Citrus Sinensis ID: 044324

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
FAPSPTPASPTSLASAQRSPPLPSVPNASPAPAPLTVEEGREEFGDHVVPSGEVGDDEEGSEATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSKSVRDFM
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEEEccccHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHcccccEEEccccHHHHHHHHcccEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHcccccccEEEEEccccEEccccccccHHHHHHcccccc
ccccccccccHHHHHHccccccccccccEEEEccccccHHHHHHHHHHHHHHccccccccccccEEEEEEcHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHcccccEEEEccHHHHHccccccccEEEEEEccccccEEEEEEEEEEccccccccEEHHHccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHcccccccccccccccHHHHHHHHHHcccccEEEEEccHEEEccccccccHHHHHHHHHHcc
fapsptpasptslasaqrspplpsvpnaspapapltveegreefgdhvvpsgevgddeegseatIKWCAVRDQYEDCEYLVSIISQSedytwkcvkrdtAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEvycdhaqsyDAVAVINRKVcqengginlmdfkghkschgsystaagwnypvnhikgstptfdsgkisdiEIASSFFsevcapgefegtgmcsgcgiengschsnslyfgdsgAFRCLVEELGDIAFVRGDTAllyskegpqnqswssksvrdfm
fapsptpasptslasaqrsppLPSVPNASPAPAPLTVEEGREEFGDHVvpsgevgddeegseATIKWCAVRDQYEDCEYLVSIIsqsedytwkCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLyskegpqnqswssksvrdfm
FapsptpasptslasaQRspplpsvpnaspapapLTVEEGREEFGDHvvpsgevgddeegseATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSKSVRDFM
**************************************************************ATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLY*******************
***********SLASAQRSPPLPSVPNASPAPAPLTVEEGREEFGDHVVPSGEVGDD*EGSEATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSKSVRDFM
*********************************PLTVEEGREEFGDHVVPSG**********ATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSK*****************
*********P*****AQRSPPLPSVPNASPAPAPLTVEEGREEFGDHVVPSGEVGDDEEGSEATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSKSVRDFM
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FAPSPTPASPTSLASAQRSPPLPSVPNASPAPAPLTVEEGREEFGDHVVPSGEVGDDEEGSEATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSKSVRDFM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query291 2.2.26 [Sep-21-2011]
P14632 704 Lactotransferrin OS=Sus s yes no 0.745 0.308 0.321 2e-24
P02788 710 Lactotransferrin OS=Homo yes no 0.725 0.297 0.311 1e-21
O77698 708 Lactotransferrin OS=Bubal N/A no 0.745 0.306 0.301 2e-21
Q29545 704 Inhibitor of carbonic anh no no 0.666 0.275 0.336 2e-21
P02789 705 Ovotransferrin OS=Gallus yes no 0.687 0.283 0.321 9e-21
P27425 706 Serotransferrin OS=Equus yes no 0.687 0.283 0.312 1e-20
P80426 690 Serotransferrin-1 OS=Salm N/A no 0.663 0.279 0.312 2e-20
P56410 686 Ovotransferrin OS=Anas pl N/A no 0.711 0.301 0.315 2e-20
P80429 691 Serotransferrin-2 OS=Salm N/A no 0.663 0.279 0.312 2e-20
Q9TUM0 708 Lactotransferrin OS=Camel N/A no 0.731 0.300 0.311 2e-20
>sp|P14632|TRFL_PIG Lactotransferrin OS=Sus scrofa GN=LTF PE=1 SV=3 Back     alignment and function desciption
 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 120/255 (47%), Gaps = 38/255 (14%)

Query: 53  EVGDDEEGSEATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGE 111
           E   + E  +A + WCAV  ++   C    S  SQ+ +    C    T ++C+    KGE
Sbjct: 348 ETAAEVEARQAKVVWCAVGPEELRKCRQWSSQSSQNLN----CSLASTTEDCIVQVLKGE 403

Query: 112 ADIINLEAGLAYTAFLNFSMKAIANEVY--------CDH--AQSYDAVAVINRKVCQENG 161
           AD ++L+ G  YTA     +  +A            C H   Q Y AVAV+ +     NG
Sbjct: 404 ADAMSLDGGFIYTAGKCGLVPVLAENQKSRQSSSSDCVHRPTQGYFAVAVVRK----ANG 459

Query: 162 GINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPT--FDSGKISDIEIASSFFSEVCAP 219
           GI     +G KSCH +    AGWN P+  +   T +  FD            FFS+ CAP
Sbjct: 460 GITWNSVRGTKSCHTAVDRTAGWNIPMGLLVNQTGSCKFDE-----------FFSQSCAP 508

Query: 220 GEFEGTGMCSGC-----GIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSK 274
           G   G+ +C+ C     G++    +SN  Y+G +GAFRCL E  GD+AFV+ D  +L + 
Sbjct: 509 GSQPGSNLCALCVGNDQGVDKCVPNSNERYYGYTGAFRCLAENAGDVAFVK-DVTVLDNT 567

Query: 275 EGPQNQSWSSKSVRD 289
            G   + W+ +   D
Sbjct: 568 NGQNTEEWARELRSD 582
The lactotransferrin transferrin-like domain 1 functions as a serine protease of the peptidase S60 family that cuts arginine rich regions. This function contributes to the antimicrobial activity.
Sus scrofa (taxid: 9823)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -
>sp|P02788|TRFL_HUMAN Lactotransferrin OS=Homo sapiens GN=LTF PE=1 SV=6 Back     alignment and function description
>sp|O77698|TRFL_BUBBU Lactotransferrin OS=Bubalus bubalis GN=LTF PE=1 SV=1 Back     alignment and function description
>sp|Q29545|ICA_PIG Inhibitor of carbonic anhydrase OS=Sus scrofa GN=ICA PE=1 SV=1 Back     alignment and function description
>sp|P02789|TRFE_CHICK Ovotransferrin OS=Gallus gallus PE=1 SV=2 Back     alignment and function description
>sp|P27425|TRFE_HORSE Serotransferrin OS=Equus caballus GN=TF PE=2 SV=1 Back     alignment and function description
>sp|P80426|TRFE1_SALSA Serotransferrin-1 OS=Salmo salar GN=tf1 PE=1 SV=1 Back     alignment and function description
>sp|P56410|TRFE_ANAPL Ovotransferrin OS=Anas platyrhynchos PE=1 SV=1 Back     alignment and function description
>sp|P80429|TRFE2_SALSA Serotransferrin-2 OS=Salmo salar GN=tf2 PE=1 SV=1 Back     alignment and function description
>sp|Q9TUM0|TRFL_CAMDR Lactotransferrin OS=Camelus dromedarius GN=LTF PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
357443319373 Serotransferrin [Medicago truncatula] gi 0.883 0.689 0.581 1e-87
255587945 597 transferrin, putative [Ricinus communis] 0.305 0.149 0.758 7e-33
307102653 848 hypothetical protein CHLNCDRAFT_59390 [C 0.759 0.260 0.326 3e-25
260799005 3583 hypothetical protein BRAFLDRAFT_124962 [ 0.718 0.058 0.303 2e-24
47523782 686 lactotransferrin precursor [Sus scrofa] 0.745 0.316 0.325 4e-23
116488296 686 lactoferrin [Sus scrofa] 0.745 0.316 0.321 1e-22
41688298 704 lactotransferrin [Sus scrofa] 0.745 0.308 0.321 1e-22
164525 703 lactoferrin [Sus scrofa] 0.745 0.308 0.321 1e-22
17467354 704 lactoferrin, partial [Sus scrofa] 0.745 0.308 0.321 1e-22
3915882 704 RecName: Full=Lactotransferrin; Short=La 0.745 0.308 0.321 1e-22
>gi|357443319|ref|XP_003591937.1| Serotransferrin [Medicago truncatula] gi|355480985|gb|AES62188.1| Serotransferrin [Medicago truncatula] Back     alignment and taxonomy information
 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 153/263 (58%), Positives = 195/263 (74%), Gaps = 6/263 (2%)

