEECCSSHHHHH
T ss_pred             HHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc------cc---ccceeEechhhccchH
Confidence            5677776764 899999999999999999999999889999999999987654      46   899999999853  34


Q ss_pred             HHHHHHHh--hcccCCeEEEEeC
Q 044253           80 RNYRETLM--TLFKVGGIVIYDN  100 (139)
Q Consensus        80 ~~~~~~~~--~lL~~gG~ii~~~  100 (139)
                      ...++.+.  ++|++||+++++.
T Consensus        99 ~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          99 VATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCcCCCeEEEEEe
Confidence            45666654  4799999999863

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=1.6e-13  Score=105.51  Aligned_cols=92  Identities=23%  Similarity=0.268  Sum_probs=77.6

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----   77 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----   77 (139)
                      |+++++..++ +|+++|+|+++++.|++|++.+|+.++++++++|+.+.+..+...   ..   +||+|++|++..    
T Consensus       159 ~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~---~~---~fD~Vi~DpP~~~~~~  232 (324)
T d2as0a2         159 FAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GE---KFDIVVLDPPAFVQHE  232 (324)
T ss_dssp             HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCSCSSG
T ss_pred             hhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc---cC---CCCchhcCCccccCCH
Confidence            5677777765 799999999999999999999999889999999999988765433   45   899999999742    


Q ss_pred             --------chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 --------NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 --------~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                              .|.+++..+.++|+|||+|++..
T Consensus       233 ~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         233 KDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                    36667888889999999998753

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.45  E-value=2.1e-13  Score=104.68  Aligned_cols=91  Identities=13%  Similarity=0.254  Sum_probs=77.5

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---   77 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---   77 (139)
                      |++.++..++ +|++||+|+.+++.|++|++.+|+. ++++++++|++++++.+..+   ..   +||+|++||+.-   
T Consensus       158 ~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~---~~---~fD~Ii~DPP~f~~~  231 (317)
T d2b78a2         158 FSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HL---TYDIIIIDPPSFARN  231 (317)
T ss_dssp             HHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCC---
T ss_pred             HHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh---cC---CCCEEEEcChhhccc
Confidence            6788777666 6999999999999999999999984 68999999999999876543   45   899999999731   


Q ss_pred             ---------chHHHHHHHhhcccCCeEEEEe
Q 044253           78 ---------NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ---------~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                               .|.+++..+.++|+|||+|++.
T Consensus       232 ~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~  262 (317)
T d2b78a2         232 KKEVFSVSKDYHKLIRQGLEILSENGLIIAS  262 (317)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                     3667888888999999999974

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=2.1e-13  Score=104.66  Aligned_cols=91  Identities=23%  Similarity=0.293  Sum_probs=76.2

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----   77 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----   77 (139)
                      |+++.+..+.+|+++|+|+.+++.|++|++.+|+ ++++++++|+.+++..+...   .+   +||+|++|++..     
T Consensus       159 ~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~---~~---~fD~Vi~DpP~~~~~~~  231 (318)
T d1wxxa2         159 FALHLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKE---GE---RFDLVVLDPPAFAKGKK  231 (318)
T ss_dssp             HHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCSCCSTT
T ss_pred             HHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhh---hc---CCCEEEEcCCccccchH
Confidence            5677787888999999999999999999999999 47999999999988766433   35   899999998632     


Q ss_pred             -------chHHHHHHHhhcccCCeEEEEeC
Q 044253           78 -------NYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        78 -------~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                             .|..++..+.++|+|||+|++..
T Consensus       232 ~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         232 DVERAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             SHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence                   24567778889999999998743

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.38  E-value=6.2e-13  Score=101.72  Aligned_cols=91  Identities=9%  Similarity=0.000  Sum_probs=73.6

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----   77 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----   77 (139)
                      |+++++..+++|++||.|+.+++.|++|++.+|+.+ +++++++|+.+++......   ..   +||+|++||+.-    
T Consensus       146 ~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~---~~---~fD~IilDPP~f~~~~  219 (309)
T d2igta1         146 ASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR---GS---TYDIILTDPPKFGRGT  219 (309)
T ss_dssp             HHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH---TC---CBSEEEECCCSEEECT
T ss_pred             HHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc---CC---CCCEEEECCCcccccc
Confidence            678888889999999999999999999999999954 6999999999998775443   35   899999998731    


Q ss_pred             ---------chHHHHHHHhhcccCCeEEEEe
Q 044253           78 ---------NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ---------~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                               ++..++..+..+|++||.+++-
T Consensus       220 ~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~  250 (309)
T d2igta1         220 HGEVWQLFDHLPLMLDICREILSPKALGLVL  250 (309)
T ss_dssp             TCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence                     1233445666899999975543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.7e-12  Score=91.06  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=72.1

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY   79 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~   79 (139)
                      ++++++.+++ +|++||.|+++++.+++|++..+. .+++++++|+.+++...      ..   +||+||+|||+.  .+
T Consensus        57 ~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~------~~---~fDlIf~DPPY~~~~~  126 (183)
T d2fpoa1          57 LGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GT---PHNIVFVDPPFRRGLL  126 (183)
T ss_dssp             HHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CC---CEEEEEECCSSSTTTH
T ss_pred             eeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeeccccccccc------cc---ccCEEEEcCccccchH
Confidence            4677777766 799999999999999999999887 46899999999987543      46   899999999854  35


Q ss_pred             HHHHHHHh--hcccCCeEEEEe
Q 044253           80 RNYRETLM--TLFKVGGIVIYD   99 (139)
Q Consensus        80 ~~~~~~~~--~lL~~gG~ii~~   99 (139)
                      ...++.+.  .+|+++|+++++
T Consensus       127 ~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         127 EETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCCCCCeEEEEE
Confidence            66677666  479999999986

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=2.2e-12  Score=90.69  Aligned_cols=90  Identities=13%  Similarity=0.152  Sum_probs=67.2

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-chHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-NYRN   81 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~~~~   81 (139)
                      ++++++.++++|++||+|+++++.+++|++.+|+.++  +...++..++......   .+   +||+||+||++. ....
T Consensus        55 ~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~--v~~~~~d~~~~~~~~~---~~---~fD~If~DPPY~~~~~~  126 (171)
T d1ws6a1          55 VGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGAR--VVALPVEVFLPEAKAQ---GE---RFTVAFMAPPYAMDLAA  126 (171)
T ss_dssp             HHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCE--EECSCHHHHHHHHHHT---TC---CEEEEEECCCTTSCTTH
T ss_pred             hhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccc--eeeeehhccccccccc---CC---ccceeEEccccccCHHH
Confidence            4678888899999999999999999999999999765  5555665554433211   35   899999999743 3334


Q ss_pred             HHHHHh--hcccCCeEEEEeC
Q 044253           82 YRETLM--TLFKVGGIVIYDN  100 (139)
Q Consensus        82 ~~~~~~--~lL~~gG~ii~~~  100 (139)
                      .+..+.  .+|++||+++++.
T Consensus       127 ~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         127 LFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEE
T ss_pred             HHHHHHHcCCcCCCeEEEEEe
Confidence            444443  5899999999864

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=2e-12  Score=96.57  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=73.9

Q ss_pred             CCchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253            2 PFNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus         2 ~~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~   80 (139)
                      +|++..|..+ ++|+++|+|+++++.+++|++.+|+.++++++++|+.++..        +.   .||.|+++++. ...
T Consensus       120 ~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~~---~~D~Ii~~~p~-~~~  187 (260)
T d2frna1         120 HLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------EN---IADRILMGYVV-RTH  187 (260)
T ss_dssp             TTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CS---CEEEEEECCCS-SGG
T ss_pred             HHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------CC---CCCEEEECCCC-chH
Confidence            6889888776 59999999999999999999999999999999999987632        35   89999998764 334


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+++.+.++|++||++.+..
T Consensus       188 ~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         188 EFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             GGHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHhhcCCCCEEEEEe
Confidence            57788889999999997643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=1.5e-11  Score=91.61  Aligned_cols=86  Identities=13%  Similarity=0.067  Sum_probs=71.8

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR   83 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~   83 (139)
                      ++.+++.+.+|+++|+|+++++.|++|++.+|+.  ++++++|..+.++        .+   +||+|+++........++
T Consensus       135 ~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~--------~~---~fD~V~ani~~~~l~~l~  201 (254)
T d2nxca1         135 AIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--------FG---PFDLLVANLYAELHAALA  201 (254)
T ss_dssp             HHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--------GC---CEEEEEEECCHHHHHHHH
T ss_pred             HHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccccc--------cc---ccchhhhccccccHHHHH
Confidence            4667777899999999999999999999999984  5789999876532        36   899999987655567788


Q ss_pred             HHHhhcccCCeEEEEeCCC
Q 044253           84 ETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        84 ~~~~~lL~~gG~ii~~~~~  102 (139)
                      +.+.+.|+|||++++.+++
T Consensus       202 ~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         202 PRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             HHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEEecc
Confidence            8888999999999986543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.20  E-value=2.3e-11  Score=86.17  Aligned_cols=92  Identities=11%  Similarity=0.144  Sum_probs=73.2

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--   78 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--   78 (139)
                      +|+++..+++ +|++||.|.++++.+++|++..+..+ ...++..|+...+.....    ..   +||+||+|||+..  
T Consensus        57 ~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~----~~---~fDlIFlDPPY~~~~  129 (183)
T d2ifta1          57 LGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN----QP---HFDVVFLDPPFHFNL  129 (183)
T ss_dssp             HHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS----SC---CEEEEEECCCSSSCH
T ss_pred             eeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccccc----CC---cccEEEechhHhhhh
Confidence            4678887766 89999999999999999999998844 688899999888654311    24   7999999998653  


Q ss_pred             hHHHHHHHh--hcccCCeEEEEeCC
Q 044253           79 YRNYRETLM--TLFKVGGIVIYDNT  101 (139)
Q Consensus        79 ~~~~~~~~~--~lL~~gG~ii~~~~  101 (139)
                      +...++.+.  .+|+++|+++++.-
T Consensus       130 ~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         130 AEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCcCCCcEEEEEec
Confidence            456666665  48999999999754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.10  E-value=7.1e-11  Score=83.81  Aligned_cols=85  Identities=13%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---   78 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---   78 (139)
                      |++..+....+|+++|+|+.+++.|++|++.+++. .+++++.+|..+.++        ++   +||+|+++++...   
T Consensus        66 ~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--------~~---~fD~Ii~~~p~~~~~~  134 (194)
T d1dusa_          66 IGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--------DR---KYNKIITNPPIRAGKE  134 (194)
T ss_dssp             HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TS---CEEEEEECCCSTTCHH
T ss_pred             hHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--------cC---CceEEEEcccEEecch
Confidence            34556667789999999999999999999999985 469999999876432        35   8999999986432   


Q ss_pred             -hHHHHHHHhhcccCCeEEEE
Q 044253           79 -YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 -~~~~~~~~~~lL~~gG~ii~   98 (139)
                       ...+++.+.++|+|||.+++
T Consensus       135 ~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         135 VLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhHHHHHHHhcCcCcEEEE
Confidence             24567888899999999875

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=5.2e-11  Score=87.00  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~   86 (139)
                      .+.+|++||+|+.+++.|+++....|+.++++++++|+.+...        ++   +||+|++-..   ..++...++.+
T Consensus        55 ~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~--------~~---~fD~v~~~~~~~~~~d~~~~l~~~  123 (245)
T d1nkva_          55 HGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--------NE---KCDVAACVGATWIAGGFAGAEELL  123 (245)
T ss_dssp             TCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--------SS---CEEEEEEESCGGGTSSSHHHHHHH
T ss_pred             cCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc--------cC---ceeEEEEEehhhccCCHHHHHHHH
Confidence            3579999999999999999999999998899999999987521        46   8999997542   23567899999


Q ss_pred             hhcccCCeEEEEeCCCCCc
Q 044253           87 MTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~~~~~  105 (139)
                      .+.|+|||.+++.+..+..
T Consensus       124 ~r~LkPGG~l~i~~~~~~~  142 (245)
T d1nkva_         124 AQSLKPGGIMLIGEPYWRQ  142 (245)
T ss_dssp             TTSEEEEEEEEEEEEEETT
T ss_pred             HHHcCcCcEEEEEeccccC
Confidence            9999999999997665544

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=2.6e-10  Score=85.64  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------   77 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------   77 (139)
                      +|++.....+|+++|+|+++++.|++|++.+++ ++++++++|.++.+.        +.   +||+|+++|++-      
T Consensus       125 ~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~--------~~---~fDlIvsNPPYi~~~~~~  192 (274)
T d2b3ta1         125 ALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALA--------GQ---QFAMIVSNPPYIDEQDPH  192 (274)
T ss_dssp             HHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGT--------TC---CEEEEEECCCCBCTTCHH
T ss_pred             HHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccC--------CC---ceeEEEecchhhhhhhhc
Confidence            345555678999999999999999999999999 479999999877542        35   899999998641      


Q ss_pred             ----------------------chHHHHHHHhhcccCCeEEEEeCC
Q 044253           78 ----------------------NYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        78 ----------------------~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                                            .+..+++.+.++|++||.++++..
T Consensus       193 ~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig  238 (274)
T d2b3ta1         193 LQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  238 (274)
T ss_dssp             HHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             ccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                                  134466777789999999998643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.99  E-value=2.7e-10  Score=81.72  Aligned_cols=85  Identities=13%  Similarity=0.148  Sum_probs=68.3

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRN   81 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~   81 (139)
                      ...+..+.+|+++|+|+++++.|++++...+. ++++++++|+.+. + +.     .+   +||+|++-..   ..+...
T Consensus        31 ~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l-~-~~-----~~---~fD~v~~~~~l~~~~d~~~   99 (231)
T d1vl5a_          31 NAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQM-P-FT-----DE---RFHIVTCRIAAHHFPNPAS   99 (231)
T ss_dssp             HHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CC-C-SC-----TT---CEEEEEEESCGGGCSCHHH
T ss_pred             HHHHHhCCEEEEEECCHHHHhhhhhccccccc-ccccccccccccc-c-cc-----cc---ccccccccccccccCCHHH
Confidence            34455678999999999999999999999987 5799999999874 2 22     35   8999998753   235677


Q ss_pred             HHHHHhhcccCCeEEEEeC
Q 044253           82 YRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~  100 (139)
                      .+..+.++|+|||++++.+
T Consensus       100 ~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_         100 FVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             HHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEEe
Confidence            8999999999999988754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=3.1e-10  Score=82.35  Aligned_cols=83  Identities=22%  Similarity=0.265  Sum_probs=66.4

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------cc
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------DN   78 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------~~   78 (139)
                      +..+..+.+|++||+|++|++.|++++...+.  +++++++|+.++ + +      ++   +||+|++-...      .+
T Consensus        57 ~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l-~-~------~~---~fD~I~~~~~~~~~~~~~~  123 (251)
T d1wzna1          57 LELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI-A-F------KN---EFDAVTMFFSTIMYFDEED  123 (251)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC-C-C------CS---CEEEEEECSSGGGGSCHHH
T ss_pred             hhhcccceEEEEEeeccccccccccccccccc--cchheehhhhhc-c-c------cc---ccchHhhhhhhhhcCChHH
Confidence            44556678999999999999999999998876  699999999775 2 2      35   89999985321      23


Q ss_pred             hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ....++.+.+.|+|||+++++-
T Consensus       124 ~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         124 LRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEe
Confidence            4567888999999999999864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=4.1e-10  Score=81.49  Aligned_cols=85  Identities=13%  Similarity=0.170  Sum_probs=68.7

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRN   81 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~   81 (139)
                      ...+..+.+|++||+|+.+++.|++++...++ +++.++++|+.+. + +.     ++   +||+|++-...   .+...
T Consensus        32 ~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~d~~~  100 (234)
T d1xxla_          32 LAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL-P-FP-----DD---SFDIITCRYAAHHFSDVRK  100 (234)
T ss_dssp             HHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC-C-SC-----TT---CEEEEEEESCGGGCSCHHH
T ss_pred             HHHHHhCCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccc-c-cc-----cc---ccceeeeeceeecccCHHH
Confidence            34455677999999999999999999999988 5799999999763 2 21     45   89999986532   35678


Q ss_pred             HHHHHhhcccCCeEEEEeC
Q 044253           82 YRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~  100 (139)
                      ++..+.++|+|||++++.+
T Consensus       101 ~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_         101 AVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             HHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHeeCCCcEEEEEE
Confidence            8999999999999988743

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.93  E-value=6.9e-10  Score=80.74  Aligned_cols=83  Identities=18%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-------C
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-------K   76 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-------~   76 (139)
                      ..+.+..+.+|++||.|++|++.|++++...+.  +++++++|+..+  .+      .+   +||+|++-..       .
T Consensus        52 ~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~--~~------~~---~fD~i~~~~~~~~~~~~~  118 (246)
T d1y8ca_          52 TENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNL--NI------NR---KFDLITCCLDSTNYIIDS  118 (246)
T ss_dssp             HHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGC--CC------SC---CEEEEEECTTGGGGCCSH
T ss_pred             HHHHHHhCCccEeeccchhhhhhccccccccCc--cceeeccchhhh--cc------cc---cccccceeeeeeeccCCH
Confidence            345566778999999999999999999988886  599999999875  12      35   8999997422       1


Q ss_pred             cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      .+...++..+.++|+|||.++++
T Consensus       119 ~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         119 DDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCeEEEEE
Confidence            13345788999999999999974

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.90  E-value=4.3e-10  Score=83.33  Aligned_cols=75  Identities=8%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+++|+++++++.|++|++..+..++++++++|+.+.+.        +.   +||.||+|.+  +.+.+++.+.+.|
T Consensus       110 ~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--------~~---~fD~V~ld~p--~p~~~l~~~~~~L  176 (250)
T d1yb2a1         110 KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--------DQ---MYDAVIADIP--DPWNHVQKIASMM  176 (250)
T ss_dssp             SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--------SC---CEEEEEECCS--CGGGSHHHHHHTE
T ss_pred             CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--------cc---eeeeeeecCC--chHHHHHHHHHhc
Confidence            458999999999999999999998777899999999876532        45   8999999975  3456788999999


Q ss_pred             cCCeEEEE
Q 044253           91 KVGGIVIY   98 (139)
Q Consensus        91 ~~gG~ii~   98 (139)
                      +|||++++
T Consensus       177 KpGG~lv~  184 (250)
T d1yb2a1         177 KPGSVATF  184 (250)
T ss_dssp             EEEEEEEE
T ss_pred             CCCceEEE
Confidence            99999987

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.90  E-value=6.1e-10  Score=82.80  Aligned_cols=84  Identities=8%  Similarity=0.095  Sum_probs=69.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~   86 (139)
                      .+++|++||+|+.+++.|+++....|+.++++++++|+.+. + +.     .+   +||+|++-..   ..+...++..+
T Consensus        89 ~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~-~~-----~~---sfD~V~~~~~l~h~~d~~~~l~~~  158 (282)
T d2o57a1          89 FGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-CE-----DN---SYDFIWSQDAFLHSPDKLKVFQEC  158 (282)
T ss_dssp             HCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-SC-----TT---CEEEEEEESCGGGCSCHHHHHHHH
T ss_pred             CCcEEEEEeccchhhhhhhcccccccccccccccccccccc-c-cc-----cc---ccchhhccchhhhccCHHHHHHHH
Confidence            36789999999999999999999999988999999999774 2 21     35   8999998542   23567789999


Q ss_pred             hhcccCCeEEEEeCCCC
Q 044253           87 MTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~~~  103 (139)
                      .++|+|||++++.+...
T Consensus       159 ~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         159 ARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             HHHEEEEEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEEEeec
Confidence            99999999998865543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=5.7e-09  Score=78.16  Aligned_cols=87  Identities=7%  Similarity=0.103  Sum_probs=71.1

Q ss_pred             chhhhh-hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCc
Q 044253            4 NLESTF-FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKD   77 (139)
Q Consensus         4 ~~~~~~-~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~   77 (139)
                      ++..+. .+.+|++||+|+++++.|++.++..|+..++.+...|..+.          ..   +||.|++-.     +..
T Consensus        67 a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----------~~---~fD~i~si~~~eh~~~~  133 (280)
T d2fk8a1          67 MRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AE---PVDRIVSIEAFEHFGHE  133 (280)
T ss_dssp             HHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CC---CCSEEEEESCGGGTCGG
T ss_pred             HHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----------cc---chhhhhHhhHHHHhhhh
Confidence            334443 37899999999999999999999999988999999987643          35   899998754     334


Q ss_pred             chHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           78 NYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      ++..+|+.+.++|+|||.+++..+..
T Consensus       134 ~~~~~f~~i~~~LkpgG~~~i~~i~~  159 (280)
T d2fk8a1         134 NYDDFFKRCFNIMPADGRMTVQSSVS  159 (280)
T ss_dssp             GHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             hHHHHHHHHHhccCCCceEEEEEeec
Confidence            67889999999999999999876543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2e-09  Score=78.00  Aligned_cols=87  Identities=16%  Similarity=0.083  Sum_probs=68.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------chHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------NYRNY   82 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~~~~~   82 (139)
                      ..+|++||+|+++++.|+++.+..+  .++.++.+++......+.     ..   +||.|+.|....        +...+
T Consensus        76 ~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~---~fD~i~fD~~~~~~~~~~~~~~~~~  145 (229)
T d1zx0a1          76 IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DG---HFDGILYDTYPLSEETWHTHQFNFI  145 (229)
T ss_dssp             EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC-----TT---CEEEEEECCCCCBGGGTTTHHHHHH
T ss_pred             CCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccc-----cc---cccceeecccccccccccccCHHHH
Confidence            3579999999999999999987765  468999999988765543     35   899999997422        23557


Q ss_pred             HHHHhhcccCCeEEEEeCCCCCccc
Q 044253           83 RETLMTLFKVGGIVIYDNTLWGGTV  107 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~~~~~~~  107 (139)
                      ++.+.++|+|||++++.+....+..
T Consensus       146 ~~~~~r~LkpGG~~~~~~~~~~~~~  170 (229)
T d1zx0a1         146 KNHAFRLLKPGGVLTYCNLTSWGEL  170 (229)
T ss_dssp             HHTHHHHEEEEEEEEECCHHHHHHH
T ss_pred             HHHHHHHcCCCcEEEEEecCCcchh
Confidence            8888999999999998766554443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.83  E-value=2.1e-09  Score=77.84  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      -+.+|+++|++++.++.|++|++..|+ ++++++++|+....+.       ..   +||.|++.+.....+   +.+.++
T Consensus       100 ~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~-------~~---pfD~Iiv~~a~~~ip---~~l~~q  165 (215)
T d1jg1a_         100 VKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPP-------KA---PYDVIIVTAGAPKIP---EPLIEQ  165 (215)
T ss_dssp             HCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG-------GC---CEEEEEECSBBSSCC---HHHHHT
T ss_pred             hCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcc-------cC---cceeEEeecccccCC---HHHHHh
Confidence            356799999999999999999999998 5899999999876433       36   899999988655443   245678


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |++||++++-
T Consensus       166 L~~gGrLv~p  175 (215)
T d1jg1a_         166 LKIGGKLIIP  175 (215)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCCEEEEE
Confidence            9999999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.82  E-value=2.6e-09  Score=75.42  Aligned_cols=85  Identities=12%  Similarity=-0.008  Sum_probs=69.0