Query: 29  SPAPAPLTVEEGREEFGDHVVPSGEVGDDEEGSEATIKWCAVRDQYEDCEYLVSIISQSE 88
           SP  A    E G    G H        +D    +  ++WCAVRD+ ++C+  V +ISQ  
Sbjct: 3   SPEAAAPISENG---VGGHGNGRANAPNDPATDDGGVRWCAVRDEVKECQSFVGVISQLT 59

Query: 89  DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDA 148
            Y WKC++++ AQ+CL+S +KGEAD++NLEAGLAY AF+N+SMKAIANE+Y D +++Y+A
Sbjct: 60  GYVWKCIQKEKAQDCLESIKKGEADLVNLEAGLAYIAFINYSMKAIANEIYYDRSKTYEA 119

Query: 149 VAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEI 208
           VAV+NR+VC+ N  I+LMDFKGHKSCHG YST AGWNYP+NHIK     F+  K++D EI
Sbjct: 120 VAVVNRRVCENNEKISLMDFKGHKSCHGGYSTVAGWNYPINHIKN---LFNDEKMNDKEI 176

Query: 209 ASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDT 268
           A+SFFS +CAP E EG   C+ CG EN +C+   LY+G SGAFRCLVEELGDIAFV+GDT
Sbjct: 177 ATSFFSRLCAPSEVEGFDTCNVCGKENETCNETGLYYGHSGAFRCLVEELGDIAFVKGDT 236

Query: 269 ALLYSKEGPQNQSWSSKSVRDFM 291
           AL YS EGP NQSWS+KS+RDFM
Sbjct: 237 ALFYSMEGPHNQSWSTKSLRDFM 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587945|ref|XP_002534449.1| transferrin, putative [Ricinus communis] gi|223525271|gb|EEF27935.1| transferrin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|307102653|gb|EFN50923.1| hypothetical protein CHLNCDRAFT_59390 [Chlorella variabilis] Back     alignment and taxonomy information
>gi|260799005|ref|XP_002594490.1| hypothetical protein BRAFLDRAFT_124962 [Branchiostoma floridae] gi|229279724|gb|EEN50501.1| hypothetical protein BRAFLDRAFT_124962 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|47523782|ref|NP_999527.1| lactotransferrin precursor [Sus scrofa] gi|164614|gb|AAA31102.1| lactoferrin [Sus scrofa] Back     alignment and taxonomy information
>gi|116488296|gb|ABJ98718.1| lactoferrin [Sus scrofa] Back     alignment and taxonomy information
>gi|41688298|dbj|BAD08651.1| lactotransferrin [Sus scrofa] Back     alignment and taxonomy information
>gi|164525|gb|AAA31059.1| lactoferrin [Sus scrofa] Back     alignment and taxonomy information
>gi|17467354|gb|AAL40161.1|L77887_1 lactoferrin, partial [Sus scrofa] Back     alignment and taxonomy information
>gi|3915882|sp|P14632.3|TRFL_PIG RecName: Full=Lactotransferrin; Short=Lactoferrin; Flags: Precursor Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
UNIPROTKB|P14632 704 LTF "Lactotransferrin" [Sus sc 0.697 0.288 0.354 1.8e-25
UNIPROTKB|Q6YT39 704 LTF "Lactotransferrin" [Sus sc 0.697 0.288 0.354 1.8e-25
UNIPROTKB|J9P430 756 TF "Uncharacterized protein" [ 0.680 0.261 0.334 2.4e-24
RGD|1310507 421 RGD1310507 "similar to RIKEN c 0.718 0.496 0.320 4.4e-24
UNIPROTKB|E9PST1 421 RGD1310507 "Protein RGD1310507 0.718 0.496 0.320 4.4e-24
UNIPROTKB|I3LBF1 704 ICA "Inhibitor of carbonic anh 0.649 0.268 0.348 4.1e-23
UNIPROTKB|K7GKK8345 K7GKK8 "Uncharacterized protei 0.735 0.620 0.304 4.8e-23
UNIPROTKB|Q29545 704 ICA "Inhibitor of carbonic anh 0.649 0.268 0.348 5.3e-23
UNIPROTKB|P02789 705 P02789 "Ovotransferrin" [Gallu 0.676 0.279 0.331 5.3e-23
UNIPROTKB|E7EQB2 696 LTF "Kaliocin-1" [Homo sapiens 0.721 0.301 0.331 8.5e-23
UNIPROTKB|P14632 LTF "Lactotransferrin" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 298 (110.0 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 84/237 (35%), Positives = 119/237 (50%)

Query:    63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGL 121
             A + WCAV  ++   C    S  SQ+ +    C    T ++C+    KGEAD ++L+ G 
Sbjct:   358 AKVVWCAVGPEELRKCRQWSSQSSQNLN----CSLASTTEDCIVQVLKGEADAMSLDGGF 413

Query:   122 AYTA-------FLNFSMKAI-ANEVYCDH--AQSYDAVAVINRKVCQENGGINLMDFKGH 171
              YTA        L  + K+  ++   C H   Q Y AVAV+ RK    NGGI     +G 
Sbjct:   414 IYTAGKCGLVPVLAENQKSRQSSSSDCVHRPTQGYFAVAVV-RKA---NGGITWNSVRGT 469

Query:   172 KSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGC 231
             KSCH +    AGWN P+  +   T    S K  +      FFS+ CAPG   G+ +C+ C
Sbjct:   470 KSCHTAVDRTAGWNIPMGLLVNQT---GSCKFDE------FFSQSCAPGSQPGSNLCALC 520

Query:   232 -GIENG--SC--HSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWS 283
              G + G   C  +SN  Y+G +GAFRCL E  GD+AFV+ D  +L +  G   + W+
Sbjct:   521 VGNDQGVDKCVPNSNERYYGYTGAFRCLAENAGDVAFVK-DVTVLDNTNGQNTEEWA 576
GO:0005576 "extracellular region" evidence=IEA
GO:0008236 "serine-type peptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0008199 "ferric iron binding" evidence=IEA
GO:0006879 "cellular iron ion homeostasis" evidence=IEA
GO:0006826 "iron ion transport" evidence=IEA
UNIPROTKB|Q6YT39 LTF "Lactotransferrin" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9P430 TF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310507 RGD1310507 "similar to RIKEN cDNA 1300017J02" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PST1 RGD1310507 "Protein RGD1310507" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LBF1 ICA "Inhibitor of carbonic anhydrase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GKK8 K7GKK8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q29545 ICA "Inhibitor of carbonic anhydrase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P02789 P02789 "Ovotransferrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQB2 LTF "Kaliocin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
smart00094 332 smart00094, TR_FER, Transferrin 2e-38
pfam00405328 pfam00405, Transferrin, Transferrin 6e-35
>gnl|CDD|214514 smart00094, TR_FER, Transferrin Back     alignment and domain information 
 Score =  137 bits (347), Expect = 2e-38
 Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 65  IKWCAVRDQYED-CEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAY 123
           ++WCAV +  +  C+         +    +CV   + +EC+ + +KGEAD + L+ G  Y
Sbjct: 1   VRWCAVSNAEKSKCDQWSVNSRGRDVPALECVSASSTEECIKAIQKGEADAVTLDGGDVY 60

Query: 124 TAFLNFSMKAIANEVYCDH---AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYST 180
           TA   +++  +  E Y         Y AVAV+ +     +        +G KSCH     
Sbjct: 61  TAGKPYNLVPVFAENYGSEEEPETGYYAVAVVKK----GSAIFTWNQLRGKKSCHTGVGR 116

Query: 181 AAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTG---MCSGC-GIENG 236
            AGWN P+  +               +  S FFS  CAPG  +      +C+ C G    
Sbjct: 117 TAGWNIPMGLLYNKLV-IRPPNCPFEKAVSKFFSASCAPGADKPDPNSNLCALCAGDNKC 175

Query: 237 SCHSNSLYFGDSGAFRCLVEELGDIAFVRGDT 268
           +C S+  Y+G SGAFRCL E  GD+AFV+  T
Sbjct: 176 ACSSHEPYYGYSGAFRCLAEGAGDVAFVKHST 207

Length = 332
>gnl|CDD|215903 pfam00405, Transferrin, Transferrin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 291
smart00094 332 TR_FER Transferrin. 100.0
PF00405330 Transferrin: Transferrin; InterPro: IPR001156 Tran 100.0
COG3221299 PhnD ABC-type phosphate/phosphonate transport syst 99.23
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 99.06
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 98.5
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 98.28
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 97.13
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 96.42
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 96.38
PRK11480320 tauA taurine transporter substrate binding subunit 95.91
PRK11553314 alkanesulfonate transporter substrate-binding subu 95.45
TIGR03427 328 ABC_peri_uca ABC transporter periplasmic binding p 94.94
cd00134218 PBPb Bacterial periplasmic transport systems use m 94.34
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 94.29
COG0715335 TauA ABC-type nitrate/sulfonate/bicarbonate transp 94.08
COG2358321 Imp TRAP-type uncharacterized transport system, pe 93.69
TIGR02122320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 91.98
PF03466209 LysR_substrate: LysR substrate binding domain; Int 87.02
PRK15010260 ABC transporter lysine/arginine/ornithine binding 86.86
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 82.81
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 82.73
PRK09495247 glnH glutamine ABC transporter periplasmic protein 82.26
PRK15437259 histidine ABC transporter substrate-binding protei 81.56
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 81.24
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 80.86
PRK11260266 cystine transporter subunit; Provisional 80.85
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 80.81
PRK11063271 metQ DL-methionine transporter substrate-binding s 80.19
>smart00094 TR_FER Transferrin Back     alignment and domain information 
Probab=100.00  E-value=9e-66  Score=490.42  Aligned_cols=218  Identities=32%  Similarity=0.643  Sum_probs=194.7

Q ss_pred             eEEEecc-chHHHHHHHHHHhhcC-CCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCC
Q 044324           65 IKWCAVR-DQYEDCEYLVSIISQS-EDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDH  142 (291)
Q Consensus        65 vRwCv~S-~E~~KC~~l~~~a~~~-~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~  142 (291)
                      |||||+| .|++||++| +.++.. .++.|+||.+.|+.+||++|++|+||+++||++++|+|++.++|+||++|.|..+
T Consensus         1 vrwCv~s~~e~~KC~~~-~~~~~~~~~~~v~Cv~~~s~~~Ci~~I~~g~AD~a~ldg~~~y~A~~~~~l~pi~~E~~~~~   79 (332)
T smart00094        1 VRWCAVSNAEKSKCDQW-SVNSRGRDVPALECVSASSTEECIKAIQKGEADAVTLDGGDVYTAGKPYNLVPVFAENYGSE   79 (332)
T ss_pred             CEEecCCHHHHHHHHHH-HHHHhhCCCCceEEEEcCCHHHHHHHHHCCCCCEEEECcHHHHhhcccCCceEEEEEeeccC
Confidence            7999999 999999999 655433 3599999999999999999999999999999999999998899999999999752


Q ss_pred             C---ceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhhccccccCCC
Q 044324          143 A---QSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAP  219 (291)
Q Consensus       143 ~---~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s~FFs~SCvP  219 (291)
                      +   ..||+||||||+    |++.+|+||||||+||||+++++||++|++.|++++++...+.-.++++ ++||++||+|
T Consensus        80 ~~~~~~Y~aVaVVkk~----S~i~sl~dLkGKksChtg~~stsGw~iP~~~L~~~g~i~~~~~~~~~av-s~fFs~sC~P  154 (332)
T smart00094       80 EEPETGYYAVAVVKKG----SAIFTWNQLRGKKSCHTGVGRTAGWNIPMGLLYNKLVIRPPNCPFEKAV-SKFFSASCAP  154 (332)
T ss_pred             CCCCceeEEEEEEECC----CCCCCHHHhCCCceecCCCCCcchhHHHHHHHHHcCCCCCCCCcHHHHH-HHHhhccccC
Confidence            2   489999999999    8889999999999999999999999999999999985321111114567 9999999999


Q ss_pred             CCCC---CCCCCcCCCCCCCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCCccccccc-cccc
Q 044324          220 GEFE---GTGMCSGCGIENGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSKS-VRDF  290 (291)
Q Consensus       220 G~~~---~~~LC~lC~g~~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~~~Wa~~~-~~~~  290 (291)
                      |++.   ++|||+||.|+ .+|.  ++|+||||.||||||+||+||||||||+||.+++ +|+|.++||++. .+||
T Consensus       155 G~~~~~~~~~LC~lC~g~-~~C~~~~~e~Y~Gy~GA~rCL~eg~GdVAFvk~~tv~~~~-~~~~~~~wa~~~~~~dy  229 (332)
T smart00094      155 GADKPDPNSNLCALCAGD-NKCACSSHEPYYGYSGAFRCLAEGAGDVAFVKHSTVFENT-DGKNGADWAKNLKRDDY  229 (332)
T ss_pred             CCCCCCCchhhHhhcCCC-CccCCCCCCcccCcchhheeeccCCccEEEEecccHHhhc-CCCCccccccccCccce
Confidence            9998   78999999985 7895  8999999999999999999999999999999999 999999999887 4555