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----Ccc
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDN   78 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~   78 (139)
                      +++.+.++.+|++||+|+++++.|+++....++ +++++..+|+....  .      ++   +||+|++...     ...
T Consensus        45 ~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~--~------~~---~fD~I~~~~~~~~~~~~~  112 (198)
T d2i6ga1          45 SLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLT--F------DG---EYDFILSTVVMMFLEAQT  112 (198)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCC--C------CC---CEEEEEEESCGGGSCTTH
T ss_pred             HHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhhhheeccccc--c------cc---cccEEEEeeeeecCCHHH
Confidence            345567788999999999999999999999998 47999999987652  1      46   8999998652     233


Q ss_pred             hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ...+++.+.+.|+|||++++..
T Consensus       113 ~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         113 IPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEE
Confidence            5678899999999999998753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=1.5e-09  Score=77.01  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----ch
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NY   79 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~   79 (139)
                      ...+..+.+|+++|+|++|++.|++++...+.  .+.++++|+.+. + ..     .+   +||+|++-....     +.
T Consensus        53 ~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l-~-~~-----~~---~fD~I~~~~~l~~~~~~d~  120 (226)
T d1ve3a1          53 FLLEDYGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL-S-FE-----DK---TFDYVIFIDSIVHFEPLEL  120 (226)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC-C-SC-----TT---CEEEEEEESCGGGCCHHHH
T ss_pred             hhHhhhhcccccccccccchhhhhhhhccccc--cccccccccccc-c-cc-----Cc---CceEEEEecchhhCChhHH
Confidence            44556678999999999999999999988774  478899999874 2 11     36   899999865322     34


Q ss_pred             HHHHHHHhhcccCCeEEEEeCC
Q 044253           80 RNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        80 ~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      ..+++.+.++|+|||.+++...
T Consensus       121 ~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         121 NQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCcCcEEEEEEc
Confidence            5578889999999999987643

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=8.7e-09  Score=76.98  Aligned_cols=85  Identities=13%  Similarity=0.051  Sum_probs=66.0

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----------   78 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----------   78 (139)
                      ..++|+++|+|++++++|++|++++++.+++.++++|..+.+...      ..   +||+|+++|++-.           
T Consensus       132 ~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~------~~---~fDlIVsNPPYI~~~~~l~~~~~~  202 (271)
T d1nv8a_         132 SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK------FA---SIEMILSNPPYVKSSAHLPKDVLF  202 (271)
T ss_dssp             SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG------TT---TCCEEEECCCCBCGGGSCTTSCCC
T ss_pred             ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc------cC---cccEEEEcccccCcccccceeeee
Confidence            467899999999999999999999999989999999998765432      35   8999999985310           


Q ss_pred             -----------hHHHH-HHHhhcccCCeEEEEeCCCC
Q 044253           79 -----------YRNYR-ETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 -----------~~~~~-~~~~~lL~~gG~ii~~~~~~  103 (139)
                                 -..++ +.+.++|++||+++++...-
T Consensus       203 EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~  239 (271)
T d1nv8a_         203 EPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  239 (271)
T ss_dssp             SCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             ccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH
Confidence                       01222 33447999999999976543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.79  E-value=1.8e-09  Score=80.51  Aligned_cols=75  Identities=16%  Similarity=0.136  Sum_probs=65.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      .++|+++|+++++++.|++|++..|+.+++.+..+|+...+.        ..   .||.||+|.+  +++.+++.+.+.|
T Consensus       128 ~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~--------~~---~~D~V~~d~p--~p~~~l~~~~~~L  194 (266)
T d1o54a_         128 SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--------EK---DVDALFLDVP--DPWNYIDKCWEAL  194 (266)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--------CC---SEEEEEECCS--CGGGTHHHHHHHE
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc--------cc---ceeeeEecCC--CHHHHHHHHHhhc
Confidence            468999999999999999999999998899999999754321        35   7999999975  5677899999999


Q ss_pred             cCCeEEEE
Q 044253           91 KVGGIVIY   98 (139)
Q Consensus        91 ~~gG~ii~   98 (139)
                      ||||.+++
T Consensus       195 KpGG~lv~  202 (266)
T d1o54a_         195 KGGGRFAT  202 (266)
T ss_dssp             EEEEEEEE
T ss_pred             CCCCEEEE
Confidence            99999986

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.78  E-value=9.2e-09  Score=76.93  Aligned_cols=78  Identities=12%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc---------CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV---------EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----   77 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~---------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----   77 (139)
                      .+|++||+|++.++.|++.+...         ...+|++++.+|+..++++       ..   +||+|++|....     
T Consensus        96 ~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-------~~---~yDvIi~D~~~~~~~~~  165 (276)
T d1mjfa_          96 DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------NR---GFDVIIADSTDPVGPAK  165 (276)
T ss_dssp             SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------CC---CEEEEEEECCCCC----
T ss_pred             ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-------cC---CCCEEEEeCCCCCCCcc
Confidence            47999999999999999876432         2357999999999999864       46   899999997322     


Q ss_pred             --chHHHHHHHhhcccCCeEEEEe
Q 044253           78 --NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 --~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                        .-.++++.+.+.|++||++++.
T Consensus       166 ~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         166 VLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             -TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCHHHHHhhHhhcCCCceEEEe
Confidence              1256889999999999999864

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=3.5e-09  Score=76.26  Aligned_cols=74  Identities=22%  Similarity=0.307  Sum_probs=60.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|+++++++.|+++++..++ +++.++++|+.+.+..       ..   +||+|++.+......   +.+.+.|+
T Consensus       101 g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~-------~~---~fD~I~~~~~~~~~p---~~l~~~Lk  166 (213)
T d1dl5a1         101 GLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPE-------FS---PYDVIFVTVGVDEVP---ETWFTQLK  166 (213)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG-------GC---CEEEEEECSBBSCCC---HHHHHHEE
T ss_pred             CcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHcccc-------cc---chhhhhhhccHHHhH---HHHHHhcC
Confidence            4799999999999999999999998 4789999998875432       35   899999998655443   34567899


Q ss_pred             CCeEEEEe
Q 044253           92 VGGIVIYD   99 (139)
Q Consensus        92 ~gG~ii~~   99 (139)
                      |||++++-
T Consensus       167 pGG~lv~p  174 (213)
T d1dl5a1         167 EGGRVIVP  174 (213)
T ss_dssp             EEEEEEEE
T ss_pred             CCcEEEEE
Confidence            99999873

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=9.4e-09  Score=78.18  Aligned_cols=79  Identities=16%  Similarity=0.193  Sum_probs=64.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc--C--CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----c-----
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV--E--VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----D-----   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g--~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----~-----   77 (139)
                      ..+|++||+|++.++.|++++...  +  -.+|++++.+|+.+++.+.      +.   +||+|++|..-    .     
T Consensus       101 ~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~------~~---~yDvIi~D~~dp~~~~~~~~~  171 (312)
T d1uira_         101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------EE---RYDVVIIDLTDPVGEDNPARL  171 (312)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------CC---CEEEEEEECCCCBSTTCGGGG
T ss_pred             cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc------CC---cccEEEEeCCCcccccchhhh
Confidence            358999999999999999997542  2  1568999999999998764      46   89999998621    1     


Q ss_pred             -chHHHHHHHhhcccCCeEEEE
Q 044253           78 -NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 -~~~~~~~~~~~lL~~gG~ii~   98 (139)
                       .-.++++.+.+.|+|||++++
T Consensus       172 L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         172 LYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             GSSHHHHHHHHHTEEEEEEEEE
T ss_pred             hhhHHHHHHHHHhcCCCceEEE
Confidence             125788999999999999986

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.9e-09  Score=81.49  Aligned_cols=78  Identities=14%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc----------CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV----------EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~----------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~   80 (139)
                      ..+|+++|+++++++.|++|++..          +..++++++++|+......+.     ..   .||.||+|.+  ..+
T Consensus       123 ~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~-----~~---~fD~V~LD~p--~P~  192 (324)
T d2b25a1         123 QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK-----SL---TFDAVALDML--NPH  192 (324)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---------------EEEEEECSS--STT
T ss_pred             CcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccC-----CC---CcceEeecCc--CHH
Confidence            458999999999999999999864          345789999999876533332     35   7999999975  345


Q ss_pred             HHHHHHhhcccCCeEEEE
Q 044253           81 NYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~   98 (139)
                      ..++.+.+.|||||++++
T Consensus       193 ~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         193 VTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             TTHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHHhccCCCEEEE
Confidence            578889999999999986

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.75  E-value=6.8e-09  Score=75.88  Aligned_cols=85  Identities=11%  Similarity=0.026  Sum_probs=64.8

Q ss_pred             hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------
Q 044253            6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------   78 (139)
Q Consensus         6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------   78 (139)
                      .++..+ .+|++||+|+++++.|++.....+...++.++++|+.......      ++   +||+|++-.....      
T Consensus        41 ~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~------~~---~fD~V~~~~~l~~~~~~~~  111 (252)
T d1ri5a_          41 KYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL------GK---EFDVISSQFSFHYAFSTSE  111 (252)
T ss_dssp             HHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC------SS---CEEEEEEESCGGGGGSSHH
T ss_pred             HHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc------cc---cceEEEEcceeeecCCCHH
Confidence            344444 4799999999999999999988888778999999986431111      35   8999998654322      


Q ss_pred             -hHHHHHHHhhcccCCeEEEEe
Q 044253           79 -YRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        79 -~~~~~~~~~~lL~~gG~ii~~   99 (139)
                       ...++..+.+.|+|||++++.
T Consensus       112 ~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         112 SLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHhceeCCCCEEEEE
Confidence             245778888999999999873

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.8e-09  Score=78.10  Aligned_cols=80  Identities=14%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~   80 (139)
                      ..+|+.||+|++.++.|++.+..+  .+ .+|++++.+|+.+++...      .+   +||+|++|...+       .-.
T Consensus       102 ~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~------~~---~yDvIi~D~~~p~~~~~~L~t~  172 (285)
T d2o07a1         102 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------QD---AFDVIITDSSDPMGPAESLFKE  172 (285)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------SS---CEEEEEEECC-----------C
T ss_pred             cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC------CC---CCCEEEEcCCCCCCcccccccH
Confidence            357999999999999999987542  12 579999999999999764      46   899999996321       123


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      ++++.+.+.|++||++++.
T Consensus       173 eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         173 SYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             HHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCeEEEe
Confidence            5788899999999999975

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=7.1e-09  Score=78.34  Aligned_cols=79  Identities=11%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------chH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------NYR   80 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~~~   80 (139)
                      .+|++||+|++.++.|++.+...  ++ .+|++++.+|+.+++.+.      +.   +||+|++|..-.        .-.
T Consensus       114 ~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~---~yDvIi~D~~dp~~~~~~~L~t~  184 (295)
T d1inla_         114 EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KN---EFDVIIIDSTDPTAGQGGHLFTE  184 (295)
T ss_dssp             SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SS---CEEEEEEEC----------CCSH
T ss_pred             ceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC------CC---CCCEEEEcCCCCCcCchhhhccH
Confidence            47999999999999999987643  22 479999999999998764      46   899999996211        135


Q ss_pred             HHHHHHhhcccCCeEEEEe
Q 044253           81 NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~   99 (139)
                      ++++.+.+.|+|||++++.
T Consensus       185 efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         185 EFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             HHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhhcCCCcEEEEe
Confidence            7889999999999999975

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=1.1e-08  Score=76.60  Aligned_cols=79  Identities=11%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc-C-C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV-E-V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRN   81 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~-g-~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~   81 (139)
                      .+|++||+|++.++.|++.+... + + .+|++++.+|+..++.+.      ++   +||+|++|...+       .-.+
T Consensus       100 ~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~------~~---~yDvIi~D~~~p~~~~~~L~t~e  170 (274)
T d1iy9a_         100 KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------EN---QYDVIMVDSTEPVGPAVNLFTKG  170 (274)
T ss_dssp             SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CS---CEEEEEESCSSCCSCCCCCSTTH
T ss_pred             ceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc------CC---CCCEEEEcCCCCCCcchhhccHH
Confidence            58999999999999999987542 2 2 568999999999999764      46   899999996321       2357


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      +++.+.+.|+|||+++..
T Consensus       171 Fy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         171 FYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHhhcCCCceEEEe
Confidence            889999999999999975

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=1.5e-08  Score=72.64  Aligned_cols=82  Identities=12%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------   78 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------   78 (139)
                      ......+++||+++.++..|.++++..|+ ++++++++|+...+..+.     ..   ++|.|++..+-+.         
T Consensus        50 ~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~-----~~---~~d~v~i~fp~P~~k~~h~k~R  120 (204)
T d2fcaa1          50 QNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFE-----PG---EVKRVYLNFSDPWPKKRHEKRR  120 (204)
T ss_dssp             HCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCC-----TT---SCCEEEEESCCCCCSGGGGGGS
T ss_pred             hCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccC-----ch---hhhccccccccccchhhhcchh
Confidence            33467899999999999999999999999 489999999998765443     35   8999887532111         


Q ss_pred             --hHHHHHHHhhcccCCeEEEE
Q 044253           79 --YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 --~~~~~~~~~~lL~~gG~ii~   98 (139)
                        ...+++.+.+.|+|||.|.+
T Consensus       121 l~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         121 LTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             TTSHHHHHHHHHHHTTSCEEEE
T ss_pred             hhHHHHHHHHHHhCCCCcEEEE
Confidence              25689999999999999876

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.71  E-value=5.8e-09  Score=77.69  Aligned_cols=76  Identities=13%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc--CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV--EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+|+++|+++++++.|++|++..  +..++++++++|+.+.  .+.     +.   +||.||+|.+  +.+..++.+.+
T Consensus       121 ~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--~~~-----~~---~fDaV~ldlp--~P~~~l~~~~~  188 (264)
T d1i9ga_         121 AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELP-----DG---SVDRAVLDML--APWEVLDAVSR  188 (264)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCC-----TT---CEEEEEEESS--CGGGGHHHHHH
T ss_pred             CcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc--ccc-----CC---CcceEEEecC--CHHHHHHHHHh
Confidence            468999999999999999999875  4457899999998764  221     35   8999999974  45678889999


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      .|||||.+++
T Consensus       189 ~LkpGG~lv~  198 (264)
T d1i9ga_         189 LLVAGGVLMV  198 (264)
T ss_dssp             HEEEEEEEEE
T ss_pred             ccCCCCEEEE
Confidence            9999999986

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.5e-09  Score=75.42  Aligned_cols=81  Identities=6%  Similarity=0.043  Sum_probs=64.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~   85 (139)
                      ..+|++||+|+++++.||+++...+. .+++++++|+.+..  ..     .+   +||+|++......     ...++..
T Consensus        83 ~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~--~~-----~~---~fD~I~~~~~l~h~~~~~~~~~l~~  151 (222)
T d2ex4a1          83 FREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFT--PE-----PD---SYDVIWIQWVIGHLTDQHLAEFLRR  151 (222)
T ss_dssp             CSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCC--CC-----SS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCEEEEeecCHHHhhccccccccccc-cccccccccccccc--cc-----cc---cccccccccccccchhhhhhhHHHH
Confidence            45799999999999999999988776 47899999998752  11     35   8999998754322     2457888


Q ss_pred             HhhcccCCeEEEEeCCC
Q 044253           86 LMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~  102 (139)
                      +.+.|+|||.+++.+..
T Consensus       152 i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         152 CKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             HHHHEEEEEEEEEEEEE
T ss_pred             HHHhcCCcceEEEEEcc
Confidence            99999999999886443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.71  E-value=1.1e-08  Score=73.36  Aligned_cols=81  Identities=10%  Similarity=0.113  Sum_probs=66.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~~~~   84 (139)
                      .+++|++||+|++|++.|++++...+...++++..+|+.+. +        ..   .+|+|++...     ..+...+++
T Consensus        64 ~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-~--------~~---~~d~i~~~~~l~~~~~~d~~~~l~  131 (225)
T d1im8a_          64 PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--------IK---NASMVILNFTLQFLPPEDRIALLT  131 (225)
T ss_dssp             SSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-C--------CC---SEEEEEEESCGGGSCGGGHHHHHH
T ss_pred             CCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-c--------cc---cceeeEEeeeccccChhhHHHHHH
Confidence            46789999999999999999999888878899999998764 1        35   7899888542     235567899


Q ss_pred             HHhhcccCCeEEEEeCCC
Q 044253           85 TLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~  102 (139)
                      .+.+.|+|||.+++.+..
T Consensus       132 ~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         132 KIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             HHHHHEEEEEEEEEEEEC
T ss_pred             HHHHhCCCCceeeccccc
Confidence            999999999999986544

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.70  E-value=1.6e-08  Score=76.15  Aligned_cols=81  Identities=15%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc---CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV---EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRN   81 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~---g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~   81 (139)
                      .+|++||+|++.++.+++.+...   -..+|++++.+|+.+++.+..     +.   +||+|++|..-.       .-.+
T Consensus       105 ~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~-----~~---~yDvIi~D~~dp~~~~~~L~t~e  176 (290)
T d1xj5a_         105 EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-----EG---SYDAVIVDSSDPIGPAKELFEKP  176 (290)
T ss_dssp             CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-----TT---CEEEEEECCCCTTSGGGGGGSHH
T ss_pred             eeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc-----cc---CccEEEEcCCCCCCcchhhCCHH
Confidence            47999999999999999987532   225799999999999987642     35   899999997321       1256


Q ss_pred             HHHHHhhcccCCeEEEEeC
Q 044253           82 YRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~  100 (139)
                      +++.+.+.|+|||++++.-
T Consensus       177 F~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         177 FFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCcEEEEec
Confidence            8999999999999999753

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=3e-08  Score=74.64  Aligned_cols=83  Identities=7%  Similarity=0.039  Sum_probs=70.1

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------------C
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------------K   76 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------------~   76 (139)
                      ..+.+|++|++|++.++.|++.+...|+.+++++...|....          ++   +||.|++-..            .
T Consensus        82 ~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~----------~~---~fD~i~sie~~eH~~~~~~~~~~  148 (291)
T d1kpia_          82 EYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------DE---PVDRIVSLGAFEHFADGAGDAGF  148 (291)
T ss_dssp             HHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------CC---CCSEEEEESCGGGTTCCSSCCST
T ss_pred             hcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc----------cc---ccceEeechhHHhcchhhhhhHH
Confidence            457899999999999999999999999999999999997422          46   8999997431            1


Q ss_pred             cchHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYDNTLWG  104 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~~~~~~  104 (139)
                      .+|..+++.+.++|+|||.+++..+...
T Consensus       149 ~~~~~~f~~i~~~LkpgG~~~l~~i~~~  176 (291)
T d1kpia_         149 ERYDTFFKKFYNLTPDDGRMLLHTITIP  176 (291)
T ss_dssp             THHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence            3578899999999999999999877653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=2.8e-08  Score=74.59  Aligned_cols=83  Identities=8%  Similarity=0.077  Sum_probs=70.1

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRN   81 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~   81 (139)
                      +...+++|++|++|++.++.|++.+...|+.+++++..+|+...          +.   +||.|+.=.     ...++..
T Consensus        81 a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----------~~---~fD~i~si~~~eh~~~~~~~~  147 (285)
T d1kpga_          81 VEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------DE---PVDRIVSIGAFEHFGHERYDA  147 (285)
T ss_dssp             HHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------CC---CCSEEEEESCGGGTCTTTHHH
T ss_pred             HhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----------cc---cccceeeehhhhhcCchhHHH
Confidence            34457899999999999999999999999999999999998543          35   899998743     3346788


Q ss_pred             HHHHHhhcccCCeEEEEeCCC
Q 044253           82 YRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      +++.+.++|+|||.+++..+.
T Consensus       148 ~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         148 FFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             HHHHHHHHSCTTCEEEEEEEE
T ss_pred             HHHHHHhhcCCCCcEEEEEEe
Confidence            999999999999999987764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=8.6e-09  Score=74.83  Aligned_cols=76  Identities=17%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      ..+|+++|+++++++.|++|+++.+.    .++++++++|+......       ..   +||.|++++......   +.+
T Consensus       101 ~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-------~~---~fD~I~~~~~~~~ip---~~l  167 (224)
T d1i1na_         101 TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-------EA---PYDAIHVGAAAPVVP---QAL  167 (224)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------GC---CEEEEEECSBBSSCC---HHH
T ss_pred             CceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch-------hh---hhhhhhhhcchhhcC---HHH
Confidence            45899999999999999999988765    25799999999865432       46   899999998654433   456


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      .+.|+|||++++-
T Consensus       168 ~~~LkpGG~LV~p  180 (224)
T d1i1na_         168 IDQLKPGGRLILP  180 (224)
T ss_dssp             HHTEEEEEEEEEE
T ss_pred             HhhcCCCcEEEEE
Confidence            7899999999873

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.66  E-value=2e-08  Score=76.33  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRN   81 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~   81 (139)
                      .+|++||+|++.++.|++.+....  + .+|++++.+|+.+++...      ..   +||+|++|..-.       .-..
T Consensus       131 ~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~------~~---~yDvII~D~~dp~~~~~~L~t~e  201 (312)
T d2b2ca1         131 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KN---EFDVIITDSSDPVGPAESLFGQS  201 (312)
T ss_dssp             CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TT---CEEEEEECCC-------------
T ss_pred             ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC------CC---CCCEEEEcCCCCCCcchhhhhHH
Confidence            579999999999999999875422  2 478999999999998764      46   899999996321       1246


Q ss_pred             HHHHHhhcccCCeEEEEe
Q 044253           82 YRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~~   99 (139)
                      +++.+.+.|+|||+++..
T Consensus       202 Fy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         202 YYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHhhcCCCcEEEEe
Confidence            788899999999999975

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.66  E-value=6.7e-09  Score=71.85  Aligned_cols=91  Identities=11%  Similarity=-0.053  Sum_probs=67.3

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCC-----------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEV-----------DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV   72 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~-----------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~   72 (139)
                      ++..|..+.+|++||+|++|++.|++..+..+.           ...++++++|+.+.-...      ..   .||+|+.
T Consensus        35 a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~------~~---~~D~i~~  105 (201)
T d1pjza_          35 MSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD------IG---HCAAFYD  105 (201)
T ss_dssp             HHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH------HH---SEEEEEE
T ss_pred             HHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc------cc---ceeEEEE
Confidence            566778899999999999999999998865432           234688999988753322      35   7999987


Q ss_pred             cCCC-----cchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           73 DAHK-----DNYRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        73 D~~~-----~~~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      -...     .....+++.+.+.|+|||.+++....+
T Consensus       106 ~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_         106 RAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             EeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            5432     234567888999999999987654333

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.4e-08  Score=76.31  Aligned_cols=89  Identities=12%  Similarity=0.112  Sum_probs=70.5

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN   81 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~   81 (139)
                      .|+|+.|....+|++||.++++++.|++|++.+|+. +++++.+++.+.+......   ..   +||+|++||+......
T Consensus       225 ~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~~~~~~~~---~~---~~d~vilDPPR~G~~~  297 (358)
T d1uwva2         225 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWA---KN---GFDKVLLDPARAGAAG  297 (358)
T ss_dssp             TTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGG---TT---CCSEEEECCCTTCCHH
T ss_pred             ccchhccccccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhhhhhhhhh---hc---cCceEEeCCCCccHHH
Confidence            488999988999999999999999999999999994 8999999998866443211   24   7999999998766666