>PF00405 Transferrin: Transferrin; InterPro: IPR001156 Transferrins are eukaryotic iron-binding glycoproteins that control the level of free iron in biological fluids [] Back     alignment and domain information
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins [] Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
1vfe_A333 Human Lactoferrin, N-terminal Lobe Mutant With Arg 9e-24
2pms_A 344 Crystal Structure Of The Complex Of Human Lactoferr 1e-23
1eh3_A334 R210k N-Terminal Lobe Human Lactoferrin Length = 33 1e-23
1hse_A334 H253m N Terminal Lobe Of Human Lactoferrin Length = 1e-23
1lct_A333 Structure Of The Recombinant N-Terminal Lobe Of Hum 2e-23
1vfd_A330 Human Lactoferrin, N-Terminal Lobe Mutant With Arg 2e-23
1l5t_A332 Crystal Structure Of A Domain-Opened Mutant (R121d) 2e-23
1dsn_A333 D60s N-Terminal Lobe Human Lactoferrin Length = 333 2e-23
1h45_A334 R210g N-Terminal Lobe Human Lactoferrin Length = 33 3e-23
1cb6_A 691 Structure Of Human Apolactoferrin At 2.0 A Resoluti 3e-23
2bjj_X 692 Structure Of Recombinant Human Lactoferrin Produced 4e-23
1lfg_A 691 Structure Of Diferric Human Lactoferrin Length = 69 4e-23
1fck_A 692 Structure Of Diceric Human Lactoferrin Length = 692 4e-23
1lfi_A 691 Metal Substitution In Transferrins: The Crystal Str 4e-23
1lfh_A 691 Molecular Replacement Solution Of The Structure Of 4e-23
1sqy_A 691 Structure Of Human Diferric Lactoferrin At 2.5a Res 5e-23
1lcf_A 691 Crystal Structure Of Copper-And Oxalate-Substituted 5e-23
1h43_A334 R210e N-Terminal Lobe Human Lactoferrin Length = 33 8e-23
1n76_A 690 Crystal Structure Of Human Seminal Lactoferrin At 3 9e-23
1b0l_A 691 Recombinant Human Diferric Lactoferrin Length = 691 1e-22
1oqg_A 337 Crystal Structure Of The D63e Mutant Of The N-Lobe 1e-22
1h44_A334 R210l N-Terminal Lobe Human Lactoferrin Length = 33 1e-22
1oqh_A 337 Crystal Structure Of The R124a Mutant Of The N-lobe 2e-22
1n7x_A331 Human Serum Transferrin, N-Lobe Y45e Mutant Length 2e-22
1ryo_A327 Human Serum Transferrin, N-Lobe Bound With Oxalate 3e-22
1jqf_A 334 Human Transferrin N-Lobe Mutant H249q Length = 334 3e-22
1fqf_A331 Crystal Structures Of Mutant (K296a) That Abolish T 3e-22
1n84_A331 Human Serum Transferrin, N-Lobe Length = 331 3e-22
1b3e_A 330 Human Serum Transferrin, N-Terminal Lobe, Expressed 3e-22
1bp5_A 337 Human Serum Transferrin, Recombinant N-Terminal Lob 3e-22
1dtg_A 334 Human Transferrin N-Lobe Mutant H249e Length = 334 3e-22
1suv_C329 Structure Of Human Transferrin Receptor-transferrin 3e-22
1d4n_A329 Human Serum Transferrin Length = 329 4e-22
1n04_A 686 Diferric Chicken Serum Transferrin At 2.8 A Resolut 4e-22
2hav_A 676 Apo-Human Serum Transferrin (Glycosylated) Length = 4e-22
1d3k_A329 Human Serum Transferrin Length = 329 5e-22
3v83_A 698 The 2.1 Angstrom Crystal Structure Of Diferric Huma 5e-22
1nnt_A328 Structural Evidence For A Ph-Sensitive Di-Lysine Tr 5e-22
3s9l_C 693 Complex Between Transferrin Receptor 1 And Transfer 5e-22
4h0w_A 679 Bismuth Bound Human Serum Transferrin Length = 679 5e-22
3ve1_B 679 The 2.9 Angstrom Crystal Structure Of Transferrin B 5e-22
3qyt_A 679 Diferric Bound Human Serum Transferrin Length = 679 5e-22
1ce2_A 689 Structure Of Diferric Buffalo Lactoferrin At 2.5a R 5e-22
1biy_A 689 Structure Of Diferric Buffalo Lactoferrin Length = 6e-22
2o84_X 337 Crystal Structure Of K206e Mutant Of N-Lobe Human T 6e-22
2o7u_B 337 Crystal Structure Of K206eK296E MUTANT OF THE N-Ter 7e-22
1fqe_A331 Crystal Structures Of Mutant (K206a) That Abolish T 8e-22
1nft_A329 Ovotransferrin, N-Terminal Lobe, Iron Loaded Open F 9e-22
2d3i_A 686 Crystal Structure Of Aluminum-Bound Ovotransferrin 1e-21
1iej_A332 Ovotransferrin, N-Terminal Lobe, Holo Form, At 1.65 1e-21
1n7w_A331 Crystal Structure Of Human Serum Transferrin, N-Lob 2e-21
1iq7_A 345 Ovotransferrin, C-Terminal Lobe, Apo Form Length = 3e-21
1blf_A 689 Structure Of Diferric Bovine Lactoferrin At 2.8 Ang 4e-21
1aov_A 686 Apo Duck Ovotransferrin Length = 686 4e-21
1jw1_A 689 Crystallization And Structure Determination Of Goat 4e-21
1sdx_A 335 Crystal Structure Of The Zinc Saturated C-Terminal 4e-21
2p1s_A 344 Crystal Structure Of The C-Terminal Lobe Of Bovine 4e-21
1nkx_A 348 Crystal Structure Of A Proteolytically Generated Fu 4e-21
2hau_A 676 Apo-Human Serum Transferrin (Non-Glycosylated) Leng 4e-21
2b65_A 345 Crystal Structure Of The Complex Of C-Lobe Of Bovin 4e-21
3fgs_A 337 Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE 5e-21
1dtz_A 689 Structure Of Camel Apo-Lactoferrin Demonstrates Its 6e-21
1b1x_A 689 Structure Of Diferric Mare Lactoferrin At 2.62a Res 6e-21
1f9b_A 695 Melanin Protein Interaction: X-Ray Structure Of The 6e-21
1tfd_A304 High-Resolution X-Ray Studies On Rabbit Serum Trans 3e-20
1h76_A 696 The Crystal Structure Of Diferric Porcine Serum Tra 4e-20
1jnf_A 676 Rabbit Serum Transferrin At 2.6 A Resolution Length 8e-20
3mc2_A 687 Crystal Structure Of The Murine Inhibitor Of Carbon 1e-19
3skp_A 342 The Structure Of Apo-Human Transferrin C-Lobe With 3e-17
3v89_B 343 The Crystal Structure Of Transferrin Binding Protei 3e-17
1suv_E 345 Structure Of Human Transferrin Receptor-transferrin 6e-17
1lgb_C159 Interaction Of A Legume Lectin With The N2 Fragment 3e-13
1gvc_A157 18kda N-Ii Domain Fragment Of Duck Ovotransferrin + 4e-12
1gv8_A159 18 Kda Fragment Of N-Ii Domain Of Duck Ovotransferr 4e-12
1ovb_A159 The Mechanism Of Iron Uptake By Transferrins: The S 1e-11
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121 Replaced By Ser (r121s) Length = 333 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (267), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 108/219 (49%), Gaps = 20/219 (9%)
Query: 64  TIKWCAV-RDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122
           +++WCAV + +   C      + +       C+KRD+  +C+ +  +  AD + L+ G  
Sbjct: 5   SVQWCAVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFI 64
Query: 123 YTAFL-NFSMKAIANEVYCDHAQS---YDAVAVINRKVCQENGGINLMDFKGHKSCHGSY 178
           Y A L  + ++ +A EVY    Q    Y AVAV+     ++ G   L + +G KSCH   
Sbjct: 65  YEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVV-----KKGGSFQLNELQGLKSCHTGL 119
Query: 179 STAAGWNYPVNHIKGSTPTFD-SGKISDIEIA-SSFFSEVCAPGEFEGT-----GMCSGC 231
            + AGWN P+  ++   P  + +G    IE A + FFS  C PG  +G       +C+G 
Sbjct: 120 RSTAGWNVPIGTLR---PFLNWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAGT 176
Query: 232 GIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTAL 270
           G    +  S   YF  SGAF+CL +  GD+AF+R  T  
Sbjct: 177 GENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVF 215
>pdb|2PMS|A Chain A, Crystal Structure Of The Complex Of Human Lactoferrin N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal Surface Protein A Length = 344 Back     alignment and structure
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1HSE|A Chain A, H253m N Terminal Lobe Of Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1LCT|A Chain A, Structure Of The Recombinant N-Terminal Lobe Of Human Lactoferrin At 2.0 Angstroms Resolution Length = 333 Back     alignment and structure
>pdb|1VFD|A Chain A, Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121 Replaced By Glu (R121e) Length = 330 Back     alignment and structure
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The Human Lactoferrin N-Lobe Refined From A Merohedrally- Twinned Crystal Form. Length = 332 Back     alignment and structure
>pdb|1DSN|A Chain A, D60s N-Terminal Lobe Human Lactoferrin Length = 333 Back     alignment and structure
>pdb|1H45|A Chain A, R210g N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution. Length = 691 Back     alignment and structure
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The Milk Of Transgenic Cows Length = 692 Back     alignment and structure
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin Length = 691 Back     alignment and structure
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin Length = 692 Back     alignment and structure
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure Of Human Copper-lactoferrin At 2.1 Angstroms Resolution Length = 691 Back     alignment and structure
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of Apolactoferrin, A Protein Displaying Large-Scale Conformational Change Length = 691 Back     alignment and structure
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution Using Crystals Grown At Ph 6.5 Length = 691 Back     alignment and structure
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human Lactoferrin At 2.0 Angstroms Resolution Length = 691 Back     alignment and structure
>pdb|1H43|A Chain A, R210e N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A Resolution Length = 690 Back     alignment and structure
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin Length = 691 Back     alignment and structure
>pdb|1OQG|A Chain A, Crystal Structure Of The D63e Mutant Of The N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|1H44|A Chain A, R210l N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1OQH|A Chain A, Crystal Structure Of The R124a Mutant Of The N-lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|1N7X|A Chain A, Human Serum Transferrin, N-Lobe Y45e Mutant Length = 331 Back     alignment and structure
>pdb|1RYO|A Chain A, Human Serum Transferrin, N-Lobe Bound With Oxalate Length = 327 Back     alignment and structure
>pdb|1JQF|A Chain A, Human Transferrin N-Lobe Mutant H249q Length = 334 Back     alignment and structure
>pdb|1FQF|A Chain A, Crystal Structures Of Mutant (K296a) That Abolish The Dilysine Interaction In The N-Lobe Of Human Transferrin Length = 331 Back     alignment and structure
>pdb|1N84|A Chain A, Human Serum Transferrin, N-Lobe Length = 331 Back     alignment and structure
>pdb|1B3E|A Chain A, Human Serum Transferrin, N-Terminal Lobe, Expressed In Pichia Pastoris Length = 330 Back     alignment and structure
>pdb|1BP5|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo Form Length = 337 Back     alignment and structure
>pdb|1DTG|A Chain A, Human Transferrin N-Lobe Mutant H249e Length = 334 Back     alignment and structure
>pdb|1SUV|C Chain C, Structure Of Human Transferrin Receptor-transferrin Complex Length = 329 Back     alignment and structure
>pdb|1D4N|A Chain A, Human Serum Transferrin Length = 329 Back     alignment and structure
>pdb|1N04|A Chain A, Diferric Chicken Serum Transferrin At 2.8 A Resolution. Length = 686 Back     alignment and structure
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated) Length = 676 Back     alignment and structure
>pdb|1D3K|A Chain A, Human Serum Transferrin Length = 329 Back     alignment and structure
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human Transferrin Length = 698 Back     alignment and structure
>pdb|1NNT|A Chain A, Structural Evidence For A Ph-Sensitive Di-Lysine Trigger In The Hen Ovotransferrin N-Lobe: Implications For Transferrin Iron Release Length = 328 Back     alignment and structure
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin With Iron In The N-Lobe, Cryocooled 2 Length = 693 Back     alignment and structure
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin Length = 679 Back     alignment and structure
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis In Complex With Human Transferrin Length = 679 Back     alignment and structure
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin Length = 679 Back     alignment and structure
>pdb|1CE2|A Chain A, Structure Of Diferric Buffalo Lactoferrin At 2.5a Resolution Length = 689 Back     alignment and structure
>pdb|1BIY|A Chain A, Structure Of Diferric Buffalo Lactoferrin Length = 689 Back     alignment and structure
>pdb|2O84|X Chain X, Crystal Structure Of K206e Mutant Of N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|2O7U|B Chain B, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal Half Molecule Of Human Transferrin Length = 337 Back     alignment and structure