Q ss_pred             HHHHHhhcccCCeEEEE
Q 044253           82 YRETLMTLFKVGGIVIY   98 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~   98 (139)
                      .+..+.+. ++.-++.+
T Consensus       298 ~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         298 VMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             HHHHHHHH-CCSEEEEE
T ss_pred             HHHHHHHc-CCCEEEEE
Confidence            66666543 56666554

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.63  E-value=2.2e-08  Score=74.53  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~   87 (139)
                      +++|+++|+|+.+++.|++++...+.  +++++++|+.+. + +      .+   +||+|++...   ..+....++.+.
T Consensus        52 ~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~-~-~------~~---~fD~v~~~~~l~~~~d~~~~l~~~~  118 (281)
T d2gh1a1          52 GSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-L------ND---KYDIAICHAFLLHMTTPETMLQKMI  118 (281)
T ss_dssp             TCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-C------SS---CEEEEEEESCGGGCSSHHHHHHHHH
T ss_pred             CCEEEEEecchhHhhhhhcccccccc--cccccccccccc-c-c------cC---CceEEEEehhhhcCCCHHHHHHHHH
Confidence            46899999999999999999998875  699999998764 2 2      35   8999998763   235677899999


Q ss_pred             hcccCCeEEEEeCCCC
Q 044253           88 TLFKVGGIVIYDNTLW  103 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~~  103 (139)
                      +.|+|||.+++.+..|
T Consensus       119 ~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1         119 HSVKKGGKIICFEPHW  134 (281)
T ss_dssp             HTEEEEEEEEEEECCH
T ss_pred             HHcCcCcEEEEEECCc
Confidence            9999999998866544

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.3e-08  Score=72.08  Aligned_cols=90  Identities=10%  Similarity=-0.065  Sum_probs=67.4

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcC----------------CCCcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVE----------------VDLKINLMESRALPALDQLLKDEKIHFFFENF   67 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g----------------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~f   67 (139)
                      ++..|..+.+||+||+|+++++.|++.....+                ...+++++++|....-...      ..   .|
T Consensus        60 a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~------~~---~f  130 (229)
T d2bzga1          60 MKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTN------IG---KF  130 (229)
T ss_dssp             HHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSC------CC---CE
T ss_pred             HHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccc------cC---ce
Confidence            45667789999999999999999998765321                1247999999998763322      35   89


Q ss_pred             eEEEEcCC-----CcchHHHHHHHhhcccCCeEEEEeCCC
Q 044253           68 DYAFVDAH-----KDNYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        68 D~If~D~~-----~~~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      |+|+.-..     ......++..+.++|+|||.+++....
T Consensus       131 d~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         131 DMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             EEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             eEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            99987542     234567889999999999987765443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.56  E-value=3e-08  Score=72.08  Aligned_cols=76  Identities=14%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      |....+|+++|+++++++.|++++...   ++++++++|.....+.       ..   +||.|++.+......   +.+.
T Consensus        89 a~l~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~-------~~---pfD~Iiv~~a~~~ip---~~l~  152 (224)
T d1vbfa_          89 AEIVDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEE-------EK---PYDRVVVWATAPTLL---CKPY  152 (224)
T ss_dssp             HHHSSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGG-------GC---CEEEEEESSBBSSCC---HHHH
T ss_pred             HHHhcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchh-------hh---hHHHHHhhcchhhhh---HHHH
Confidence            445678999999999999999987643   5899999998765332       35   899999988654433   4567


Q ss_pred             hcccCCeEEEEe
Q 044253           88 TLFKVGGIVIYD   99 (139)
Q Consensus        88 ~lL~~gG~ii~~   99 (139)
                      ++|++||++++-
T Consensus       153 ~qLk~GGrLV~p  164 (224)
T d1vbfa_         153 EQLKEGGIMILP  164 (224)
T ss_dssp             HTEEEEEEEEEE
T ss_pred             HhcCCCCEEEEE
Confidence            899999999873

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=8.7e-08  Score=71.21  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCC---CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVD---LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----   76 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~---~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----   76 (139)
                      +.+.+..+.+|++||+|++|++.|+++....+..   .+..+...+....-..+..    .+   +||+|++-...    
T Consensus        71 ~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~fd~v~~~~~~~~~~  143 (292)
T d1xvaa_          71 SIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA----GD---GFDAVICLGNSFAHL  143 (292)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC----TT---CEEEEEECSSCGGGS
T ss_pred             HHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC----CC---CceEEEEecCchhhc
Confidence            3456667889999999999999999998877653   2355666777654322211    35   89999974321    


Q ss_pred             -------cchHHHHHHHhhcccCCeEEEEeC
Q 044253           77 -------DNYRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        77 -------~~~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                             .....+++.+.+.|+|||+++++.
T Consensus       144 ~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         144 PDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             CCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence                   124457899999999999999864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.53  E-value=1.8e-08  Score=73.14  Aligned_cols=74  Identities=15%  Similarity=0.158  Sum_probs=59.2

Q ss_pred             cceeEEeCCccHHHHHHHHHHHc-----CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKV-----EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~-----g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .+|+++|+++++++.|++|+...     ++ .++.++++|+.+..+.       ..   +||.|++++.....+   +.+
T Consensus       111 ~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~~-------~~---~fD~Iiv~~a~~~~p---~~l  176 (223)
T d1r18a_         111 TRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPP-------NA---PYNAIHVGAAAPDTP---TEL  176 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGG-------GC---SEEEEEECSCBSSCC---HHH
T ss_pred             cEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEEEEeccccccccc-------cc---ceeeEEEEeechhch---HHH
Confidence            47999999999999999997654     33 4799999999875432       46   899999998765544   346


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      .++|++||++++-
T Consensus       177 ~~~Lk~gG~lV~p  189 (223)
T d1r18a_         177 INQLASGGRLIVP  189 (223)
T ss_dssp             HHTEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEE
Confidence            7899999999873

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.50  E-value=2.1e-07  Score=72.22  Aligned_cols=79  Identities=15%  Similarity=0.041  Sum_probs=66.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCC--------------cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDL--------------KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~--------------~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ..+|+++|+|+++++.+++|++.++..+              .+.+.+.|+...+...      ++   .||+|.+||- 
T Consensus        69 ~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~------~~---~fDvIDiDPf-  138 (375)
T d2dula1          69 AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER------HR---YFHFIDLDPF-  138 (375)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS------TT---CEEEEEECCS-
T ss_pred             CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhh------cC---cCCcccCCCC-
Confidence            3479999999999999999999997642              4788999998886543      35   7999999984 


Q ss_pred             cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      .....+++.+.+.++.||++.+.
T Consensus       139 Gs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         139 GSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcHHHHHHHHHHhccCCEEEEE
Confidence            45577999999999999999885

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=3.5e-08  Score=70.58  Aligned_cols=79  Identities=18%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC----CcchH
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH----KDNYR   80 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~----~~~~~   80 (139)
                      ...+..+++|+++|+|+++++.|+++.    ..   .++++|+.+. + +.     .+   +||+|++-..    ..+..
T Consensus        58 ~~l~~~~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~l-~-~~-----~~---~fD~ii~~~~~~~~~~d~~  120 (246)
T d2avna1          58 LFLQERGFEVVLVDPSKEMLEVAREKG----VK---NVVEAKAEDL-P-FP-----SG---AFEAVLALGDVLSYVENKD  120 (246)
T ss_dssp             HHHHTTTCEEEEEESCHHHHHHHHHHT----CS---CEEECCTTSC-C-SC-----TT---CEEEEEECSSHHHHCSCHH
T ss_pred             ccccccceEEEEeeccccccccccccc----cc---cccccccccc-c-cc-----cc---cccceeeecchhhhhhhHH
Confidence            345566789999999999999999862    21   3567888764 2 21     35   8999997432    23567


Q ss_pred             HHHHHHhhcccCCeEEEEeC
Q 044253           81 NYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ..++.+.++|+|||++++.-
T Consensus       121 ~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         121 KAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHhhcCcCcEEEEEE
Confidence            78899999999999999863

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=1.2e-07  Score=71.47  Aligned_cols=85  Identities=12%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             chhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------
Q 044253            4 NLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------   76 (139)
Q Consensus         4 ~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------   76 (139)
                      ++.+|..+ .+|++||.|+. ...++++++.+++.++++++++++.+. + ..     .+   +||+|+++...      
T Consensus        48 s~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~-~-~~-----~~---~~D~ivs~~~~~~l~~e  116 (316)
T d1oria_          48 CMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEV-E-LP-----VE---KVDIIISEWMGYCLFYE  116 (316)
T ss_dssp             HHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTC-C-CS-----SS---CEEEEEECCCBBTBTBT
T ss_pred             HHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHc-c-cc-----cc---eeEEEeeeeeeeeeccH
Confidence            45666666 47999999975 688889999999999999999999875 1 11     35   89999987521      


Q ss_pred             cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ..+..++..+.++|+|||.++..
T Consensus       117 ~~~~~~l~~~~r~Lkp~G~iiP~  139 (316)
T d1oria_         117 SMLNTVLHARDKWLAPDGLIFPD  139 (316)
T ss_dssp             CCHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHHHHHHHHHhcCCCCeEEEee
Confidence            23567788888999999999753

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.43  E-value=1.3e-07  Score=67.61  Aligned_cols=83  Identities=14%  Similarity=0.202  Sum_probs=65.4

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---Cc------
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KD------   77 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~------   77 (139)
                      .......+++||+++.++..|.+.+...++. ++.++++|+..+...+.     ..   ++|.|++..+   ..      
T Consensus        51 ~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~-----~~---~~~~i~i~fPdPw~K~~h~kr  121 (204)
T d1yzha1          51 KQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFE-----DG---EIDRLYLNFSDPWPKKRHEKR  121 (204)
T ss_dssp             HHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSC-----TT---CCSEEEEESCCCCCSGGGGGG
T ss_pred             HHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhcc-----CC---ceehhcccccccccchhhhhh
Confidence            3334678999999999999999999999994 79999999987654332     35   8999887432   11      


Q ss_pred             --chHHHHHHHhhcccCCeEEEE
Q 044253           78 --NYRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        78 --~~~~~~~~~~~lL~~gG~ii~   98 (139)
                        ....+++.+.+.|+|||.+.+
T Consensus       122 Rl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         122 RLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             STTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hhhHHHHHHHHHHhCCCCcEEEE
Confidence              125789999999999999976

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.42  E-value=1.5e-07  Score=67.42  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNY   82 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~   82 (139)
                      ..+..+.+|++||+|+++++.||++.     .++++++++++.+..  .      ++   +||+|++-...   .+....
T Consensus        37 ~l~~~g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~--~------~~---~fD~I~~~~vleh~~d~~~~  100 (225)
T d2p7ia1          37 RLQEHFNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQ--L------PR---RYDNIVLTHVLEHIDDPVAL  100 (225)
T ss_dssp             HHTTTCSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCC--C------SS---CEEEEEEESCGGGCSSHHHH
T ss_pred             HHHHcCCeEEEEeCcHHHhhhhhccc-----ccccccccccccccc--c------cc---ccccccccceeEecCCHHHH
Confidence            34445678999999999999999764     246999999987641  2      45   89999986532   345667


Q ss_pred             HHHHh-hcccCCeEEEEe
Q 044253           83 RETLM-TLFKVGGIVIYD   99 (139)
Q Consensus        83 ~~~~~-~lL~~gG~ii~~   99 (139)
                      +..+. ++|+|||++++.
T Consensus       101 l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1         101 LKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             HHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCceEEEE
Confidence            77877 689999999985

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=1.9e-07  Score=70.70  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             chhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------C
Q 044253            4 NLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------K   76 (139)
Q Consensus         4 ~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~   76 (139)
                      ++.+|..++ +|+++|.|+ ++..|+++.+.++..++++++++++.+. + +.     .+   +||+|++...      .
T Consensus        53 s~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l-~-~~-----~~---~~D~i~se~~~~~~~~e  121 (328)
T d1g6q1_          53 SMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV-H-LP-----FP---KVDIIISEWMGYFLLYE  121 (328)
T ss_dssp             HHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-C-CS-----SS---CEEEEEECCCBTTBSTT
T ss_pred             HHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc-c-Cc-----cc---ceeEEEEEecceeeccc
Confidence            455666654 899999996 7899999999999999999999998875 1 21     35   8999998642      1


Q ss_pred             cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      .....++....++|+|||+++-.
T Consensus       122 ~~~~~~~~a~~r~LkpgG~iiP~  144 (328)
T d1g6q1_         122 SMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             CCHHHHHHHHHHHEEEEEEEESC
T ss_pred             hhHHHHHHHHHhccCCCeEEEee
Confidence            23455677777899999999743

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.39  E-value=4.5e-07  Score=66.07  Aligned_cols=79  Identities=10%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE   84 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~   84 (139)
                      ...+++++|+ +++++.+++++...|+.++++++.+|+++.   .      ..   +||+|++-....+     ...+++
T Consensus       103 p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~---~------~~---~~D~v~~~~vlh~~~d~~~~~~L~  169 (253)
T d1tw3a2         103 PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---L------PR---KADAIILSFVLLNWPDHDAVRILT  169 (253)
T ss_dssp             TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SS---CEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh---c------cc---chhheeeccccccCCchhhHHHHH
Confidence            3568999998 789999999999999989999999998653   1      24   7999998653322     235688


Q ss_pred             HHhhcccCCeEEEEeCC
Q 044253           85 TLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~  101 (139)
                      .+.+.|+|||.+++.+.
T Consensus       170 ~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         170 RCAEALEPGGRILIHER  186 (253)
T ss_dssp             HHHHTEEEEEEEEEEEC
T ss_pred             HHHHhcCCCcEEEEEec
Confidence            89999999999887554

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.9e-07  Score=68.58  Aligned_cols=67  Identities=12%  Similarity=0.176  Sum_probs=51.5

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      |++....++++++|+|+++++.|++|++.+++.+++.+++++....+.. +...  .++   +||+|+++|++
T Consensus        79 l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~--~~~---~fD~ivsNPPY  146 (250)
T d2h00a1          79 LGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEE--SEI---IYDFCMCNPPF  146 (250)
T ss_dssp             HHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTC--CSC---CBSEEEECCCC
T ss_pred             HHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhc--ccC---ceeEEEecCcc
Confidence            4555667899999999999999999999999999999998776543311 1100  024   79999999864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=7.5e-07  Score=63.03  Aligned_cols=82  Identities=21%  Similarity=0.210  Sum_probs=62.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----------   78 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----------   78 (139)
                      ...+|+++|+|+++++.|+++++..+  +++++++++..+. .......+ .+   +||.|++|.+...           
T Consensus        46 ~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~-~~~~~~~~-~~---~vdgIl~DlGvSs~Qld~~~r~~~  118 (192)
T d1m6ya2          46 PGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREA-DFLLKTLG-IE---KVDGILMDLGVSTYQLKGENRELE  118 (192)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGH-HHHHHHTT-CS---CEEEEEEECSCCHHHHHTSHTHHH
T ss_pred             CCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhH-HHHHHHcC-CC---CcceeeeccchhHhhhhhhhccch
Confidence            45789999999999999999998765  6899999988764 22222211 35   8999999976532           


Q ss_pred             -hHHHHHHHhhcccCCeEEEE
Q 044253           79 -YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 -~~~~~~~~~~lL~~gG~ii~   98 (139)
                       ..+.++.+.++|++||.+++
T Consensus       119 ~~~~~L~~a~~~Lk~gG~l~i  139 (192)
T d1m6ya2         119 NLKEFLKKAEDLLNPGGRIVV  139 (192)
T ss_dssp             HHHHHHHHGGGGEEEEEEEEE
T ss_pred             hHHHHHHHHHHhcCCCCeeee
Confidence             23566777899999999986

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.33  E-value=2.3e-07  Score=68.04  Aligned_cols=80  Identities=6%  Similarity=0.018  Sum_probs=61.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET   85 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~   85 (139)
                      ..+|++||.|+++++.||+++...   .+++++++|+.++-  ..     ..   +||+|++-....+     ...+++.
T Consensus       116 ~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~--~~-----~~---~fD~I~~~~vl~hl~d~d~~~~l~~  182 (254)
T d1xtpa_         116 YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT--LP-----PN---TYDLIVIQWTAIYLTDADFVKFFKH  182 (254)
T ss_dssp             CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC--CC-----SS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccc--cC-----CC---ccceEEeeccccccchhhhHHHHHH
Confidence            347999999999999999886533   46899999998752  11     35   8999998764322     2467889


Q ss_pred             HhhcccCCeEEEEeCCCC
Q 044253           86 LMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        86 ~~~lL~~gG~ii~~~~~~  103 (139)
                      +.+.|+|||.+++.+...
T Consensus       183 ~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         183 CQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             HHHHEEEEEEEEEEEEBC
T ss_pred             HHHhcCCCcEEEEEecCC
Confidence            999999999999865444

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.3e-07  Score=68.75  Aligned_cols=86  Identities=14%  Similarity=0.076  Sum_probs=64.0

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----   76 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----   76 (139)
                      +++.+|+.++ +|+++|.|+.+. .|+++...++..++++++++|+.+. . ..     ..   +||+|+++...     
T Consensus        49 lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l-~-~~-----~~---~~D~Ivse~~~~~~~~  117 (311)
T d2fyta1          49 LSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEV-H-LP-----VE---KVDVIISEWMGYFLLF  117 (311)
T ss_dssp             HHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTS-C-CS-----CS---CEEEEEECCCBTTBTT
T ss_pred             HHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHh-c-Cc-----cc---cceEEEEeeeeeeccc
Confidence            4566777765 799999999875 5777778888888999999999875 2 11     35   89999986521     


Q ss_pred             -cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 -DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 -~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                       .....++....++|+|||.++..
T Consensus       118 e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1         118 ESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             TCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccHHHHHHHHhcCCCCcEEecc
Confidence             12345566666899999999753

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=2.1e-07  Score=65.40  Aligned_cols=78  Identities=15%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRE   84 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~   84 (139)
                      +....++++||+|+++++.|+++        +++++++|+.+. + ..     ++   +||+|++-..   ..+...++.
T Consensus        51 ~~~~~~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l-~-~~-----~~---~fD~I~~~~~l~h~~d~~~~l~  112 (208)
T d1vlma_          51 AVPLKIKIGVEPSERMAEIARKR--------GVFVLKGTAENL-P-LK-----DE---SFDFALMVTTICFVDDPERALK  112 (208)
T ss_dssp             HHHHTCCEEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-SC-----TT---CEEEEEEESCGGGSSCHHHHHH
T ss_pred             ccccceEEEEeCChhhccccccc--------cccccccccccc-c-cc-----cc---cccccccccccccccccccchh
Confidence            34456899999999999999873        479999999765 2 11     35   8999998653   235677899


Q ss_pred             HHhhcccCCeEEEEeCCCC
Q 044253           85 TLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~~~  103 (139)
                      .+.+.|+|||.+++.....
T Consensus       113 ~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_         113 EAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             HHHHHEEEEEEEEEEEECS
T ss_pred             hhhhcCCCCceEEEEecCC
Confidence            9999999999998875443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.29  E-value=2.6e-07  Score=65.72  Aligned_cols=59  Identities=7%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ++++++.+++ +|++||+|+++++.|++|++.++.  +.+++++|+...          ..   +||+||+||+.
T Consensus        60 l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~----------~~---~fD~Vi~nPP~  119 (201)
T d1wy7a1          60 LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF----------NS---RVDIVIMNPPF  119 (201)
T ss_dssp             HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC----------CC---CCSEEEECCCC
T ss_pred             HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh----------CC---cCcEEEEcCcc
Confidence            3455666664 899999999999999999998885  589999998653          36   89999999975

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.22  E-value=1.2e-06  Score=62.47  Aligned_cols=79  Identities=15%  Similarity=0.096  Sum_probs=60.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~~~~~~l   89 (139)
                      ..+|++||+|+++++.|+++.+..+   ++.++++|+.... .....   ..   .+|+||.|... .....++..+.+.
T Consensus        80 ~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~-~~~~~---~~---~vd~v~~~~~~~~~~~~~l~~~~~~  149 (209)
T d1nt2a_          80 EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPW-KYSGI---VE---KVDLIYQDIAQKNQIEILKANAEFF  149 (209)
T ss_dssp             TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGG-GTTTT---CC---CEEEEEECCCSTTHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcc-ccccc---cc---eEEEEEecccChhhHHHHHHHHHHH
Confidence            3589999999999999999988764   6999999987642 11100   24   78999988643 3455678888999


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+|||.+++.
T Consensus       150 LkpgG~l~i~  159 (209)
T d1nt2a_         150 LKEKGEVVIM  159 (209)
T ss_dssp             EEEEEEEEEE
T ss_pred             hccCCeEEEE
Confidence            9999999864

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.17  E-value=1.2e-06  Score=64.04  Aligned_cols=81  Identities=9%  Similarity=0.021  Sum_probs=63.7

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNY   82 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~   82 (139)
                      +....+++++|+ +++++.|++++...|..+++.++.+|.++.   .      ..   +||+|++-.-..+     ...+
T Consensus       102 ~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~---~------p~---~~D~v~~~~vLh~~~d~~~~~l  168 (256)
T d1qzza2         102 RAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L------PV---TADVVLLSFVLLNWSDEDALTI  168 (256)
T ss_dssp             HCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SC---CEEEEEEESCGGGSCHHHHHHH
T ss_pred             hhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc---c------cc---cchhhhccccccccCcHHHHHH
Confidence            334678999998 889999999999999999999999998753   2      25   7999998643222     2457


Q ss_pred             HHHHhhcccCCeEEEEeCC
Q 044253           83 RETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii~~~~  101 (139)
                      ++.+.+.|+|||.+++-+.
T Consensus       169 L~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         169 LRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             HHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHhhcCCcceeEEEEe
Confidence            8889999999998876553

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=5.2e-06  Score=61.73  Aligned_cols=84  Identities=15%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----------   78 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----------   78 (139)
                      ...+|+++|+++..+...+++++..|.. .+.+...|.... ....     ..   .||.|++|++...           
T Consensus       125 ~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~-~~~~-----~~---~fd~IL~DaPCSg~G~~rr~p~~~  194 (284)
T d1sqga2         125 PEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPS-QWCG-----EQ---QFDRILLDAPCSATGVIRRHPDIK  194 (284)
T ss_dssp             TTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTH-HHHT-----TC---CEEEEEEECCCCCGGGTTTCTTHH
T ss_pred             hhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccc-hhcc-----cc---cccEEEEeccccccCccccccchh
Confidence            3467999999999999999999999985 455555554432 2111     35   7999999986431           


Q ss_pred             --------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 --------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 --------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                    -..+++.+.++|++||+||+.....
T Consensus       195 ~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         195 WLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             HHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             hccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence                          0235667778999999999765554

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.9e-06  Score=60.05  Aligned_cols=84  Identities=7%  Similarity=0.022  Sum_probs=60.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCc--EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLK--INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL   86 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~--i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~   86 (139)
                      .++++||+|+.+++.|++++........  +.+.+.++.++........ +..   +||+|++-..   ..+....++.+
T Consensus        71 ~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~fD~I~~~~~l~~~~d~~~~l~~l  146 (280)
T d1jqea_          71 INNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK-ELQ---KWDFIHMIQMLYYVKDIPATLKFF  146 (280)
T ss_dssp             EEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS-SCC---CEEEEEEESCGGGCSCHHHHHHHH
T ss_pred             eEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC-CCC---ceeEEEEccceecCCCHHHHHHHH
Confidence            4689999999999999999876544333  4567777776643321110 034   8999998542   23567889999