>pdb|1FQE|A Chain A, Crystal Structures Of Mutant (K206a) That Abolish The Dilysine Interaction In The N-Lobe Of Human Transferrin Length = 331 Back     alignment and structure
>pdb|1NFT|A Chain A, Ovotransferrin, N-Terminal Lobe, Iron Loaded Open Form Length = 329 Back     alignment and structure
>pdb|2D3I|A Chain A, Crystal Structure Of Aluminum-Bound Ovotransferrin At 2.15 Angstrom Resolution Length = 686 Back     alignment and structure
>pdb|1IEJ|A Chain A, Ovotransferrin, N-Terminal Lobe, Holo Form, At 1.65 A Resolution Length = 332 Back     alignment and structure
>pdb|1N7W|A Chain A, Crystal Structure Of Human Serum Transferrin, N-Lobe L66w Mutant Length = 331 Back     alignment and structure
>pdb|1IQ7|A Chain A, Ovotransferrin, C-Terminal Lobe, Apo Form Length = 345 Back     alignment and structure
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms Resolution Length = 689 Back     alignment and structure
>pdb|1AOV|A Chain A, Apo Duck Ovotransferrin Length = 686 Back     alignment and structure
>pdb|1JW1|A Chain A, Crystallization And Structure Determination Of Goat Lactoferrin At 4.0 Resolution: A New Form Of Packing In Lactoferrins With A High Solvent Content In Crystals Length = 689 Back     alignment and structure
>pdb|1SDX|A Chain A, Crystal Structure Of The Zinc Saturated C-Terminal Half Of Bovine Lactoferrin At 2.0 A Resolution Reveals Two Additional Zinc Binding Sites Length = 335 Back     alignment and structure
>pdb|2P1S|A Chain A, Crystal Structure Of The C-Terminal Lobe Of Bovine Lactoferrin Complexed With O-Alpha-D-Glucopyranosyl-(1 3)-Alpha-D- Fructofuranosyl- (2 1)- Alpha-D-Glucopyranoside At 1.93 A Resolution Length = 344 Back     alignment and structure
>pdb|1NKX|A Chain A, Crystal Structure Of A Proteolytically Generated Functional Monoferric C-Lobe Of Bovine Lactoferrin At 1.9a Resolution Length = 348 Back     alignment and structure
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated) Length = 676 Back     alignment and structure
>pdb|2B65|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine Lactoferrin With Maltose At 1.5a Resolution Length = 345 Back     alignment and structure
>pdb|3FGS|A Chain A, Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demonstrates Its Dual Role In Sequestering And Transporting Ferric Ions Simultaneously:crystal Structure Of Camel Apo-Lactoferrin At 2.6a Resolution. Length = 689 Back     alignment and structure
>pdb|1B1X|A Chain A, Structure Of Diferric Mare Lactoferrin At 2.62a Resolution Length = 689 Back     alignment and structure
>pdb|1F9B|A Chain A, Melanin Protein Interaction: X-Ray Structure Of The Complex Of Mare Lactoferrin With Melanin Monomers Length = 695 Back     alignment and structure
>pdb|1TFD|A Chain A, High-Resolution X-Ray Studies On Rabbit Serum Transferrin: Preliminary Structure Analysis Of The N-Terminal Half- Molecule At 2.3 Angstroms Resolution Length = 304 Back     alignment and structure
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum Transferrin Length = 696 Back     alignment and structure
>pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resolution Length = 676 Back     alignment and structure
>pdb|3MC2|A Chain A, Crystal Structure Of The Murine Inhibitor Of Carbonic Anhydrase Length = 687 Back     alignment and structure
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound Sulfate Ions Length = 342 Back     alignment and structure
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A (Tbpa) From Neisseria Meningitidis Serogroup B In Complex With The C-Lobe Of Human Transferrin Length = 343 Back     alignment and structure
>pdb|1SUV|E Chain E, Structure Of Human Transferrin Receptor-transferrin Complex Length = 345 Back     alignment and structure
>pdb|1LGB|C Chain C, Interaction Of A Legume Lectin With The N2 Fragment Of Human Lactotransferrin Or With The Isolated Biantennary Glycopeptide: Role Of The Fucose Moiety Length = 159 Back     alignment and structure
>pdb|1GVC|A Chain A, 18kda N-Ii Domain Fragment Of Duck Ovotransferrin + Nta Length = 157 Back     alignment and structure
>pdb|1GV8|A Chain A, 18 Kda Fragment Of N-Ii Domain Of Duck Ovotransferrin Length = 159 Back     alignment and structure
>pdb|1OVB|A Chain A, The Mechanism Of Iron Uptake By Transferrins: The Structure Of An 18kd Nii-Domain Fragment At 2.3 Angstroms Resolution Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
1iej_A332 Ovotransferrin; iron, metal binding protein; 1.65A 9e-42
1h45_A334 Lactoferrin; metal transport, iron transport, meta 1e-39
1cb6_A 691 Protein (lactoferrin); iron transport, apolactofer 6e-39
1cb6_A 691 Protein (lactoferrin); iron transport, apolactofer 9e-28
2d3i_A 686 Ovotransferrin; aluminum, metal-binding, transport 4e-38
2d3i_A 686 Ovotransferrin; aluminum, metal-binding, transport 1e-26
1ryo_A327 Serotransferrin; iron transport, metal transport; 1e-35
1blf_A 689 Lactoferrin; transferrin, iron-binding protein, ca 1e-35
1blf_A 689 Lactoferrin; transferrin, iron-binding protein, ca 1e-26
3v83_A 698 Serotransferrin; iron binding domain, iron carrier 3e-34
3v83_A 698 Serotransferrin; iron binding domain, iron carrier 5e-26
3mc2_A 687 Inhibitor of carbonic anhydrase; MICA, transferrin 8e-34
3mc2_A 687 Inhibitor of carbonic anhydrase; MICA, transferrin 3e-27
3tod_A 335 Lactotransferrin; C-LOBE, metal binding protein, 1 4e-32
3skp_A 342 Serotransferrin; iron binding protein, transferrin 3e-28
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A* Length = 332 Back     alignment and structure
 Score =  145 bits (367), Expect = 9e-42
 Identities = 69/230 (30%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 61  SEATIKWCAVRDQYED-CEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEA 119
            ++ I+WC +    E  C  L   ++Q E  +  CV++ T  +C+ +    EAD I L+ 
Sbjct: 3   PKSVIRWCTISSPEEKKCNNL-RDLTQQERISLTCVQKATYLDCIKAIANNEADAITLDG 61

Query: 120 GLAYTAFLN-FSMKAIANEVYC---DHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCH 175
           G  + A L  + +K IA EVY        SY AVAV+ +          + D +G  SCH
Sbjct: 62  GQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKK-----GTEFTVNDLQGKTSCH 116

Query: 176 GSYSTAAGWNYPVNHIKGSTPTFDSG--KISDIEIASSFFSEVCAPGEFEGTGMCSGC-G 232
                +AGWN P+  +         G    S  +  + FFS  C PG      +C  C G
Sbjct: 117 TGLGRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQCKG 176

Query: 233 IENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSW 282
                C  N+ Y G SGAF CL +  GD+AFV+  T    + +       
Sbjct: 177 DPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQKDEYEL 226
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A Length = 334 Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Length = 691 Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Length = 691 Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Length = 686 Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Length = 686 Back     alignment and structure
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Length = 327 Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Length = 689 Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Length = 689 Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Length = 698 Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Length = 698 Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Length = 687 Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Length = 687 Back     alignment and structure
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A* 2dwa_A* 2dwh_A* ... Length = 335 Back     alignment and structure
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E Length = 342 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
3tod_A 335 Lactotransferrin; C-LOBE, metal binding protein, 1 100.0
3skp_A 342 Serotransferrin; iron binding protein, transferrin 100.0
3mc2_A 687 Inhibitor of carbonic anhydrase; MICA, transferrin 100.0
3v83_A 698 Serotransferrin; iron binding domain, iron carrier 100.0
3mc2_A 687 Inhibitor of carbonic anhydrase; MICA, transferrin 100.0
1iej_A332 Ovotransferrin; iron, metal binding protein; 1.65A 100.0
2d3i_A 686 Ovotransferrin; aluminum, metal-binding, transport 100.0
3v83_A 698 Serotransferrin; iron binding domain, iron carrier 100.0
1blf_A 689 Lactoferrin; transferrin, iron-binding protein, ca 100.0
1cb6_A 691 Protein (lactoferrin); iron transport, apolactofer 100.0
2d3i_A 686 Ovotransferrin; aluminum, metal-binding, transport 100.0
1h45_A334 Lactoferrin; metal transport, iron transport, meta 100.0
1cb6_A 691 Protein (lactoferrin); iron transport, apolactofer 100.0
1blf_A 689 Lactoferrin; transferrin, iron-binding protein, ca 100.0
1ryo_A327 Serotransferrin; iron transport, metal transport; 100.0
2j4u_S45 Lactotransferrin, lactoferrin; membrane protein/hy 98.92
3p7i_A 321 PHND, subunit of alkylphosphonate ABC transporter; 98.34
3n5l_A 310 Binding protein component of ABC phosphonate TRAN; 98.27
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 97.03
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 96.88
3qsl_A346 Putative exported protein; unknown, structural gen 96.43
3uif_A 348 Sulfonate ABC transporter, periplasmic sulfonate- 96.4
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 96.34
4esw_A 342 Pyrimidine biosynthesis enzyme THI13; thiamin pyri 95.9
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 95.78
4ddd_A327 Immunogenic protein; ssgcid, structural genomics, 95.72
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 95.0
3del_B242 Arginine binding protein; alpha and beta protein ( 94.88
3kzg_A237 Arginine 3RD transport system periplasmic binding 94.36
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 94.24
3hv1_A268 Polar amino acid ABC uptake transporter substrate 93.97
4eq9_A246 ABC transporter substrate-binding protein-amino A 93.92
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 93.82
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 93.79
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 93.66
3tql_A227 Arginine-binding protein; transport and binding pr 93.4
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 93.33
1us5_A314 Putative GLUR0 ligand binding core; receptor, memb 93.3
2vha_A287 Periplasmic binding transport protein; periplasmic 93.14
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 93.0
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 92.67
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 92.56
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 92.24
3qax_A268 Probable ABC transporter arginine-binding protein; 91.87
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 91.8
2yln_A283 Putative ABC transporter, periplasmic binding Pro 91.56
1xt8_A292 Putative amino-acid transporter periplasmic solut 90.28
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 90.22
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 89.72
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 89.55
1xs5_A241 29 kDa protein, membrane lipoprotein TPN32; peripl 89.29
2czl_A272 Hypothetical protein TTHA1568; conserved hypotheti 89.26
2nxo_A291 Hypothetical protein SCO4506; PFAM, DUF178, NYSGXR 87.77
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 87.55
1sw5_A275 Osmoprotection protein (PROX); binding-protein, co 87.36
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 86.5
1zbm_A280 Hypothetical protein AF1704; alpha-beta protein, s 86.16
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 85.91
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 85.48
1p99_A295 Hypothetical protein PG110; structural genomics, P 82.49
3k4u_A245 Binding component of ABC transporter; structural g 81.28
2q88_A257 EHUB, putative ABC transporter amino acid-binding 80.8
2g29_A 417 Nitrate transport protein NRTA; solute-binding pro 80.12
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ... Back     alignment and structure
Probab=100.00  E-value=6.7e-69  Score=510.75  Aligned_cols=209  Identities=34%  Similarity=0.661  Sum_probs=189.3

Q ss_pred             CceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeec-
Q 044324           63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYC-  140 (291)
Q Consensus        63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~-  140 (291)
                      ++|||||+| .|++||++| +.++   .|.|+||.+.|++|||++|++|+||+++||++++|+|++ ++|+|||+|.|. 
T Consensus         2 ~~vrWC~~s~~E~~KC~~~-~~~~---~~~i~Cv~~~s~~dCi~~I~~g~AD~~~ld~g~vy~Ag~-~~L~Pv~~E~y~~   76 (335)
T 3tod_A            2 TRVVWCAVGPEEQKKCQQW-SQQS---GQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGK-CGLVPVLAENRKS   76 (335)
T ss_dssp             CCEEEEEEHHHHHHHHHHH-HHHT---TTSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHH-TTCEEEEEEEECC
T ss_pred             CceEEccCCHHHHHHHHHH-HHhC---CCCeEEEecCCHHHHHHHHHcCCCCEEEECchheEEecc-CCceeEEEEeecc
Confidence            579999999 999999999 5443   489999999999999999999999999999999999985 899999999997 


Q ss_pred             ---C-C------CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhh
Q 044324          141 ---D-H------AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIAS  210 (291)
Q Consensus       141 ---~-~------~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s  210 (291)
                         + +      ..+||+||||||+    +++++|+||||||+||||+++++||+||++.|+++...|        ++ +
T Consensus        77 ~~~~~~~~~~~~~~~YyaVAVVkKs----~s~~tl~dLrGKksCHtg~g~tAGW~iP~g~L~~~~~~c--------~~-s  143 (335)
T 3tod_A           77 SKHSSLDCVLRPTEGYLAVAVVKKA----NEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSC--------AF-D  143 (335)
T ss_dssp             SSCCCSCGGGSCCCCEEEEEEEETT----CTTCCGGGCTTCEEEESCTTCTTTTHHHHHHHHHHHTCS--------CG-G
T ss_pred             cccccccccCCccceEEEEEEEEcC----CCCCCHHHcCCCCccCCCCCCccchhhhhhhhhhcCCCC--------CH-H
Confidence               3 1      2369999999995    446799999999999999999999999999998875556        36 9


Q ss_pred             ccccccCCCCCCCCCCCCcCCCCC---CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCCcccccc
Q 044324          211 SFFSEVCAPGEFEGTGMCSGCGIE---NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSK  285 (291)
Q Consensus       211 ~FFs~SCvPG~~~~~~LC~lC~g~---~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~~~Wa~~  285 (291)
                      +||++||+||++.+++||+||.|+   .++|+  ++|+||||.||||||+||+||||||||+||++++ +|+++++||++
T Consensus       144 ~FFs~sC~PG~~~~~~LC~lC~g~~~~~~kC~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tV~~~~-~g~~~~~wa~~  222 (335)
T 3tod_A          144 EFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENT-NGESTADWAKN  222 (335)
T ss_dssp             GSSSEEECTTSCTTSGGGTTCCCSTTSTTTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHHTS-TTSCCSTTTTT
T ss_pred             HhhhhhccCCCCCCcchhhhcCCCCCccCcCCCCCCCcCcCCCcceeeeccCCCcEEEEechhHHhhc-CCCCchhhhcc
Confidence            999999999999999999999995   36897  7899999999999999999999999999999999 99999999987