Q ss_pred             hhcccCCeEEEEe
Q 044253           87 MTLFKVGGIVIYD   99 (139)
Q Consensus        87 ~~lL~~gG~ii~~   99 (139)
                      .++|+|||++++.
T Consensus       147 ~~~LkpgG~l~i~  159 (280)
T d1jqea_         147 HSLLGTNAKMLII  159 (280)
T ss_dssp             HHTEEEEEEEEEE
T ss_pred             HhhCCCCCEEEEE
Confidence            9999999998764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=2.1e-06  Score=63.06  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=53.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      ...++++||+|+.+++.|++..      .+++++++|+.+. + +.     ++   +||+|+.-.....    ++.+.+.
T Consensus       107 ~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l-~-~~-----~~---sfD~v~~~~~~~~----~~e~~rv  166 (268)
T d1p91a_         107 PEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-FS-----DT---SMDAIIRIYAPCK----AEELARV  166 (268)
T ss_dssp             TTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-BC-----TT---CEEEEEEESCCCC----HHHHHHH
T ss_pred             CCCEEEEecchHhhhhhhhccc------ccccceeeehhhc-c-CC-----CC---CEEEEeecCCHHH----HHHHHHH
Confidence            3568999999999999998752      4689999999764 2 22     46   8999997543223    4567889


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |||||++++.
T Consensus       167 LkpgG~l~~~  176 (268)
T d1p91a_         167 VKPGGWVITA  176 (268)
T ss_dssp             EEEEEEEEEE
T ss_pred             hCCCcEEEEE
Confidence            9999999884

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.02  E-value=2e-06  Score=63.14  Aligned_cols=63  Identities=8%  Similarity=0.008  Sum_probs=50.8

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +..|..+++|++||.++......+.+++.+..        ..|++++++|+.+++...      ..   +||+||+||..
T Consensus       104 ~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~------~~---~~DvIYlDPMF  174 (250)
T d2oyra1         104 FVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TP---RPQVVYLDPMF  174 (250)
T ss_dssp             HHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC------SS---CCSEEEECCCC
T ss_pred             HHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc------CC---CCCEEEECCCC
Confidence            34455689999999999999999988876532        238999999999998765      35   79999999843

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.02  E-value=4.1e-06  Score=60.52  Aligned_cols=79  Identities=16%  Similarity=0.104  Sum_probs=59.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-chHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-NYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~~~~~~~~~~~l   89 (139)
                      ..+|+++|+++++++.++++++..+   ++..+.+|+.... .....   ..   .+|+||.|.... ....++..+.+.
T Consensus        98 ~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~-~~~~~---~~---~vD~i~~d~~~~~~~~~~l~~~~~~  167 (227)
T d1g8aa_          98 EGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPE-EYRAL---VP---KVDVIFEDVAQPTQAKILIDNAEVY  167 (227)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGG-GGTTT---CC---CEEEEEECCCSTTHHHHHHHHHHHH
T ss_pred             CCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcc-ccccc---cc---ceEEEEEEccccchHHHHHHHHHHh
Confidence            4689999999999999999886554   4777888876432 11110   35   899999998654 345678888999


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+|||.+++.
T Consensus       168 LkpgG~lvi~  177 (227)
T d1g8aa_         168 LKRGGYGMIA  177 (227)
T ss_dssp             EEEEEEEEEE
T ss_pred             cccCCeEEEE
Confidence            9999998864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=7e-06  Score=62.05  Aligned_cols=83  Identities=10%  Similarity=0.089  Sum_probs=59.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHc-------CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchH
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKV-------EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYR   80 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~-------g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~   80 (139)
                      ..++++||+++++++.|+++.+..       |. ..+++++++|+.+. + ....   ..   ..|+||+..-.  ....
T Consensus       175 ~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~-~-~~~~---~~---~advi~~~~~~f~~~~~  246 (328)
T d1nw3a_         175 CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-E-WRER---IA---NTSVIFVNNFAFGPEVD  246 (328)
T ss_dssp             CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH-H-HHHH---HH---HCSEEEECCTTTCHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc-c-cccc---cC---cceEEEEcceecchHHH
Confidence            347999999999999999876543       33 35799999999865 2 1110   12   46889986532  2344


Q ss_pred             HHHHHHhhcccCCeEEEEeCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      ..+..+.+.|||||.+|+...
T Consensus       247 ~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         247 HQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             HHHHHHHTTCCTTCEEEESSC
T ss_pred             HHHHHHHHhCCCCcEEEEecc
Confidence            567788899999999998543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.93  E-value=1.4e-05  Score=60.09  Aligned_cols=82  Identities=23%  Similarity=0.287  Sum_probs=63.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ...++++|+++..+...++|+++.|.. ++.+...|.... ...      ..   .||.|++|++...            
T Consensus       141 ~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~-~~~------~~---~fD~ILvDaPCSg~G~~~r~p~~~~  209 (313)
T d1ixka_         141 DGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHI-GEL------NV---EFDKILLDAPCTGSGTIHKNPERKW  209 (313)
T ss_dssp             CSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGG-GGG------CC---CEEEEEEECCTTSTTTCC-------
T ss_pred             ccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccc-ccc------cc---cccEEEEccccccCCceeeccchhh
Confidence            356999999999999999999999994 688888888765 322      45   8999999985421            


Q ss_pred             -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253           79 -------------YRNYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                                   -.+++..+.++|+|||++|+..-..
T Consensus       210 ~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         210 NRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence                         0235566778999999999765543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=3.9e-06  Score=59.49  Aligned_cols=55  Identities=15%  Similarity=0.101  Sum_probs=44.4

Q ss_pred             Cchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            3 FNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         3 ~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +++.++..+ .+|++||+|+++++.|++|+.      +++++++|+.+.          .+   +||+|++||+.
T Consensus        62 l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l----------~~---~fD~Vi~NPPf  117 (197)
T d1ne2a_          62 LACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SG---KYDTWIMNPPF  117 (197)
T ss_dssp             HHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CC---CEEEEEECCCC
T ss_pred             HHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhc----------CC---cceEEEeCccc
Confidence            345666665 469999999999999999863      578999998643          46   89999999975

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.86  E-value=2.3e-06  Score=62.16  Aligned_cols=78  Identities=15%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH-HHh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE-TLM   87 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~-~~~   87 (139)
                      .++|+++|+++........      ..++++++++|+.+.  +..+.     +.   .+|+||+|+++.....+.+ .+.
T Consensus       108 ~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~~~l~-----~~---~~dlIfID~~H~~~~v~~~~~~~  173 (232)
T d2bm8a1         108 DCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLR-----EM---AHPLIFIDNAHANTFNIMKWAVD  173 (232)
T ss_dssp             CCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGS-----SS---CSSEEEEESSCSSHHHHHHHHHH
T ss_pred             CceEEecCcChhhhhhhhc------cccceeeeecccccHHHHHHHH-----hc---CCCEEEEcCCcchHHHHHHHHHh
Confidence            3589999999876543321      236899999997542  23331     34   7999999998654433333 244


Q ss_pred             hcccCCeEEEEeCCC
Q 044253           88 TLFKVGGIVIYDNTL  102 (139)
Q Consensus        88 ~lL~~gG~ii~~~~~  102 (139)
                      ++|++||+++++|+.
T Consensus       174 ~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         174 HLLEEGDYFIIEDMI  188 (232)
T ss_dssp             HTCCTTCEEEECSCH
T ss_pred             cccCcCCEEEEEcCC
Confidence            899999999999874

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.8e-05  Score=57.86  Aligned_cols=58  Identities=16%  Similarity=0.118  Sum_probs=46.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      ..+|+++|+++..+..+++|+++.|+. ++.+...|+...-+... .   ..   +||.|++|++.
T Consensus       119 ~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~-~---~~---~fD~VL~DaPC  176 (293)
T d2b9ea1         119 QGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDP-R---YH---EVHYILLDPSC  176 (293)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCG-G---GT---TEEEEEECCCC
T ss_pred             CceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhccccc-c---cc---eeeEEeecCcc
Confidence            457999999999999999999999984 79999999876522211 0   24   79999999863

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=8.7e-06  Score=58.31  Aligned_cols=92  Identities=20%  Similarity=0.094  Sum_probs=55.5

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEE-------EeCChH--HHH-HhhHH----------------hhhcccCC
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINL-------MESRAL--PAL-DQLLK----------------DEKIHFFF   64 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~-------~~~da~--~~l-~~~~~----------------~~~~~~~~   64 (139)
                      ..+|+++|+|+.+++.|++++...+.......       +.+...  ..+ ..+..                ...+..  
T Consensus        74 ~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  151 (257)
T d2a14a1          74 FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLP--  151 (257)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCC--
T ss_pred             cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCC--
Confidence            44799999999999999999987654211000       000000  000 00000                000024  


Q ss_pred             CceeEEEEcCC-------CcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           65 ENFDYAFVDAH-------KDNYRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        65 ~~fD~If~D~~-------~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                       +||+|++-..       ...+..+++.+.++|+|||.+++.+....+
T Consensus       152 -~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         152 -LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             -CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             -cccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence             7999997532       124567889999999999999987765543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.78  E-value=1.8e-05  Score=57.07  Aligned_cols=80  Identities=13%  Similarity=0.013  Sum_probs=57.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHHHHHhhc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~~~~~~l   89 (139)
                      ..+|++||+|+.+++.++++....   +++..+.+|+..... ....   ..   .+|+++.+... .+...++..+.+.
T Consensus        98 ~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~-~~~~---~~---~v~~i~~~~~~~~~~~~~l~~~~r~  167 (230)
T d1g8sa_          98 KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQE-YANI---VE---KVDVIYEDVAQPNQAEILIKNAKWF  167 (230)
T ss_dssp             TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGG-GTTT---CC---CEEEEEECCCSTTHHHHHHHHHHHH
T ss_pred             CCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcc-cccc---cc---eeEEeeccccchHHHHHHHHHHHHh
Confidence            468999999999999999886554   467888888876532 2110   12   56667777643 3345668888899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+|||.+++..
T Consensus       168 LKpgG~~~i~~  178 (230)
T d1g8sa_         168 LKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cccCceEEEEe
Confidence            99999988653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=9.9e-06  Score=59.12  Aligned_cols=94  Identities=10%  Similarity=-0.014  Sum_probs=56.7

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCC-Cc----------------------------EEEEeCChHHHHHhhHHhh
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVD-LK----------------------------INLMESRALPALDQLLKDE   58 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~----------------------------i~~~~~da~~~l~~~~~~~   58 (139)
                      +.+..+|+++|.|+.+++.+++++...+.. +.                            ..+...|+..--. +....
T Consensus        74 ~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~-~~~~~  152 (263)
T d2g72a1          74 CSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQP-LGAGS  152 (263)
T ss_dssp             GGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSST-TCSSC
T ss_pred             cccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCc-cccCC
Confidence            344568999999999999999988654321 10                            0112222211000 00000


Q ss_pred             hcccCCCceeEEEEcC-------CCcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253           59 KIHFFFENFDYAFVDA-------HKDNYRNYRETLMTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        59 ~~~~~~~~fD~If~D~-------~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~  105 (139)
                      ....   +||+|++-.       +...+...++.+.++|||||++++.+.+...
T Consensus       153 ~~~~---~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~  203 (263)
T d2g72a1         153 PAPL---PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES  203 (263)
T ss_dssp             SSCS---SEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC
T ss_pred             cCcC---ccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCc
Confidence            0013   699998743       2234677788899999999999987665543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=9.3e-05  Score=52.52  Aligned_cols=77  Identities=12%  Similarity=-0.011  Sum_probs=65.6

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ....+++.||.+...+...++-....|+. +++++++.+.+...        ..   +||+|.+-+-. ....+++.+.+
T Consensus        87 ~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~--------~~---~fD~V~sRA~~-~~~~ll~~~~~  153 (207)
T d1jsxa_          87 RPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EP---PFDGVISRAFA-SLNDMVSWCHH  153 (207)
T ss_dssp             CTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CS---CEEEEECSCSS-SHHHHHHHHTT
T ss_pred             cccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhcc--------cc---ccceehhhhhc-CHHHHHHHHHH
Confidence            34679999999999999999999999994 79999999887521        35   89999988753 57778899999


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      +++++|.+++
T Consensus       154 ~l~~~g~~~~  163 (207)
T d1jsxa_         154 LPGEQGRFYA  163 (207)
T ss_dssp             SEEEEEEEEE
T ss_pred             hcCCCcEEEE
Confidence            9999999986

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.48  E-value=0.00026  Score=49.11  Aligned_cols=80  Identities=10%  Similarity=0.052  Sum_probs=58.0

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..+|+++|+|++++..|++.     ..+++.+++++....- +.....+ .+   ++|.|++|.+...            
T Consensus        40 ~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~-~~l~~~~-~~---~vdgIl~DLGvSs~qld~~~re~~~  109 (182)
T d1wg8a2          40 GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLK-RHLAALG-VE---RVDGILADLGVSSFHLDDPSDELNA  109 (182)
T ss_dssp             TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHH-HHHHHTT-CS---CEEEEEEECSCCHHHHHCGGTHHHH
T ss_pred             cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHH-HHHHHcC-CC---ccCEEEEEccCCHHHhhcchHHHHH
Confidence            46899999999999998763     2468999999887753 3322222 35   8999999975432            


Q ss_pred             hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 ~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                      ....++....+|++||.+++-.
T Consensus       110 ~~~~L~~~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2         110 LKEFLEQAAEVLAPGGRLVVIA  131 (182)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhhhCCCCeEEEEe
Confidence            1235677778999999998643

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.47  E-value=6.7e-05  Score=56.00  Aligned_cols=74  Identities=19%  Similarity=0.115  Sum_probs=57.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      .+++++|+|+.++..|+.|+...+.  ...+.++|......        ..   +||+|+.+|+...             
T Consensus       147 ~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--------~~---~fD~vi~NPPy~~~~~~~~~~~~~~~  213 (328)
T d2f8la1         147 VHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLL--------VD---PVDVVISDLPVGYYPDDENAKTFELC  213 (328)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCC--------CC---CEEEEEEECCCSEESCHHHHTTSTTC
T ss_pred             ceEEEecccHHHHHHHHHHHHHhhh--hhhhhccccccccc--------cc---cccccccCCCCCCCccchhhhhcchh
Confidence            3699999999999999999988875  46788888754311        35   8999999997531             


Q ss_pred             --------hHHHHHHHhhcccCCeEEEE
Q 044253           79 --------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 --------~~~~~~~~~~lL~~gG~ii~   98 (139)
                              +.-+++.+.++|++||++++
T Consensus       214 ~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         214 REEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             CSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccCcchHHHHHHHHHHHhcCCCCceEE
Confidence                    22357888899999997643

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=0.00032  Score=54.36  Aligned_cols=83  Identities=12%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcC-------C-CCcEEE-EeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCC--c
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVE-------V-DLKINL-MESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHK--D   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g-------~-~~~i~~-~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~--~   77 (139)
                      .++|++||+++.+++.|+++.+..+       . ...+.+ ..++....  ....      -.   .+|+|++....  .
T Consensus       240 ~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~------~~---~adVV~inn~~f~~  310 (406)
T d1u2za_         240 CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL------IP---QCDVILVNNFLFDE  310 (406)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH------GG---GCSEEEECCTTCCH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc------cc---cceEEEEecccCch
Confidence            4589999999999999999877542       2 122333 34444321  1211      24   68999997532  3


Q ss_pred             chHHHHHHHhhcccCCeEEEEeCCC
Q 044253           78 NYRNYRETLMTLFKVGGIVIYDNTL  102 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~~~~  102 (139)
                      .....+..+.+.|||||.||+.+.+
T Consensus       311 ~l~~~L~ei~r~LKPGGrIVs~~~~  335 (406)
T d1u2za_         311 DLNKKVEKILQTAKVGCKIISLKSL  335 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             HHHHHHHHHHHhcCCCcEEEEeccc
Confidence            4456788888999999999986543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.30  E-value=0.00052  Score=49.59  Aligned_cols=86  Identities=12%  Similarity=0.084  Sum_probs=68.8

Q ss_pred             chhhhh--hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH
Q 044253            4 NLESTF--FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN   81 (139)
Q Consensus         4 ~~~~~~--~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~   81 (139)
                      |++.|+  ...+++.+|.+..-+...+.-....|+. +++++++.+.++......    .+   +||+|.+-+-. ....
T Consensus        85 Gi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~----~~---~~D~v~sRAva-~l~~  155 (239)
T d1xdza_          85 SLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDV----RE---SYDIVTARAVA-RLSV  155 (239)
T ss_dssp             HHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTT----TT---CEEEEEEECCS-CHHH
T ss_pred             HHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccc----cc---cceEEEEhhhh-CHHH
Confidence            344444  4678999999999999999999999995 799999999876322110    24   89999998754 5677


Q ss_pred             HHHHHhhcccCCeEEEE
Q 044253           82 YRETLMTLFKVGGIVIY   98 (139)
Q Consensus        82 ~~~~~~~lL~~gG~ii~   98 (139)
                      +++.+.+++++||.+++
T Consensus       156 ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         156 LSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             HHHHHGGGEEEEEEEEE
T ss_pred             HHHHHhhhcccCCEEEE
Confidence            89999999999999985

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.16  E-value=0.00019  Score=50.84  Aligned_cols=50  Identities=12%  Similarity=0.218  Sum_probs=39.5

Q ss_pred             EEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----------ch-------HHHHHHHhhcccCCeEEEE
Q 044253           41 NLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----------NY-------RNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        41 ~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----------~~-------~~~~~~~~~lL~~gG~ii~   98 (139)
                      ++++||+++.++.+.     ++   ++|+||+||+..          .+       ..++..+.+.|++||.+++
T Consensus         6 ~i~~gDcle~l~~lp-----d~---sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~   72 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE-----NK---SVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYI   72 (256)
T ss_dssp             SEEECCHHHHHHHSC-----TT---CEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc-----CC---CcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccc
Confidence            589999999999875     46   899999999752          11       2356678889999998875

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.06  E-value=0.0004  Score=49.75  Aligned_cols=53  Identities=11%  Similarity=0.133  Sum_probs=41.7

Q ss_pred             cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----------ch----HHHHHHHhhcccCCeEEEEe
Q 044253           39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----------NY----RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----------~~----~~~~~~~~~lL~~gG~ii~~   99 (139)
                      +-.++.||+++.++.+.     ++   ++|+||+||+..          .|    ..+++.+.++|+++|.+++.
T Consensus         4 ~~~~~~~D~le~l~~l~-----d~---SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLP-----DD---SVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEEECCHHHHHHTSC-----TT---CEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEechHHHHHhhCc-----CC---CccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            45688899999999885     46   899999999753          23    33456778999999999874

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.04  E-value=0.00047  Score=50.09  Aligned_cols=54  Identities=11%  Similarity=0.148  Sum_probs=42.3

Q ss_pred             CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------h----HHHHHHHhhcccCCeEEEEe
Q 044253           38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------Y----RNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------~----~~~~~~~~~lL~~gG~ii~~   99 (139)
                      +.-++++||+++.++.+.     ++   ++|+|++||++..             |    ...+..+.++|+++|.+++.
T Consensus        11 ~~~~l~~GD~le~l~~l~-----~~---sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          11 SNGSMYIGDSLELLESFP-----EE---SISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             SSEEEEESCHHHHGGGSC-----SS---CEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEehhHHHHHhhCc-----cC---CCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            346999999999998874     46   8999999997521             1    23466777899999999874

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.60  E-value=0.0013  Score=50.65  Aligned_cols=76  Identities=11%  Similarity=0.050  Sum_probs=59.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------   78 (139)
                      ..++++|+++.+...|+-|+-..|.. +...+.++|....-   .     ..   +||+|+.+||...            
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~---~-----~~---~fD~Ii~NPPfg~~~~~~~~~~~~~  268 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE---P-----ST---LVDVILANPPFGTRPAGSVDINRPD  268 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC---C-----SS---CEEEEEECCCSSCCCTTCCCCCCTT
T ss_pred             hhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh---c-----cc---ccceEEecCCCCCCccccchhhhhh
Confidence            45899999999999999999988874 45778888886431   1     35   8999999986521            


Q ss_pred             --------hHHHHHHHhhcccCCeEEEE
Q 044253           79 --------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 --------~~~~~~~~~~lL~~gG~ii~   98 (139)
                              +..++..+..+|++||.+++
T Consensus       269 ~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         269 FYVETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             SSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccHHHHHHHHHHHhcCCCCeEEE
Confidence                    23478888899999998653

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.34  E-value=0.00099  Score=46.13  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=26.2

Q ss_pred             ceeEEEEcCC-----CcchHHHHHHHhhcccCCeEEEEe
Q 044253           66 NFDYAFVDAH-----KDNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        66 ~fD~If~D~~-----~~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      +||+||+---     ...-..+++.+.+.|+|||++++-
T Consensus       132 ~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         132 PFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             CEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            7999998532     122356788899999999999975

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.96  E-value=0.011  Score=39.61  Aligned_cols=76  Identities=12%  Similarity=0.144  Sum_probs=51.6

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+.+|.+++.++.|++    .|...-+.....|..+.+.++.     +.   .||+||-....   ...++.+.+++
T Consensus        53 ~~~v~~~~~~~~k~~~a~~----~Ga~~~i~~~~~~~~~~i~~~t-----~g---g~D~vid~~G~---~~~~~~~~~~~  117 (174)
T d1f8fa2          53 ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT-----DG---GVNFALESTGS---PEILKQGVDAL  117 (174)
T ss_dssp             CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TS---CEEEEEECSCC---HHHHHHHHHTE
T ss_pred             cceeeeeccHHHHHHHHHH----cCCeEEEeCCCcCHHHHHHHHc-----CC---CCcEEEEcCCc---HHHHHHHHhcc
Confidence            3467888999999999876    3653223333345555555542     35   79998876543   44677888999


Q ss_pred             cCCeEEEEeCC
Q 044253           91 KVGGIVIYDNT  101 (139)
Q Consensus        91 ~~gG~ii~~~~  101 (139)
                      +++|.+++-..
T Consensus       118 ~~~G~i~~~G~  128 (174)
T d1f8fa2         118 GILGKIAVVGA  128 (174)
T ss_dssp             EEEEEEEECCC
T ss_pred             cCceEEEEEee
Confidence            99999987544

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.03  Score=35.12  Aligned_cols=68  Identities=12%  Similarity=0.021  Sum_probs=50.7

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      |.+|..||=++...+..+..++..|+.  +.....++.+.+..+.     +.   +||+|++|-..+.  -.++++.+.+
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~--v~~~a~~~~~al~~~~-----~~---~~dliilD~~mp~~~G~e~~~~ir~   70 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYE--VAGEATNGREAVEKYK-----EL---KPDIVTMDITMPEMNGIDAIKEIMK   70 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH-----HH---CCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHH-----hc---cCCEEEEecCCCCCCHHHHHHHHHH
Confidence            457899999999999999999998863  4445678888887664     35   8999999975443  3345555543

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.017  Score=45.40  Aligned_cols=77  Identities=5%  Similarity=0.000  Sum_probs=54.8

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCc----EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----------
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLK----INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----------   78 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~----i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----------   78 (139)
                      .++++|+++.+...|+-|+-..|....    -.+..++....-...      ..   +||+|+.+||...          
T Consensus       208 ~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~------~~---kfD~Ii~NPPfg~~~~~~~~~~~  278 (524)
T d2ar0a1         208 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN------LP---KAHIVATNPPFGSAAGTNITRTF  278 (524)
T ss_dssp             SEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT------SC---CEEEEEECCCCTTCSSCCCCSCC
T ss_pred             hhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhcccc------cc---cceeEEecCCccccccccchhhh
Confidence            589999999999999999987776322    245555554321111      35   7999999986421          


Q ss_pred             -------hHHHHHHHhhcccCCeEEEE
Q 044253           79 -------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 -------~~~~~~~~~~lL~~gG~ii~   98 (139)
                             ..-++..++..|++||++.+
T Consensus       279 ~~~~~~~~~~Fi~~~l~~Lk~gGr~ai  305 (524)
T d2ar0a1         279 VHPTSNKQLCFMQHIIETLHPGGRAAV  305 (524)
T ss_dssp             SSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccccHHHHHHHHHhccccCcEEE
Confidence                   23478888999999998654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.51  E-value=0.021  Score=37.64  Aligned_cols=75  Identities=15%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+.+|+++|.+++.++.+++    .|...-+.....|..+.+...      ..   .+|.++.+...   ...++...+.
T Consensus        50 ~G~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~~~------~~---g~~~~i~~~~~---~~~~~~~~~~  113 (166)
T d1llua2          50 MGLHVAAIDIDDAKLELARK----LGASLTVNARQEDPVEAIQRD------IG---GAHGVLVTAVS---NSAFGQAIGM  113 (166)
T ss_dssp             TTCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------HS---SEEEEEECCSC---HHHHHHHHTT
T ss_pred             cCCccceecchhhHHHhhhc----cCccccccccchhHHHHHHHh------hc---CCccccccccc---chHHHHHHHH
Confidence            46799999999999988875    565322222333444443332      23   46666665543   3457788899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.+++-.
T Consensus       114 l~~~G~iv~~G  124 (166)
T d1llua2         114 ARRGGTIALVG  124 (166)
T ss_dssp             EEEEEEEEECC
T ss_pred             hcCCcEEEEEE
Confidence            99999998744

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.03  Score=37.09  Aligned_cols=80  Identities=9%  Similarity=0.040  Sum_probs=51.0

Q ss_pred             hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      .++ +|+++|.+++.++.|++    .|....+..-..+..+....+....  ..   .+|+||--.+.   ...++.+.+
T Consensus        49 ~G~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~~~--g~---g~Dvvid~~G~---~~~~~~a~~  116 (171)
T d1pl8a2          49 MGAAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEGQL--GC---KPEVTIECTGA---EASIQAGIY  116 (171)
T ss_dssp             TTCSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHHHH--TS---CCSEEEECSCC---HHHHHHHHH
T ss_pred             cCCceEEeccCCHHHHHHHHH----hCCcccccccccccccccccccccC--CC---CceEEEeccCC---chhHHHHHH
Confidence            344 79999999999999875    4653222222234333333222111  24   79998765543   446788899


Q ss_pred             cccCCeEEEEeCC
Q 044253           89 LFKVGGIVIYDNT  101 (139)
Q Consensus        89 lL~~gG~ii~~~~  101 (139)
                      .+++||.+++-..
T Consensus       117 ~~~~gG~iv~~G~  129 (171)
T d1pl8a2         117 ATRSGGTLVLVGL  129 (171)
T ss_dssp             HSCTTCEEEECSC
T ss_pred             HhcCCCEEEEEec
Confidence            9999999997543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.27  E-value=0.015  Score=39.05  Aligned_cols=80  Identities=13%  Similarity=0.068  Sum_probs=49.6

Q ss_pred             hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      ++ +|+++|.+++.++.|++    .|...-+.....+..+..+......+ ..   .+|+||-..+.   ...++.+.+.
T Consensus        52 Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~~-~~---g~Dvvid~vG~---~~~~~~a~~~  120 (182)
T d1vj0a2          52 GAENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDITH-GR---GADFILEATGD---SRALLEGSEL  120 (182)
T ss_dssp             TBSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHTT-TS---CEEEEEECSSC---TTHHHHHHHH
T ss_pred             cccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhhC-CC---CceEEeecCCc---hhHHHHHHHH
Confidence            54 79999999999998875    46432222233444444332221111 24   69998855432   2346778899


Q ss_pred             ccCCeEEEEeCC
Q 044253           90 FKVGGIVIYDNT  101 (139)
Q Consensus        90 L~~gG~ii~~~~  101 (139)
                      |++||.+++-.+
T Consensus       121 l~~~G~iv~~G~  132 (182)
T d1vj0a2         121 LRRGGFYSVAGV  132 (182)
T ss_dssp             EEEEEEEEECCC
T ss_pred             hcCCCEEEEEee
Confidence            999999986543

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.27  E-value=0.11  Score=32.51  Aligned_cols=65  Identities=11%  Similarity=0.083  Sum_probs=48.8

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      +|..||=++...+..++.++..|+.  +. ...++.+.+..+.     ..   +||+|++|...+.  -..+++.+..
T Consensus         3 rILiVdDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~---~~dlillD~~mp~~~g~~~~~~lr~   69 (122)
T d1kgsa2           3 RVLVVEDERDLADLITEALKKEMFT--VD-VCYDGEEGMYMAL-----NE---PFDVVILDIMLPVHDGWEILKSMRE   69 (122)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EEcchHHHHHHHH-----hh---CccccccccccccchhHHHHHHHHh
Confidence            6889999999999999999999873  44 5678888877664     46   8999999974332  3345555543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.04  E-value=0.023  Score=37.28  Aligned_cols=75  Identities=19%  Similarity=0.192  Sum_probs=50.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|+.++.+++.++.+++    .|...-+.....|....+...      ..   .+|.++.+...   ...++...+.
T Consensus        50 ~g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~------~~---~~~~~v~~~~~---~~~~~~a~~~  113 (168)
T d1rjwa2          50 MGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------VG---GVHAAVVTAVS---KPAFQSAYNS  113 (168)
T ss_dssp             TTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------HS---SEEEEEESSCC---HHHHHHHHHH
T ss_pred             CCCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccc------cC---CCceEEeecCC---HHHHHHHHHH
Confidence            46789999999999988865    565322222234555555443      23   46666666642   4567888999


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      |+++|.+++-.
T Consensus       114 l~~~G~i~~~g  124 (168)
T d1rjwa2         114 IRRGGACVLVG  124 (168)
T ss_dssp             EEEEEEEEECC
T ss_pred             hccCCceEecc
Confidence            99999998754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.029  Score=37.13  Aligned_cols=76  Identities=16%  Similarity=0.041  Sum_probs=47.0

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+++|+++|.+++.++.|++    .|.. . .+-..+-.+.....      .+   .||+|+.-.... ....+....+
T Consensus        49 ~~G~~vi~~~~~~~k~~~a~~----lGa~-~-~i~~~~~~~~~~~~------~~---~~d~vi~~~~~~-~~~~~~~~~~  112 (168)
T d1piwa2          49 AMGAETYVISRSSRKREDAMK----MGAD-H-YIATLEEGDWGEKY------FD---TFDLIVVCASSL-TDIDFNIMPK  112 (168)
T ss_dssp             HHTCEEEEEESSSTTHHHHHH----HTCS-E-EEEGGGTSCHHHHS------CS---CEEEEEECCSCS-TTCCTTTGGG
T ss_pred             hccccccccccchhHHHHhhc----cCCc-E-EeeccchHHHHHhh------hc---ccceEEEEecCC-ccchHHHHHH
Confidence            357899999999999998876    4643 1 22211112222222      35   799988643221 1112456789


Q ss_pred             cccCCeEEEEeC
Q 044253           89 LFKVGGIVIYDN  100 (139)
Q Consensus        89 lL~~gG~ii~~~  100 (139)
                      .|+++|.+++-.
T Consensus       113 ~l~~~G~iv~~G  124 (168)
T d1piwa2         113 AMKVGGRIVSIS  124 (168)
T ss_dssp             GEEEEEEEEECC
T ss_pred             HhhccceEEEec
Confidence            999999998754

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=94.92  E-value=0.13  Score=32.01  Aligned_cols=75  Identities=13%  Similarity=0.079  Sum_probs=52.6

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..||=++......++.++..|+.  + ....++.+.+..+.     ..   +||+|++|...+  +-.++++.+...
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~~--v-~~a~~g~eal~~~~-----~~---~~dlillD~~mP~~~G~el~~~lr~~   70 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGYQ--T-FQAANGLQALDIVT-----KE---RPDLVLLDMKIPGMDGIEILKRMKVI   70 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HH---CCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCE--E-EEeCCHHHHHHHHH-----hC---CCCEEEEeccCCCCCHHHHHHHHHHh
Confidence            36889999999999999999999873  3 35678888876654     35   899999997433  334556655443


Q ss_pred             ccCCe-EEEE
Q 044253           90 FKVGG-IVIY   98 (139)
Q Consensus        90 L~~gG-~ii~   98 (139)
                       .++- ++++
T Consensus        71 -~~~~pvi~l   79 (119)
T d1peya_          71 -DENIRVIIM   79 (119)
T ss_dssp             -CTTCEEEEE
T ss_pred             -CCCCcEEEE
Confidence             3443 4444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.91  E-value=0.015  Score=39.10  Aligned_cols=76  Identities=13%  Similarity=0.054  Sum_probs=49.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|.+++.++.|++    .|...-+.....+..+.+.++..    ..   .+|+||--....   ..++.+.+.++
T Consensus        53 ~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~~v~~~t~----g~---G~D~vid~~g~~---~~~~~a~~~~~  118 (174)
T d1jqba2          53 GRIIGVGSRPICVEAAKF----YGATDILNYKNGHIEDQVMKLTN----GK---GVDRVIMAGGGS---ETLSQAVKMVK  118 (174)
T ss_dssp             SCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHHHHHHHTT----TS---CEEEEEECSSCT---THHHHHHHHEE
T ss_pred             cccccccchhhhHHHHHh----hCccccccccchhHHHHHHHHhh----cc---CcceEEEccCCH---HHHHHHHHHHh
Confidence            379999999999999975    45432222333444444444321    24   699987665432   34677889999


Q ss_pred             CCeEEEEeCC
Q 044253           92 VGGIVIYDNT  101 (139)
Q Consensus        92 ~gG~ii~~~~  101 (139)
                      ++|.+++-..
T Consensus       119 ~~G~iv~~G~  128 (174)
T d1jqba2         119 PGGIISNINY  128 (174)
T ss_dssp             EEEEEEECCC
T ss_pred             cCCEEEEEee
Confidence            9999987543

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=94.86  E-value=0.18  Score=31.39  Aligned_cols=78  Identities=5%  Similarity=0.049  Sum_probs=53.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l   89 (139)
                      -+|..||-++......++.++..|+.  +. ...++.+.+..+..    ..   +||+|++|...+.  -.++++.+...
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~----~~---~~dliilD~~lp~~~G~el~~~ir~~   72 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGAE--VT-VHPSGSAFFQHRSQ----LS---TCDLLIVSDQLVDLSIFSLLDIVKEQ   72 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHTGGG----GG---SCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCC--eE-EECCHHHHHHHHHh----cC---CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence            36889999999999999999999872  33 45567777765532    24   7999999975433  34556666544


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      -..-.++++.
T Consensus        73 ~~~~pii~lt   82 (118)
T d2b4aa1          73 TKQPSVLILT   82 (118)
T ss_dssp             SSCCEEEEEE
T ss_pred             CCCCcEEEEE
Confidence            3334455553

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=94.77  E-value=0.24  Score=30.91  Aligned_cols=76  Identities=13%  Similarity=0.010  Sum_probs=54.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||=++...+..++.++..|+  .+. ...++.+.+..+.     +.   +||+|++|-..+  +-.++++.+..
T Consensus         3 ~~~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~---~~dlvi~D~~mp~~~G~e~~~~lr~   71 (123)
T d1dbwa_           3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DV---RNGVLVTDLRMPDMSGVELLRNLGD   71 (123)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GC---CSEEEEEECCSTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----hc---CCcEEEEeccCccccchHHHHHHHh
Confidence            46899999999999999999999997  354 4677888876653     45   899999997433  33456666654


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      . .+...+++
T Consensus        72 ~-~~~~~iI~   80 (123)
T d1dbwa_          72 L-KINIPSIV   80 (123)
T ss_dssp             T-TCCCCEEE
T ss_pred             c-CCCCeEEE
Confidence            3 34444443

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.73  E-value=0.16  Score=31.58  Aligned_cols=77  Identities=13%  Similarity=-0.029  Sum_probs=53.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l   89 (139)
                      .+|..||=++...+..+..++..|+.  +. ...++.+.+..+.     ..   +||+|++|-..+.  -...+..+...
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~---~~dlillD~~mp~~~G~~~~~~~r~~   71 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGYD--VI-TASDGEEALKKAE-----TE---KPDLIVLDVMLPKLDGIEVCKQLRQQ   71 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cc---cccEEEecccccCCCCchhhhhhhcc
Confidence            47899999999999999999999973  33 5677888877664     35   8999999974433  23344544433


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      -..-.++++.
T Consensus        72 ~~~~~ii~lt   81 (121)
T d1mvoa_          72 KLMFPILMLT   81 (121)
T ss_dssp             TCCCCEEEEE
T ss_pred             CCCCEEEEEE
Confidence            2223344443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.64  E-value=0.028  Score=37.15  Aligned_cols=76  Identities=14%  Similarity=0.096  Sum_probs=48.3

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF   90 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL   90 (139)
                      ..+|+.+|.+++..+.+++    .|....+..-..|..+.+.+..   + ..   .||+||-...   -...++.+.+.+
T Consensus        53 ~~~V~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~---~-~~---~~d~vid~~g---~~~~~~~a~~~l  118 (170)
T d1jvba2          53 GATIIGVDVREEAVEAAKR----AGADYVINASMQDPLAEIRRIT---E-SK---GVDAVIDLNN---SEKTLSVYPKAL  118 (170)
T ss_dssp             CCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT---T-TS---CEEEEEESCC---CHHHHTTGGGGE
T ss_pred             cccccccccchhhHHHHHH----cCCceeeccCCcCHHHHHHHHh---h-cc---cchhhhcccc---cchHHHhhhhhc
Confidence            3589999999999888876    3643212222233333333221   1 24   7998876553   244567888999


Q ss_pred             cCCeEEEEeC
Q 044253           91 KVGGIVIYDN  100 (139)
Q Consensus        91 ~~gG~ii~~~  100 (139)
                      +++|.+++-.
T Consensus       119 ~~~G~iv~~G  128 (170)
T d1jvba2         119 AKQGKYVMVG  128 (170)
T ss_dssp             EEEEEEEECC
T ss_pred             ccCCEEEEec
Confidence            9999998754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.63  E-value=0.015  Score=41.78  Aligned_cols=81  Identities=7%  Similarity=-0.013  Sum_probs=57.9

Q ss_pred             cceeEEeCCccHHHHH---HHHHHHcCCCCcEEEEeCChHHHHH--hhHHhhhcccCCCceeEEEEcCCCc---------
Q 044253           12 YFIVAIDVSRESSETG---LPIIKKVEVDLKINLMESRALPALD--QLLKDEKIHFFFENFDYAFVDAHKD---------   77 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~A---r~n~~~~g~~~~i~~~~~da~~~l~--~~~~~~~~~~~~~~fD~If~D~~~~---------   77 (139)
                      .++++.|+++++++.|   ++|++..|+.+.+++.+.|+++.-+  ....    ..   ..++|+++|++.         
T Consensus       115 ~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~----~~---~~GlIVtNPPYGERl~~~~~~  187 (249)
T d1o9ga_         115 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLA----GS---APDVVLTDLPYGERTHWEGQV  187 (249)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHT----TC---CCSEEEEECCGGGSSSSSSCC
T ss_pred             CCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccC----CC---CCCEEEeCCCccccccccccc
Confidence            4689999999999999   5799999999999999999875421  1110    24   689999998643         


Q ss_pred             ---chHHHHHHHhhcccCCeEEEEe
Q 044253           78 ---NYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ---~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                         .|..+...+...+.....+++.
T Consensus       188 ~~~~~~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         188 PGQPVAGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hHHHHHHHHHHHHccCCCCcEEEEe
Confidence               1344555566667655555553

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.051  Score=36.01  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=49.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++..+.+++    .|...-+.....|..+.+.....    ..   .+|+||-...    ...++...+.
T Consensus        52 ~G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t~----~~---g~d~v~d~~g----~~~~~~~~~~  116 (174)
T d1yb5a2          52 YGLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVG----EK---GIDIIIEMLA----NVNLSKDLSL  116 (174)
T ss_dssp             TTCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHHC----TT---CEEEEEESCH----HHHHHHHHHH
T ss_pred             cCcccccccccccccccccc----cCcccccccccccHHHHhhhhhc----cC---CceEEeeccc----HHHHHHHHhc
Confidence            46789999999888777764    57643333334455555443321    34   7998876443    2467788899


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+++|.++.-
T Consensus       117 l~~~G~iv~~  126 (174)
T d1yb5a2         117 LSHGGRVIVV  126 (174)
T ss_dssp             EEEEEEEEEC
T ss_pred             cCCCCEEEEE
Confidence            9999999863

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.45  E-value=0.026  Score=37.12  Aligned_cols=74  Identities=9%  Similarity=0.025  Sum_probs=49.8

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY   82 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~   82 (139)
                      ||......+.+|+++|++++.++.|++    .|..+.   ...+.    ..+       .   ..|+||+-.+.......
T Consensus        15 lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~~---~~~~~----~~~-------~---~~DiIilavp~~~~~~v   73 (165)
T d2f1ka2          15 LAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVDE---AGQDL----SLL-------Q---TAKIIFLCTPIQLILPT   73 (165)
T ss_dssp             HHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCSE---EESCG----GGG-------T---TCSEEEECSCHHHHHHH
T ss_pred             HHHHHHHCCCEEEEEECCchHHHHHHH----hhccce---eeeec----ccc-------c---ccccccccCcHhhhhhh
Confidence            344555668899999999998887764    343221   11222    111       3   68999987766667778


Q ss_pred             HHHHhhcccCCeEEE
Q 044253           83 RETLMTLFKVGGIVI   97 (139)
Q Consensus        83 ~~~~~~lL~~gG~ii   97 (139)
                      ++.+.+.++++.+++
T Consensus        74 l~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          74 LEKLIPHLSPTAIVT   88 (165)
T ss_dssp             HHHHGGGSCTTCEEE
T ss_pred             hhhhhhhccccccee
Confidence            888888888888775

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.44  E-value=0.18  Score=32.08  Aligned_cols=74  Identities=9%  Similarity=0.053  Sum_probs=51.9

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..||=++...+..++.++..|+.  +. ...++.+.+..+.     ..   +||+|++|-..+  +-..+++.+... 
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~eAl~~l~-----~~---~~dlvilD~~mp~~~G~e~~~~lr~~-   69 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGIK--VE-SAERGKEAYKLLS-----EK---HFNVVLLDLLLPDVNGLEILKWIKER-   69 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTCE--EE-EESSHHHHHHHHH-----HS---CCSEEEEESBCSSSBHHHHHHHHHHH-
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHhh-----cc---ccccchHHHhhhhhhHHHHHHHHHHh-
Confidence            5788999999999999999999973  44 5678888877664     35   899999996332  334555555443 


Q ss_pred             cCCe-EEEE
Q 044253           91 KVGG-IVIY   98 (139)
Q Consensus        91 ~~gG-~ii~   98 (139)
                      .++- +|++
T Consensus        70 ~~~~piI~l   78 (137)
T d1ny5a1          70 SPETEVIVI   78 (137)
T ss_dssp             CTTSEEEEE
T ss_pred             CCCCCEEEE
Confidence            3333 3443

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.24  Score=31.14  Aligned_cols=71  Identities=11%  Similarity=0.142  Sum_probs=47.7

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      +|..||=++......++.++..|+. .++ ...|+.+.+..+........   +||+|++|...+.  -.+..+.+.+
T Consensus         3 rVLvVDD~~~~~~~l~~~L~~~g~~-~v~-~a~~g~eAl~~l~~~~~~~~---~~dlillD~~mP~~dG~el~~~ir~   75 (128)
T d2r25b1           3 KILVVEDNHVNQEVIKRMLNLEGIE-NIE-LACDGQEAFDKVKELTSKGE---NYNMIFMDVQMPKVDGLLSTKMIRR   75 (128)
T ss_dssp             CEEEECSCHHHHHHHHHHHHHTTCC-CEE-EESSHHHHHHHHHHHHHHTC---CCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCe-EEE-EEcChHHHHHHHHhhhhccC---CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            7889999999999999999999974 344 34677766654421100035   8999999974433  2345555543

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.33  E-value=0.041  Score=35.23  Aligned_cols=57  Identities=12%  Similarity=0.135  Sum_probs=45.9

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      +.+.+|..||=++......++.++..|+.  +. ...++.+.+..+      ..   .||+|++|-..+
T Consensus         5 ~~g~rILvVDD~~~~~~~l~~~L~~~G~~--v~-~a~~g~eal~~l------~~---~~dlillD~~mP   61 (134)
T d1dcfa_           5 FTGLKVLVMDENGVSRMVTKGLLVHLGCE--VT-TVSSNEECLRVV------SH---EHKVVFMDVCMP   61 (134)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHC------CT---TCSEEEEECCSS
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHh------hc---CCCeEEEEeccC
Confidence            35779999999999999999999999973  43 567888888654      45   899999997543

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.32  Score=30.08  Aligned_cols=66  Identities=12%  Similarity=-0.102  Sum_probs=48.6

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL   89 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l   89 (139)
                      +|..||-++......++.++..|+.  + ....++.+.+..+.     ..   .||+|++|-..+.  -.++++.+...
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~G~~--v-~~a~~g~eal~~l~-----~~---~~dliilD~~mP~~~G~e~~~~i~~~   69 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDAGHQ--V-DDAEDAKEADYYLN-----EH---IPDIAIVDLGLPDEDGLSLIRRWRSN   69 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HS---CCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHH-----hc---ccceeehhccCCCchhHHHHHHHHhc
Confidence            5788999999999999999999873  3 35677888776654     35   8999999975332  34455655543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.20  E-value=0.042  Score=37.31  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=47.0

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------------   78 (139)
                      ..++++|+++.++..          ..+..++++|......        ..   .||+|+.+++...             
T Consensus        45 ~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~--------~~---~fd~ii~npP~~~~~~~~~~~~~~~~  103 (223)
T d2ih2a1          45 YRFVGVEIDPKALDL----------PPWAEGILADFLLWEP--------GE---AFDLILGNPPYGIVGEASKYPIHVFK  103 (223)
T ss_dssp             SEEEEEESCTTTCCC----------CTTEEEEESCGGGCCC--------SS---CEEEEEECCCCCCBSCTTTCSBCCCH
T ss_pred             ceEEeeecCHHHHhh----------cccceeeeeehhcccc--------cc---ccceecccCccccccccccccchhhh
Confidence            469999999986533          3356888998875421        35   8999999975311             


Q ss_pred             -------------------hHHHHHHHhhcccCCeEEEE
Q 044253           79 -------------------YRNYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        79 -------------------~~~~~~~~~~lL~~gG~ii~   98 (139)
                                         +..+++.++++|++||.+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1         104 AVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             HHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence                               23456778899999999754

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.064  Score=38.93  Aligned_cols=67  Identities=13%  Similarity=0.039  Sum_probs=50.0

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      +..+.+|++||+|+.+++..++.+......++++++.+|+.+.  .+       .   .++.|+.+.++.-...++..+
T Consensus        40 l~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~--~~-------~---~~~~vV~NLPY~Iss~il~~~  106 (278)
T d1zq9a1          40 LEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT--DL-------P---FFDTCVANLPYQISSPFVFKL  106 (278)
T ss_dssp             HHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS--CC-------C---CCSEEEEECCGGGHHHHHHHH
T ss_pred             HhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh--hh-------h---hhhhhhcchHHHHHHHHHHHH
Confidence            3456799999999999999999998776667899999999865  11       3   466788887764334444443

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=94.04  E-value=0.31  Score=30.41  Aligned_cols=75  Identities=12%  Similarity=0.032  Sum_probs=52.3

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..||=|+......++.++..|+.  + ....++.+.+..+.     ..   +||+|++|...+  +-..+++.+...-
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~~al~~~~-----~~---~~dliilD~~mp~~~G~~~~~~i~~~~   72 (128)
T d1yioa2           4 TVFVVDDDMSVREGLRNLLRSAGFE--V-ETFDCASTFLEHRR-----PE---QHGCLVLDMRMPGMSGIELQEQLTAIS   72 (128)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTCE--E-EEESSHHHHHHHCC-----TT---SCEEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCC--c-cccccHHHHHHHHH-----hc---CCCEeehhhhcccchhHHHHHHHHhhC
Confidence            6889999999999999999999873  4 45567888877653     35   899999997433  3344566555433


Q ss_pred             cCCeEEEE
Q 044253           91 KVGGIVIY   98 (139)
Q Consensus        91 ~~gG~ii~   98 (139)
                      ..--++++
T Consensus        73 ~~~~ii~l   80 (128)
T d1yioa2          73 DGIPIVFI   80 (128)
T ss_dssp             CCCCEEEE
T ss_pred             CCCeEEEE
Confidence            33334443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.02  E-value=0.047  Score=37.28  Aligned_cols=81  Identities=11%  Similarity=0.050  Sum_probs=52.2

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------------
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------   77 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------   77 (139)
                      ...+|+++|.+++.++.|++.    |...-+.....|..+.+.++..    ..   .+|.+|-.....            
T Consensus        49 ga~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~i~~~t~----g~---g~D~vid~vG~~~~~~~~~~~~~~  117 (195)
T d1kola2          49 GAAVVIVGDLNPARLAHAKAQ----GFEIADLSLDTPLHEQIAALLG----EP---EVDCAVDAVGFEARGHGHEGAKHE  117 (195)
T ss_dssp             TCSEEEEEESCHHHHHHHHHT----TCEEEETTSSSCHHHHHHHHHS----SS---CEEEEEECCCTTCBCSSTTGGGSB
T ss_pred             cccceeeecccchhhHhhhhc----cccEEEeCCCcCHHHHHHHHhC----CC---CcEEEEECccccccCCcccceeec
Confidence            345899999999999999754    5421111123455554444431    34   699988543211            


Q ss_pred             chHHHHHHHhhcccCCeEEEEeCC
Q 044253           78 NYRNYRETLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        78 ~~~~~~~~~~~lL~~gG~ii~~~~  101 (139)
                      .....++.+.+.+++||.+++-.+
T Consensus       118 ~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2         118 APATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             CTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CcHHHHHHHHHHHhcCCEEEEeee
Confidence            124578899999999999997665

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.90  E-value=0.059  Score=35.64  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~   87 (139)
                      ...+|+++|.+++.++.+++    .|..   +++.  .|..+...+..   + ..   .+|+||-....   ...++...
T Consensus        56 g~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~~~~~~~~~~---~-~~---g~d~vid~~g~---~~~~~~a~  118 (172)
T d1h2ba2          56 TPATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELT---R-GR---GVNVAMDFVGS---QATVDYTP  118 (172)
T ss_dssp             CCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHT---T-TC---CEEEEEESSCC---HHHHHHGG
T ss_pred             cCcccccccchhHHHHHHhh----cccc---eeecCcccHHHHHHHhh---C-CC---CceEEEEecCc---chHHHHHH
Confidence            34578999999998888875    3432   2232  23322222221   1 24   69998876643   33578889


Q ss_pred             hcccCCeEEEEeC
Q 044253           88 TLFKVGGIVIYDN  100 (139)
Q Consensus        88 ~lL~~gG~ii~~~  100 (139)
                      +.|+++|.+++-.
T Consensus       119 ~~l~~~G~iv~~G  131 (172)
T d1h2ba2         119 YLLGRMGRLIIVG  131 (172)
T ss_dssp             GGEEEEEEEEECC
T ss_pred             HHHhCCCEEEEEe
Confidence            9999999999744

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.09  Score=34.68  Aligned_cols=78  Identities=9%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.|++..+.+++    .|...-+.....|..+.+.++..    ..   .+|+|+--... .   .++.....
T Consensus        52 ~Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~t~----g~---g~d~v~d~~g~-~---~~~~~~~~  116 (179)
T d1qora2          52 LGAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEITG----GK---KVRVVYDSVGR-D---TWERSLDC  116 (179)
T ss_dssp             HTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TC---CEEEEEECSCG-G---GHHHHHHT
T ss_pred             hCCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHHhC----CC---CeEEEEeCccH-H---HHHHHHHH
Confidence            57899999999999988875    46543333344566655554421    34   79976544332 2   45678899


Q ss_pred             ccCCeEEEEeCCC
Q 044253           90 FKVGGIVIYDNTL  102 (139)
Q Consensus        90 L~~gG~ii~~~~~  102 (139)
                      ++++|.+++-...
T Consensus       117 l~~~G~~v~~g~~  129 (179)
T d1qora2         117 LQRRGLMVSFGNS  129 (179)
T ss_dssp             EEEEEEEEECCCT
T ss_pred             HhcCCeeeecccc
Confidence            9999998764433

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.69  E-value=0.38  Score=29.59  Aligned_cols=75  Identities=15%  Similarity=0.033  Sum_probs=52.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~lL   90 (139)
                      +|..||-++...+..+..++..|+.  +. ...++.+.+..+.     ..   +||+|++|...+.  -...++.+.+ .
T Consensus         2 rILiVdDd~~~~~~l~~~L~~~g~~--v~-~a~~~~eal~~~~-----~~---~~dlillD~~mp~~~G~~~~~~i~~-~   69 (117)
T d2a9pa1           2 KILIVDDEKPISDIIKFNMTKEGYE--VV-TAFNGREALEQFE-----AE---QPDIIILDLMLPEIDGLEVAKTIRK-T   69 (117)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHT-T
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hc---CCCEEEeccccCCCCccHHHHHHHh-C
Confidence            6889999999999999999999873  43 5678888887664     35   8999999964332  2345555543 2


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      +.--++++.
T Consensus        70 ~~~pvI~lt   78 (117)
T d2a9pa1          70 SSVPILMLS   78 (117)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCCEEEEe
Confidence            333344443

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=93.68  E-value=0.34  Score=30.85  Aligned_cols=74  Identities=12%  Similarity=0.052  Sum_probs=52.2

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..||=++......+..++..|+.  +. ...++.+.+..+.     ..   +||+|++|-..+  +-..+++.+... 
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~-----~~---~~dlil~D~~mP~~~G~el~~~lr~~-   69 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAGFT--VS-SFASATEALAGLS-----AD---FAGIVISDIRMPGMDGLALFRKILAL-   69 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHTCC-----TT---CCSEEEEESCCSSSCHHHHHHHHHHH-
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--EE-EeCChHHHHHHHh-----cc---CcchHHHhhccCCCCHHHHHHHHHHh-
Confidence            4788999999999999999999873  43 4578888877663     35   899999996433  334566666543 


Q ss_pred             cCCe-EEEE
Q 044253           91 KVGG-IVIY   98 (139)
Q Consensus        91 ~~gG-~ii~   98 (139)
                      .++- +|++
T Consensus        70 ~~~~pvI~l   78 (140)
T d1qkka_          70 DPDLPMILV   78 (140)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCcEEEE
Confidence            3444 4444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.66  E-value=0.074  Score=34.95  Aligned_cols=84  Identities=12%  Similarity=0.059  Sum_probs=55.8

Q ss_pred             CchhhhhhhcceeEEeCCccHHHHHHHHHHHc--CCCC----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253            3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKV--EVDL----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK   76 (139)
Q Consensus         3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~--g~~~----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~   76 (139)
                      +|...+..+.+|+.+|++++.++.+++.-...  ....    .......|..+.+          .   ..|+|++-.+.
T Consensus        16 ~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----------~---~aD~iii~v~~   82 (184)
T d1bg6a2          16 FAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----------K---DADVILIVVPA   82 (184)
T ss_dssp             HHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----------T---TCSEEEECSCG
T ss_pred             HHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----------c---CCCEEEEEEch
Confidence            34556667889999999999888776542111  0000    1112234444432          3   68999998776


Q ss_pred             cchHHHHHHHhhcccCCeEEEEe
Q 044253           77 DNYRNYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        77 ~~~~~~~~~~~~lL~~gG~ii~~   99 (139)
                      ......++++.++|+++.+++..
T Consensus        83 ~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          83 IHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             GGHHHHHHHHGGGCCTTCEEEES
T ss_pred             hHHHHHHHHhhhccCCCCEEEEe
Confidence            67788899999999999987754

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.60  E-value=0.3  Score=30.32  Aligned_cols=72  Identities=14%  Similarity=-0.051  Sum_probs=49.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..||=++...+..++.++..|.. .+.-...|+.+.+..+.     ..   +||+|++|-..+  +-.++++.+....
T Consensus         3 rILivDD~~~~~~~l~~~L~~~~~~-~~v~~a~~g~~al~~~~-----~~---~~dlillD~~mP~~dG~e~~~~ir~~~   73 (123)
T d1dz3a_           3 KVCIADDNRELVSLLDEYISSQPDM-EVIGTAYNGQDCLQMLE-----EK---RPDILLLDIIMPHLDGLAVLERIRAGF   73 (123)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHH-----hc---CCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence            6888999999999999999876631 12223568888877654     35   799999997544  3345666665444


Q ss_pred             cCC
Q 044253           91 KVG   93 (139)
Q Consensus        91 ~~g   93 (139)
                      ...
T Consensus        74 ~~~   76 (123)
T d1dz3a_          74 EHQ   76 (123)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            333

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.55  E-value=0.015  Score=38.48  Aligned_cols=79  Identities=10%  Similarity=0.080  Sum_probs=50.3

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe----CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME----SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE   84 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~----~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~   84 (139)
                      .++++|+++|.+++.++.|++.    |..  ..+..    .+..+....+....  ..   .+|+||-....   ...++
T Consensus        48 ~~Ga~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~~--g~---g~D~vid~~g~---~~~~~  113 (170)
T d1e3ja2          48 AYGAFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSAI--GD---LPNVTIDCSGN---EKCIT  113 (170)
T ss_dssp             HTTCEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHHS--SS---CCSEEEECSCC---HHHHH
T ss_pred             hhcccccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhccc--cc---CCceeeecCCC---hHHHH
Confidence            3577999999999999999863    432  22222    22233333332111  24   69988765532   34577


Q ss_pred             HHhhcccCCeEEEEeCC
Q 044253           85 TLMTLFKVGGIVIYDNT  101 (139)
Q Consensus        85 ~~~~lL~~gG~ii~~~~  101 (139)
                      .+.+.++++|.+++-..
T Consensus       114 ~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2         114 IGINITRTGGTLMLVGM  130 (170)
T ss_dssp             HHHHHSCTTCEEEECSC
T ss_pred             HHHHHHhcCCceEEEec
Confidence            88899999999997543

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.089  Score=32.93  Aligned_cols=65  Identities=11%  Similarity=0.077  Sum_probs=47.7

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      +|..||-|+...+..++.++..|+.  +. ...++.+.+..+.     ..   +||+|++|...+.  -..+++.+..
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~---~~dlii~D~~mp~~~G~~~~~~~r~   70 (121)
T d1xhfa1           4 HILIVEDELVTRNTLKSIFEAEGYD--VF-EATDGAEMHQILS-----EY---DINLVIMDINLPGKNGLLLARELRE   70 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTCE--EE-EESSHHHHHHHHH-----HS---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--EE-EECChHHHHHHHH-----hc---CCCEEEeecccCCccCcHHHHHHHh
Confidence            6889999999999999999999873  33 5578888877664     35   8999999974332  2334444433

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.39  E-value=0.22  Score=31.06  Aligned_cols=75  Identities=9%  Similarity=-0.100  Sum_probs=52.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..||=++......++.++..|+.  +. ...++.+.+..+.     ..   +||+|++|-..+  +-..+++.+.+.
T Consensus         4 ~~ILIVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~a~~~l~-----~~---~~dlii~D~~mp~~~G~el~~~l~~~   72 (123)
T d1krwa_           4 GIVWVVDDDSSIRWVLERALAGAGLT--CT-TFENGNEVLAALA-----SK---TPDVLLSDIRMPGMDGLALLKQIKQR   72 (123)
T ss_dssp             CEEEEESSSHHHHHHHHHHHHHTTCE--EE-EESSSHHHHHHHT-----TC---CCSEEEECCSSSSSTTHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCE--EE-EeCCHHHHHHHHH-----hC---CCCEEEehhhcCCchHHHHHHHHHHh
Confidence            46889999999999999999999873  44 4667777776653     35   899999996433  334456665443


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                       .++-.+++
T Consensus        73 -~~~~piI~   80 (123)
T d1krwa_          73 -HPMLPVII   80 (123)
T ss_dssp             -SSSCCEEE
T ss_pred             -CCCCeEEE
Confidence             34444443

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=93.25  E-value=0.09  Score=32.84  Aligned_cols=65  Identities=11%  Similarity=0.029  Sum_probs=48.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      .+|..||=++...+..++.++..|+.  + ....|+.+.+..+.     +.   +||+|++|...+  +-.++.+.+.
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~~--v-~~a~~~~~al~~~~-----~~---~~dlil~D~~mp~~dG~el~~~ir   68 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGYE--T-LQTREGLSALSIAR-----EN---KPDLILMDIQLPEISGLEVTKWLK   68 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--E-EEESCHHHHHHHHH-----HH---CCSEEEEESBCSSSBHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHH-----hC---CCCEEEEEeccCCCcHHHHHHHHH
Confidence            36889999999999999999999973  3 35678888877654     35   899999997433  2344555554

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=93.20  E-value=0.11  Score=33.32  Aligned_cols=65  Identities=11%  Similarity=-0.077  Sum_probs=48.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~   87 (139)
                      ++|..||=++...+..+..++..|+.  + ....++.+.+..+.     ..   .||+|++|-..+.  -..+.+.+.
T Consensus         2 arILiVDD~~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~~~-----~~---~~dlil~D~~~p~~~G~~~~~~ir   68 (139)
T d1w25a1           2 ARILVVDDIEANVRLLEAKLTAEYYE--V-STAMDGPTALAMAA-----RD---LPDIILLDVMMPGMDGFTVCRKLK   68 (139)
T ss_dssp             CEEEEECSSTTHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCE--E-EEEccchhhhhhhh-----cc---cceeeeeeccccCCCchHHHHHhh
Confidence            57899999999999999999999873  3 46778888887654     35   8999999964333  234444443

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.43  Score=29.44  Aligned_cols=76  Identities=12%  Similarity=0.018  Sum_probs=53.0

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh--
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT--   88 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~--   88 (139)
                      +|..||=|+...+..+..++..|+.  + ....++.+.+..+.     ..   +||+|++|-..+  +-..+.+.+..  
T Consensus         2 kILiVDD~~~~~~~l~~~L~~~g~~--v-~~a~~~~~al~~l~-----~~---~~dlil~D~~mp~~~G~~l~~~lr~~~   70 (121)
T d1zesa1           2 RILVVEDEAPIREMVCFVLEQNGFQ--P-VEAEDYDSAVNQLN-----EP---WPDLILLDWMLPGGSGIQFIKHLKRES   70 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--E-EEECSHHHHHHHSS-----SS---CCSEEEECSSCTTSCHHHHHHHHHHST
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--E-EEECChHHHHHHHH-----cc---CCCEEEeecCCCCCCHHHHHHHHHhCc
Confidence            6888999999999999999999873  3 34667888887653     45   899999996433  33445555543  


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      ..+.--++++.
T Consensus        71 ~~~~~pvi~lt   81 (121)
T d1zesa1          71 MTRDIPVVMLT   81 (121)
T ss_dssp             TTTTSCEEEEE
T ss_pred             cCCCCeEEEEE
Confidence            33333455554

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=93.08  E-value=0.062  Score=39.00  Aligned_cols=70  Identities=11%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHH
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRET   85 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~   85 (139)
                      +...+.+.+|..++-.+..++|+.   -..++++++.|+.+.+..+...   .+   +=-+|++||+..   +|..+.+.
T Consensus       102 R~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~allPP---~~---rRgLVLIDPpYE~k~ey~~v~~~  172 (271)
T d2oo3a1         102 RSQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNALLPP---PE---KRGLIFIDPSYERKEEYKEIPYA  172 (271)
T ss_dssp             CTTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHHHCSC---TT---SCEEEEECCCCCSTTHHHHHHHH
T ss_pred             CCCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHhhCCC---CC---CceEEEecCCcCCHHHHHHHHHH
Confidence            345679999999999999987753   2468999999999998765321   23   445999999753   45554444


Q ss_pred             Hh
Q 044253           86 LM   87 (139)
Q Consensus        86 ~~   87 (139)
                      +.
T Consensus       173 l~  174 (271)
T d2oo3a1         173 IK  174 (271)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=92.89  E-value=0.12  Score=36.30  Aligned_cols=65  Identities=9%  Similarity=0.028  Sum_probs=44.3

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET   85 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~   85 (139)
                      +..+.+|++||+|+.+++.+++++...   ++++++++|+.++  .+.     ..   ....|+.+.++.-...++..
T Consensus        40 l~~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~--~~~-----~~---~~~~vv~NLPYnIss~il~~  104 (235)
T d1qama_          40 VQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF--KFP-----KN---QSYKIFGNIPYNISTDIIRK  104 (235)
T ss_dssp             HHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC--CCC-----SS---CCCEEEEECCGGGHHHHHHH
T ss_pred             HhCcCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhc--ccc-----cc---ccceeeeeehhhhhHHHHHH
Confidence            344678999999999999999876432   5899999999876  121     12   33457777766433444433

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.56  Score=28.74  Aligned_cols=75  Identities=9%  Similarity=0.068  Sum_probs=51.8

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~lL   90 (139)
                      +|..||-++...+..+..++..|+.  + ....++.+.+..+.     ..   +||+|++|...+.  -...++.+ +..
T Consensus         3 rILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~~a~~~~~-----~~---~~dliilD~~mp~~~g~~~~~~~-~~~   70 (120)
T d1zgza1           3 HIVIVEDEPVTQARLQSYFTQEGYT--V-SVTASGAGLREIMQ-----NQ---SVDLILLDINLPDENGLMLTRAL-RER   70 (120)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHH-HTT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHH-----hc---CCCEEeeehhhccchhHHHHHHH-hcc
Confidence            6889999999999999999999972  4 35677887776554     35   8999999974432  23344433 333


Q ss_pred             cCCeEEEEe
Q 044253           91 KVGGIVIYD   99 (139)
Q Consensus        91 ~~gG~ii~~   99 (139)
                      .+-.++++.
T Consensus        71 ~~~piI~lt   79 (120)
T d1zgza1          71 STVGIILVT   79 (120)
T ss_dssp             CCCEEEEEE
T ss_pred             CCCeEEEEE
Confidence            444455543

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.1  Score=32.48  Aligned_cols=74  Identities=5%  Similarity=0.001  Sum_probs=51.3

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..||=++...+..++.++..|+.  + ....++.+.+..+.     ..   +||+|++|...+  +-.++.+.+... 
T Consensus         2 nILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~l~-----~~---~~dliilD~~mP~~~G~e~~~~ir~~-   69 (119)
T d1zh2a1           2 NVLIVEDEQAIRRFLRTALEGDGMR--V-FEAETLQRGLLEAA-----TR---KPDLIILDLGLPDGDGIEFIRDLRQW-   69 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTCE--E-EEESSHHHHHHHHH-----HH---CCSEEEEESEETTEEHHHHHHHHHTT-
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--E-EEeCCHHHHHHHHH-----hc---CCCEEEeccccCCCCCchHHHHHHhc-
Confidence            5788999999999999999988862  3 35677888877664     35   899999997332  234455555432 


Q ss_pred             cCCeEEEE
Q 044253           91 KVGGIVIY   98 (139)
Q Consensus        91 ~~gG~ii~   98 (139)
                      .+--++++
T Consensus        70 ~~~piI~l   77 (119)
T d1zh2a1          70 SAVPVIVL   77 (119)
T ss_dssp             CCCCEEEE
T ss_pred             cCCcEEEE
Confidence            33344544

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.78  E-value=0.11  Score=36.75  Aligned_cols=77  Identities=13%  Similarity=0.079  Sum_probs=52.7

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hH
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YR   80 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~   80 (139)
                      ..+....+++..|+- +.       ++..+..++++++.+|.++.   .       .   ..|++++-....+     -.
T Consensus       100 ~~~~P~l~~~v~Dlp-~v-------i~~~~~~~ri~~~~gd~~~~---~-------p---~~D~~~l~~vLh~~~de~~~  158 (244)
T d1fp1d2         100 ISKYPLIKGINFDLP-QV-------IENAPPLSGIEHVGGDMFAS---V-------P---QGDAMILKAVCHNWSDEKCI  158 (244)
T ss_dssp             HHHCTTCEEEEEECH-HH-------HTTCCCCTTEEEEECCTTTC---C-------C---CEEEEEEESSGGGSCHHHHH
T ss_pred             HHHCCCCeEEEecch-hh-------hhccCCCCCeEEecCCcccc---c-------c---cceEEEEehhhhhCCHHHHH
Confidence            344456788899873 22       34556678999999998642   2       3   5799988543222     24


Q ss_pred             HHHHHHhhcccCCeEEEEeCCCC
Q 044253           81 NYRETLMTLFKVGGIVIYDNTLW  103 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~~~~~~  103 (139)
                      .+++.+.+.|+|||.+++.+...
T Consensus       159 ~iL~~~~~aL~pgg~llI~e~v~  181 (244)
T d1fp1d2         159 EFLSNCHKALSPNGKVIIVEFIL  181 (244)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEEEEEEe
Confidence            57888889999999988765543

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.4  Score=29.92  Aligned_cols=68  Identities=10%  Similarity=0.091  Sum_probs=49.8

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM   87 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~   87 (139)
                      +..+|..||-++......++.++..|+. .+ ....++.+.+..+.     ..   +||+|++|-..+  +-.++++.+.
T Consensus         3 k~lriLvVDD~~~~r~~i~~~L~~~g~~-~v-~~a~~g~~a~~~~~-----~~---~~dlii~D~~mP~~dG~el~~~ir   72 (128)
T d1jbea_           3 KELKFLVVDDFSTMRRIVRNLLKELGFN-NV-EEAEDGVDALNKLQ-----AG---GYGFVISDWNMPNMDGLELLKTIR   72 (128)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHT-----TC---CCCEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCc-EE-EEecCchHHHHHHh-----cC---CCCEEEEecccccCCHHHHHHHHH
Confidence            3458999999999999999999999974 23 34577888776553     35   899999997543  3344556554

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.59  E-value=0.6  Score=29.51  Aligned_cols=77  Identities=21%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l   89 (139)
                      .+|..||=++...+..++.++..|.. .......|+.+.+..+.     ..   .||+|++|-..+  +-.++++.+.+.
T Consensus         4 irVLiVDD~~~~r~~l~~~L~~~g~~-~~v~~a~~g~~al~~~~-----~~---~pDlvllDi~MP~~dG~e~~~~ir~~   74 (140)
T d1a2oa1           4 IRVLSVDDSALMRQIMTEIINSHSDM-EMVATAPDPLVARDLIK-----KF---NPDVLTLDVEMPRMDGLDFLEKLMRL   74 (140)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH-----HH---CCSEEEEECCCSSSCHHHHHHHHHHS
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEEECCHHHHHHHHH-----hc---CCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            47999999999999999999887741 12223578888877654     35   799999997433  334456665444


Q ss_pred             ccCCeEEEE
Q 044253           90 FKVGGIVIY   98 (139)
Q Consensus        90 L~~gG~ii~   98 (139)
                       .+...+++
T Consensus        75 -~~~~~i~i   82 (140)
T d1a2oa1          75 -RPMPVVMV   82 (140)
T ss_dssp             -SCCCEEEE
T ss_pred             -CCCCcEEE
Confidence             45554443

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=92.57  E-value=0.15  Score=32.09  Aligned_cols=68  Identities=6%  Similarity=-0.019  Sum_probs=49.1

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~   88 (139)
                      ..+|..||=|+......++.++..|+. .+ ....|+.+.+..+.     +.   +||+|++|...+.  -.++++.+..
T Consensus         6 ~~kILiVDD~~~~~~~l~~~L~~~g~~-~v-~~a~~~~~al~~l~-----~~---~~dlii~D~~mP~~~G~el~~~lr~   75 (129)
T d1p6qa_           6 KIKVLIVDDQVTSRLLLGDALQQLGFK-QI-TAAGDGEQGMKIMA-----QN---PHHLVISDFNMPKMDGLGLLQAVRA   75 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCS-CE-ECCSSHHHHHHHHH-----TS---CCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCe-EE-EEECCHHHHHHHHH-----hC---CCCeEEeeeecCCCChHHHHHHHHh
Confidence            347999999999999999999998873 12 23457777776553     45   8999999975443  3445565543

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.55  E-value=0.4  Score=29.64  Aligned_cols=72  Identities=10%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      +++|..||=++...+..+..++..|   .+. ...++.+.+..       ..   +||+|++|...+  +-..+++.+..
T Consensus         2 M~kILiVDDd~~~~~~l~~~L~~~g---~v~-~~~~~~~al~~-------~~---~~dlillD~~mP~~~G~~~~~~lr~   67 (120)
T d1p2fa2           2 MWKIAVVDDDKNILKKVSEKLQQLG---RVK-TFLTGEDFLND-------EE---AFHVVVLDVMLPDYSGYEICRMIKE   67 (120)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTTE---EEE-EESSHHHHHHC-------CS---CCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhCC---EEE-EECCHHHHHhc-------CC---CCCEEEEeCcccccchhHHHHHHhh
Confidence            4689999999999999999998766   233 45677777653       35   899999997433  22344554443


Q ss_pred             cccCCeEEE
Q 044253           89 LFKVGGIVI   97 (139)
Q Consensus        89 lL~~gG~ii   97 (139)
                      . .+.-.++
T Consensus        68 ~-~~~~~ii   75 (120)
T d1p2fa2          68 T-RPETWVI   75 (120)
T ss_dssp             H-CTTSEEE
T ss_pred             c-CCCCcEE
Confidence            3 3444333

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.34  E-value=0.53  Score=29.58  Aligned_cols=67  Identities=10%  Similarity=0.086  Sum_probs=48.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      ..+|..||=++......++.++..|+.  +. ...++.+.+..+.     ..   +||+|++|...+  +-..+++.+..
T Consensus         8 ~~~ILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~g~ea~~~~~-----~~---~~dlillD~~mP~~dG~el~~~ir~   76 (133)
T d2ayxa1           8 DMMILVVDDHPINRRLLADQLGSLGYQ--CK-TANDGVDALNVLS-----KN---HIDIVLSDVNMPNMDGYRLTQRIRQ   76 (133)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHHTSE--EE-EECCSHHHHHHHH-----HS---CCSEEEEEESSCSSCCHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCE--EE-EECcHHHHHHHHh-----cc---CceEEEEeccCCCCCHHHHHHHHHH
Confidence            357999999999999999999999973  43 5677777776553     35   899999996433  22345555543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.09  E-value=0.18  Score=33.13  Aligned_cols=75  Identities=12%  Similarity=-0.013  Sum_probs=48.1

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+.+++++..+++..+.+++    .|...-+.....|..+.+.+...    ..   .+|+||--...    +.++.+.+.
T Consensus        49 ~g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~t~----~~---g~d~v~d~~g~----~~~~~~~~~  113 (183)
T d1pqwa_          49 IGARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTD----GY---GVDVVLNSLAG----EAIQRGVQI  113 (183)
T ss_dssp             HTCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTT----TC---CEEEEEECCCT----HHHHHHHHT
T ss_pred             ccccceeeeccccccccccc----ccccccccCCccCHHHHHHHHhC----CC---CEEEEEecccc----hHHHHHHHH
Confidence            46788888888887777664    56532222233445454444321    24   79999865432    356778899


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+++|+++.-
T Consensus       114 l~~~G~~v~~  123 (183)
T d1pqwa_         114 LAPGGRFIEL  123 (183)
T ss_dssp             EEEEEEEEEC
T ss_pred             hcCCCEEEEE
Confidence            9999999863

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.71  Score=32.35  Aligned_cols=81  Identities=14%  Similarity=0.032  Sum_probs=56.4

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCCCc-------
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAHKD-------   77 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~~~-------   77 (139)
                      +++|+.++++.+.++.+.+.++..+.  ++.++.+|..+.      ..+..++   ..   +.|+++.++...       
T Consensus        28 g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~---~g---~iDiLVnNAGi~~~~~~~~   99 (275)
T d1wmaa1          28 SGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE---YG---GLDVLVNNAGIAFKVADPT   99 (275)
T ss_dssp             SSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH---HS---SEEEEEECCCCCCCTTCCS
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh---cC---CcEEEEEcCCcCCCCCccc
Confidence            67999999999999999999987764  588888887542      2233222   24   899999886421       


Q ss_pred             ----chH-----------HHHHHHhhcccCCeEEEEe
Q 044253           78 ----NYR-----------NYRETLMTLFKVGGIVIYD   99 (139)
Q Consensus        78 ----~~~-----------~~~~~~~~lL~~gG~ii~~   99 (139)
                          .+.           ...+.++++++++|.++.-
T Consensus       100 ~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1         100 PFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence                111           1234566888999988753

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.86  E-value=0.8  Score=28.20  Aligned_cols=75  Identities=8%  Similarity=-0.003  Sum_probs=52.3

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..||=++...+..++.++..|+.  +. ...++.+.+..+.     ..   +||+|++|...+  +-.++++.+...-
T Consensus         3 kILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~~~eal~~~~-----~~---~~dlvl~D~~mP~~~G~el~~~ir~~~   71 (121)
T d1ys7a2           3 RVLVVDDDSDVLASLERGLRLSGFE--VA-TAVDGAEALRSAT-----EN---RPDAIVLDINMPVLDGVSVVTALRAMD   71 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HS---CCSEEEEESSCSSSCHHHHHHHHHHTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hC---CCCEEEEEeeccCcccHHHHHHHHhcC
Confidence            6889999999999999999999873  33 5667888877664     35   899999996433  3344555555433


Q ss_pred             cCCeEEEE
Q 044253           91 KVGGIVIY   98 (139)
Q Consensus        91 ~~gG~ii~   98 (139)
                      ..=-++++
T Consensus        72 ~~~piI~l   79 (121)
T d1ys7a2          72 NDVPVCVL   79 (121)
T ss_dssp             CCCCEEEE
T ss_pred             CCCEEEEE
Confidence            33334444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.41  E-value=0.17  Score=34.05  Aligned_cols=81  Identities=11%  Similarity=0.080  Sum_probs=52.7

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~   86 (139)
                      .+++|+.+|.+.+.++..+..+.     .+++....+-....+.+       .   ..|+|+.-.   .+..+.-+-+..
T Consensus        54 lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~-------~---~aDivI~aalipG~~aP~lIt~~m  118 (168)
T d1pjca1          54 LGAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAV-------A---EADLLIGAVLVPGRRAPILVPASL  118 (168)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHH-------H---TCSEEEECCCCTTSSCCCCBCHHH
T ss_pred             CCCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhh-------c---cCcEEEEeeecCCcccCeeecHHH
Confidence            37899999999999988776543     34677777665554433       3   699999764   222222233566


Q ss_pred             hhcccCCeEEEEeCCCCCc
Q 044253           87 MTLFKVGGIVIYDNTLWGG  105 (139)
Q Consensus        87 ~~lL~~gG~ii~~~~~~~~  105 (139)
                      .+.+|||.+|+=-.+-.+|
T Consensus       119 v~~Mk~GSVIVDvaidqGG  137 (168)
T d1pjca1         119 VEQMRTGSVIVDVAVDQGG  137 (168)
T ss_dssp             HTTSCTTCEEEETTCTTCC
T ss_pred             HhhcCCCcEEEEeecCCCC
Confidence            7888999888732333333

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.33  E-value=0.36  Score=31.94  Aligned_cols=78  Identities=13%  Similarity=0.086  Sum_probs=45.5

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh-hc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM-TL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~-~l   89 (139)
                      .+|+++|.+++.++.|++.    |-..-+.....|. .+.+.+...    ..   .+|.++.....   ...++... .+
T Consensus        55 ~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~~----g~---G~d~vi~~~g~---~~~~~~a~~~~  120 (176)
T d1d1ta2          55 SRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEMT----GN---NVGYTFEVIGH---LETMIDALASC  120 (176)
T ss_dssp             SEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHHH----TS---CCCEEEECSCC---HHHHHHHHTTS
T ss_pred             ceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHhc----cc---cceEEEEeCCc---hHHHHHHHHHh
Confidence            5899999999999999874    5432222223332 222222211    35   79999887653   22333444 45


Q ss_pred             ccCCeEEEEeCCCC
Q 044253           90 FKVGGIVIYDNTLW  103 (139)
Q Consensus        90 L~~gG~ii~~~~~~  103 (139)
                      ++.+|.+++-...-
T Consensus       121 ~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         121 HMNYGTSVVVGVPP  134 (176)
T ss_dssp             CTTTCEEEECSCCC
T ss_pred             hcCCeEEEEEEccc
Confidence            55668888755433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.33  E-value=0.35  Score=31.93  Aligned_cols=75  Identities=9%  Similarity=0.041  Sum_probs=45.8

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC--hHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESR--ALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d--a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+|+++|++++.++.|++    .|...-+.....|  ..+......     ..   .+|.||-....   ...++....
T Consensus        52 ~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~~-----~~---G~d~vid~~g~---~~~~~~~~~  116 (174)
T d1p0fa2          52 ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEKT-----NG---GVDYAVECAGR---IETMMNALQ  116 (174)
T ss_dssp             CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHHHH
T ss_pred             CceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHhc-----CC---CCcEEEEcCCC---chHHHHHHH
Confidence            3579999999999999975    5654323333344  333333221     34   79999987653   334455555


Q ss_pred             cc-cCCeEEEEeC
Q 044253           89 LF-KVGGIVIYDN  100 (139)
Q Consensus        89 lL-~~gG~ii~~~  100 (139)
                      .+ +++|.+++-.
T Consensus       117 ~~~~~~G~~v~vG  129 (174)
T d1p0fa2         117 STYCGSGVTVVLG  129 (174)
T ss_dssp             TBCTTTCEEEECC
T ss_pred             HHHHhcCceEEEE
Confidence            55 4568887644

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=1.3  Score=30.76  Aligned_cols=63  Identities=10%  Similarity=-0.074  Sum_probs=47.5

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcC
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ..+..+++|+.++++++.++.+.+.++..+...++..+++|+.+      .+.....+   ..   +.|+++..+
T Consensus        29 ~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~---~g---~iD~lVnnA   97 (257)
T d1xg5a_          29 ALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ---HS---GVDICINNA   97 (257)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH---HC---CCSEEEECC
T ss_pred             HHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh---cC---CCCEEEecc
Confidence            44567889999999999999999989888876788999988763      22323222   24   799998875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.12  E-value=1.6  Score=30.27  Aligned_cols=64  Identities=14%  Similarity=-0.013  Sum_probs=46.7

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCC-CCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEV-DLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~-~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ...+..+++|+.++++.+.++.+.+.+...+. ..++.++.+|+.+      .+.....+   ..   +.|+++..+
T Consensus        23 ~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~---~g---~iDilvnnA   93 (264)
T d1spxa_          23 VLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK---FG---KLDILVNNA   93 (264)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH---HS---CCCEEEECC
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH---hC---CCCEeeccc
Confidence            34566789999999999999999998888765 3569999998752      23333222   24   799998764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.94  E-value=1.4  Score=30.77  Aligned_cols=64  Identities=19%  Similarity=0.065  Sum_probs=46.7

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ...+..+++|+.++++++.++.+.+.+...+.. .++..+.+|+.+      .+.+...+   ..   +.|+++..+
T Consensus        23 ~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~---~g---~iDilvnnA   93 (272)
T d1xkqa_          23 ILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ---FG---KIDVLVNNA   93 (272)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH---HS---CCCEEEECC
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH---hC---CceEEEeCC
Confidence            345567889999999999999999999887763 468999998653      22332222   24   799999864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=90.94  E-value=0.17  Score=35.61  Aligned_cols=76  Identities=11%  Similarity=0.049  Sum_probs=50.8

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRN   81 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~   81 (139)
                      .+....+++..|.. +.       ++..+..+|++++.+|.++.          ..   .+|++++---..+     -..
T Consensus       100 ~~~P~l~~~v~Dlp-~v-------i~~~~~~~rv~~~~gD~f~~----------~p---~aD~~~l~~vLHdw~d~~~~~  158 (244)
T d1fp2a2         100 ETFPKLKCIVFDRP-QV-------VENLSGSNNLTYVGGDMFTS----------IP---NADAVLLKYILHNWTDKDCLR  158 (244)
T ss_dssp             HHCTTCEEEEEECH-HH-------HTTCCCBTTEEEEECCTTTC----------CC---CCSEEEEESCGGGSCHHHHHH
T ss_pred             HhCCCCeEEEecCH-HH-------HHhCcccCceEEEecCcccC----------CC---CCcEEEEEeecccCChHHHHH
Confidence            34446688888973 22       34566778999999998752          23   6899988543222     245


Q ss_pred             HHHHHhhcccCC---eEEEEeCCCC
Q 044253           82 YRETLMTLFKVG---GIVIYDNTLW  103 (139)
Q Consensus        82 ~~~~~~~lL~~g---G~ii~~~~~~  103 (139)
                      +++.+.+.|+||   |.+++.+...
T Consensus       159 iL~~~~~al~pgg~~~~lli~e~~~  183 (244)
T d1fp2a2         159 ILKKCKEAVTNDGKRGKVTIIDMVI  183 (244)
T ss_dssp             HHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             HHHHHHHHcCcccCCcEEEEEEeec
Confidence            788888999998   6665544433

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=90.87  E-value=1  Score=28.19  Aligned_cols=76  Identities=13%  Similarity=0.041  Sum_probs=50.5

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF   90 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL   90 (139)
                      +|..||=++...+..++.++..+.. .+.....++.+.+..+.     ..   .||+|++|-..+  +-.++++.+.+. 
T Consensus         4 ~VLiVDD~~~~r~~l~~~L~~~~~~-~~v~~a~~~~~al~~~~-----~~---~~DlvllD~~mP~~~G~el~~~ir~~-   73 (138)
T d1a04a2           4 TILLIDDHPMLRTGVKQLISMAPDI-TVVGEASNGEQGIELAE-----SL---DPDLILLDLNMPGMNGLETLDKLREK-   73 (138)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTCTTE-EEEEEESSHHHHHHHHH-----HH---CCSEEEEETTSTTSCHHHHHHHHHHS-
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHH-----hc---CCCEEEEecCCCCCCHHHHHHHHHhh-
Confidence            6888999999999999888765521 22234678888876654     35   799999997443  334566666543 


Q ss_pred             cCCeEEEE
Q 044253           91 KVGGIVIY   98 (139)
Q Consensus        91 ~~gG~ii~   98 (139)
                      .+...+++
T Consensus        74 ~~~~~viv   81 (138)
T d1a04a2          74 SLSGRIVV   81 (138)
T ss_dssp             CCCSEEEE
T ss_pred             CCCCCEEE
Confidence            34444433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.78  E-value=0.13  Score=33.65  Aligned_cols=66  Identities=14%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK   91 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~   91 (139)
                      .+|+++|.+++.++.|++.    +..+   ....+.... .        ..   ..|+|++..+.....++++.+.+.++
T Consensus        27 ~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~~-~--------~~---~~dlIila~p~~~~~~vl~~l~~~~~   87 (171)
T d2g5ca2          27 GKIYGYDINPESISKAVDL----GIID---EGTTSIAKV-E--------DF---SPDFVMLSSPVRTFREIAKKLSYILS   87 (171)
T ss_dssp             SEEEEECSCHHHHHHHHHT----TSCS---EEESCGGGG-G--------GT---CCSEEEECSCHHHHHHHHHHHHHHSC
T ss_pred             eEEEEEECChHHHHHHHHh----hcch---hhhhhhhhh-h--------cc---ccccccccCCchhhhhhhhhhhcccc
Confidence            4799999999999998764    3211   111111111 0        12   45666666554445555555555555


Q ss_pred             CCeEE
Q 044253           92 VGGIV   96 (139)
Q Consensus        92 ~gG~i   96 (139)
                      ++.++
T Consensus        88 ~~~ii   92 (171)
T d2g5ca2          88 EDATV   92 (171)
T ss_dssp             TTCEE
T ss_pred             ccccc
Confidence            55444

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.31  E-value=0.33  Score=32.02  Aligned_cols=76  Identities=14%  Similarity=0.051  Sum_probs=48.7

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+++|+++..+++..+.+++    .|...-+.....+..+...+...    ..   .+|+||=...    .+.++...+
T Consensus        52 ~~Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~~----~~---Gvd~v~D~vG----~~~~~~~~~  116 (182)
T d1v3va2          52 LKGCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS----PD---GYDCYFDNVG----GEFLNTVLS  116 (182)
T ss_dssp             HTTCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC----TT---CEEEEEESSC----HHHHHHHGG
T ss_pred             ccCCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHhh----cC---CCceeEEecC----chhhhhhhh
Confidence            347899999999988777765    46532232233333333322211    34   7999765443    346778899


Q ss_pred             cccCCeEEEEe
Q 044253           89 LFKVGGIVIYD   99 (139)
Q Consensus        89 lL~~gG~ii~~   99 (139)
                      .|+++|.++.-
T Consensus       117 ~l~~~G~~v~~  127 (182)
T d1v3va2         117 QMKDFGKIAIC  127 (182)
T ss_dssp             GEEEEEEEEEC
T ss_pred             hccCCCeEEee
Confidence            99999999974

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.02  E-value=0.55  Score=31.00  Aligned_cols=75  Identities=17%  Similarity=0.118  Sum_probs=47.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC--hHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESR--ALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d--a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+|+.+|.+++.++.|++    .|...-+.....|  .........     ..   .+|+||--...   ...++...+.
T Consensus        54 ~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~-----~~---G~d~vie~~G~---~~~~~~a~~~  118 (174)
T d1e3ia2          54 SRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----AG---GVDYSLDCAGT---AQTLKAAVDC  118 (174)
T ss_dssp             SEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----TS---CBSEEEESSCC---HHHHHHHHHT
T ss_pred             ceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhhh-----cC---CCcEEEEeccc---chHHHHHHHH
Confidence            479999999999988876    4653222222222  222222221     35   79999865543   4467888899


Q ss_pred             ccCC-eEEEEeCC
Q 044253           90 FKVG-GIVIYDNT  101 (139)
Q Consensus        90 L~~g-G~ii~~~~  101 (139)
                      +++| |.+++-..
T Consensus       119 ~~~g~G~~v~vG~  131 (174)
T d1e3ia2         119 TVLGWGSCTVVGA  131 (174)
T ss_dssp             BCTTTCEEEECCC
T ss_pred             hhcCCeEEEecCC
Confidence            9996 99987544

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.59  E-value=0.65  Score=30.32  Aligned_cols=69  Identities=13%  Similarity=0.086  Sum_probs=44.6

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++|++++.+++..+.+++    .|... + +   |..+.......    ..   .+|+||- +.-.    .++...+.
T Consensus        51 ~G~~vi~~~~~~~~~~~~~~----lGa~~-~-i---~~~~~~~~~~~----~~---g~D~v~d-~~G~----~~~~~~~~  109 (171)
T d1iz0a2          51 MGLRVLAAASRPEKLALPLA----LGAEE-A-A---TYAEVPERAKA----WG---GLDLVLE-VRGK----EVEESLGL  109 (171)
T ss_dssp             TTCEEEEEESSGGGSHHHHH----TTCSE-E-E---EGGGHHHHHHH----TT---SEEEEEE-CSCT----THHHHHTT
T ss_pred             cccccccccccccccccccc----cccce-e-e---ehhhhhhhhhc----cc---ccccccc-ccch----hHHHHHHH
Confidence            47799999999998888765    56532 2 2   22232222221    35   7998864 4322    35677899


Q ss_pred             ccCCeEEEEe
Q 044253           90 FKVGGIVIYD   99 (139)
Q Consensus        90 L~~gG~ii~~   99 (139)
                      |+++|.++.-
T Consensus       110 l~~~G~~v~~  119 (171)
T d1iz0a2         110 LAHGGRLVYI  119 (171)
T ss_dssp             EEEEEEEEEC
T ss_pred             HhcCCcEEEE
Confidence            9999999864

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=89.47  E-value=0.03  Score=39.93  Aligned_cols=64  Identities=8%  Similarity=-0.018  Sum_probs=45.1

Q ss_pred             hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253            7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR   83 (139)
Q Consensus         7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~   83 (139)
                      .+..+.+|++||+|+++++.+++.+.   ..++++++++|+.++  .+.     ..   .++.|+...++.--..++
T Consensus        47 L~~~~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~--~~~-----~~---~~~~vv~NLPY~Ist~il  110 (245)
T d1yuba_          47 LAKISKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF--QFP-----NK---QRYKIVGNIPYHLSTQII  110 (245)
T ss_dssp             HHHHSSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT--TCC-----CS---SEEEEEEECCSSSCHHHH
T ss_pred             HHhhcCceeEeeecccchhhhhhhhh---hccchhhhhhhhhcc--ccc-----cc---eeeeEeeeeehhhhHHHH
Confidence            34456799999999999999887653   235899999999876  221     24   677788877654333333

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.23  E-value=1.9  Score=28.29  Aligned_cols=67  Identities=6%  Similarity=-0.041  Sum_probs=48.7

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT   88 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~   88 (139)
                      .+|..||=++......+..++..|+  .+.-..+++.+.+..+.     ..   .||+|++|-..+  +-.++++.+..
T Consensus         4 ~kILiVDD~~~~r~~l~~~L~~~g~--~vv~~a~~g~eal~~~~-----~~---~pDlvllDi~mP~~dG~e~~~~ir~   72 (190)
T d1s8na_           4 RRVLIAEDEALIRMDLAEMLREEGY--EIVGEAGDGQEAVELAE-----LH---KPDLVIMDVKMPRRDGIDAASEIAS   72 (190)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHh-----cC---CCCEEEEeccccCcchHHHHHHHHh
Confidence            3688999999999999999998886  24335688888876654     35   899999997433  23445555543

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=87.38  E-value=1.8  Score=27.13  Aligned_cols=84  Identities=11%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh--hcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE--KIHFFFENFDYAFVDAHKDN--YRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~--~~~~~~~~fD~If~D~~~~~--~~~~~~~~~   87 (139)
                      .+|..||=|+......++.++..|..-++. ...|+.+.+..+....  ....   +||+|++|...+.  -.++++.+.
T Consensus         3 krILiVDD~~~~~~~l~~~L~~~g~~~~v~-~a~~g~eAl~~l~~~~~~~~~~---~pdlillD~~mP~~dG~el~~~ir   78 (140)
T d1k68a_           3 KKIFLVEDNKADIRLIQEALANSTVPHEVV-TVRDGMEAMAYLRQEGEYANAS---RPDLILLDLNLPKKDGREVLAEIK   78 (140)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHTCSSCCEEE-EECSHHHHHHHHTTCGGGGSCC---CCSEEEECSSCSSSCHHHHHHHHH
T ss_pred             CcEEEEECCHHHHHHHHHHHHHcCCCeEEE-EECCHHHHHHHHHHhHHhhccC---CCCEEEEeeccccccChHHHHHHH
Confidence            479999999999999999999888743333 3556777665542210  0013   6999999975433  344555554


Q ss_pred             h--cccCCeEEEEe
Q 044253           88 T--LFKVGGIVIYD   99 (139)
Q Consensus        88 ~--lL~~gG~ii~~   99 (139)
                      .  .++.=-++++.
T Consensus        79 ~~~~~~~iPvI~ls   92 (140)
T d1k68a_          79 SDPTLKRIPVVVLS   92 (140)
T ss_dssp             HSTTGGGSCEEEEE
T ss_pred             hCcccCCCcEEEEe
Confidence            3  23322345554

>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Positive regulator of the amidase operon AmiR
domain: Positive regulator of the amidase operon AmiR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.13  E-value=1  Score=29.44  Aligned_cols=57  Identities=9%  Similarity=0.119  Sum_probs=41.9

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD   77 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~   77 (139)
                      ....+..+|..||-++......+..++..|+.  +... .++.+.+         ..   +||+|++|...+
T Consensus         6 ~~~l~~~~iLvvdd~~~~~~~l~~~L~~~G~~--v~~~-~~~~~al---------~~---~~Dlvl~D~~mp   62 (189)
T d1qo0d_           6 LGSLRELQVLVLNPPGEVSDALVLQLIRIGCS--VRQC-WPPPEAF---------DV---PVDVVFTSIFQN   62 (189)
T ss_dssp             HHTGGGCEEEEESCTTHHHHHHHHHHHHHTCE--EEEE-CSCCSSC---------SS---CCSEEEEECCSS
T ss_pred             HHhccCCEEEEEeCCHHHHHHHHHHHHHcCCc--ceec-CCHHHhc---------cC---CCCEEEEcCCCC
Confidence            34456779999999999999999999999963  3333 2333332         35   899999997543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.07  E-value=0.86  Score=29.40  Aligned_cols=73  Identities=14%  Similarity=0.087  Sum_probs=46.2

Q ss_pred             hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253           11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus        11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ...|+++|.+++..+.+++    .|...-+....  .++.+.+....     ..   .+|+||--...   ...++.+..
T Consensus        53 ~~~vi~~~~~~~k~~~ak~----lGa~~~i~~~~~~~~~~~~~~~~~-----~~---g~D~vid~~G~---~~~~~~~~~  117 (176)
T d2fzwa2          53 ASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT-----DG---GVDYSFECIGN---VKVMRAALE  117 (176)
T ss_dssp             CSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHHHH
T ss_pred             cCceEEEcccHHHHHHHHH----hCCcEEEeCCchhhHHHHHHHHHc-----CC---CCcEeeecCCC---HHHHHHHHH
Confidence            3579999999999998875    46532222211  23334433321     34   79999876543   346677888


Q ss_pred             cccCCeEEEE
Q 044253           89 LFKVGGIVIY   98 (139)
Q Consensus        89 lL~~gG~ii~   98 (139)
                      ++++||.+++
T Consensus       118 ~~~~g~~~~~  127 (176)
T d2fzwa2         118 ACHKGWGVSV  127 (176)
T ss_dssp             TBCTTTCEEE
T ss_pred             hhcCCceeEE
Confidence            9999877654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.67  Score=32.70  Aligned_cols=67  Identities=9%  Similarity=0.025  Sum_probs=43.1

Q ss_pred             hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253            8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR   83 (139)
Q Consensus         8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~   83 (139)
                      +..+.+|++||+|+.+++..++...   ..++++++++|+..+ +.++....  ..   ++ .|+.+.++.--..++
T Consensus        40 l~~~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~~~~~~~~--~~---~~-~vvgNlPY~Iss~Il  107 (252)
T d1qyra_          40 GERLDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNFGELAEKM--GQ---PL-RVFGNLPYNISTPLM  107 (252)
T ss_dssp             HTTCSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCHHHHHHHH--TS---CE-EEEEECCTTTHHHHH
T ss_pred             HccCCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhccccccccc--CC---Ce-EEEecchHHHHHHHH
Confidence            3456789999999999999987432   236899999999864 22222110  13   34 677776654333333

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.90  E-value=0.67  Score=30.79  Aligned_cols=77  Identities=12%  Similarity=-0.008  Sum_probs=45.7

Q ss_pred             hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253            9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT   88 (139)
Q Consensus         9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~   88 (139)
                      ..+++|+++-.+++..+.+++    .|...-+. ...+..+......     ..   .+|+||=.....    .++..++
T Consensus        54 ~~Ga~Viat~~s~~k~~~~~~----lGa~~vi~-~~~~~~~~~~~~~-----~~---gvD~vid~vgg~----~~~~~l~  116 (176)
T d1xa0a2          54 KRGYTVEASTGKAAEHDYLRV----LGAKEVLA-REDVMAERIRPLD-----KQ---RWAAAVDPVGGR----TLATVLS  116 (176)
T ss_dssp             HTTCCEEEEESCTTCHHHHHH----TTCSEEEE-CC---------CC-----SC---CEEEEEECSTTT----THHHHHH
T ss_pred             HcCCceEEecCchHHHHHHHh----cccceeee-cchhHHHHHHHhh-----cc---CcCEEEEcCCch----hHHHHHH
Confidence            357899999999999988874    46532222 2222222222221     34   899766544322    3667889


Q ss_pred             cccCCeEEEEeCCC
Q 044253           89 LFKVGGIVIYDNTL  102 (139)
Q Consensus        89 lL~~gG~ii~~~~~  102 (139)
                      .|+++|.++.-...
T Consensus       117 ~l~~~Griv~~G~~  130 (176)
T d1xa0a2         117 RMRYGGAVAVSGLT  130 (176)
T ss_dssp             TEEEEEEEEECSCC
T ss_pred             HhCCCceEEEeecc
Confidence            99999999874443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=86.42  E-value=1.9  Score=27.59  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL   89 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l   89 (139)
                      .+++++.+|.+++..+.+++    .|..   .++...-.......      ..   .+|.+|-......   .++...++
T Consensus        53 ~Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~~------~~---~~D~vid~~g~~~---~~~~~~~~  113 (168)
T d1uufa2          53 MGAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------LK---SFDFILNTVAAPH---NLDDFTTL  113 (168)
T ss_dssp             TTCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------TT---CEEEEEECCSSCC---CHHHHHTT
T ss_pred             ccccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHHh------cC---CCceeeeeeecch---hHHHHHHH
Confidence            46788899999998888764    4643   23332222222211      24   7999987654322   24567899


Q ss_pred             ccCCeEEEEeC
Q 044253           90 FKVGGIVIYDN  100 (139)
Q Consensus        90 L~~gG~ii~~~  100 (139)
                      ++++|.+++-.
T Consensus       114 l~~~G~iv~~G  124 (168)
T d1uufa2         114 LKRDGTMTLVG  124 (168)
T ss_dssp             EEEEEEEEECC
T ss_pred             HhcCCEEEEec
Confidence            99999999754

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=86.39  E-value=2.2  Score=26.97  Aligned_cols=84  Identities=18%  Similarity=0.090  Sum_probs=52.8

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh-----hcccCCCceeEEEEcCCCcc--hHHHHH
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE-----KIHFFFENFDYAFVDAHKDN--YRNYRE   84 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~-----~~~~~~~~fD~If~D~~~~~--~~~~~~   84 (139)
                      .+|..||=|+......++.++..|+...+ ....++.+.+..+....     ....   .+|+|++|...+.  -.++++
T Consensus         7 ~~ILiVDD~~~~~~~l~~~L~~~g~~~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~---~pdlillD~~mP~~~G~el~~   82 (149)
T d1k66a_           7 QPLLVVEDSDEDFSTFQRLLQREGVVNPI-YRCITGDQALDFLYQTGSYCNPDIAP---RPAVILLDLNLPGTDGREVLQ   82 (149)
T ss_dssp             SCEEEECCCHHHHHHHHHHHHHTTBCSCE-EEECSHHHHHHHHHTCCSSSCGGGCC---CCSEEEECSCCSSSCHHHHHH
T ss_pred             CcEEEEECCHHHHHHHHHHHHHcCCceEE-EEECChHHHHHHHHhhcccccccccc---CCCeEEccccccCCCcHHHHH
Confidence            46999999999999999999999985333 34567777765442110     0013   6999999975433  334555


Q ss_pred             HHhh--cccCCeEEEEe
Q 044253           85 TLMT--LFKVGGIVIYD   99 (139)
Q Consensus        85 ~~~~--lL~~gG~ii~~   99 (139)
                      .+..  .++.=-++++.
T Consensus        83 ~ir~~~~~~~ipiI~lT   99 (149)
T d1k66a_          83 EIKQDEVLKKIPVVIMT   99 (149)
T ss_dssp             HHTTSTTGGGSCEEEEE
T ss_pred             HHHhccccCCCeEEEEe
Confidence            5542  33333355553

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=4.1  Score=27.94  Aligned_cols=64  Identities=11%  Similarity=0.028  Sum_probs=46.6

Q ss_pred             chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCC
Q 044253            4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAH   75 (139)
Q Consensus         4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~   75 (139)
                      +...+..+++|+.++++++.++...+.+...|  .++..+.+|..+.      ++....+   .+   ..|+++..+.
T Consensus        24 a~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~---~g---~idilinnag   93 (244)
T d1yb1a_          24 AYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE---IG---DVSILVNNAG   93 (244)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH---TC---CCSEEEECCC
T ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH---cC---CCceeEeecc
Confidence            34456678999999999999999998888766  4688999887643      2222222   24   7999988763

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=84.78  E-value=1.6  Score=28.42  Aligned_cols=82  Identities=16%  Similarity=0.130  Sum_probs=44.2

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcchH
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDNYR   80 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~~~   80 (139)
                      |.|......+.+|+..|++++.++...++    +.......-.....+.....       .   ..|.|++.. ......
T Consensus        16 ~mA~~L~~~G~~V~v~dr~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~-------~---~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2          16 NLILNMNDHGFVVCAFNRTVSKVDDFLAN----EAKGTKVLGAHSLEEMVSKL-------K---KPRRIILLVKAGQAVD   81 (176)
T ss_dssp             HHHHHHHHTTCCEEEECSSTHHHHHHHHT----TTTTSSCEECSSHHHHHHHB-------C---SSCEEEECSCTTHHHH
T ss_pred             HHHHHHHHCCCeEEEEcCCHHHHHHHHHh----ccccccccchhhhhhhhhhh-------c---ccceEEEecCchHHHH
Confidence            44566777788999999999988766543    22111112222333332221       2   455555543 222334


Q ss_pred             HHHHHHhhcccCCeEEE
Q 044253           81 NYRETLMTLFKVGGIVI   97 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii   97 (139)
                      ...+.+...+++|.+++
T Consensus        82 ~v~~~l~~~~~~g~iii   98 (176)
T d2pgda2          82 NFIEKLVPLLDIGDIII   98 (176)
T ss_dssp             HHHHHHHHHCCTTCEEE
T ss_pred             HHHHHHHhccccCcEEE
Confidence            45555666666665544

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=84.40  E-value=2.9  Score=27.29  Aligned_cols=82  Identities=9%  Similarity=0.111  Sum_probs=48.9

Q ss_pred             hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC---hHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253           10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESR---ALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL   86 (139)
Q Consensus        10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d---a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~   86 (139)
                      .+++|+++=.+++..+...+.++..|...-+..-..+   ..+.+.+.....  ..   .+|+|| |+..   ...++..
T Consensus        53 ~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~--g~---~vdvv~-D~vg---~~~~~~~  123 (189)
T d1gu7a2          53 LNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS--GG---EAKLAL-NCVG---GKSSTGI  123 (189)
T ss_dssp             HTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH--TC---CEEEEE-ESSC---HHHHHHH
T ss_pred             cCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhc--cC---CceEEE-ECCC---cchhhhh
Confidence            4678888877777777777777888875322221111   122222221110  24   688887 4422   2346677


Q ss_pred             hhcccCCeEEEEeC
Q 044253           87 MTLFKVGGIVIYDN  100 (139)
Q Consensus        87 ~~lL~~gG~ii~~~  100 (139)
                      .+.|+++|.++.-.
T Consensus       124 ~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         124 ARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHTSCTTCEEEECC
T ss_pred             hhhhcCCcEEEEEC
Confidence            89999999998643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.53  E-value=2.5  Score=28.07  Aligned_cols=27  Identities=11%  Similarity=-0.182  Sum_probs=21.7

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHH
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGL   28 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar   28 (139)
                      |+|+..|..+.+|+++|+|++.++...
T Consensus        14 ~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2          14 VCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            566677777889999999998877654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.10  E-value=2.5  Score=29.25  Aligned_cols=64  Identities=14%  Similarity=0.019  Sum_probs=45.7

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ...+..+++|+.++++++.++.+.+.+...+...++..+.+|+.+      .+.+..++   ..   +.|+++..+
T Consensus        22 ~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~---~G---~iDiLVnnA   91 (258)
T d1iy8a_          22 VRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER---FG---RIDGFFNNA   91 (258)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH---HS---CCSEEEECC
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH---hC---CCCEEEECC
Confidence            345667889999999999999888877766655678888888653      22222222   24   799998765

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=82.93  E-value=5.3  Score=27.28  Aligned_cols=62  Identities=10%  Similarity=-0.042  Sum_probs=45.1

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ...+..+++|+.++++++.++.+.+.++..|.  ++..+.+|+.+.      +++..++   ..   +.|+++..+
T Consensus        20 ~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~---~g---~iDilVnnA   87 (257)
T d2rhca1          20 RRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVER---YG---PVDVLVNNA   87 (257)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH---TC---SCSEEEECC
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHH---hC---CCCEEEecc
Confidence            34566788999999999999999988887764  688899886532      2222221   24   799999775

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.69  E-value=1.6  Score=28.73  Aligned_cols=72  Identities=15%  Similarity=0.118  Sum_probs=46.4

Q ss_pred             ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253           13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV   92 (139)
Q Consensus        13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~   92 (139)
                      .|+++..+++....+.+   ..|...-+.....+..+.+.+..     ..   .+|+|| |+.-   ...++...+.|++
T Consensus        58 ~vi~~~~~~e~~~~l~~---~~gad~vi~~~~~~~~~~~~~~~-----~~---GvDvv~-D~vG---g~~~~~~~~~l~~  122 (187)
T d1vj1a2          58 RVVGICGTQEKCLFLTS---ELGFDAAVNYKTGNVAEQLREAC-----PG---GVDVYF-DNVG---GDISNTVISQMNE  122 (187)
T ss_dssp             EEEEEESSHHHHHHHHH---HSCCSEEEETTSSCHHHHHHHHC-----TT---CEEEEE-ESSC---HHHHHHHHTTEEE
T ss_pred             ceecccchHHHHhhhhh---cccceEEeeccchhHHHHHHHHh-----cc---CceEEE-ecCC---chhHHHHhhhccc
Confidence            46667777665554432   35654445555566777666653     34   799997 4432   3467788999999


Q ss_pred             CeEEEEe
Q 044253           93 GGIVIYD   99 (139)
Q Consensus        93 gG~ii~~   99 (139)
                      +|.++.-
T Consensus       123 ~G~iv~~  129 (187)
T d1vj1a2         123 NSHIILC  129 (187)
T ss_dssp             EEEEEEC
T ss_pred             cccEEEe
Confidence            9999863

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.28  E-value=2.2  Score=29.74  Aligned_cols=63  Identities=17%  Similarity=0.022  Sum_probs=46.2

Q ss_pred             hhhhhhcceeEEeCCccHHHHHHHHHHHcCC-CCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcC
Q 044253            6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEV-DLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~-~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ..+..+++|+.++++++.++.+.+.+...+. ..++..+.+|+.+.      +.+...+   ..   +.|+++..+
T Consensus        23 ~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~---~G---~iDilVnnA   92 (274)
T d1xhla_          23 IFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK---FG---KIDILVNNA   92 (274)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH---HS---CCCEEEECC
T ss_pred             HHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH---cC---CceEEEeec
Confidence            4456688999999999999999999988876 35789999986532      2322222   24   789999864

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.23  E-value=2.7  Score=28.88  Aligned_cols=62  Identities=15%  Similarity=0.043  Sum_probs=45.5

Q ss_pred             hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcC
Q 044253            5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDA   74 (139)
Q Consensus         5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~   74 (139)
                      ...+..+++|+.++++++.++.+.+.+...|  .++..+.+|+.+      .+....++   ..   +.|+++..+
T Consensus        19 ~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~---~g---~iDilVnnA   86 (255)
T d1gega_          19 LRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKT---LG---GFDVIVNNA   86 (255)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH---TT---CCCEEEECC
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH---hC---CccEEEecc
Confidence            3456678899999999999999998888776  368889999764      22222221   24   899999765

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=81.92  E-value=4.2  Score=25.40  Aligned_cols=84  Identities=14%  Similarity=0.149  Sum_probs=52.3

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh--hhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD--EKIHFFFENFDYAFVDAHKDN--YRNYRETLM   87 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~--~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~   87 (139)
                      .+|..||=|+......++.++..|+.-++ ....|+.+.+..+...  .....   .||+|++|...+.  -.++++.+.
T Consensus         4 k~ILiVdD~~~~~~~l~~~L~~~g~~~~v-~~a~~g~~Al~~l~~~~~~~~~~---~pdlIllD~~mP~~~G~el~~~ir   79 (144)
T d1i3ca_           4 KVILLVEDSKADSRLVQEVLKTSTIDHEL-IILRDGLAAMAFLQQQGEYENSP---RPNLILLDLNLPKKDGREVLAEIK   79 (144)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHSCCSCEEE-EEECSHHHHHHHHTTCGGGTTCC---CCSEEEECSCCSSSCHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCeEE-EEECCHHHHHHHHHhchhhhccC---CCCEEEEECccccccchHHHHHHH
Confidence            36889999999999999999998874222 2456777776554311  00013   6999999975433  344555554


Q ss_pred             h--cccCCeEEEEe
Q 044253           88 T--LFKVGGIVIYD   99 (139)
Q Consensus        88 ~--lL~~gG~ii~~   99 (139)
                      .  .++.=-++++.
T Consensus        80 ~~~~~~~iPvi~lT   93 (144)
T d1i3ca_          80 QNPDLKRIPVVVLT   93 (144)
T ss_dssp             HCTTTTTSCEEEEE
T ss_pred             hCcccCCCeEEEEE
Confidence            3  23333355554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=80.97  E-value=0.82  Score=30.46  Aligned_cols=73  Identities=14%  Similarity=0.133  Sum_probs=45.1

Q ss_pred             cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCc-----c------
Q 044253           12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKD-----N------   78 (139)
Q Consensus        12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~-----~------   78 (139)
                      .+|+++|+.+-           ..+ +.+.++++|.....  ........ ..   ++|+|+.|....     .      
T Consensus        48 ~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~-~~---~~DlVlSD~ap~~sg~~~~d~~~~  111 (180)
T d1ej0a_          48 GRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLERVG-DS---KVQVVMSDMAPNMSGTPAVDIPRA  111 (180)
T ss_dssp             CEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHHHT-TC---CEEEEEECCCCCCCSCHHHHHHHH
T ss_pred             ceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhhcc-Cc---ceeEEEecccchhcccchhHHHHH
Confidence            46888887663           134 46899999986432  11111110 24   799999997421     0      


Q ss_pred             ---hHHHHHHHhhcccCCeEEEEeC
Q 044253           79 ---YRNYRETLMTLFKVGGIVIYDN  100 (139)
Q Consensus        79 ---~~~~~~~~~~lL~~gG~ii~~~  100 (139)
                         ....+..+.+.|++||.+|+.-
T Consensus       112 ~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_         112 MYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhhhhccCCCCcEEEEE
Confidence               1123455668999999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.72  E-value=2.3  Score=27.40  Aligned_cols=86  Identities=12%  Similarity=0.015  Sum_probs=44.8

Q ss_pred             CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc-CCCcchH
Q 044253            2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD-AHKDNYR   80 (139)
Q Consensus         2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D-~~~~~~~   80 (139)
                      |++......+.+|+..|++++..+...+.-........... ..+.......+       .   ..+.++.- .+.....
T Consensus        15 ~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~   83 (178)
T d1pgja2          15 NLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL-------K---KPRKALILVQAGAATD   83 (178)
T ss_dssp             HHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB-------C---SSCEEEECCCCSHHHH
T ss_pred             HHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc-------c---cceEEEEeecCcchhh
Confidence            34556666788999999999988877665433333222332 33343443332       1   22223222 2222233


Q ss_pred             HHHHHHhhcccCCeEEEE
Q 044253           81 NYRETLMTLFKVGGIVIY   98 (139)
Q Consensus        81 ~~~~~~~~lL~~gG~ii~   98 (139)
                      ..+..+...+++|.+++.
T Consensus        84 ~~~~~~~~~~~~~~iii~  101 (178)
T d1pgja2          84 STIEQLKKVFEKGDILVD  101 (178)
T ss_dssp             HHHHHHHHHCCTTCEEEE
T ss_pred             hhhhhhhhhccccceecc
Confidence            444555566666665553