Q ss_pred             cc-ccc
Q 044324          286 SV-RDF  290 (291)
Q Consensus       286 ~~-~~~  290 (291)
                      .. +||
T Consensus       223 ~~~~dy  228 (335)
T 3tod_A          223 LKREDF  228 (335)
T ss_dssp             CCGGGE
T ss_pred             CChhhe
Confidence            65 445
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Back     alignment and structure
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A* Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Back     alignment and structure
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Back     alignment and structure
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Back     alignment and structure
>2j4u_S Lactotransferrin, lactoferrin; membrane protein/hydrolase, membrane protein/hydrolase complex, iron, OMPC, porin, complex, protease; 2.99A {Camelus dromedarius} Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A* Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Back     alignment and structure
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Back     alignment and structure
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A* Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 291
d1ieja_329 c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gall 1e-38
d1ce2a1333 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buf 6e-37
d1eh3a_324 c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [T 8e-37
d1ryoa_324 c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [T 2e-36
d2d3ia2 352 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gall 6e-35
d2b6da1 344 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) 7e-32
d1h76a2 346 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) 7e-29
d2hava1 325 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctola 1e-27
d1gv8a_159 c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhyn 3e-27
d1lgbc_159 c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [T 3e-23
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 329 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Transferrin
domain: Ovotransferrin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  136 bits (344), Expect = 1e-38
 Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 14/226 (6%)

Query: 62  EATIKWCAVRDQ-YEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120
           ++ I+WC +     + C  L   ++Q E  +  CV++ T  +C+ +    EAD I L+ G
Sbjct: 1   KSVIRWCTISSPEEKKCNNL-RDLTQQERISLTCVQKATYLDCIKAIANNEADAITLDGG 59

Query: 121 LAYTAFL-NFSMKAIANEVYC---DHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHG 176
             + A L  + +K IA EVY        SY AVAV+ +          + D +G  SCH 
Sbjct: 60  QVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKK-----GTEFTVNDLQGKTSCHT 114

Query: 177 SYSTAAGWNYPVNHI--KGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIE 234
               +AGWN P+  +  +G+         S  +  + FFS  C PG      +C  C  +
Sbjct: 115 GLGRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQCKGD 174

Query: 235 NGS-CHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQN 279
             + C  N+ Y G SGAF CL +  GD+AFV+  T    + +    
Sbjct: 175 PKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQKDE 220
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]} Length = 333 Back     information, alignment and structure
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 324 Back     information, alignment and structure
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 324 Back     information, alignment and structure
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 352 Back     information, alignment and structure
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} Length = 344 Back     information, alignment and structure
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]} Length = 346 Back     information, alignment and structure
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 325 Back     information, alignment and structure
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]} Length = 159 Back     information, alignment and structure
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
d1ieja_329 Ovotransferrin {Chicken (Gallus gallus) [TaxId: 90 100.0
d1ce2a1333 Lactoferrin {Domestic water buffalo (Bubalus arnee 100.0
d2d3ia2 352 Ovotransferrin {Chicken (Gallus gallus) [TaxId: 90 100.0
d2hava1 325 Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId 100.0
d2b6da1 344 Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ryoa_324 Transferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1eh3a_324 Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1h76a2 346 Transferrin {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1gv8a_159 Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 100.0
d1lgbc_159 Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1us5a_298 Putative GluR0 ligand binding core {Thermus thermo 94.52
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 92.1
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 88.55
d2nxoa1277 Hypothetical protein SCo4506 {Streptomyces coelico 81.59
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Transferrin
domain: Ovotransferrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5.6e-65  Score=480.89  Aligned_cols=208  Identities=32%  Similarity=0.625  Sum_probs=186.7

Q ss_pred             CCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEee
Q 044324           62 EATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVY  139 (291)
Q Consensus        62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y  139 (291)
                      +.+|||||+| .|++||++| +.+++..+|.|+||++.|++|||++|++|+||+++||++++|+|+ +.|+|+||++|.|
T Consensus         1 k~~vRwCv~s~~E~~KC~~l-~~~~~~~~p~i~CV~~~s~~~C~~~I~~g~AD~~~ld~~~~y~Ag~~~~~L~pi~~E~y   79 (329)
T d1ieja_           1 KSVIRWCTISSPEEKKCNNL-RDLTQQERISLTCVQKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIAAEVY   79 (329)
T ss_dssp             CEEEEEEESSHHHHHHHHHH-HHHTTTSSEEEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEEEEEE
T ss_pred             CCcEEEEeCCHHHHHHHHHH-HHHhhccCCCeEEEeCCCHHHHHHHHhcCCCCEEEEChHHHHHhhcccCCCEEEEEEee
Confidence            3589999999 999999999 777766679999999999999999999999999999999999997 6799999999999


Q ss_pred             cCCC---ceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCC---C-CCCCchhhhhhcc
Q 044324          140 CDHA---QSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTF---D-SGKISDIEIASSF  212 (291)
Q Consensus       140 ~~~~---~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c---~-~~~~~~~~~~s~F  212 (291)
                      ..+.   ..|++||||||+    + ..+|++|||||+||||+++++||++||++|++++++.   + ...+ .+++ ++|
T Consensus        80 ~~~~~~~~~y~aVavvkk~----s-~~~~~~LkGkksCHtG~~~~aGw~~P~~~L~~~~~i~~~~~~~~~~-~~~v-~~F  152 (329)
T d1ieja_          80 EHTEGSTTSYYAVAVVKKG----T-EFTVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAIEWEGIESGSV-EQAV-AKF  152 (329)
T ss_dssp             ECSSSEESEEEEEEEEETT----C-CCCGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCCGGGCCH-HHHH-HHH
T ss_pred             cCCCCCceEEEEEEEEecC----C-ccchhhccCCcccccCCCCcchhhHHHHHHHhcCCCCccCCCCccH-HHHH-HHH
Confidence            7643   279999999999    7 5699999999999999999999999999999998543   2 2222 3467 999


Q ss_pred             ccccCCCCCCCCCCCCcCCCC-CCCCCCCCCCccCccccccccccCCCcEEEEechhhhhhhcCCCC
Q 044324          213 FSEVCAPGEFEGTGMCSGCGI-ENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQ  278 (291)
Q Consensus       213 Fs~SCvPG~~~~~~LC~lC~g-~~~~C~~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~  278 (291)
                      |++||+||.+.+++||+||.| +..+|+.+|+||||.||||||+||+||||||+|+||.+++ ++++
T Consensus       153 F~~sC~PG~~~~~~LC~lC~g~~~~~c~~~~~Y~Gy~GA~rCL~eg~GDVAFvk~~tv~~~~-~~~~  218 (329)
T d1ieja_         153 FSASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENA-PDQK  218 (329)
T ss_dssp             SSEEECTTCCSCGGGGTTCCSCTTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHC-TTSG
T ss_pred             hhhhhhcCCCCCcchhhhcCCCCcccCCCCCccccccCHHHHHHcCCCcEEEEechhHhhhc-cccc
Confidence            999999999999999999998 4567888999999999999999999999999999999999 6643
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]} Back     information, alignment and structure
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]} Back     information, alignment and structure
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure