Citrus Sinensis ID: 044382
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR4 | 1054 | Putative disease resistan | yes | no | 0.755 | 0.388 | 0.401 | 4e-78 | |
| Q9LRR5 | 1424 | Putative disease resistan | no | no | 0.764 | 0.291 | 0.406 | 1e-75 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.629 | 0.352 | 0.372 | 2e-45 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.793 | 0.440 | 0.320 | 4e-42 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.745 | 0.409 | 0.328 | 2e-41 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.775 | 0.424 | 0.322 | 3e-40 | |
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.276 | 0.177 | 0.327 | 2e-08 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.513 | 0.306 | 0.284 | 5e-08 | |
| P0DI18 | 1049 | Probable disease resistan | no | no | 0.664 | 0.344 | 0.252 | 7e-08 | |
| P0DI17 | 1049 | Probable disease resistan | no | no | 0.664 | 0.344 | 0.252 | 7e-08 |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 172/428 (40%), Positives = 252/428 (58%), Gaps = 18/428 (4%)
Query: 11 SRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGGKRFEDLY 70
+R++MHD I++LAQ+A+G+ F+ ++ Q S + R+LSY+ + + FE L
Sbjct: 488 TRYIMHDFINELAQFASGE--FSSKFEDGCKLQVS--ERTRYLSYLRDNYAEPMEFEALR 543
Query: 71 DIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELP-DSIGDLRY 128
+++ LRTFLP+ L+N S L + KL L RLRV SL Y I LP D ++ +
Sbjct: 544 EVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISH 603
Query: 129 LRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLE 188
R+L+LS T + LP+S+ +YNL TLLL C LK+L D+ NLI L +L+ T L
Sbjct: 604 ARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLR 662
Query: 189 EMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARL 248
+MP G+L LQTL F V GS + EL L L G LKI +L+ + D+ DA EA L
Sbjct: 663 QMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANL 722
Query: 249 DGKKNLKELSLNW----TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT 304
+ KK+L+E+ W + S + + + E +V + L+PH+++E+ I Y G +FP
Sbjct: 723 NSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPD 782
Query: 305 WLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFY------GD 358
WL D SF +V ++ +C CT+LPS+GQLP LK L + GM + +G KFY D
Sbjct: 783 WLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRD 842
Query: 359 DSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPAL 418
PF LETLRF++L +W+EW+ ++G + FP L++L ILRC +L GT P LP+L
Sbjct: 843 QDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPSL 901
Query: 419 EMLVIVEC 426
L I +C
Sbjct: 902 ISLHIYKC 909
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/430 (40%), Positives = 239/430 (55%), Gaps = 15/430 (3%)
Query: 11 SRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGGKRFEDLY 70
+ FVMHDL++DLA+ +GD F +E + P RH S+ D F +
Sbjct: 483 TSFVMHDLMNDLAKAVSGDFCFRLED----DNIPEIPSTTRHFSFSRSQCDASVAFRSIC 538
Query: 71 DIQHLRTFLPVRLSNGFLSGYLACSIL-PKLFKLQRLRVFSLRGYHIYELPDSIGDLRYL 129
+ LRT LP S L +L P L L LR+ SL Y I LP S+ L+ L
Sbjct: 539 GAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLL 598
Query: 130 RYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEE 189
RYL+LS T I+ LPE V L NL TLLL CR L L + LI L L+ T L E
Sbjct: 599 RYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGT-PLVE 657
Query: 190 MPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLD 249
MP GI KL LQ L NFV+G+ SG+GL ELK L HL+GTL+IS+L+N+ +AK+A L
Sbjct: 658 MPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLK 717
Query: 250 GKKNLKELSLNWTCSTDGLS----STEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTW 305
K L L L WT G + A +K+VL ML+PH +L+ F I Y G FP W
Sbjct: 718 RKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKW 777
Query: 306 LGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLG-SKFYGDDSP--I 362
LGDSSF + ++ C +C +LP VGQLPSLK+L++ + + ++G F+G+++ +
Sbjct: 778 LGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGV 837
Query: 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLV 422
PF L+ L+F + W+EWI G+ FP L++L I RC L+ FPE LP+ +
Sbjct: 838 PFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVT 895
Query: 423 IVECNELSIS 432
I +C ++S
Sbjct: 896 ISDCPLRAVS 905
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 143/384 (37%), Positives = 196/384 (51%), Gaps = 42/384 (10%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
LP L K LRV +L +LP SIGDL +LRYLNL G+ +R+LP+ + KL NL TL
Sbjct: 519 LPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLD 578
Query: 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGL 216
L+ C +L L + L L +L + SL MP IG LTCL+TL FVVG+ G L
Sbjct: 579 LQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQL 638
Query: 217 RELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETE 276
EL +L +L G++KIS LE +K+ DAKEA L K NL LS++W + +E E
Sbjct: 639 GELGNL-NLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESE---E 694
Query: 277 KDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPS 336
VL+ LKPH NL I G+ G P W+ S N+V++ + C+ LP G LP
Sbjct: 695 VKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPC 754
Query: 337 LKHLTVR-GMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGV----- 390
L+ L + G + V + S P +RF L++ + W GS +G+
Sbjct: 755 LESLELHWGSADVEYVEEVDIDVHSGFP----TRIRFPSLRKLDIW-DFGSLKGLLKKEG 809
Query: 391 -ERFPKLRELHILRC-------------------SKLQGTFPE----HLPALEMLVIVEC 426
E+FP L E+ I C +K+ +FPE +L L+ L I C
Sbjct: 810 EEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTISRC 869
Query: 427 N---ELSISIASLPALCKMEIGGC 447
N EL S+ASL AL ++I C
Sbjct: 870 NNLKELPTSLASLNALKSLKIQLC 893
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 162/506 (32%), Positives = 230/506 (45%), Gaps = 75/506 (14%)
Query: 55 YIPEYF-----DGGKRFEDLYDIQH-LRTFL--------PVRLSNGFLSGYL-------- 92
Y+ +F + GK + ++D+ H L T L +R N GY+
Sbjct: 453 YLRSFFQEIEVESGKTYFKMHDLIHDLATSLFSANTSSSNIREINANYDGYMMSIGFAEV 512
Query: 93 ACSILPKLF-KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTV-IRTLPESVNKLY 150
S P L K LRV +LR ++ +LP SIGDL +LRYL+LSG IR LP+ + KL
Sbjct: 513 VSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQ 572
Query: 151 NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 210
NL TL L C L L L L +L SL P IG LTCL++L FV+GK
Sbjct: 573 NLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGC-SLTSTPPRIGLLTCLKSLSCFVIGK 631
Query: 211 DSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSS 270
G L ELK+L +L G++ I+KL+ +K DAKEA L K NL L L+W DG
Sbjct: 632 RKGHQLGELKNL-NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW--DLDGKHR 688
Query: 271 TEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPS 330
++E VL+ LKPH NL+ I G+GG + P W+ S N+V+++ C C+ LP
Sbjct: 689 YDSE----VLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPP 744
Query: 331 VGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGV 390
G+L PCLE+L E++ G
Sbjct: 745 FGEL------------------------------PCLESLELHTGSADVEYVEDNVHPG- 773
Query: 391 ERFPKLRELHILRCSKLQGTFP----EHLPALEMLVIVECNELSISIASLPALCKMEIGG 446
RFP LR+L I S L+G + P LE + C I +L ++ +++
Sbjct: 774 -RFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCP--MFVIPTLSSVKTLKVIV 830
Query: 447 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHN 506
V RS ++ L + S+ D L + + L+ LKI+ +N + S
Sbjct: 831 TDATVLRSISN-LRALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTS-- 887
Query: 507 ELLQDICSLKRLLITSCPKLQSLVAE 532
L + +LK L C L+SL E
Sbjct: 888 --LASLNALKSLKFEFCDALESLPEE 911
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 149/454 (32%), Positives = 220/454 (48%), Gaps = 49/454 (10%)
Query: 83 LSNGFLSGYLACSILPKLFK-LQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT 141
+S GF + + S P L K LRV +L + +LP SIGDL +LRYL+LS R+
Sbjct: 507 VSIGFAA--VVSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRS 564
Query: 142 LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQ 201
LPE + KL NL TL + C L L L L HL L P IG LTCL+
Sbjct: 565 LPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLK 623
Query: 202 TLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261
TL F+VG G L ELK+L +L G++ I+ LE +K+ DA EA L K NL+ LS++W
Sbjct: 624 TLGFFIVGSKKGYQLGELKNL-NLCGSISITHLERVKNDTDA-EANLSAKANLQSLSMSW 681
Query: 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFED 321
DG + E++ E VL+ LKPH NL+ I +GG +FP+W+ S +++++ +
Sbjct: 682 --DNDGPNRYESK-EVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKS 738
Query: 322 CGMCTALPSVGQLPSLKHLTVR-GMSRV-----NRLGSKFYGDDSPIPFPCLETLRFEDL 375
C C LP G+LP L++L ++ G + V + + S+F S FP L+ LR
Sbjct: 739 CKNCLCLPPFGELPCLENLELQNGSAEVEYVEEDDVHSRFSTRRS---FPSLKKLRIWFF 795
Query: 376 QEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIAS 435
+ + + +G E+FP L E+ IL C FP +
Sbjct: 796 RSLKGLM---KEEGEEKFPMLEEMAILYCPLF--VFP----------------------T 828
Query: 436 LPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNI 495
L ++ K+E+ G S+ +L + S+ L + + LE L +
Sbjct: 829 LSSVKKLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDF 888
Query: 496 QNETCIWKSHNELLQDICSLKRLLITSCPKLQSL 529
+N + S L + +LKRL I SC L+S
Sbjct: 889 KNLKDLPTS----LTSLNALKRLQIESCDSLESF 918
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 152/471 (32%), Positives = 217/471 (46%), Gaps = 50/471 (10%)
Query: 67 EDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-LQRLRVFSLRGYHIYELPDSIGD 125
+D D+ + T +S GF + S P LFK LRV +L +LP S+GD
Sbjct: 499 KDDEDMMFIVTNYKDMMSIGF--SEVVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGD 556
Query: 126 LRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTD 185
L +LRYL+LSG I +LP+ + KL NL TL L C+ L L L L +L +
Sbjct: 557 LVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHC- 615
Query: 186 SLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKE 245
L MP IG LTCL+TL FVVG+ G L EL++L +L+G + I+ LE +K+ +AKE
Sbjct: 616 PLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITHLERVKNDMEAKE 674
Query: 246 ARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTW 305
A L K NL LS++W D + E+E E VL+ LKPH NL+ I + G P W
Sbjct: 675 ANLSAKANLHSLSMSW----DRPNRYESE-EVKVLEALKPHPNLKYLEIIDFCGFCLPDW 729
Query: 306 LGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFP 365
+ S N+V++ C C+ LP G+L P
Sbjct: 730 MNHSVLKNVVSILISGCENCSCLPPFGEL------------------------------P 759
Query: 366 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG----TFPEHLPALEML 421
CLE+L +D E++ RFP LR+LHI L+G E P LE +
Sbjct: 760 CLESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEM 819
Query: 422 VIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLK 481
I +C +L ++ K+EI G S+ +L + S+ L +
Sbjct: 820 KISDCP--MFVFPTLSSVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMF 877
Query: 482 PRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAE 532
+ L L ++ ++N K L + +LK L I C L+SL E
Sbjct: 878 KNLENLIYLSVSFLEN----LKELPTSLASLNNLKCLDIRYCYALESLPEE 924
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 9/159 (5%)
Query: 49 NLRHLSYIPEYFDG--GKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRL 106
NL HL+ + YF+ G+ + ++ LR + L+N L+G + S L L +L L
Sbjct: 132 NLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLI---LANNVLTGEIPSS-LGNLSRLVNL 187
Query: 107 RVFSLRGYHIYELPDSIGDLRYLRYLNL-SGTVIRTLPESVNKLYNLHTLLLEGCRRLKK 165
+FS R + ++PDSIGDL+ LR L+L S +I +P S+ L NL L+L + + +
Sbjct: 188 ELFSNR--LVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGE 245
Query: 166 LCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC 204
+ A +GNLI+L ++ N +P+ LT L
Sbjct: 246 VPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFV 284
|
Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 137/316 (43%), Gaps = 37/316 (11%)
Query: 100 LFKLQRLRVFSL--RGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLL 157
+L+ LRV L + LP IG L +LRYLNL + LP S+ L L L +
Sbjct: 577 FIRLELLRVLDLYKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLIYLDI 636
Query: 158 EGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLR 217
C + + + + +L +L S +E+ LG+ L L+TL NF S L
Sbjct: 637 NVCTKSLFVPNCLMGMHELRYLRLPFNTS-KEIKLGLCNLVNLETLENF---STENSSLE 692
Query: 218 ELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEK 277
+L+ ++ L+ TL I ++I + A + G ++L+ LS+ + DG S + E
Sbjct: 693 DLRGMVSLR-TLTIGLFKHISK--ETLFASILGMRHLENLSIR---TPDGSSKFKRIMED 746
Query: 278 D-VLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSF-LNLVTLKFEDCGMCT-ALPSVGQL 334
VLD + +L+Q + Y P + F +L ++ + C + LP + +L
Sbjct: 747 GIVLDAI----HLKQLNLRLY----MPKLPDEQHFPSHLTSISLDGCCLVEDPLPILEKL 798
Query: 335 PSLK--HLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVER 392
LK L R G + D FP L L L EWEEWI S
Sbjct: 799 LELKEVRLDFRAFC-----GKRMVSSDG--GFPQLHRLYIWGLAEWEEWIVEEGS----- 846
Query: 393 FPKLRELHILRCSKLQ 408
P+L L I C KL+
Sbjct: 847 MPRLHTLTIWNCQKLK 862
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 109/431 (25%), Positives = 174/431 (40%), Gaps = 70/431 (16%)
Query: 10 ASRFV---MHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFP-KNLRHLSY-IPEYFDGGK 64
SRF +HD++ ++ A + F +S + S R L Y P D K
Sbjct: 490 TSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLVYQYPITLDVEK 549
Query: 65 RFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY--ELPDS 122
D LR+ + V + F G+ + +L+ LRV + + +L S
Sbjct: 550 DIND----PKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASS 605
Query: 123 IGDLRYLRYLNLSGTVIRTLPESVNKL----YNLHTLLLEGCRRLKKLCADMGNLIKLHH 178
IG L +LRYLNL + +P S+ L Y +L+ G + + +M L L
Sbjct: 606 IGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYLAL 665
Query: 179 LNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQG-TLKISKLENI 237
D + L + L L+TL NF L +L+ ++ L+ T+++ K ++
Sbjct: 666 PKDMGRKT----KLELSNLVKLETLKNF---STKNCSLEDLRGMVRLRTLTIELRKETSL 718
Query: 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKD-------VLDMLKPHKNLE 290
+ + A + G K L+ L++ T + + EA D L + P + E
Sbjct: 719 ETLA----ASIGGLKYLESLTI--TDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKE 772
Query: 291 QFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCT-ALPSVGQLPSLKHLTVRGMSRVN 349
Q FP+ +L TL + C + +P + +L LK L +R S
Sbjct: 773 Q---------HFPS--------HLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKS--- 812
Query: 350 RLGSKFYGDD---SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSK 406
F G + S FP L+ L + L+EWE+W SS P L L I C K
Sbjct: 813 -----FSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESS-----MPVLHTLDIRDCRK 862
Query: 407 LQGTFPEHLPA 417
L+ EHLP+
Sbjct: 863 LKQLPDEHLPS 873
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 109/431 (25%), Positives = 174/431 (40%), Gaps = 70/431 (16%)
Query: 10 ASRFV---MHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFP-KNLRHLSY-IPEYFDGGK 64
SRF +HD++ ++ A + F +S + S R L Y P D K
Sbjct: 490 TSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLVYQYPITLDVEK 549
Query: 65 RFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY--ELPDS 122
D LR+ + V + F G+ + +L+ LRV + + +L S
Sbjct: 550 DIND----PKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASS 605
Query: 123 IGDLRYLRYLNLSGTVIRTLPESVNKL----YNLHTLLLEGCRRLKKLCADMGNLIKLHH 178
IG L +LRYLNL + +P S+ L Y +L+ G + + +M L L
Sbjct: 606 IGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYLAL 665
Query: 179 LNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQG-TLKISKLENI 237
D + L + L L+TL NF L +L+ ++ L+ T+++ K ++
Sbjct: 666 PKDMGRKT----KLELSNLVKLETLKNF---STKNCSLEDLRGMVRLRTLTIELRKETSL 718
Query: 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKD-------VLDMLKPHKNLE 290
+ + A + G K L+ L++ T + + EA D L + P + E
Sbjct: 719 ETLA----ASIGGLKYLESLTI--TDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKE 772
Query: 291 QFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCT-ALPSVGQLPSLKHLTVRGMSRVN 349
Q FP+ +L TL + C + +P + +L LK L +R S
Sbjct: 773 Q---------HFPS--------HLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKS--- 812
Query: 350 RLGSKFYGDD---SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSK 406
F G + S FP L+ L + L+EWE+W SS P L L I C K
Sbjct: 813 -----FSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESS-----MPVLHTLDIRDCRK 862
Query: 407 LQGTFPEHLPA 417
L+ EHLP+
Sbjct: 863 LKQLPDEHLPS 873
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| 284026888 | 1424 | CC-NBS-LRR protein [Quercus suber] | 0.946 | 0.360 | 0.459 | 1e-118 | |
| 400131587 | 1388 | FB_MR5 [Malus x robusta] | 0.965 | 0.377 | 0.458 | 1e-113 | |
| 338221029 | 924 | CC-NBS-LRR resistance-like protein [Beta | 0.970 | 0.570 | 0.407 | 1e-104 | |
| 225449649 | 1418 | PREDICTED: putative disease resistance p | 0.952 | 0.364 | 0.423 | 1e-102 | |
| 359479319 | 1357 | PREDICTED: putative disease resistance p | 0.944 | 0.378 | 0.421 | 4e-99 | |
| 147798820 | 1385 | hypothetical protein VITISV_007076 [Viti | 0.944 | 0.370 | 0.421 | 7e-99 | |
| 147766392 | 1471 | hypothetical protein VITISV_007674 [Viti | 0.944 | 0.348 | 0.403 | 7e-99 | |
| 147819724 | 1481 | hypothetical protein VITISV_007111 [Viti | 0.966 | 0.354 | 0.397 | 2e-98 | |
| 225450019 | 1394 | PREDICTED: putative disease resistance p | 0.966 | 0.376 | 0.397 | 3e-98 | |
| 297736321 | 967 | unnamed protein product [Vitis vinifera] | 0.825 | 0.463 | 0.435 | 4e-98 |
| >gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/527 (45%), Positives = 330/527 (62%), Gaps = 13/527 (2%)
Query: 9 DASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGGKRFED 68
+ SRFVMHDLI+DLAQW AG YF +E + N+Q RHLS++ +DG K+FE
Sbjct: 485 NKSRFVMHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLSFVGSRYDGAKKFEA 544
Query: 69 LYDIQHLRTFLPVR---LSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGD 125
+ + +HLRTFLP+ + +LS ++ +LPKL Q LRV SL GY I LP +IGD
Sbjct: 545 ISEFKHLRTFLPLMAPYVGYSYLSYHIINQLLPKL---QNLRVLSLSGYRIVYLPQTIGD 601
Query: 126 LRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTD 185
L++LRYL+LS T +R+LP S++ LYNL TLLLE C LK L D G L L HLN ++
Sbjct: 602 LKHLRYLDLSCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLFNLRHLNIFGSN 661
Query: 186 SLEEMPLGIGKLTCLQTLCNFVVGK-DSGSGLRELKSLIHLQGTLKISKLENIKDIGDAK 244
LE MPL IG L+ LQTL NFVVGK DS +REL L+HL+GTL ISKLEN+ +A+
Sbjct: 662 LLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISKLENVTKAQEAR 721
Query: 245 EARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT 304
++ L GK++L E+ + W+ + + S + ET+ +VL+ML+P+ L++ + YGGTKFPT
Sbjct: 722 DSYLYGKQDLNEVVMEWSSNLN--ESQDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPT 779
Query: 305 WLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPF 364
W+GD SF NLV L+FE+C C +LP VGQLP LK L ++GM+ V +G +FYG+ PF
Sbjct: 780 WIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPF 839
Query: 365 PCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIV 424
LETL FED+ W WIP G + E F L +L I+RC L P+HLP+L+ LVI
Sbjct: 840 QSLETLHFEDMPRWVNWIPLGVN---EAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIH 896
Query: 425 ECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRI 484
C + +S+++LP LC + I GCK+V S+ GS S+ S + L +
Sbjct: 897 GCWNMVVSVSNLPMLCVLVIEGCKRVECESSVG-FGSPYSMAFSKISEFGNATAGLMHGV 955
Query: 485 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVA 531
K+E LKI + + T +W+ E L + L+ L I CP L S A
Sbjct: 956 SKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPA 1002
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 252/550 (45%), Positives = 341/550 (62%), Gaps = 26/550 (4%)
Query: 4 QKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQ--SFPKNLRHLSYIPEYFD 61
QKS+ S++VMHDLI DLA+WAAG+I F +E + +Q FPK RH SYI D
Sbjct: 480 QKSTKCISKYVMHDLIGDLARWAAGEICFRLEDKQNDDGEQLRCFPKA-RHSSYIRGLSD 538
Query: 62 GGKRFEDLYDIQHLRTFLPVRLSN--GFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL 119
G KRFE ++++LRTFLP+R + +LS +A +LPKL Q LRV S Y I EL
Sbjct: 539 GVKRFEVFSELKYLRTFLPLRKDSFWNYLSRQVAFDLLPKL---QYLRVLSFNCYKITEL 595
Query: 120 PDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179
PDSIGDLRYLRYL+LS T I +LP+S + LYNL TL+LEGC +LK L DM NL+ L HL
Sbjct: 596 PDSIGDLRYLRYLDLSYTDITSLPKSTSTLYNLQTLILEGCSKLKALPIDMSNLVNLRHL 655
Query: 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG---SGLRELKSLIHLQGTLKISKLEN 236
N+SN LE+MP +G+L LQ+L FVV G SG+REL+ L+HL+GTL IS+LEN
Sbjct: 656 NNSNVSLLEDMPPQLGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLRGTLCISRLEN 715
Query: 237 IKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICG 296
+ D+ DA+ A L+ K+ L L L W+ S+D ETE VLDML+PH L++ I
Sbjct: 716 VTDVEDAQRANLNCKERLDSLVLEWSHSSDT-----RETESAVLDMLQPHTKLKELTIKS 770
Query: 297 YGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFY 356
Y G +F +W+G F N+V ++ E+C C +LP +G+LP LK L +RGM+ V +G++FY
Sbjct: 771 YAGKEFSSWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHLKELYIRGMNAVESVGAEFY 830
Query: 357 GDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLP 416
G+ S +PFP LETL F D+Q W+ W+P + FP L+ L + +CSKL+G PE+L
Sbjct: 831 GECS-LPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLVRKCSKLEGKLPENLD 889
Query: 417 ALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFL 476
+L L IV+C EL +SIA+ L ++ I GCK VV +A S+ + S L
Sbjct: 890 SLASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFELLESLYLSNISELTSL 949
Query: 477 -SGPL-KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEE- 533
+G L + + + +LKIN + T K+ LLQ + SL RL I SL+ EE
Sbjct: 950 QTGELCRNGLNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLEIED----NSLLVEEL 1005
Query: 534 --EKDQQQQL 541
E D+ QL
Sbjct: 1006 GKEADELLQL 1015
|
Source: Malus x robusta Species: Malus x robusta Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|338221029|gb|AEI87114.1| CC-NBS-LRR resistance-like protein [Beta vulgaris subsp. vulgaris] | Back alignment and taxonomy information |
|---|
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 221/542 (40%), Positives = 323/542 (59%), Gaps = 15/542 (2%)
Query: 4 QKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKN-LRHLSYIPEYFDG 62
+ S D SR+ MHDL++DLAQWAAGDI ++ + P N +RHLS+I +
Sbjct: 291 EPSKIDDSRYKMHDLVNDLAQWAAGDICLRLDDMEKT--LVCGPDNRIRHLSFIRRKHET 348
Query: 63 GKRFEDLYDIQHLRTFLPVRLSN---GFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL 119
RFED DI LRTF L+ FL+ + ++PK LRV SL Y+I +L
Sbjct: 349 VTRFEDRRDITSLRTFASFSLNYCGWSFLARNIGIDLIPKF---GVLRVLSLSWYYIMKL 405
Query: 120 PDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179
PDSIGDL++LRYL++SGT ++ LPE++ L NL TLLL C L+KL L+ L HL
Sbjct: 406 PDSIGDLKHLRYLDISGTKVKELPETIGNLCNLQTLLLAHCELLEKLPTSTRKLVNLRHL 465
Query: 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKD 239
+ S T SL+EMP+GIG L L+TL F+VG G G+ ELK+L +L+G L +S+L+N+
Sbjct: 466 DISETTSLQEMPVGIGTLVNLKTLSRFIVGNVDGRGIGELKNLRNLRGLLFVSRLDNVVS 525
Query: 240 IGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGG 299
I DA + RLD K +L L + W + D + E EK++L +L+P K L+++ + YGG
Sbjct: 526 IKDALQTRLDDKLDLSGLQIEWARNFD---LRDGEFEKNLLTLLRPPKKLKEYRLNCYGG 582
Query: 300 TKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD 359
FP+WLG+ SF N+VTL +DC C LPS+G+LPSLK L + G++RV +G +FYG++
Sbjct: 583 EDFPSWLGEPSFTNMVTLTLKDCKNCRFLPSLGKLPSLKKLHIEGITRVKSVGVEFYGEN 642
Query: 360 SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALE 419
PFP L+TL F+ ++EWEEW P + E FP L +L ++ C L+ P HLP+L+
Sbjct: 643 CSKPFPSLKTLHFQRMEEWEEWFP---PRVDESFPNLEKLLVINCPSLRKELPMHLPSLK 699
Query: 420 MLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGP 479
L I +C +L +S S P L +++I C+ +V AT + + ++ S + L
Sbjct: 700 KLEISKCLQLVVSPLSFPVLRELKIRECQAIVPEPATIDISNLKTLEIFQISELICLKEE 759
Query: 480 LKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEEEKDQQQ 539
L + KL+ L I N +W L + + L L+I +CPKL E +++QQ+
Sbjct: 760 LIAQFTKLDTLHIENCMELASLWCCEKTLEEGLPLLHNLVIVNCPKLLFFPCEFQREQQR 819
Query: 540 QL 541
Q+
Sbjct: 820 QM 821
|
Source: Beta vulgaris subsp. vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 228/539 (42%), Positives = 330/539 (61%), Gaps = 22/539 (4%)
Query: 4 QKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGG 63
Q SS + SRFVMHDLI+DLAQ+ + +I F +E + + N++ +F ++RH S+ ++
Sbjct: 488 QLSSCNGSRFVMHDLINDLAQYVSEEICFHLEDSLDSNQKHTFSGSVRHSSFARCKYEVF 547
Query: 64 KRFEDLYDIQHLRTFLPVRLSNGF-----LSGYLACSILPKLFKLQRLRVFSLRGYHIYE 118
++FED Y ++LRTFL + + + L+ ++ +LPKL + LRV SL Y I E
Sbjct: 548 RKFEDFYKAKNLRTFLALPIHMQYYDFFHLTDKVSHDLLPKL---RYLRVLSLSHYEIRE 604
Query: 119 LPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178
LP+SIGDL++LRYLNLS T+I+ LP+S++ L+NL TL+L CRRL +L NLI L H
Sbjct: 605 LPNSIGDLKHLRYLNLSCTIIQELPDSLSDLHNLQTLVLFRCRRLNRLPRGFKNLINLRH 664
Query: 179 LNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIK 238
L+ ++T LE MP +GKL LQTL F+VGK G++EL L+HL+G L I L+N+
Sbjct: 665 LDIAHTHQLEVMPPQMGKLKSLQTLSKFIVGKSKELGIKELGDLLHLRGKLSILDLQNVV 724
Query: 239 DIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAET-EKDVLDMLKPHKNLEQFGICGY 297
DI DA++A L K +L+EL + W S++ ++ ET E +VL L+P+ NL++ I Y
Sbjct: 725 DIQDARDANLKDKHHLEELLMEW--SSNMFDDSQNETIELNVLHFLQPNTNLKKLTIQSY 782
Query: 298 GGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYG 357
GG FP W+GD SF +V L+ C CT LPS+G+L SLK L V+GM V +G +FYG
Sbjct: 783 GGLTFPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSVGIEFYG 842
Query: 358 DDSPI--PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHL 415
+ S PFP LE LRFED+ EWEEW E +P+LREL I C KL P HL
Sbjct: 843 EPSLCVKPFPSLEFLRFEDMPEWEEWC------SSESYPRLRELEIHHCPKLIQKLPSHL 896
Query: 416 PALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVF 475
P+L L I++C +L + SLP L + + C + + RS D L S ++ + SN F
Sbjct: 897 PSLVKLDIIDCPKLVAPLPSLPFLRDLIVAECNEAMLRSGGD-LTSLITLRLENISNLTF 955
Query: 476 LSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEEE 534
L+ L + LE L+I N + +S +++ ++ L+I CPKL L+AE++
Sbjct: 956 LNEGLVRFLGALEVLEICNCSELKFLLQS-GVGFENLSCIRHLVIVMCPKL-VLLAEDQ 1012
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479319|ref|XP_003632256.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 227/538 (42%), Positives = 315/538 (58%), Gaps = 25/538 (4%)
Query: 4 QKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGG 63
Q+S D S ++MH+L+ +L+Q+ +G+ ME K Q P+ +RH SY+ E +DG
Sbjct: 487 QQSGRDKSLYLMHELMHELSQFVSGEFCLRME----AGKHQKNPEKVRHSSYLRETYDGS 542
Query: 64 KRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDS 122
++F+ L + +LRTFLP+ +S + YL +L + L+ LRV SL Y I +LPDS
Sbjct: 543 EKFDFLREAYNLRTFLPLNMSFEVEACYLTHKVLVHMLPTLKCLRVLSLSHYQITDLPDS 602
Query: 123 IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182
IG+LR+LRYL++S T I+ + ESV+ L NL TL+L C + +L +MGNLI L HL +S
Sbjct: 603 IGNLRHLRYLDISYTAIKKISESVSTLVNLQTLVLSHCYHMNELPKNMGNLINLRHLENS 662
Query: 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGD 242
T SL+ MP+ + KL LQTL FVVGK GS +REL+ L L GTL I LEN+ D D
Sbjct: 663 GT-SLKGMPMEMKKLKNLQTLSAFVVGKHYGSSIRELRDLFCLGGTLSILNLENVVDAVD 721
Query: 243 AKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF 302
A+EA + KKNL EL L W D + +++ E VL+ L+PHK L++ I Y G+ F
Sbjct: 722 AREANVKDKKNLDELVLKWK-DNDNNIAVDSQNEASVLEHLQPHKKLKKLTIDCYSGSNF 780
Query: 303 PTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD--S 360
P WLG+ SF N+V L C C LP +GQLP+LK L+V V R+G++FYG+D S
Sbjct: 781 PDWLGEPSFTNMVFLHLSKCKNCPYLPPLGQLPNLKSLSVVHFDAVKRVGAEFYGNDSSS 840
Query: 361 PIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEM 420
PF LETL FE++ EWEEW+P QG E FP L++L I +C KL P L +L
Sbjct: 841 AKPFGSLETLMFEEMPEWEEWVPL-RIQG-EEFPCLQKLCIRKCPKLTRDLPCRLSSLRQ 898
Query: 421 LVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPL 480
L I EC +L +S+ ++P++C++++ C VV SA HL S +S+ N L G
Sbjct: 899 LEISECRQLVVSLPTVPSICEVKLHECDNVVLESAF-HLTSVSSLSASKIFNMTHLPGGQ 957
Query: 481 KP---------RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSL 529
+ L EL + N K +L + SLKRL I CP L SL
Sbjct: 958 ITTSSIQVGLQHLRSLVELHLCNCPR----LKELPPILHMLTSLKRLEIRQCPSLYSL 1011
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147798820|emb|CAN67609.1| hypothetical protein VITISV_007076 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 227/538 (42%), Positives = 315/538 (58%), Gaps = 25/538 (4%)
Query: 4 QKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGG 63
Q+S D S ++MH+L+ +L+Q+ +G+ ME K Q P+ +RH SY+ E +DG
Sbjct: 487 QQSGRDKSLYLMHELMHELSQFVSGEFCLRME----AGKHQKNPEKVRHSSYLRETYDGS 542
Query: 64 KRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDS 122
++F+ L + +LRTFLP+ +S + YL +L + L+ LRV SL Y I +LPDS
Sbjct: 543 EKFDFLREAYNLRTFLPLNMSFEVEACYLTHKVLVHMLPTLKCLRVLSLSHYQITDLPDS 602
Query: 123 IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182
IG+LR+LRYL++S T I+ + ESV+ L NL TL+L C + +L +MGNLI L HL +S
Sbjct: 603 IGNLRHLRYLDISYTAIKKISESVSTLVNLQTLVLSHCYHMNELPKNMGNLINLRHLENS 662
Query: 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGD 242
T SL+ MP+ + KL LQTL FVVGK GS +REL+ L L GTL I LEN+ D D
Sbjct: 663 GT-SLKGMPMEMKKLKNLQTLSAFVVGKHYGSSIRELRDLFCLGGTLSILNLENVVDAVD 721
Query: 243 AKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF 302
A+EA + KKNL EL L W D + +++ E VL+ L+PHK L++ I Y G+ F
Sbjct: 722 AREANVKDKKNLDELVLKWK-DNDNNIAVDSQNEASVLEHLQPHKKLKKLTIDCYSGSNF 780
Query: 303 PTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD--S 360
P WLG+ SF N+V L C C LP +GQLP+LK L+V V R+G++FYG+D S
Sbjct: 781 PDWLGEPSFTNMVFLHLSKCKNCPYLPPLGQLPNLKSLSVVHFDAVKRVGAEFYGNDSSS 840
Query: 361 PIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEM 420
PF LETL FE++ EWEEW+P QG E FP L++L I +C KL P L +L
Sbjct: 841 AKPFGSLETLMFEEMPEWEEWVPL-RIQG-EEFPCLQKLCIRKCPKLTRDLPCRLSSLRQ 898
Query: 421 LVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPL 480
L I EC +L +S+ ++P++C++++ C VV SA HL S +S+ N L G
Sbjct: 899 LEISECRQLVVSLPTVPSICEVKLHECDNVVLESAF-HLTSVSSLSASKIFNMTHLPGGQ 957
Query: 481 KP---------RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSL 529
+ L EL + N K +L + SLKRL I CP L SL
Sbjct: 958 ITTSSIQVGLQHLRSLVELHLCNCPR----LKELPPILHMLTSLKRLEIRQCPSLYSL 1011
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766392|emb|CAN67818.1| hypothetical protein VITISV_007674 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 214/530 (40%), Positives = 316/530 (59%), Gaps = 17/530 (3%)
Query: 9 DASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGGKRFED 68
+ S+FVMHDL++DLA++ G+I F++E E N+QQ+ K RH S+I +D K+FE
Sbjct: 499 NKSQFVMHDLVNDLAKFVGGEICFSLEENLEGNQQQTISKKARHSSFIRGSYDVFKKFEA 558
Query: 69 LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDSIGDLR 127
Y +++LRTF+ + + + +L+ +L L KL+RLRV SL Y I E+P SIGDL+
Sbjct: 559 FYGMENLRTFIALPIDASWGYDWLSNKVLEGLMPKLRRLRVLSLSTYRISEIPSSIGDLK 618
Query: 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSL 187
+LRYLNLS T ++ LP+S+ LYNL TL+L C +L +L + NL L HL+ +NT+ L
Sbjct: 619 HLRYLNLSRTKVKWLPDSLGNLYNLETLILSNCSKLIRLALSIENLNNLRHLDVTNTN-L 677
Query: 188 EEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEAR 247
EEMPL I KL LQ L F+VGKD+G ++EL+++ HLQ L IS LEN+ ++ DA++A
Sbjct: 678 EEMPLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQDGLCISNLENVANVQDARDAS 737
Query: 248 LDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLG 307
L+ K+ L+EL++ W+ D S A + DVLD L+PH NL + I YGG +FP W+G
Sbjct: 738 LNKKEKLEELTIEWSAGLD--DSHNARNQIDVLDSLQPHFNLNKLKIGYYGGPEFPPWIG 795
Query: 308 DSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD--SPIPFP 365
D SF +V + +C CT+LP +G LP LKH+ + G++ V +G +FYG+ PFP
Sbjct: 796 DVSFSKMVDINLVNCRNCTSLPCLGWLPMLKHVRIEGLNEVKIVGREFYGETCLPNKPFP 855
Query: 366 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVE 425
LE+L F + +WE+W S E +P L L I+ C KL P +LP+L L I
Sbjct: 856 SLESLSFSAMSQWEDW---ESPSLSEPYPCLLHLEIINCPKLIKKLPTNLPSLVHLSIDT 912
Query: 426 CNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIP 485
C + + LP+L K+ +G C + V RS + L S + L +
Sbjct: 913 CPQWVSPLERLPSLSKLRVGDCNEAVLRSGLE-LPSLTELRIERIVGLTRLHEGCMQLLS 971
Query: 486 KLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEEEK 535
L+ L I+ TC+W++ + +Q +L +SCP+L SL E+EK
Sbjct: 972 GLQVLDIDRCDELTCLWENGFDGIQ------QLQTSSCPELVSL-GEKEK 1014
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147819724|emb|CAN69227.1| hypothetical protein VITISV_007111 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 215/541 (39%), Positives = 319/541 (58%), Gaps = 16/541 (2%)
Query: 4 QKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGG 63
Q SS++ S+FVMHDL++DLA++ G+I F++E E N+QQ+ K RH S+I +D
Sbjct: 494 QPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEENLEGNQQQTISKKARHSSFIRGRYDVF 553
Query: 64 KRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDS 122
K+FE Y +++LRTF+ + + + +L+ +L L KLQRLRV SL GY I E+P S
Sbjct: 554 KKFEAFYGMEYLRTFIALPIDASWRCNWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSS 613
Query: 123 IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182
+GDL++LRYLNLS T ++ LP+S+ L+NL TL+L C RL +L + NL L HL+ +
Sbjct: 614 VGDLKHLRYLNLSETGVKRLPDSLGNLHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVT 673
Query: 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGD 242
NT+ LEEM L I KL LQ L F+VGKD+G ++EL+++ HLQG L IS LEN+ ++ D
Sbjct: 674 NTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGGLCISNLENVANVQD 732
Query: 243 AKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF 302
A++A L+ K+ L+EL++ W+ D S A + DVLD L+PH NL + I YGG +F
Sbjct: 733 ARDASLNKKQKLEELTIEWSAGLD--DSHNARNQIDVLDSLQPHFNLNKLKIEYYGGPEF 790
Query: 303 PTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD--S 360
P W+GD SF +V + +C CT+LP +G LP LKH+ + G+ V +G +FYG+
Sbjct: 791 PRWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLP 850
Query: 361 PIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEM 420
PFP LE+L F D+ +WE+W S E +P L L I+ C KL P +LP+L
Sbjct: 851 NKPFPSLESLSFSDMSQWEDW---ESPSLSEPYPCLLYLEIVNCPKLIKKLPTYLPSLVH 907
Query: 421 LVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPL 480
L I C L + LP+L K+ + C + V RS + L S + L
Sbjct: 908 LSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRSGLE-LPSLTELGILRMVGLTRLHEWC 966
Query: 481 KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEEEKDQQQQ 540
+ L+ L I+ C+W++ L++L ++C +L SL +E+ + +
Sbjct: 967 MQLLSGLQVLDIDECDELMCLWEN------GFAGLQQLQTSNCLELVSLGKKEKHELPSK 1020
Query: 541 L 541
L
Sbjct: 1021 L 1021
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450019|ref|XP_002272632.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] gi|451798996|gb|AGF69196.1| disease resistance protein At3g14460-like protein 3 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 215/541 (39%), Positives = 319/541 (58%), Gaps = 16/541 (2%)
Query: 4 QKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGG 63
Q SS++ S+FVMHDL++DLA++ G+I F++E E N+QQ+ K RH S+I +D
Sbjct: 494 QPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEENLEGNQQQTISKKARHSSFIRGRYDVF 553
Query: 64 KRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDS 122
K+FE Y +++LRTF+ + + + +L+ +L L KLQRLRV SL GY I E+P S
Sbjct: 554 KKFEAFYGMEYLRTFIALPIDASWRCNWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSS 613
Query: 123 IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182
+GDL++LRYLNLS T ++ LP+S+ L+NL TL+L C RL +L + NL L HL+ +
Sbjct: 614 VGDLKHLRYLNLSETGVKRLPDSLGNLHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVT 673
Query: 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGD 242
NT+ LEEM L I KL LQ L F+VGKD+G ++EL+++ HLQG L IS LEN+ ++ D
Sbjct: 674 NTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGGLCISNLENVANVQD 732
Query: 243 AKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF 302
A++A L+ K+ L+EL++ W+ D S A + DVLD L+PH NL + I YGG +F
Sbjct: 733 ARDASLNKKQKLEELTIEWSAGLD--DSHNARNQIDVLDSLQPHFNLNKLKIEYYGGPEF 790
Query: 303 PTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD--S 360
P W+GD SF +V + +C CT+LP +G LP LKH+ + G+ V +G +FYG+
Sbjct: 791 PRWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLP 850
Query: 361 PIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEM 420
PFP LE+L F D+ +WE+W S E +P L L I+ C KL P +LP+L
Sbjct: 851 NKPFPSLESLSFSDMSQWEDW---ESPSLSEPYPCLLYLEIVNCPKLIKKLPTYLPSLVH 907
Query: 421 LVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPL 480
L I C L + LP+L K+ + C + V RS + L S + L
Sbjct: 908 LSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRSGLE-LPSLTELGILRMVGLTRLHEWC 966
Query: 481 KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEEEKDQQQQ 540
+ L+ L I+ C+W++ L++L ++C +L SL +E+ + +
Sbjct: 967 MQLLSGLQVLDIDECDELMCLWEN------GFAGLQQLQTSNCLELVSLGKKEKHELPSK 1020
Query: 541 L 541
L
Sbjct: 1021 L 1021
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736321|emb|CBI24959.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 199/457 (43%), Positives = 287/457 (62%), Gaps = 9/457 (1%)
Query: 4 QKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGG 63
Q SS++ S+FVMHDL++DLA++ G+I F++E E N+QQ+ K RH S+I +D
Sbjct: 398 QPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEENLEGNQQQTISKKARHSSFIRGRYDVF 457
Query: 64 KRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDS 122
K+FE Y +++LRTF+ + + + +L+ +L L KLQRLRV SL GY I E+P S
Sbjct: 458 KKFEAFYGMEYLRTFIALPIDASWRCNWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSS 517
Query: 123 IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182
+GDL++LRYLNLS T ++ LP+S+ L+NL TL+L C RL +L + NL L HL+ +
Sbjct: 518 VGDLKHLRYLNLSETGVKRLPDSLGNLHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVT 577
Query: 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGD 242
NT+ LEEM L I KL LQ L F+VGKD+G ++EL+++ HLQG L IS LEN+ ++ D
Sbjct: 578 NTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGGLCISNLENVANVQD 636
Query: 243 AKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF 302
A++A L+ K+ L+EL++ W+ D S A + DVLD L+PH NL + I YGG +F
Sbjct: 637 ARDASLNKKQKLEELTIEWSAGLD--DSHNARNQIDVLDSLQPHFNLNKLKIEYYGGPEF 694
Query: 303 PTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD--S 360
P W+GD SF +V + +C CT+LP +G LP LKH+ + G+ V +G +FYG+
Sbjct: 695 PRWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLP 754
Query: 361 PIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEM 420
PFP LE+L F D+ +WE+W S E +P L L I+ C KL P +LP+L
Sbjct: 755 NKPFPSLESLSFSDMSQWEDW---ESPSLSEPYPCLLYLEIVNCPKLIKKLPTYLPSLVH 811
Query: 421 LVIVECNELSISIASLPALCKMEIGGCKKVVWRSATD 457
L I C L + LP+L K+ + C + V RS +
Sbjct: 812 LSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRSGLE 848
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.952 | 0.490 | 0.369 | 3.4e-77 | |
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.760 | 0.290 | 0.413 | 6.6e-77 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.502 | 0.151 | 0.286 | 7.3e-17 | |
| TAIR|locus:2205804 | 1556 | AT1G27180 [Arabidopsis thalian | 0.298 | 0.104 | 0.364 | 6e-13 | |
| TAIR|locus:2205824 | 1384 | AT1G27170 [Arabidopsis thalian | 0.611 | 0.239 | 0.284 | 1.3e-09 | |
| TAIR|locus:2053405 | 1215 | AT2G14080 [Arabidopsis thalian | 0.756 | 0.338 | 0.238 | 2.5e-10 | |
| FB|FBgn0033984 | 849 | Lap1 "Lap1" [Drosophila melano | 0.488 | 0.312 | 0.296 | 1.5e-09 | |
| TAIR|locus:2117149 | 1201 | AT4G19050 [Arabidopsis thalian | 0.329 | 0.149 | 0.292 | 1.8e-09 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.631 | 0.288 | 0.25 | 6.4e-09 | |
| TAIR|locus:2131689 | 919 | AT4G27220 [Arabidopsis thalian | 0.265 | 0.156 | 0.318 | 6.5e-09 |
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 203/550 (36%), Positives = 306/550 (55%)
Query: 11 SRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGGKRFEDLY 70
+R++MHD I++LAQ+A+G+ F+ ++ Q S + R+LSY+ + + FE L
Sbjct: 488 TRYIMHDFINELAQFASGE--FSSKFEDGCKLQVS--ERTRYLSYLRDNYAEPMEFEALR 543
Query: 71 DIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-LQRLRVFSLRGYHIYELP-DSIGDLRY 128
+++ LRTFLP+ L+N S L + KL L RLRV SL Y I LP D ++ +
Sbjct: 544 EVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISH 603
Query: 129 LRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLE 188
R+L+LS T + LP+S+ +YNL TLLL C LK+L D+ NLI L +L+ T L
Sbjct: 604 ARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLR 662
Query: 189 EMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARL 248
+MP G+L LQTL F V GS + EL L L G LKI +L+ + D+ DA EA L
Sbjct: 663 QMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANL 722
Query: 249 DGKKNLKELSLNW-TCSTDGLSSTE---AETEKDVLDMLKPHKNLEQFGICGYGGTKFPT 304
+ KK+L+E+ W T S+ ++T + E +V + L+PH+++E+ I Y G +FP
Sbjct: 723 NSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPD 782
Query: 305 WLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPI-- 362
WL D SF +V ++ +C CT+LPS+GQLP LK L + GM + +G KFY D +
Sbjct: 783 WLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRD 842
Query: 363 ----PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPAL 418
PF LETLRF++L +W+EW+ ++G + FP L++L ILRC +L GT P LP+L
Sbjct: 843 QDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPSL 901
Query: 419 EMLVIVECNELSISIA----SLPALCKMEI-GGCKKVVWRSATDHLGSQNSV-VCRDTS- 471
L I +C L S L + I C +V + +H + + + V + TS
Sbjct: 902 ISLHIYKCGLLDFQPDHHEYSYRNLQTLSIKSSCDTLV-KFPLNHFANLDKLEVDQCTSL 960
Query: 472 NQVFLSGPLKPRIPK-LEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLV 530
+ LS R P L L+IN+ QN + K N L Q++ ++ IT+C L+ +
Sbjct: 961 YSLELSNE-HLRGPNALRNLRINDCQNLQLLPKL-NALPQNL----QVTITNCRYLRQPM 1014
Query: 531 AEEEKDQQQQ 540
++ + Q
Sbjct: 1015 EQQPQYHHPQ 1024
|
|
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 177/428 (41%), Positives = 240/428 (56%)
Query: 13 FVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGGKRFEDLYDI 72
FVMHDL++DLA+ +GD F +E + N + P RH S+ D F +
Sbjct: 485 FVMHDLMNDLAKAVSGDFCFRLE---DDNIPE-IPSTTRHFSFSRSQCDASVAFRSICGA 540
Query: 73 QHLRTFLPVRLSNGFLSGYLACSIL-PKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRY 131
+ LRT LP S L +L P L L LR+ SL Y I LP S+ L+ LRY
Sbjct: 541 EFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRY 600
Query: 132 LNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP 191
L+LS T I+ LPE V L NL TLLL CR L L + LI L L+ T L EMP
Sbjct: 601 LDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVEMP 659
Query: 192 LGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGK 251
GI KL LQ L NFV+G+ SG+GL ELK L HL+GTL+IS+L+N+ +AK+A L K
Sbjct: 660 PGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRK 719
Query: 252 KNLKELSLNWTCSTDGL--SSTEAET--EKDVLDMLKPHKNLEQFGICGYGGTKFPTWLG 307
L L L WT G S A +K+VL ML+PH +L+ F I Y G FP WLG
Sbjct: 720 PFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLG 779
Query: 308 DSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFY-GDDSP--IPF 364
DSSF + ++ C +C +LP VGQLPSLK+L++ + + ++G F+ G+++ +PF
Sbjct: 780 DSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPF 839
Query: 365 PCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIV 424
L+ L+F + W+EWI G+ FP L++L I RC L+ FPE LP+ + I
Sbjct: 840 QSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVTIS 897
Query: 425 ECNELSIS 432
+C ++S
Sbjct: 898 DCPLRAVS 905
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 7.3e-17, Sum P(3) = 7.3e-17
Identities = 85/297 (28%), Positives = 150/297 (50%)
Query: 1 REVQKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYF 60
++V+ + + FVMHDL+ DLAQ + Y T++ SE + ++RHLS + +
Sbjct: 613 QQVESTRFSSEYFVMHDLMHDLAQKVSQTEYATID-GSECTE---LAPSIRHLSIVTDSA 668
Query: 61 DGGKRFEDL-----YDIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-----LQRLRVFS 110
+++ ++ ++ + ++ +L + L G K FK Q LR+
Sbjct: 669 YRKEKYRNISRNEVFEKRLMKVKSRSKLRSLVLIGQYDSHFF-KYFKDAFKEAQHLRLLQ 727
Query: 111 LRGYHIYE--LPDSIGDLRYLRYLNL-SGTVIRTLPESVNKLYNLHTLLLEGCR-RLKKL 166
+ + S+ + +LRYL + + RTLP S+ K Y+L L + G R + ++
Sbjct: 728 ITATYADSDSFLSSLVNSTHLRYLKIVTEESGRTLPRSLRKYYHLQVLDI-GYRFGIPRI 786
Query: 167 CADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKD-SGSGLRELKSLIHL 225
D+ NL+ L HL D + IGK+T LQ L NF+V + SG + +LKS+ L
Sbjct: 787 SNDINNLLSLRHL--VAYDEVCSSIANIGKMTSLQELGNFIVQNNLSGFEVTQLKSMNKL 844
Query: 226 QGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDM 282
L +S+LEN++ +A A+L K++L++L L+W + +G S E+ ++ DM
Sbjct: 845 V-QLSVSQLENVRTQEEACGAKLKDKQHLEKLHLSWKDAWNGYDSDESYEDEYGSDM 900
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| TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 186 (70.5 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 63/173 (36%), Positives = 84/173 (48%)
Query: 93 ACSILP-KLFKLQRLRVFSLRGYH-IYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLY 150
A S LP +F+LQ+L SL G I ELP +G L L L L T +R LP S+ L
Sbjct: 949 AISNLPYSIFRLQKLEKLSLMGCRSIEELPSCVGYLTSLEDLYLDDTALRNLPSSIGDLK 1008
Query: 151 NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL----CNF 206
NL L L C L + + L+ L L N ++EE+P+ G L CL L C F
Sbjct: 1009 NLQKLHLMRCTSLSTIPETINKLMSLKELF-INGSAVEELPIETGSLLCLTDLSAGDCKF 1067
Query: 207 VVGKDSGSGLRELKSLIHLQ-GTLKISKL-ENIKDIGDAKEARLDGKKNLKEL 257
+ K S + L SL+ LQ + I L E I D+ ++ L K+LK L
Sbjct: 1068 L--KQVPSSIGGLNSLLQLQLDSTPIEALPEEIGDLHFIRQLDLRNCKSLKAL 1118
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| TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 105/369 (28%), Positives = 159/369 (43%)
Query: 97 LPK-LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTL 155
LP+ + +LQ L + SLRG I ELP IG L+ L L L T ++ LP S+ L NL L
Sbjct: 780 LPESINRLQNLEILSLRGCKIQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDL 839
Query: 156 LLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL----CNFVVGKD 211
L C L K+ + L L L N ++EE+PL L L C F+ K
Sbjct: 840 HLVRCTSLSKIPDSINELKSLKKLF-INGSAVEELPLKPSSLPSLYDFSAGDCKFL--KQ 896
Query: 212 SGSGLRELKSLIHLQ-GTLKISKL-ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLS 269
S + L SL+ LQ + I L E I + +E L K LK L + D L
Sbjct: 897 VPSSIGRLNSLLQLQLSSTPIEALPEEIGALHFIRELELRNCKFLKFLPKS-IGDMDTLY 955
Query: 270 STEAETEKDVLDMLKPHKNLEQFGICGYGGTKF----PTWLGDSSFLNLVTLKFEDCGMC 325
S E ++ ++ + LE+ K P GD L+ + +K E +
Sbjct: 956 SLNLEGS-NIEELPEEFGKLEKLVELRMSNCKMLKRLPESFGDLKSLHRLYMK-ET--LV 1011
Query: 326 TALP-SVGQLPSLKHLTV--RGMSRVNRLGSKFYG-DDSP----IPFPCLETLRFEDLQE 377
+ LP S G L +L L + + + R++ S G + P +P + L+ E+L
Sbjct: 1012 SELPESFGNLSNLMVLEMLKKPLFRISE--SNVPGTSEEPRFVEVPNSFSKLLKLEELDA 1069
Query: 378 WEEWIPHGS-SQGVERFPKLRELHILR--CSKLQGTFPEHLPALEMLVIVECNELSISIA 434
W G +E+ L +L++ L + + L L+ L + +C EL +
Sbjct: 1070 CS-WRISGKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVK-LSNLQELSLRDCRELK-RLP 1126
Query: 435 SLPALCKME 443
LP CK+E
Sbjct: 1127 PLP--CKLE 1133
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| TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 107/448 (23%), Positives = 194/448 (43%)
Query: 30 IYFTMEYTSEV-NKQQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFL 88
IY + +V N + + + +L ++ + G F + + H T++ +L L
Sbjct: 578 IYLDLHRNDDVFNISEKAFEGMSNLQFL-RVKNFGNLFPAIVCLPHCLTYISRKLR--LL 634
Query: 89 SG-YLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNL-SGTVIRTLPESV 146
Y + P F + L ++ G + +L + I LR L+ ++L S ++ LP+ +
Sbjct: 635 DWMYFPMTCFPSKFNPEFLVELNMWGSKLEKLWEEIQPLRNLKRMDLFSSKNLKELPD-L 693
Query: 147 NKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL--- 203
+ NL L L GC L +L +GN KL L S SL E+P IG LQT+
Sbjct: 694 SSATNLEVLNLNGCSSLVELPFSIGNATKLLKLELSGCSSLLELPSSIGNAINLQTIDFS 753
Query: 204 -CNFVVGKDSGSG-LRELKSLIHLQGTLKISKL-ENIKDIGDAKEARLDGKKNLKEL--S 258
C +V S G LK L L + +L +I + + K+ L +LKEL S
Sbjct: 754 HCENLVELPSSIGNATNLKEL-DLSCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSS 812
Query: 259 LNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGG-TKFPTWLGDSSFLNLVTL 317
+ + L T + + + NLE+ + G + P+++G ++ L ++ L
Sbjct: 813 IGNCTNLKELHLTCCSSLIKLPSSIGNAINLEKLILAGCESLVELPSFIGKATNLKILNL 872
Query: 318 KFEDCGMCTALPS-VGQLPSLKHLTVRGMSRVNRLGSKF---YGDDSPIPFPCLETLRFE 373
+ C LPS +G L L L +RG ++ L + + ++ + C+ F
Sbjct: 873 GYLSC--LVELPSFIGNLHKLSELRLRGCKKLQVLPTNINLEFLNELDLT-DCILLKTFP 929
Query: 374 DLQEWEEWIPHGSSQGVERFPK-LRELHILRCSKLQGTFPEHLP----ALEMLVIVECNE 428
+ + + H +E P LR R LQ + E+L LE + ++E ++
Sbjct: 930 VISTNIKRL-HLRGTQIEEVPSSLRSWP--RLEDLQMLYSENLSEFSHVLERITVLELSD 986
Query: 429 LSIS-----IASLPALCKMEIGGCKKVV 451
++I + + L ++++ GC K+V
Sbjct: 987 INIREMTPWLNRITRLRRLKLSGCGKLV 1014
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| FB|FBgn0033984 Lap1 "Lap1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 174 (66.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 86/290 (29%), Positives = 139/290 (47%)
Query: 73 QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYL 132
QH RT + LS L ++ P+LF Q LRV + ++ +P +IG LR L++L
Sbjct: 37 QHERTLEELYLSTTRLQ-----ALPPQLFYCQGLRVLHVNSNNLESIPQAIGSLRQLQHL 91
Query: 133 NLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL 192
+L+ +I +PE + +L L L C L++L + +LI L L + T LE +P
Sbjct: 92 DLNRNLIVNVPEEIKSCKHLTHLDLS-CNSLQRLPDAITSLISLQELLLNET-YLEFLPA 149
Query: 193 GIGKLTCLQTLCNFVVGKDSGSGL-RELKSLIHLQ----GTLKISKL-ENIKDIGDAKEA 246
G+L L+ L + ++ L + + LI+LQ G + ++L E + ++ +E
Sbjct: 150 NFGRLVNLRIL---ELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVVGELKSLREL 206
Query: 247 RLDGKKNLKELSLNWTCSTDGLSSTEAETEK-DVLDM-LKPHKNLEQFGICGYGGTKFPT 304
+D + ++ +S N D L EA D L L +N+E IC FP
Sbjct: 207 WIDFNQ-IRRVSANIGKLRD-LQHFEANGNLLDTLPSELSNWRNVEVLSICSNSLEAFPF 264
Query: 305 WLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGS 353
+G +LVT K E G+ T LP S+ L L+ L V +++ RL S
Sbjct: 265 SVG--MLKSLVTFKCESNGL-TELPDSISYLEQLEEL-VLSHNKLIRLPS 310
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| TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 57/195 (29%), Positives = 94/195 (48%)
Query: 94 CSI---LPKLFKLQRLRVFSLRG-YHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKL 149
CS+ LP + KL L VF + G + + S G++ YL +NLS T + LP+ +++L
Sbjct: 712 CSLIEELPSIEKLTHLEVFDVSGCIKLKNINGSFGEMSYLHEVNLSETNLSELPDKISEL 771
Query: 150 YNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQ--TLCNFV 207
NL L++ C +LK L ++ L L + S LE + L+CL L
Sbjct: 772 SNLKELIIRKCSKLKTL-PNLEKLTNLEIFDVSGCTELETIEGSFENLSCLHKVNLSETN 830
Query: 208 VGK--DSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKEL-----SLN 260
+G+ + S L LK LI L+ K+ L N++ + + G NL ++ S++
Sbjct: 831 LGELPNKISELSNLKELI-LRNCSKLKALPNLEKLTHLVIFDVSGCTNLDKIEESFESMS 889
Query: 261 WTCSTDGLSSTEAET 275
+ C + LS T +T
Sbjct: 890 YLCEVN-LSGTNLKT 903
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| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 95/380 (25%), Positives = 167/380 (43%)
Query: 92 LACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTV-IRTLPESVNKLY 150
L C LP F + L ++R + +L D +R L++++LS V ++ LP+ +
Sbjct: 624 LTC--LPPKFNPEFLVKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPD-FSTAT 680
Query: 151 NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL----CNF 206
NL L L C L +L + +GN L L+ + SL ++P IG LT L+ L C+
Sbjct: 681 NLQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSS 740
Query: 207 VVGKDSGSG-LRELKSLIHLQGTLKISKL-ENIKDIGDAKEARLDGKKNLKEL--SLNWT 262
+V S G + LK L +L G + ++ +I +I + K+ DG +L +L S+
Sbjct: 741 LVKLPSSFGNVTSLKEL-NLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNN 799
Query: 263 CSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICG-YGGTKFPTWLGDSSFLNLVTLKFED 321
+ L + + + LE + G K P+ +G+ +NL +L D
Sbjct: 800 TNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPS-IGN--VINLQSLYLSD 856
Query: 322 CGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEE 380
C LP ++ +L L + G S + L S + + L++L +E
Sbjct: 857 CSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITN------LQSLYLNGCSSLKE 910
Query: 381 WIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNEL-SISIASL 436
+P VE L+ L +++CS L P + L L + C+ L +++ S
Sbjct: 911 -LP----SLVENAINLQSLSLMKCSSLV-ELPSSIWRISNLSYLDVSNCSSLLELNLVSH 964
Query: 437 PALCK---MEIGGCKKVVWR 453
P + ++ G C+ +V R
Sbjct: 965 PVVPDSLILDAGDCESLVQR 984
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| TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 51/160 (31%), Positives = 89/160 (55%)
Query: 108 VFSLRGY-HIYELPDS-IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKK 165
V L+G H+ E+P+ + LR L+LSG IRTLP+S + L++L +L+L C++L+
Sbjct: 497 VLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRN 556
Query: 166 LCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHL 225
L + +L+KL L D + ++ E+P G+ L+ L+ +C S +L+S+
Sbjct: 557 L-PSLESLVKLQFL-DLHESAIRELPRGLEALSSLRYICV--------SNTYQLQSIP-- 604
Query: 226 QGT-LKISKLENIKDIGDAKEARLDGKKNLKELSLNW-TC 263
GT L++S LE + G A + G++ + +L+ TC
Sbjct: 605 AGTILQLSSLEVLDMAGSAYSWGIKGEEREGQATLDEVTC 644
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00010803001 | SubName- Full=Chromosome chr13 scaffold_286, whole genome shotgun sequence; (1418 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 543 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-05 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 103/420 (24%), Positives = 174/420 (41%), Gaps = 68/420 (16%)
Query: 30 IYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQ-HLR---TFLPVRLSN 85
I ++ E++ ++ K +R+L ++ Y K+++ +++ HL +LP +L
Sbjct: 537 ITLDIDEIDELHIHENAFKGMRNLLFLKFY---TKKWDQKKEVRWHLPEGFDYLPPKLRL 593
Query: 86 GFLSGY-LACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPE 144
Y L C +P F+ + L ++G + +L D + L LR ++L G+ + L E
Sbjct: 594 LRWDKYPLRC--MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGS--KNLKE 649
Query: 145 --SVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQT 202
++ NL TL L C L +L + + L KL L+ S ++LE +P GI L++
Sbjct: 650 IPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKS 705
Query: 203 LCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262
L + + SG LKS + + L+ RL+ NL EL L
Sbjct: 706 L-----YRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLE---NLDELILCEM 757
Query: 263 CSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLG-DSSFLNLVTLK--- 318
S + T ++ ML P +L + + + P+ + SS NL L+
Sbjct: 758 KSEKLWERVQPLTP--LMTMLSP--SLTRLFL-----SDIPSLVELPSSIQNLHKLEHLE 808
Query: 319 FEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLET------LRF 372
E+C LP+ L SL+ L + G SR+ FP + T L
Sbjct: 809 IENCINLETLPTGINLESLESLDLSGCSRLR-------------TFPDISTNISDLNLSR 855
Query: 373 EDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE--HLPALEMLVIVECNELS 430
++E WI E+F L L + C+ LQ L LE + +C L+
Sbjct: 856 TGIEEVPWWI--------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907
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syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 8/161 (4%)
Query: 68 DLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127
++ DI L L L LS S+ L L L+ L + +LP + +L
Sbjct: 127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186
Query: 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSL 187
L L+LSG I LP + L L L L + +L + + NL L L SN L
Sbjct: 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSNN-KL 244
Query: 188 EEMPLGIGKLTCLQTL---CNFVVGKDSGSGLRELKSLIHL 225
E++P IG L+ L+TL N + S S L L +L L
Sbjct: 245 EDLPESIGNLSNLETLDLSNNQIS---SISSLGSLTNLREL 282
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Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.96 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.94 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.91 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.9 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.87 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.86 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.67 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.67 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.63 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.61 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.55 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.48 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.47 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.45 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.38 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.26 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.22 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.04 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.99 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.9 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.87 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.84 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.79 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.77 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.72 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.7 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.67 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.64 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.63 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.62 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.57 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.52 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.49 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.47 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.3 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.29 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.28 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.19 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.16 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.14 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.09 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.97 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.97 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.96 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.95 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.9 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.85 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.78 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.73 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.63 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.59 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.57 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.51 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.49 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.83 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.71 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.31 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.25 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.99 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.71 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.28 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.1 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 94.1 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.59 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.2 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.37 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 92.11 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 92.11 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 88.87 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.05 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.05 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=316.85 Aligned_cols=457 Identities=17% Similarity=0.210 Sum_probs=265.6
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc-ccCccccC
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIGD 125 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~~~~ 125 (543)
..+++.|+++.|.+.+... ..+..+++|+.|. +++|.+.+.+|..++. .+++|++|++++|.+. .+|. +.
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~---Ls~n~~~~~ip~~~~~---~l~~L~~L~Ls~n~l~~~~p~--~~ 138 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTIN---LSNNQLSGPIPDDIFT---TSSSLRYLNLSNNNFTGSIPR--GS 138 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEE---CCCCccCCcCChHHhc---cCCCCCEEECcCCccccccCc--cc
Confidence 3578888888887765543 5566666766665 8888887755555444 6777777777777655 2332 34
Q ss_pred cccccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccccccc
Q 044382 126 LRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 126 l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
+++|++|++++|.++ .+|..++.+++|++|++++|.....+|..++++++|++|++++|.+.+.+|..++++++|+.|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 566666666666655 4466666666666666666544455555566666666666666664445555566666666664
Q ss_pred ceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCC-------------c
Q 044382 205 NFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSS-------------T 271 (543)
Q Consensus 205 ~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------------~ 271 (543)
+..+... ......+..++.++ .|.+.... .....+..+..+++|++|++++|......+. .
T Consensus 219 L~~n~l~-~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 219 LGYNNLS-GEIPYEIGGLTSLN-HLDLVYNN----LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CcCCccC-CcCChhHhcCCCCC-EEECcCce----eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 4333221 11222233333333 33332211 1111122244444444444444332111000 0
Q ss_pred ccccHHHHhcccCCCCCCcEEEEeccCCC-CCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCcccee
Q 044382 272 EAETEKDVLDMLKPHKNLEQFGICGYGGT-KFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVN 349 (543)
Q Consensus 272 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~ 349 (543)
........+..+..+++|+.|++++|... ..|.++.. +++|+.|++++|...+.++ .++.+++|+.|++++|....
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 00001112233445667777777766543 33444443 6677777777776655555 56667777777777664332
Q ss_pred eeCccccC----------------CC--CCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCC
Q 044382 350 RLGSKFYG----------------DD--SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTF 411 (543)
Q Consensus 350 ~~~~~~~~----------------~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~l 411 (543)
.++..+.. .. ....+++|+.|++.++....... ..+..+++|+.|++++ +.+++.+
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p-----~~~~~l~~L~~L~Ls~-N~l~~~~ 444 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP-----SEFTKLPLVYFLDISN-NNLQGRI 444 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC-----hhHhcCCCCCEEECcC-CcccCcc
Confidence 22221111 00 02235566666666543221111 1145677777777777 3566555
Q ss_pred CC---CCCCccEEEEecccCcccc--cCCCCccceEEEcCCCCe-eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCC
Q 044382 412 PE---HLPALEMLVIVECNELSIS--IASLPALCKMEIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIP 485 (543)
Q Consensus 412 p~---~l~~L~~L~l~~~~~l~~~--~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 485 (543)
|. .+++|+.|++.+|...... ....++|+.|++++|... ..+..+..+++|++|++++|.....+|.. +..++
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~ 523 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCK 523 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-HcCcc
Confidence 53 5677888888877644311 112578889999888775 46667788999999999997554556655 78899
Q ss_pred CccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccch
Q 044382 486 KLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 486 ~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 531 (543)
+|++|++++|.-...+ |..+..+++|+.|++++|+-...+|.
T Consensus 524 ~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 524 KLVSLDLSHNQLSGQI----PASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred CCCEEECCCCcccccC----ChhHhCcccCCEEECCCCcccccCCh
Confidence 9999999996433445 66889999999999999977666664
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=315.35 Aligned_cols=453 Identities=21% Similarity=0.230 Sum_probs=304.8
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc-ccCcccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~~~ 124 (543)
-..++++|++++|.+.+.... ..+++|++| ++++|.+.+ .++..++++++|++|++++|.+. .+|..++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L---~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR---GSIPNLETL---DLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred cCCCCCEEECcCCccccccCc---cccCCCCEE---ECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 346789999999887543321 234555555 488888776 44556668888888888888865 5677888
Q ss_pred CcccccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL 203 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 203 (543)
++++|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++|++|++++|.+.+.+|..++.+++|+.|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 8888888888888876 568888888888888888876666778778888888888888888556677778888888888
Q ss_pred cceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCc------------
Q 044382 204 CNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSST------------ 271 (543)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------------ 271 (543)
.+..+... ......+.++..++ .+.+.... .....+..+..+++|+.|++++|......+..
T Consensus 266 ~L~~n~l~-~~~p~~l~~l~~L~-~L~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 266 FLYQNKLS-GPIPPSIFSLQKLI-SLDLSDNS----LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred ECcCCeee-ccCchhHhhccCcC-EEECcCCe----eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 65443321 11223334444444 44433211 11122233455666666666555442211100
Q ss_pred -ccccHHHHhcccCCCCCCcEEEEeccCCC-CCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccce
Q 044382 272 -EAETEKDVLDMLKPHKNLEQFGICGYGGT-KFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRV 348 (543)
Q Consensus 272 -~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l 348 (543)
........+..+..+++|+.|++++|... .+|.++.. +++|+.|++.+|...+.++ .++.+++|++|++++|...
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS--SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC--cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 00000112223344556666666655532 33444433 5566777777666655555 5677888888888888543
Q ss_pred eeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCC--CCCccEEEEecc
Q 044382 349 NRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEH--LPALEMLVIVEC 426 (543)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~--l~~L~~L~l~~~ 426 (543)
..++.. ...+++|+.|+++++.... ..... ...+++|+.|++++| .+.+.+|.. .++|+.|++.+|
T Consensus 418 ~~~p~~------~~~l~~L~~L~Ls~N~l~~-~~~~~----~~~l~~L~~L~L~~n-~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 418 GELPSE------FTKLPLVYFLDISNNNLQG-RINSR----KWDMPSLQMLSLARN-KFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred eECChh------HhcCCCCCEEECcCCcccC-ccChh----hccCCCCcEEECcCc-eeeeecCcccccccceEEECcCC
Confidence 333322 3458899999999864322 22111 357999999999996 566677753 468999999988
Q ss_pred cCcc---cccCCCCccceEEEcCCCCe-eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcccc
Q 044382 427 NELS---ISIASLPALCKMEIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIW 502 (543)
Q Consensus 427 ~~l~---~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~ 502 (543)
.... ..+..+++|+.|++++|... .++..+..+++|++|+|++|.....+|.. +..+++|++|++++|+-...+
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~- 563 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLSGEI- 563 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh-HhCcccCCEEECCCCcccccC-
Confidence 6543 23456889999999999886 47778889999999999997444445544 889999999999997655567
Q ss_pred ccCccccccCCccceEeeccCCCCcccchhh
Q 044382 503 KSHNELLQDICSLKRLLITSCPKLQSLVAEE 533 (543)
Q Consensus 503 ~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 533 (543)
|..+..+++|+.|++++|+-...+|...
T Consensus 564 ---p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 564 ---PKNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred ---ChhHhcCcccCEEeccCCcceeeCCCcc
Confidence 6688999999999999998777777543
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=274.00 Aligned_cols=436 Identities=18% Similarity=0.181 Sum_probs=278.0
Q ss_pred CCcEEEchhHHHHHHHhccCce-------EEeecc--cccccccCCCCCceEEEeeccccCCcc-chhhhhcCCCceEEe
Q 044382 10 ASRFVMHDLISDLAQWAAGDIY-------FTMEYT--SEVNKQQSFPKNLRHLSYIPEYFDGGK-RFEDLYDIQHLRTFL 79 (543)
Q Consensus 10 ~~~~~mhd~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~ 79 (543)
.+.++|||++|+||++++.++. +.+... ........-..+++++++....+.... ...+|..+.+|+.|.
T Consensus 485 ~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~ 564 (1153)
T PLN03210 485 EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLK 564 (1153)
T ss_pred CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEE
Confidence 3579999999999999987542 222110 001112233467888887766553322 235677888888887
Q ss_pred ecccC---CCccccccccccccccccC-CeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhccccccee
Q 044382 80 PVRLS---NGFLSGYLACSILPKLFKL-QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTL 155 (543)
Q Consensus 80 ~~~l~---~n~~~~~~~~~~~~~~~~l-~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 155 (543)
+..-. .+.... .++..+..+ ..|+.|++.++.+..+|..| ...+|+.|++.+|.+..+|.++..+++|+.|
T Consensus 565 ~~~~~~~~~~~~~~----~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L 639 (1153)
T PLN03210 565 FYTKKWDQKKEVRW----HLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNI 639 (1153)
T ss_pred Eeccccccccccee----ecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEE
Confidence 53221 111222 334444455 46999999999999999887 5799999999999999999999999999999
Q ss_pred ecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceeccccc
Q 044382 156 LLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLE 235 (543)
Q Consensus 156 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~ 235 (543)
++++|..+..+|. ++.+++|+.|++.+|..+..+|..++.+++|+.|++..+.. +..+.
T Consensus 640 ~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-----------L~~Lp--------- 698 (1153)
T PLN03210 640 DLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-----------LEILP--------- 698 (1153)
T ss_pred ECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC-----------cCccC---------
Confidence 9999888888886 88999999999999987888998888888888886432211 10100
Q ss_pred CcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCcc
Q 044382 236 NIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLV 315 (543)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 315 (543)
..+ ++++|+.|+++++..... . . ...++|+.|.+.++....+|..+ .+++|+
T Consensus 699 ----------~~i-~l~sL~~L~Lsgc~~L~~-----------~-p--~~~~nL~~L~L~~n~i~~lP~~~---~l~~L~ 750 (1153)
T PLN03210 699 ----------TGI-NLKSLYRLNLSGCSRLKS-----------F-P--DISTNISWLDLDETAIEEFPSNL---RLENLD 750 (1153)
T ss_pred ----------CcC-CCCCCCEEeCCCCCCccc-----------c-c--cccCCcCeeecCCCccccccccc---cccccc
Confidence 001 356677777765542100 0 0 11345666666666555555433 245555
Q ss_pred EEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCc
Q 044382 316 TLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPK 395 (543)
Q Consensus 316 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 395 (543)
+|.+.++........+..++ . .....+++|+.|++++++.+..+... ++++++
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~----------------~------~~~~~~~sL~~L~Ls~n~~l~~lP~s-----i~~L~~ 803 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLT----------------P------LMTMLSPSLTRLFLSDIPSLVELPSS-----IQNLHK 803 (1153)
T ss_pred cccccccchhhccccccccc----------------h------hhhhccccchheeCCCCCCccccChh-----hhCCCC
Confidence 55554432110000000000 0 00112355666666665444433221 456777
Q ss_pred ccEEeeccCcCccCCCCC--CCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCC
Q 044382 396 LRELHILRCSKLQGTFPE--HLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQ 473 (543)
Q Consensus 396 L~~L~l~~c~~l~~~lp~--~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 473 (543)
|+.|++++|+.++ .+|. .+++|++|++.+|..+.......++|+.|+++++....+|..+..+++|++|++++|+.+
T Consensus 804 L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 804 LEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CCEEECCCCCCcC-eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 7777777776666 6663 356777777777766653333456788888888887778888888999999999999999
Q ss_pred cccCCCcCCCCCCccEEecccCCCCccccccC-cc--------ccccCCccceEeeccCCCCcc
Q 044382 474 VFLSGPLKPRIPKLEELKINNIQNETCIWKSH-NE--------LLQDICSLKRLLITSCPKLQS 528 (543)
Q Consensus 474 ~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~--------~l~~l~~L~~L~l~~c~~l~~ 528 (543)
..+|.. +..+++|+.+++++|.+++.++... |. ....+++...+.+.+|.++..
T Consensus 883 ~~l~~~-~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 883 QRVSLN-ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CccCcc-cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 988876 6778899999999998887653110 00 011234445567777877653
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-29 Score=228.76 Aligned_cols=436 Identities=19% Similarity=0.220 Sum_probs=303.2
Q ss_pred ccCCCC--CceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC
Q 044382 43 QQSFPK--NLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP 120 (543)
Q Consensus 43 ~~~~~~--~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp 120 (543)
...||. .++.+.++.|...... .++.+|..|.+++.++|.+. ..|++++.+..+..|+.+.|++..+|
T Consensus 38 ~e~wW~qv~l~~lils~N~l~~l~-----~dl~nL~~l~vl~~~~n~l~-----~lp~aig~l~~l~~l~vs~n~ls~lp 107 (565)
T KOG0472|consen 38 GENWWEQVDLQKLILSHNDLEVLR-----EDLKNLACLTVLNVHDNKLS-----QLPAAIGELEALKSLNVSHNKLSELP 107 (565)
T ss_pred hhhhhhhcchhhhhhccCchhhcc-----HhhhcccceeEEEeccchhh-----hCCHHHHHHHHHHHhhcccchHhhcc
Confidence 445554 3667888888775444 25677777888889999988 67888999999999999999999999
Q ss_pred ccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccc
Q 044382 121 DSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200 (543)
Q Consensus 121 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 200 (543)
+.++.+..|+.|+.+.|.+.++|++++.+..|+.++..+| .+..+|.+++.+.+|..+++.+|+ +..+|+..-+++.|
T Consensus 108 ~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L 185 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRL 185 (565)
T ss_pred HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 688899889999999999999999 88888776669999
Q ss_pred ccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHh
Q 044382 201 QTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVL 280 (543)
Q Consensus 201 ~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 280 (543)
++|+...+ .-...+.+++.+..+. .+++.. . .. .+.+ .|.+|..|+++.+..|.+ +.-..
T Consensus 186 ~~ld~~~N--~L~tlP~~lg~l~~L~-~LyL~~---N-ki-~~lP-ef~gcs~L~Elh~g~N~i-----------~~lpa 245 (565)
T KOG0472|consen 186 KHLDCNSN--LLETLPPELGGLESLE-LLYLRR---N-KI-RFLP-EFPGCSLLKELHVGENQI-----------EMLPA 245 (565)
T ss_pred Hhcccchh--hhhcCChhhcchhhhH-HHHhhh---c-cc-ccCC-CCCccHHHHHHHhcccHH-----------HhhHH
Confidence 99863322 1233445566666554 344321 1 11 1122 388888999998866654 11223
Q ss_pred cccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceee---------
Q 044382 281 DMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNR--------- 350 (543)
Q Consensus 281 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~--------- 350 (543)
+....++++..|++.+|...++|..+.- +.+|++|++++|.. ..+| .++++ .|+.|.+.||+--+.
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred HHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccH
Confidence 4456788999999999999999987765 78899999999855 4555 88999 899999999752110
Q ss_pred -------------eCcccc-CC------------CCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeecc-
Q 044382 351 -------------LGSKFY-GD------------DSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILR- 403 (543)
Q Consensus 351 -------------~~~~~~-~~------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~- 403 (543)
.+.... +. .......+.+.|++++ .+++.+....+- .+.-.-.+.++++.
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfe--a~~~~~Vt~VnfskN 398 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFE--AAKSEIVTSVNFSKN 398 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHH--HhhhcceEEEecccc
Confidence 000000 00 0022233455555554 222222110000 00000022333333
Q ss_pred ----------------------CcCccCCCCC---CCCCccEEEEecc--cCcccccCCCCccceEEEcCCCCeeeeccc
Q 044382 404 ----------------------CSKLQGTFPE---HLPALEMLVIVEC--NELSISIASLPALCKMEIGGCKKVVWRSAT 456 (543)
Q Consensus 404 ----------------------c~~l~~~lp~---~l~~L~~L~l~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 456 (543)
.+.+. .+|. .+++|..|++.++ ..+...++.+..|+.|+|+.|.+-.+|.+.
T Consensus 399 qL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~ 477 (565)
T KOG0472|consen 399 QLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECL 477 (565)
T ss_pred hHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHH
Confidence 12332 4442 3455666666554 233344555666777888777777777777
Q ss_pred CCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCC
Q 044382 457 DHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCP 524 (543)
Q Consensus 457 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~ 524 (543)
..+.-|+.+-.++ +.+..+++..+.++.+|.+|++.+ +.+.++ |..++++++|++|+++|+|
T Consensus 478 y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~I----Pp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 478 YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQI----PPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhC----ChhhccccceeEEEecCCc
Confidence 6666666666665 588888887789999999999999 799999 5589999999999999986
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-26 Score=217.73 Aligned_cols=384 Identities=17% Similarity=0.164 Sum_probs=208.7
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcC--CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDI--QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP 120 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp 120 (543)
+...+.+.+-|+++.+++..+.. ..+..+ +.-++| ++++|.+.. +...+| .++++|+.+.+.+|.++.+|
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~-~~l~g~lp~~t~~L---dlsnNkl~~-id~~~f---~nl~nLq~v~l~~N~Lt~IP 118 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDK-SRLKGFLPSQTQTL---DLSNNKLSH-IDFEFF---YNLPNLQEVNLNKNELTRIP 118 (873)
T ss_pred CCcCCCCceeeecCccccccccc-cccCCcCccceeee---ecccccccc-CcHHHH---hcCCcceeeeeccchhhhcc
Confidence 44555666667766666544322 111111 223334 366665553 222222 36666666666666666666
Q ss_pred ccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCccccccc-cccc
Q 044382 121 DSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPLG-IGKL 197 (543)
Q Consensus 121 ~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l 197 (543)
.......+|+.|+|.+|.|+++ .+.+..++.|+.||++.| .+.++|. .+.+-.++++|++++|. ++.+-.+ |..+
T Consensus 119 ~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~l 196 (873)
T KOG4194|consen 119 RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSL 196 (873)
T ss_pred cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-cccccccccccc
Confidence 6445555566666666666655 344566666666666664 4555542 24444566666666666 4444322 3333
Q ss_pred cccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHH
Q 044382 198 TCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEK 277 (543)
Q Consensus 198 ~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (543)
.+|-.|.+..+ .++......|+++++|+.|++..|.+- .
T Consensus 197 nsL~tlkLsrN------------------------------rittLp~r~Fk~L~~L~~LdLnrN~ir-----------i 235 (873)
T KOG4194|consen 197 NSLLTLKLSRN------------------------------RITTLPQRSFKRLPKLESLDLNRNRIR-----------I 235 (873)
T ss_pred chheeeecccC------------------------------cccccCHHHhhhcchhhhhhcccccee-----------e
Confidence 33333321111 111111122556666666666655540 0
Q ss_pred HHhcccCCCCCCcEEEEeccCCCCCCCC-CCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccc
Q 044382 278 DVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKF 355 (543)
Q Consensus 278 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~ 355 (543)
.-...+..+++|+.|.+..|.+..+..- |.. +.++++|+|+.|+....-. ++.++..|+.|+++.|
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~--l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N---------- 303 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG--LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN---------- 303 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceee--ecccceeecccchhhhhhcccccccchhhhhccchh----------
Confidence 0011223344455555555444333221 222 4556666666554432211 4445555555555544
Q ss_pred cCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC----CCCCccEEEEecccCcc-
Q 044382 356 YGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE----HLPALEMLVIVECNELS- 430 (543)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~~~~l~- 430 (543)
.+..+...++ +.+++|+.|+|++ |+++ .+++ .+..|++|.++++.--.
T Consensus 304 ---------------------aI~rih~d~W----sftqkL~~LdLs~-N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 304 ---------------------AIQRIHIDSW----SFTQKLKELDLSS-NRIT-RLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred ---------------------hhheeecchh----hhcccceeEeccc-cccc-cCChhHHHHHHHhhhhcccccchHHH
Confidence 2222222222 3566777777776 5666 5552 34566666666653221
Q ss_pred --cccCCCCccceEEEcCCCCee----eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcccccc
Q 044382 431 --ISIASLPALCKMEIGGCKKVV----WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKS 504 (543)
Q Consensus 431 --~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 504 (543)
..+..+++|++|++++|...- -...+.++++|+.|.+-+ ++++.++..+|..+++|++|++.+ +-+.+|.
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq-- 432 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQ-- 432 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeec--
Confidence 245557888888888876532 234666788888888888 588888888888888888888888 6788887
Q ss_pred CccccccCCccceEeecc
Q 044382 505 HNELLQDICSLKRLLITS 522 (543)
Q Consensus 505 ~~~~l~~l~~L~~L~l~~ 522 (543)
|+.+... .|++|.+..
T Consensus 433 -~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 433 -PNAFEPM-ELKELVMNS 448 (873)
T ss_pred -ccccccc-hhhhhhhcc
Confidence 5577766 777776643
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-25 Score=214.65 Aligned_cols=368 Identities=19% Similarity=0.218 Sum_probs=226.8
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-c
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-D 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~ 121 (543)
....|...+.|++++|.+..+.. ..|.++++|+.+. +..|.+.. +|.......+|+.|+|.+|.|+.+. +
T Consensus 73 ~g~lp~~t~~LdlsnNkl~~id~-~~f~nl~nLq~v~---l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se 143 (873)
T KOG4194|consen 73 KGFLPSQTQTLDLSNNKLSHIDF-EFFYNLPNLQEVN---LNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSE 143 (873)
T ss_pred CCcCccceeeeeccccccccCcH-HHHhcCCcceeee---eccchhhh-----cccccccccceeEEeeeccccccccHH
Confidence 45678889999999999877764 7788888888775 89998884 3333335577999999999999874 5
Q ss_pred cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcccccc-cccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLT 198 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~ 198 (543)
+++.++.|++|||+.|.|+++|. ++..-.++++|++++| .++.+.. .|..+.+|..|.++.|. +..+|. .|.+++
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLP 221 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCc-ccccCHHHhhhcc
Confidence 68999999999999999999964 4566689999999997 5666543 37788899999999999 888885 577899
Q ss_pred ccccccceEecCC--CCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccH
Q 044382 199 CLQTLCNFVVGKD--SGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETE 276 (543)
Q Consensus 199 ~L~~L~~~~~~~~--~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 276 (543)
+|+.|++..+... ....+.+|.++..++ +.-.+ +.......|..+.++++|++..|..+.
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlk--lqrN~------I~kL~DG~Fy~l~kme~l~L~~N~l~~---------- 283 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLK--LQRND------ISKLDDGAFYGLEKMEHLNLETNRLQA---------- 283 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhh--hhhcC------cccccCcceeeecccceeecccchhhh----------
Confidence 9999976544322 233344444444443 21111 111112236666777777776666421
Q ss_pred HHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccc
Q 044382 277 KDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKF 355 (543)
Q Consensus 277 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~ 355 (543)
..-..+-.++.|+.|+++.|.+..+....+. ..++|+.|+|++|...+--+ .+..+..|++|.+++| .++.+....
T Consensus 284 -vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~a 360 (873)
T KOG4194|consen 284 -VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGA 360 (873)
T ss_pred -hhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhH
Confidence 1223455566777777777665443221111 25667777777665433222 4556667777777666 233322111
Q ss_pred cCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCC
Q 044382 356 YGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIAS 435 (543)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~ 435 (543)
...+.+|++|++..+. +...+.. ....+..+++|+.|.+.+ |+++ .+|. -.+..
T Consensus 361 -----f~~lssL~~LdLr~N~-ls~~IED-aa~~f~gl~~LrkL~l~g-Nqlk-~I~k-----------------rAfsg 414 (873)
T KOG4194|consen 361 -----FVGLSSLHKLDLRSNE-LSWCIED-AAVAFNGLPSLRKLRLTG-NQLK-SIPK-----------------RAFSG 414 (873)
T ss_pred -----HHHhhhhhhhcCcCCe-EEEEEec-chhhhccchhhhheeecC-ceee-ecch-----------------hhhcc
Confidence 2335666666666532 2211111 111134466666666666 4665 5541 13334
Q ss_pred CCccceEEEcCCCCeee-ecccCCCCCCceEEEcC
Q 044382 436 LPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRD 469 (543)
Q Consensus 436 ~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 469 (543)
+++|++|++.+|...++ +.+|..+ .|++|.+..
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 55555555555555443 2233333 555554443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-27 Score=223.88 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=87.2
Q ss_pred CCCccEEEeecCCCC-CCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 311 FLNLVTLKFEDCGMC-TALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 311 l~~L~~L~l~~~~~~-~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
++.|+.|++++.+.. ..+| ++..+.+|..++++.| .+..++.-. ..+++|+.|+++++. ++.....
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecl------y~l~~LrrLNLS~N~-iteL~~~---- 263 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECL------YKLRNLRRLNLSGNK-ITELNMT---- 263 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHH------hhhhhhheeccCcCc-eeeeecc----
Confidence 445555555554332 2344 5556666666666554 333333222 235666666666642 2211111
Q ss_pred CCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCC--eeeecccCCCCCCceEE
Q 044382 389 GVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKK--VVWRSATDHLGSQNSVV 466 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~ 466 (543)
.+...+|++|+++. |.++ .+|.. +..++.|+.|.+.+|+. -.+|..++.+..|+++.
T Consensus 264 -~~~W~~lEtLNlSr-NQLt-~LP~a------------------vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 264 -EGEWENLETLNLSR-NQLT-VLPDA------------------VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred -HHHHhhhhhhcccc-chhc-cchHH------------------HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 24556778888887 5777 77742 22233333333333322 11444444455555555
Q ss_pred EcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcc
Q 044382 467 CRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQS 528 (543)
Q Consensus 467 l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~ 528 (543)
.++ +.++-+|.+ +..|+.|+.|.++. +++..+ |+.+.-++-|+.|++..+|++-.
T Consensus 323 aan-N~LElVPEg-lcRC~kL~kL~L~~-NrLiTL----PeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 323 AAN-NKLELVPEG-LCRCVKLQKLKLDH-NRLITL----PEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhc-cccccCchh-hhhhHHHHHhcccc-cceeec----hhhhhhcCCcceeeccCCcCccC
Confidence 555 344444444 44555555555544 444445 33455555555555555555544
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-25 Score=216.49 Aligned_cols=361 Identities=19% Similarity=0.219 Sum_probs=203.3
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccC
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGD 125 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~ 125 (543)
+.+-+|..++++|++.+..-..+...++.++-|. +....+. .+|..++.+.+|++|.+++|++..+...++.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLk---Lnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~ 76 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLK---LNRTKLE-----QVPEELSRLQKLEHLSMAHNQLISVHGELSD 76 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEE---echhhhh-----hChHHHHHHhhhhhhhhhhhhhHhhhhhhcc
Confidence 3455777788888877666556666666666665 5544444 4556666777777777777777766666777
Q ss_pred cccccEEecCCCCcc--ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccc-ccccccccc
Q 044382 126 LRYLRYLNLSGTVIR--TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQT 202 (543)
Q Consensus 126 l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~ 202 (543)
++.||.+++..|++. .+|..+.++..|..||++.| .+.+.|..+..-+++-.|++++|. +..+|.. +.+++.|--
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhh
Confidence 777777777777665 56777777777777777775 567777777777777777777777 7777754 445555555
Q ss_pred ccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcc
Q 044382 203 LCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDM 282 (543)
Q Consensus 203 L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 282 (543)
|+++.+.. +..+.....+..|+.|.+++|.. .--.+..
T Consensus 155 LDLS~NrL-------------------------------e~LPPQ~RRL~~LqtL~Ls~NPL-----------~hfQLrQ 192 (1255)
T KOG0444|consen 155 LDLSNNRL-------------------------------EMLPPQIRRLSMLQTLKLSNNPL-----------NHFQLRQ 192 (1255)
T ss_pred hccccchh-------------------------------hhcCHHHHHHhhhhhhhcCCChh-----------hHHHHhc
Confidence 54332211 11111233444555555544442 1122344
Q ss_pred cCCCCCCcEEEEeccC--CCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCC
Q 044382 283 LKPHKNLEQFGICGYG--GTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDD 359 (543)
Q Consensus 283 l~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 359 (543)
+...++|+.|.+++.. ...+|..+.. +.+|..++++.|.. ..+| .+-++++|+.|++++| .++.....
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~--l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N-~iteL~~~----- 263 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDD--LHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGN-KITELNMT----- 263 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhh--hhhhhhccccccCC-CcchHHHhhhhhhheeccCcC-ceeeeecc-----
Confidence 4444555555555443 2234444443 55566666655433 2333 4445566666666655 33333211
Q ss_pred CCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCcc-CCCCCCCCCccEEEEecccCc-----cccc
Q 044382 360 SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQ-GTFPEHLPALEMLVIVECNEL-----SISI 433 (543)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~lp~~l~~L~~L~l~~~~~l-----~~~~ 433 (543)
...-.+|++|+++.+ .+...... +..+++|+.|.+.+ |+++ ..+|..+.+|..|.+...... ...+
T Consensus 264 -~~~W~~lEtLNlSrN-QLt~LP~a-----vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 264 -EGEWENLETLNLSRN-QLTVLPDA-----VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred -HHHHhhhhhhccccc-hhccchHH-----HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 122445666666553 22222111 34566666666665 4554 234443333333332221111 1134
Q ss_pred CCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcc
Q 044382 434 ASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVF 475 (543)
Q Consensus 434 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 475 (543)
..+..|+.|.++.|...++|.++.-++-|+.|++.+++++--
T Consensus 336 cRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccC
Confidence 446667777777777777777777777777777777666543
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=223.95 Aligned_cols=343 Identities=18% Similarity=0.253 Sum_probs=217.8
Q ss_pred cccCCeeeEEEecCCCc------c-ccCccccCc-ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHh
Q 044382 100 LFKLQRLRVFSLRGYHI------Y-ELPDSIGDL-RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMG 171 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l------~-~lp~~~~~l-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~ 171 (543)
|..|++|+.|.+..+.. . .+|..+..+ .+|+.|.+.++.++.+|..+ ...+|+.|++.+| .+..+|.++.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~ 631 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVH 631 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccccc
Confidence 34777888877755421 1 355556554 35788888877777777766 4677788888775 4666777677
Q ss_pred hhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCc
Q 044382 172 NLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGK 251 (543)
Q Consensus 172 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~ 251 (543)
.+++|+.|+++++..++.+|. ++.+++|+.|.+..+.. +. ..+..+..+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~--------------L~----------------~lp~si~~L 680 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSS--------------LV----------------ELPSSIQYL 680 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCC--------------cc----------------ccchhhhcc
Confidence 777888888877665566653 55556666554321100 00 011124445
Q ss_pred cccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCC
Q 044382 252 KNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSV 331 (543)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 331 (543)
++|+.|+++++.. ...+|..+ .+++|+.|.+++|.....+|.+
T Consensus 681 ~~L~~L~L~~c~~----------------------------------L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 681 NKLEDLDMSRCEN----------------------------------LEILPTGI---NLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred CCCCEEeCCCCCC----------------------------------cCccCCcC---CCCCCCEEeCCCCCCccccccc
Confidence 5555555543321 22223222 2455666666666554444422
Q ss_pred CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccC-CC-CCCCCCCCcccEEeeccCcCccC
Q 044382 332 GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPH-GS-SQGVERFPKLRELHILRCSKLQG 409 (543)
Q Consensus 332 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~-~~~~~~~~~L~~L~l~~c~~l~~ 409 (543)
.++|++|+++++. ++.++.. ..+++|++|.+.++....-+... .. ......+++|+.|++++|+.+.
T Consensus 724 --~~nL~~L~L~~n~-i~~lP~~-------~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~- 792 (1153)
T PLN03210 724 --STNISWLDLDETA-IEEFPSN-------LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV- 792 (1153)
T ss_pred --cCCcCeeecCCCc-ccccccc-------ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-
Confidence 3456666665552 3322211 13556666666543221110000 00 0002346799999999987776
Q ss_pred CCCC---CCCCccEEEEecccCccccc--CCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCC
Q 044382 410 TFPE---HLPALEMLVIVECNELSISI--ASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRI 484 (543)
Q Consensus 410 ~lp~---~l~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 484 (543)
.+|. .+++|+.|++.+|..+.... ..+++|+.|++++|..+..... ..++|++|++++ +.++.+|.. +..+
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~-n~i~~iP~s-i~~l 868 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD--ISTNISDLNLSR-TGIEEVPWW-IEKF 868 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc--cccccCEeECCC-CCCccChHH-HhcC
Confidence 7884 57789999999998776321 1488999999999987653222 257899999999 588889876 7899
Q ss_pred CCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccch
Q 044382 485 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 485 ~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 531 (543)
++|+.|++++|++++.+ |..+..+++|+.+++++|++++.++-
T Consensus 869 ~~L~~L~L~~C~~L~~l----~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRV----SLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCCEEECCCCCCcCcc----CcccccccCCCeeecCCCcccccccC
Confidence 99999999999999999 45678899999999999999987654
|
syringae 6; Provisional |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-22 Score=213.11 Aligned_cols=169 Identities=27% Similarity=0.315 Sum_probs=135.2
Q ss_pred CCCCcEEEchhHHHHHHHhcc-----CceEEeecc--cccccccCCCCCceEEEeeccccCCccchhhhhcCCCceEEee
Q 044382 8 NDASRFVMHDLISDLAQWAAG-----DIYFTMEYT--SEVNKQQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLP 80 (543)
Q Consensus 8 ~~~~~~~mhd~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~ 80 (543)
+....|+|||+|||||.|+|+ ++..++..+ ...-+....+..+|++++.+|.+... ..-...++|++|.
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLl- 551 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLL- 551 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEE-
Confidence 456899999999999999999 555554432 11124556678999999999987443 3334567899998
Q ss_pred cccCCCcc-ccccccccccccccCCeeeEEEecCCC-ccccCccccCcccccEEecCCCCccccchhhhcccccceeecC
Q 044382 81 VRLSNGFL-SGYLACSILPKLFKLQRLRVFSLRGYH-IYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLE 158 (543)
Q Consensus 81 ~~l~~n~~-~~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 158 (543)
+.+|.. ...++..+|. .|+.|++|||++|. +..+|++++++-+||||+++++.+..+|.++++|..|.+|++.
T Consensus 552 --l~~n~~~l~~is~~ff~---~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 552 --LQRNSDWLLEISGEFFR---SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred --EeecchhhhhcCHHHHh---hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 555542 3345556677 99999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCchhhhhhHHHhhhcccceeecCCCC
Q 044382 159 GCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 159 ~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
.+.....+|.....+++|++|.+....
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccchhhhcccccEEEeeccc
Confidence 887777776666679999999997655
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-25 Score=221.96 Aligned_cols=421 Identities=21% Similarity=0.233 Sum_probs=261.0
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~ 127 (543)
+.+++|++..|..-.. ..+...+.-+ |+.++++.|.+. .||..+..+.+|+.|.++.|.+...|.++.++.
T Consensus 21 ~~~~~ln~~~N~~l~~-pl~~~~~~v~---L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~ 91 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSR-PLEFVEKRVK---LKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMR 91 (1081)
T ss_pred HHHHhhhccccccccC-chHHhhheee---eEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhh
Confidence 3377788877755322 2455555444 455569988888 577888899999999999999999999999999
Q ss_pred cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceE
Q 044382 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFV 207 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~ 207 (543)
+|++|+|.+|.+..+|.++..+.+|++||+++| ....+|..+..++.+.++..++|..+..++... .+++++..
T Consensus 92 ~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~ 165 (1081)
T KOG0618|consen 92 NLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRL 165 (1081)
T ss_pred cchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhh
Confidence 999999999999999999999999999999997 677788878889999999998884344443321 22221111
Q ss_pred ecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCc--------------------cccceeeeeeecCCCC
Q 044382 208 VGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGK--------------------KNLKELSLNWTCSTDG 267 (543)
Q Consensus 208 ~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~--------------------~~L~~L~l~~~~~~~~ 267 (543)
.. .....+.++..+.+ .+++..... . ...+..+ ++++.|..+.|..+
T Consensus 166 n~-l~~~~~~~i~~l~~---~ldLr~N~~----~---~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-- 232 (1081)
T KOG0618|consen 166 NV-LGGSFLIDIYNLTH---QLDLRYNEM----E---VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-- 232 (1081)
T ss_pred hh-cccchhcchhhhhe---eeecccchh----h---hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce--
Confidence 10 00111112222221 011100000 0 0001112 23333333333221
Q ss_pred CCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccc
Q 044382 268 LSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSR 347 (543)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 347 (543)
....-....+|+.++++++....+|.|+.. +.+|+.+...+|.......-+....+|+.+.+..| .
T Consensus 233 -----------~~~~~p~p~nl~~~dis~n~l~~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-e 298 (1081)
T KOG0618|consen 233 -----------TLDVHPVPLNLQYLDISHNNLSNLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYN-E 298 (1081)
T ss_pred -----------eeccccccccceeeecchhhhhcchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-h
Confidence 111122244677777777777777777765 66777777776655221113334444444444443 3
Q ss_pred eeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCC---------------------CCCCCCCCcccEEeeccCcC
Q 044382 348 VNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGS---------------------SQGVERFPKLRELHILRCSK 406 (543)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---------------------~~~~~~~~~L~~L~l~~c~~ 406 (543)
++.++... .++..|++|++..+. +........ +-+-..++.|+.|.+.+ |.
T Consensus 299 l~yip~~l------e~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~ 370 (1081)
T KOG0618|consen 299 LEYIPPFL------EGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NH 370 (1081)
T ss_pred hhhCCCcc------cccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Cc
Confidence 33333221 224445555544321 111100000 00123566788888888 46
Q ss_pred ccC-CCC--CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCc
Q 044382 407 LQG-TFP--EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPL 480 (543)
Q Consensus 407 l~~-~lp--~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 480 (543)
++. .+| ..+.+||.|+++++.-.. ..+..++.|++|+++||+..+++..+..++.|++|...+ +.+...| +
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e- 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-E- 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-h-
Confidence 653 344 577889999998874332 245568888999999999988888888899999998888 5888888 4
Q ss_pred CCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCC
Q 044382 481 KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 481 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
+..++.|+.++++. ++++.+.. |..... ++||+|+++|++.
T Consensus 448 ~~~l~qL~~lDlS~-N~L~~~~l--~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSC-NNLSEVTL--PEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEeccc-chhhhhhh--hhhCCC-cccceeeccCCcc
Confidence 67899999999987 78887632 212221 7999999999876
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-24 Score=217.75 Aligned_cols=404 Identities=19% Similarity=0.202 Sum_probs=270.5
Q ss_pred ceEEEeeccccCCccchhhhh-cCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLY-DIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~ 128 (543)
++.|+++.|.+. .|+ ..+.+.+|..++++.|.+. ..+.+.+++.+|++|.|.+|.+..+|.++.++++
T Consensus 47 L~~l~lsnn~~~------~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS------SFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eEEeeccccccc------cCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 889999999763 222 4566666777779999888 3556777999999999999999999999999999
Q ss_pred ccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEe
Q 044382 129 LRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
|++|++++|.+..+|..+..++.++.++.++|..+..++. .. ++.+++..+.+...++.++..++. .|++..+
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N 188 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN 188 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence 9999999999999999999999999999999855554443 22 667777777766667777776666 3433333
Q ss_pred cCCCCCChhhhcccccccc------ceeccccc--CcCCccchhhh--ccCCccccceeeeeeecCCCCCCCcccccHHH
Q 044382 209 GKDSGSGLRELKSLIHLQG------TLKISKLE--NIKDIGDAKEA--RLDGKKNLKELSLNWTCSTDGLSSTEAETEKD 278 (543)
Q Consensus 209 ~~~~~~~~~~l~~l~~l~~------~L~~~~l~--~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (543)
... ...+..+.++..+.. .+++.+.. ........... .-..-.++++++++++... .
T Consensus 189 ~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~------------~ 255 (1081)
T KOG0618|consen 189 EME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS------------N 255 (1081)
T ss_pred hhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh------------c
Confidence 222 122222222222210 11111110 00000000000 0112257888998887763 2
Q ss_pred HhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCC
Q 044382 279 VLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGD 358 (543)
Q Consensus 279 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 358 (543)
.+..+..+.+|+.+...+|....+|..+.. .++|++|.+..|......+..+.+..|++|++..|. +...+..+...
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~--~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v 332 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVALPLRISR--ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAV 332 (1081)
T ss_pred chHHHHhcccceEecccchhHHhhHHHHhh--hhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhh
Confidence 335666788888888888877776665554 667777877777553333355667788888887662 22211111000
Q ss_pred --------------------CCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC----CC
Q 044382 359 --------------------DSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EH 414 (543)
Q Consensus 359 --------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~ 414 (543)
-....++.|+.|.+.++ .+++.++.. +..++.|+.|++++ |.+. .+| ..
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~----l~~~~hLKVLhLsy-NrL~-~fpas~~~k 405 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPV----LVNFKHLKVLHLSY-NRLN-SFPASKLRK 405 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhh----hccccceeeeeecc-cccc-cCCHHHHhc
Confidence 00234566778888874 555554433 47899999999999 6898 888 35
Q ss_pred CCCccEEEEecccC--cccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCC-CCccEEe
Q 044382 415 LPALEMLVIVECNE--LSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRI-PKLEELK 491 (543)
Q Consensus 415 l~~L~~L~l~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~~L~~L~ 491 (543)
++.|++|.++++.- +...+..++.|+.|.-.+|....+| .+..++.|+.+|++. +.++.+-.. .... ++|++|+
T Consensus 406 le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~-~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLP-EALPSPNLKYLD 482 (1081)
T ss_pred hHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhh-hhCCCcccceee
Confidence 77888888888743 3445666899999999999888888 666699999999999 466654322 1223 8999999
Q ss_pred cccCCC
Q 044382 492 INNIQN 497 (543)
Q Consensus 492 l~~c~~ 497 (543)
++|+.+
T Consensus 483 lSGN~~ 488 (1081)
T KOG0618|consen 483 LSGNTR 488 (1081)
T ss_pred ccCCcc
Confidence 999654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-24 Score=195.35 Aligned_cols=406 Identities=19% Similarity=0.219 Sum_probs=278.9
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG 124 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~ 124 (543)
+-...+..+.++.|...... .+..++..+++| +.+.|.+. .+|+.+..+..++.|+.++|.+.++|++++
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp--~aig~l~~l~~l---~vs~n~ls-----~lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLP--AAIGELEALKSL---NVSHNKLS-----ELPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred hcccceeEEEeccchhhhCC--HHHHHHHHHHHh---hcccchHh-----hccHHHhhhhhhhhhhccccceeecCchHH
Confidence 34466788888888664332 444455555555 58888888 577888889999999999999999999999
Q ss_pred CcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
.+..|..|+..+|+++.+|+.++.+.+|..+++.+| .+..+|...-+++.|++||...|. ++.+|+.++.+.+|..|+
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHH
Confidence 999999999999999999999999999999999997 677777666669999999999999 999999999999999887
Q ss_pred ceEecCCCCCChhhhccccccccceecccccCcCCccchhhh-ccCCccccceeeeeeecCCCCCCCcccccHHHHhccc
Q 044382 205 NFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEA-RLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDML 283 (543)
Q Consensus 205 ~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 283 (543)
+..+.. ..+.+++.++.++ ++++.. ...+..++ ..+++.++..|++..|... ..+..+
T Consensus 213 L~~Nki---~~lPef~gcs~L~-Elh~g~-----N~i~~lpae~~~~L~~l~vLDLRdNklk------------e~Pde~ 271 (565)
T KOG0472|consen 213 LRRNKI---RFLPEFPGCSLLK-ELHVGE-----NQIEMLPAEHLKHLNSLLVLDLRDNKLK------------EVPDEI 271 (565)
T ss_pred hhhccc---ccCCCCCccHHHH-HHHhcc-----cHHHhhHHHHhcccccceeeeccccccc------------cCchHH
Confidence 644432 2333455555555 444432 11222222 3557889999999777664 344566
Q ss_pred CCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCC-------------------------------------
Q 044382 284 KPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCT------------------------------------- 326 (543)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------------------------- 326 (543)
..+.+|+.|++++|.+..+|...++ + .|+.|.+.||..-+
T Consensus 272 clLrsL~rLDlSNN~is~Lp~sLgn--l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISSLPYSLGN--L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHhhhhhhhcccCCccccCCccccc--c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 6788999999999999888887776 5 78888888876310
Q ss_pred C-----CCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc----------------------ccc
Q 044382 327 A-----LPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ----------------------EWE 379 (543)
Q Consensus 327 ~-----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------~l~ 379 (543)
+ +++...+.+.+.|++++- .++.++.+.+.. ..-.-....+++.+. +.-
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea---~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEA---AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred CCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHH---hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 0 112223456667777654 445554433221 000011222222211 111
Q ss_pred ccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCC---CccEEEEecccCc--ccccCCCCccceEEEcCCCCeeeec
Q 044382 380 EWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLP---ALEMLVIVECNEL--SISIASLPALCKMEIGGCKKVVWRS 454 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~---~L~~L~l~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~ 454 (543)
+|. +.-++.+++|+.|++++ |-+. .+|..+. .|+.|+++.+..- ...+..+..++.+-.+++....++.
T Consensus 425 sfv----~~~l~~l~kLt~L~L~N-N~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 425 SFV----PLELSQLQKLTFLDLSN-NLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred ccc----hHHHHhhhcceeeeccc-chhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence 111 12257899999999998 5676 8996555 4666666554221 1122224445555555566655555
Q ss_pred -ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCc
Q 044382 455 -ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNET 499 (543)
Q Consensus 455 -~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~ 499 (543)
.+.++.+|..|++.+ +.+..+|+. +++|.+|++|.+.| +.++
T Consensus 499 ~~l~nm~nL~tLDL~n-Ndlq~IPp~-LgnmtnL~hLeL~g-Npfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQN-NDLQQIPPI-LGNMTNLRHLELDG-NPFR 541 (565)
T ss_pred HHhhhhhhcceeccCC-CchhhCChh-hccccceeEEEecC-CccC
Confidence 488899999999999 588999988 89999999999999 4555
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.4e-18 Score=154.62 Aligned_cols=267 Identities=18% Similarity=0.172 Sum_probs=134.3
Q ss_pred cCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCC-CCccccchh-hhcccccceeecCC
Q 044382 83 LSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSG-TVIRTLPES-VNKLYNLHTLLLEG 159 (543)
Q Consensus 83 l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~-~~i~~lp~~-~~~l~~L~~L~l~~ 159 (543)
+..|.++ .||+.+|. .+++||+|||+.|+|+.| |.+|.+++.|-.|-+.+ |.|+++|.. +++|..|+.|.+.-
T Consensus 74 LdqN~I~-~iP~~aF~---~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 74 LDQNQIS-SIPPGAFK---TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eccCCcc-cCChhhcc---chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 5566666 24444444 666666666666666665 55666666666666555 566666543 55666666666665
Q ss_pred Cchhhhh-hHHHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKL-CADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
| .+..+ ...+..+++|..|.+.+|. ++.++. .+..+..++.+.+-.........+..+....... .....+....
T Consensus 150 n-~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~-~ietsgarc~ 226 (498)
T KOG4237|consen 150 N-HINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN-PIETSGARCV 226 (498)
T ss_pred h-hhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhc-hhhcccceec
Confidence 4 33333 2445666666666666666 555554 3555556655543222211111111110000000 0000000000
Q ss_pred CC-------ccchhhhccCCcccccee--eeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC-CCCC
Q 044382 238 KD-------IGDAKEARLDGKKNLKEL--SLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP-TWLG 307 (543)
Q Consensus 238 ~~-------~~~~~~~~l~~~~~L~~L--~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~ 307 (543)
.. ........+. ..++.+ .+.... ..........+.++++|++|++++|.++.+. .||.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~~d---------~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFL--CSLESLPSRLSSED---------FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chHHHHHHHhcccchhhhh--hhHHhHHHhhcccc---------CcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 00 0000000000 011111 000000 0011111233667889999999998877663 4555
Q ss_pred CCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc
Q 044382 308 DSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ 376 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (543)
+ ...++.|.+..|+.. .+. .+..+..|++|++.+| .++.+.... ......|.+|.+..++
T Consensus 296 ~--~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N-~it~~~~~a-----F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 296 G--AAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDN-QITTVAPGA-----FQTLFSLSTLNLLSNP 357 (498)
T ss_pred c--hhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCC-eeEEEeccc-----ccccceeeeeehccCc
Confidence 4 678888888887553 332 5677888999999888 444443222 2335567777776544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-18 Score=155.52 Aligned_cols=406 Identities=17% Similarity=0.157 Sum_probs=241.4
Q ss_pred cccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecC-CCccccC
Q 044382 42 KQQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRG-YHIYELP 120 (543)
Q Consensus 42 ~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~~lp 120 (543)
.+.++|.....+.+..|.|..+.. .+|..+.+||.| +++.|.++. |.+..|. .++.|..|-+-+ |+|+.+|
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~-~aF~~l~~LRrL---dLS~N~Is~-I~p~AF~---GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPP-GAFKTLHRLRRL---DLSKNNISF-IAPDAFK---GLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCCCcceEEEeccCCcccCCh-hhccchhhhcee---cccccchhh-cChHhhh---hhHhhhHHHhhcCCchhhhh
Confidence 366889999999999999987765 666666666655 699999984 5445555 888888876655 8899998
Q ss_pred cc-ccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCccc--------
Q 044382 121 DS-IGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEE-------- 189 (543)
Q Consensus 121 ~~-~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~-------- 189 (543)
.. |.++..|+.|.+.-|.+..+ ...+..+++|..|.+.+| .++.++. .+..+..++.+.+..|.++-.
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 74 89999999999999999876 567889999999999996 7788876 578899999999887774322
Q ss_pred ----ccccccccccc--ccccceEe-cCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeee
Q 044382 190 ----MPLGIGKLTCL--QTLCNFVV-GKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262 (543)
Q Consensus 190 ----lp~~l~~l~~L--~~L~~~~~-~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (543)
.|..++..... ..|+.... ........ ..+..++..+. .............|.++++|+.+++++|
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~---c~~esl~s~~~----~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFL---CSLESLPSRLS----SEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhh---hhHHhHHHhhc----cccCcCCcChHHHHhhcccceEeccCCC
Confidence 11111111111 11110000 00000000 01111110111 1111111222234889999999999888
Q ss_pred cCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceee
Q 044382 263 CSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLT 341 (543)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 341 (543)
..+. .....+.....++.|.+..|.+..+...+.. .+..|+.|++++|+.....+ .|..+..|.+|.
T Consensus 285 ~i~~-----------i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~-~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 285 KITR-----------IEDGAFEGAAELQELYLTRNKLEFVSSGMFQ-GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred ccch-----------hhhhhhcchhhhhhhhcCcchHHHHHHHhhh-ccccceeeeecCCeeEEEecccccccceeeeee
Confidence 7642 2234566678889999988886655443322 48899999999987755444 677888888888
Q ss_pred ecCccceee-----eCcc-----ccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCC
Q 044382 342 VRGMSRVNR-----LGSK-----FYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTF 411 (543)
Q Consensus 342 l~~~~~l~~-----~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~l 411 (543)
+-.|+.-=. .... ..+.......-.++.+.+++... .+.... . =++. +| .-.+.-
T Consensus 353 l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~-~~~~c~--------~--~ee~---~~-~~s~~c 417 (498)
T KOG4237|consen 353 LLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAF-GDFRCG--------G--PEEL---GC-LTSSPC 417 (498)
T ss_pred hccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccc-cccccC--------C--cccc---CC-CCCCCC
Confidence 876642110 0000 11111122233455555554221 111000 0 0000 00 000122
Q ss_pred CCCCCCccEEEEecccCccc-ccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEE
Q 044382 412 PEHLPALEMLVIVECNELSI-SIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEEL 490 (543)
Q Consensus 412 p~~l~~L~~L~l~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L 490 (543)
|...+-+.++.=.....++. .-+.+..-.+|++.++.+..++.. .+.+| .+++++ +.+..+....|.++..|.+|
T Consensus 418 P~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~--~~~~l-~~dls~-n~i~~Lsn~tf~n~tql~tl 493 (498)
T KOG4237|consen 418 PPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE--LLRSL-LLDLSN-NRISSLSNYTFSNMTQLSTL 493 (498)
T ss_pred CCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH--HHhhh-hccccc-Cceehhhcccccchhhhhee
Confidence 22222222221111111111 111244556677888877777666 47788 888888 57888888888899999988
Q ss_pred eccc
Q 044382 491 KINN 494 (543)
Q Consensus 491 ~l~~ 494 (543)
.|++
T Consensus 494 ilsy 497 (498)
T KOG4237|consen 494 ILSY 497 (498)
T ss_pred EEec
Confidence 8876
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-15 Score=154.78 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=63.1
Q ss_pred CcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCC
Q 044382 394 PKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQ 473 (543)
Q Consensus 394 ~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 473 (543)
++|+.|++++ |.++ .+|....+|+.|++.++.... .....++|+.|++++|....+|.. +.+|+.|++++ +.+
T Consensus 362 ~~L~~L~Ls~-N~L~-~LP~l~~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~-NqL 434 (788)
T PRK15387 362 SELYKLWAYN-NRLT-SLPALPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLTSLPML---PSGLLSLSVYR-NQL 434 (788)
T ss_pred cccceehhhc-cccc-cCcccccccceEEecCCcccC-CCCcccCCCEEEccCCcCCCCCcc---hhhhhhhhhcc-Ccc
Confidence 3456666666 4666 566555567777776653222 112246778888888776655543 45677888888 477
Q ss_pred cccCCCcCCCCCCccEEecccCCCCc
Q 044382 474 VFLSGPLKPRIPKLEELKINNIQNET 499 (543)
Q Consensus 474 ~~l~~~~~~~~~~L~~L~l~~c~~l~ 499 (543)
+.+|.. +..+++|+.|+++++ .++
T Consensus 435 t~LP~s-l~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 435 TRLPES-LIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred cccChH-HhhccCCCeEECCCC-CCC
Confidence 788766 667888888888884 454
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-15 Score=152.27 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=44.9
Q ss_pred cccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCC
Q 044382 395 KLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTS 471 (543)
Q Consensus 395 ~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 471 (543)
+|+.|++++ |.++ .+|...++|+.|+++++.-.. ....+.+|+.|++++|....+|..+..+++|+.|++++|+
T Consensus 383 ~L~~LdLs~-N~Lt-~LP~l~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 383 GLKELIVSG-NRLT-SLPVLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccceEEecC-Cccc-CCCCcccCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 345555554 3444 444444455555555543221 1112446777888888877788878888889999998864
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-16 Score=129.54 Aligned_cols=147 Identities=24% Similarity=0.348 Sum_probs=117.2
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~ 127 (543)
+++++|.+++|.+..... +..+|..|.++++.+|++. ..|..+++++.|+.|++.-|.+..+|..|+.++
T Consensus 33 s~ITrLtLSHNKl~~vpp-----nia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPP-----NIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhhhhhhcccCceeecCC-----cHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 567888888887754432 3344445555568888877 567788888899999988888888888888899
Q ss_pred cccEEecCCCCcc--ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 128 YLRYLNLSGTVIR--TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 128 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
-|++|||.+|++. .+|..+..++.|+.|++++| ..+.+|.+++++++||.|.+..|. +-++|.+++.++.|++|.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 9999999888776 67888888888888888886 677788888999999999998888 7778888888888888865
Q ss_pred e
Q 044382 206 F 206 (543)
Q Consensus 206 ~ 206 (543)
.
T Consensus 181 q 181 (264)
T KOG0617|consen 181 Q 181 (264)
T ss_pred c
Confidence 4
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=144.11 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=51.5
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 184 (543)
+...|+++++.++.+|..+. +.|+.|++++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 45677777777777776552 467777777777777776554 46777777765 4555665433 35677777776
Q ss_pred CCcccccc
Q 044382 185 DSLEEMPL 192 (543)
Q Consensus 185 ~~~~~lp~ 192 (543)
. +..+|.
T Consensus 252 ~-L~~LP~ 258 (754)
T PRK15370 252 R-ITELPE 258 (754)
T ss_pred c-cCcCCh
Confidence 6 445543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-15 Score=122.83 Aligned_cols=120 Identities=31% Similarity=0.385 Sum_probs=106.0
Q ss_pred ecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCC
Q 044382 80 PVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEG 159 (543)
Q Consensus 80 ~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~ 159 (543)
.+.++.|.++ ..+|.+..+.+|++|++++|+++++|.+++.+++|+.|++.-|.+..+|.+++.++.|+.||+++
T Consensus 37 rLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 37 RLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 3348999888 46778888999999999999999999999999999999999999999999999999999999998
Q ss_pred Cchh-hhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 160 CRRL-KKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 160 ~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
|..- ..+|..+..++.|+.|++++|. .+.+|..++++++|+.|.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSL 157 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEee
Confidence 7433 4578778889999999999999 8889999999999998854
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=142.97 Aligned_cols=100 Identities=15% Similarity=0.260 Sum_probs=78.4
Q ss_pred ecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCC
Q 044382 80 PVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEG 159 (543)
Q Consensus 80 ~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~ 159 (543)
.+++.++.+.. +|..+++ .|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 182 ~L~L~~~~Lts-LP~~Ip~------~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 182 ELRLKILGLTT-IPACIPE------QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred EEEeCCCCcCc-CCccccc------CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 34477777774 4544544 79999999999999988664 589999999999999988664 4799999999
Q ss_pred CchhhhhhHHHhhhcccceeecCCCCCcccccccc
Q 044382 160 CRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGI 194 (543)
Q Consensus 160 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l 194 (543)
| .+..+|..+. .+|+.|++++|. +..+|..+
T Consensus 251 N-~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l 281 (754)
T PRK15370 251 N-RITELPERLP--SALQSLDLFHNK-ISCLPENL 281 (754)
T ss_pred C-ccCcCChhHh--CCCCEEECcCCc-cCcccccc
Confidence 8 5668887654 589999999888 66676543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-13 Score=142.32 Aligned_cols=99 Identities=33% Similarity=0.448 Sum_probs=55.6
Q ss_pred eeeEEEecCCC--ccccCcc-ccCcccccEEecCCC-CccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 105 RLRVFSLRGYH--IYELPDS-IGDLRYLRYLNLSGT-VIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 105 ~L~~L~Ls~~~--l~~lp~~-~~~l~~L~~L~L~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
.|++|-+.+|. +..++.. |..++.|++|||++| .+.++|.+++.|.+||+|++++ +.+..+|.++++|.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence 56666665554 4444333 455666666666655 3446666666666666666666 35556666666666666666
Q ss_pred cCCCCCcccccccccccccccccc
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
+..+.....+|.....+.+||.|.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred cccccccccccchhhhcccccEEE
Confidence 665553444433344455555553
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-12 Score=126.19 Aligned_cols=284 Identities=20% Similarity=0.138 Sum_probs=139.9
Q ss_pred EEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-------cCccccC
Q 044382 53 LSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-------LPDSIGD 125 (543)
Q Consensus 53 L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-------lp~~~~~ 125 (543)
|++..+.+........+..+..++.|. +.++.+...-...++..+...+.+++|+++++.+.. ++..+..
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~---l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLR---LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEe---ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 444444443222223334444444443 666655432122334444456667777777766542 2334556
Q ss_pred cccccEEecCCCCcc-ccchhhhcccc---cceeecCCCchh----hhhhHHHhhh-cccceeecCCCCCccc----ccc
Q 044382 126 LRYLRYLNLSGTVIR-TLPESVNKLYN---LHTLLLEGCRRL----KKLCADMGNL-IKLHHLNDSNTDSLEE----MPL 192 (543)
Q Consensus 126 l~~L~~L~L~~~~i~-~lp~~~~~l~~---L~~L~l~~~~~~----~~l~~~~~~l-~~L~~L~l~~~~~~~~----lp~ 192 (543)
+++|++|++++|.+. ..+..+..+.+ |++|++++|... ..+...+..+ ++|+.|++++|.+... ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 677777777777665 33444544544 777777776432 1222334455 6777777777773321 222
Q ss_pred ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcc
Q 044382 193 GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTE 272 (543)
Q Consensus 193 ~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 272 (543)
.+..+++|++|++..+... ..........+...++|++|++++|..+
T Consensus 160 ~~~~~~~L~~L~l~~n~l~--------------------------~~~~~~l~~~l~~~~~L~~L~L~~n~i~------- 206 (319)
T cd00116 160 ALRANRDLKELNLANNGIG--------------------------DAGIRALAEGLKANCNLEVLDLNNNGLT------- 206 (319)
T ss_pred HHHhCCCcCEEECcCCCCc--------------------------hHHHHHHHHHHHhCCCCCEEeccCCccC-------
Confidence 2333444554432211100 0000111112334467777777666542
Q ss_pred cccHHHHhcccCCCCCCcEEEEeccCCCCC-----CCCCCCCCCCCccEEEeecCCCCC----CCC-CCCCCCccceeee
Q 044382 273 AETEKDVLDMLKPHKNLEQFGICGYGGTKF-----PTWLGDSSFLNLVTLKFEDCGMCT----ALP-SVGQLPSLKHLTV 342 (543)
Q Consensus 273 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~----~~~-~~~~l~~L~~L~l 342 (543)
..........+..+++|+.|+++++..... ...+.. ..+.|++|++.+|.... .+. .+..+++|+++++
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 111122334455667778888777654321 011111 24678888888875532 111 3445578888888
Q ss_pred cCccceeeeCccccCCCCCCCC-CCcCeeeccCc
Q 044382 343 RGMSRVNRLGSKFYGDDSPIPF-PCLETLRFEDL 375 (543)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 375 (543)
++|. ++..+..-... ....+ ++|+++++.+.
T Consensus 286 ~~N~-l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 286 RGNK-FGEEGAQLLAE-SLLEPGNELESLWVKDD 317 (319)
T ss_pred CCCC-CcHHHHHHHHH-HHhhcCCchhhcccCCC
Confidence 8874 22211100000 02234 67777777653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-13 Score=128.94 Aligned_cols=282 Identities=21% Similarity=0.158 Sum_probs=169.3
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCcc-----ccCccccCcccccEEecCCCCccc-------cchhhhcc
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-----ELPDSIGDLRYLRYLNLSGTVIRT-------LPESVNKL 149 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~~~~l 149 (543)
++.++.+.+. .+...+..+.+|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+
T Consensus 4 ~L~~~~l~~~---~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 4 SLKGELLKTE---RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccCccccc---chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4566666542 33333337888999999999974 355566788889999999886652 34566778
Q ss_pred cccceeecCCCchhhhhhHHHhhhcc---cceeecCCCCCccc----cccccccc-cccccccceEecCCCCCChhhhcc
Q 044382 150 YNLHTLLLEGCRRLKKLCADMGNLIK---LHHLNDSNTDSLEE----MPLGIGKL-TCLQTLCNFVVGKDSGSGLRELKS 221 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~~~~l~~---L~~L~l~~~~~~~~----lp~~l~~l-~~L~~L~~~~~~~~~~~~~~~l~~ 221 (543)
++|+.|++++|......+..+..+.+ |++|++++|..... +...+..+ ++|+.|++..+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~------------ 148 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR------------ 148 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc------------
Confidence 89999999998655555555666665 99999999883311 12223334 455555332221
Q ss_pred ccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCC
Q 044382 222 LIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTK 301 (543)
Q Consensus 222 l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 301 (543)
............+..+++|++|+++++..++ .........+...++|++|+++++.+..
T Consensus 149 --------------l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 149 --------------LEGASCEALAKALRANRDLKELNLANNGIGD-------AGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred --------------CCchHHHHHHHHHHhCCCcCEEECcCCCCch-------HHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 1111111222336667889999998876521 1112233445566899999999987542
Q ss_pred C-----CCCCCCCCCCCccEEEeecCCCCC-CCCCC-----CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCee
Q 044382 302 F-----PTWLGDSSFLNLVTLKFEDCGMCT-ALPSV-----GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETL 370 (543)
Q Consensus 302 ~-----~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~-----~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L 370 (543)
. ...+. .+++|++|++++|...+ .+..+ ...+.|++|++++|. ++..+...... ....+++|+++
T Consensus 208 ~~~~~l~~~~~--~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~-~~~~~~~L~~l 283 (319)
T cd00116 208 EGASALAETLA--SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAE-VLAEKESLLEL 283 (319)
T ss_pred HHHHHHHHHhc--ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHH-HHhcCCCccEE
Confidence 2 22232 37899999999986543 11111 124799999999984 33211110000 02346899999
Q ss_pred eccCcccccccccCCCCCCCCCC-CcccEEeeccC
Q 044382 371 RFEDLQEWEEWIPHGSSQGVERF-PKLRELHILRC 404 (543)
Q Consensus 371 ~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c 404 (543)
++.++. +.........+....+ +.|+.+++.+.
T Consensus 284 ~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 284 DLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 999854 3322111111112344 68888888773
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-10 Score=99.31 Aligned_cols=124 Identities=26% Similarity=0.310 Sum_probs=43.7
Q ss_pred CCCceEEeecccCCCccccccccccccccc-cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhh-hcc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-NKL 149 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~l 149 (543)
+.+...+..+++++|.+.. ...++ .+.+|++|++++|.++.+. .+..+++|++|++++|.++++++.+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~------Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST------IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccccccc------ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhC
Confidence 3333334444577777664 12233 4667888888888877764 4677888888888888888776555 357
Q ss_pred cccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCcccccc----cccccccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPL----GIGKLTCLQTLC 204 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~ 204 (543)
++|+.|++++| .+..+. ..+..+++|+.|++.+|. +...+. .+..+++|+.|+
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeC
Confidence 88888888876 443332 235677888888888887 444332 255677777775
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-10 Score=96.02 Aligned_cols=125 Identities=25% Similarity=0.294 Sum_probs=52.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccc-cCc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSI-GDL 126 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~-~~l 126 (543)
.++++|++.+|.+..++.++. .+.+|++| ++++|.+.. ...+..++.|++|++++|.++.+++.+ ..+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~--~l~~L~~L---~Ls~N~I~~------l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGA--TLDKLEVL---DLSNNQITK------LEGLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp -----------------S--T--T-TT--EE---E-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred cccccccccccccccccchhh--hhcCCCEE---ECCCCCCcc------ccCccChhhhhhcccCCCCCCccccchHHhC
Confidence 357999999999866544221 24455555 699999986 234558999999999999999987655 469
Q ss_pred ccccEEecCCCCcccc--chhhhcccccceeecCCCchhhhhh----HHHhhhcccceeecCCC
Q 044382 127 RYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLKKLC----ADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~ 184 (543)
++|++|++++|.|.++ -..+..+++|++|++.+|. +...+ ..+..+|+|+.||-...
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999999988865 3567889999999999984 33222 34779999999987543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-10 Score=107.45 Aligned_cols=197 Identities=18% Similarity=0.219 Sum_probs=92.8
Q ss_pred CCCCccEEEeecCCCCCCCC---CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCC
Q 044382 310 SFLNLVTLKFEDCGMCTALP---SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGS 386 (543)
Q Consensus 310 ~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 386 (543)
.+.+|+.+.+.++.. ...+ ....||+++.|++++|- +..+.... .....+|+|+.|+++.+....-+ ....
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~---~i~eqLp~Le~LNls~Nrl~~~~-~s~~ 192 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVL---KIAEQLPSLENLNLSSNRLSNFI-SSNT 192 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhh-HHhHHHHH---HHHHhcccchhcccccccccCCc-cccc
Confidence 366777777766533 2222 34567777777776652 11111000 00244666666666653221111 1111
Q ss_pred CCCCCCCCcccEEeeccCcCcc----CCCCCCCCCccEEEEecccCccc---ccCCCCccceEEEcCCCCeeee--cccC
Q 044382 387 SQGVERFPKLRELHILRCSKLQ----GTFPEHLPALEMLVIVECNELSI---SIASLPALCKMEIGGCKKVVWR--SATD 457 (543)
Q Consensus 387 ~~~~~~~~~L~~L~l~~c~~l~----~~lp~~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~ 457 (543)
...++.|+.|.|+.| +++ +.+-..+|+|+.|.+..+..+.. ....+..|+.|+|++|+..+.+ ....
T Consensus 193 ---~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 193 ---TLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred ---hhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 234566666666666 332 11223456666666655532211 1111555666666666655543 3445
Q ss_pred CCCCCceEEEcCCCCCcccCCC------cCCCCCCccEEecccCCCCccccccCccccccCCccceEee
Q 044382 458 HLGSQNSVVCRDTSNQVFLSGP------LKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLI 520 (543)
Q Consensus 458 ~~~~L~~L~l~~c~~l~~l~~~------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l 520 (543)
.++.|+.|.++.| .+.++... ....+++|+.|++.. +++..++. -..+..+++|+.|.+
T Consensus 269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~s--l~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRS--LNHLRTLENLKHLRI 333 (505)
T ss_pred cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccc--cchhhccchhhhhhc
Confidence 5666666666663 44443211 123456666666666 34443321 113333455555544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-10 Score=99.98 Aligned_cols=133 Identities=23% Similarity=0.265 Sum_probs=78.9
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG 124 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~ 124 (543)
.-|+.++.+++++|.+..+.. .+.-.++++.|. ++.|.+.. ...+..+++|..||||+|.++.+-.+-.
T Consensus 281 dTWq~LtelDLS~N~I~~iDE--SvKL~Pkir~L~---lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDE--SVKLAPKLRRLI---LSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred chHhhhhhccccccchhhhhh--hhhhccceeEEe---ccccceee------ehhhhhcccceEeecccchhHhhhhhHh
Confidence 456667777777776654432 222234555443 66666553 2234466677777777776665544445
Q ss_pred CcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCccccc
Q 044382 125 DLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMP 191 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp 191 (543)
.+-+.++|.|++|.+..+ .+++++.+|..||+++| .++.+. ..||++|.|+++.+.+|. +..+|
T Consensus 350 KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhcCEeeeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 666677777777766665 45666777777777765 344443 336677777777777666 44443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-11 Score=111.66 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=93.2
Q ss_pred CcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCC----CCCCCCCccEEEEecccCccc-----ccCCC
Q 044382 366 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGT----FPEHLPALEMLVIVECNELSI-----SIASL 436 (543)
Q Consensus 366 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----lp~~l~~L~~L~l~~~~~l~~-----~~~~~ 436 (543)
-+.++++..|..+++.....+ ...+..|+.|+.++|..++.. +-+..++|+.|.+..|..... .-...
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i---~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLI---ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred HhhccchhhhccccchHHHHH---hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 344444444444444332222 234556666666666554411 113456666666666654431 12236
Q ss_pred CccceEEEcCCCCee---eecccCCCCCCceEEEcCCCCCcccCC----CcCCCCCCccEEecccCCCCccccccCcccc
Q 044382 437 PALCKMEIGGCKKVV---WRSATDHLGSQNSVVCRDTSNQVFLSG----PLKPRIPKLEELKINNIQNETCIWKSHNELL 509 (543)
Q Consensus 437 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l 509 (543)
+.|+.+++.+|...+ +.....+++.|++|.+++|..+++... ..-..+..|+.+.+.+|+.++.-. -+.+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~---Le~l 422 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT---LEHL 422 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH---HHHH
Confidence 667777777665533 334445677777777777766665411 112345667777777777776543 1245
Q ss_pred ccCCccceEeeccCCCCcccchhhhHHH
Q 044382 510 QDICSLKRLLITSCPKLQSLVAEEEKDQ 537 (543)
Q Consensus 510 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 537 (543)
..+++|+.+++.+|..+++-+.....-.
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred hhCcccceeeeechhhhhhhhhHHHHhh
Confidence 5567777788777777776555444433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-09 Score=103.18 Aligned_cols=158 Identities=21% Similarity=0.166 Sum_probs=105.0
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccc-cccccccccccCCeeeEEEecCCCccccCcc-
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGY-LACSILPKLFKLQRLRVFSLRGYHIYELPDS- 122 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~-~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~- 122 (543)
.-.+++|.+++.+........=+....+++++.|. ++.|-+... .--.+.. .+++|+.|+|+.|.+....++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~Ld---LS~NL~~nw~~v~~i~e---qLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLD---LSRNLFHNWFPVLKIAE---QLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeec---chhhhHHhHHHHHHHHH---hcccchhcccccccccCCcccc
Confidence 34467888888876543222103445677888775 888877642 1123333 889999999999987644332
Q ss_pred -ccCcccccEEecCCCCcc--ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc--ccccc
Q 044382 123 -IGDLRYLRYLNLSGTVIR--TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL--GIGKL 197 (543)
Q Consensus 123 -~~~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~l~~l 197 (543)
-..+.+|+.|.|+.|+++ ++-.....+|+|+.|++.+|..+..-.....-+..|++||+++|. +...+. .++.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccc
Confidence 247889999999999887 344445678999999998875332222224467788999999998 555553 36778
Q ss_pred cccccccceEec
Q 044382 198 TCLQTLCNFVVG 209 (543)
Q Consensus 198 ~~L~~L~~~~~~ 209 (543)
+.|+.|.+..++
T Consensus 271 ~~L~~Lnls~tg 282 (505)
T KOG3207|consen 271 PGLNQLNLSSTG 282 (505)
T ss_pred cchhhhhccccC
Confidence 888888655444
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.8e-09 Score=103.18 Aligned_cols=102 Identities=31% Similarity=0.422 Sum_probs=84.2
Q ss_pred cCCeeeEEEecCCCccccCccccCcc-cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLR-YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
.+..++.|++.+|.+..++.....+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 55788999999999988888777774 899999999999988888889999999999987 6788887666888999999
Q ss_pred cCCCCCccccccccccccccccccc
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
+++|. +..+|..++....|+++..
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDL 216 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhh
Confidence 99998 8888876666666776643
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-10 Score=108.08 Aligned_cols=135 Identities=23% Similarity=0.355 Sum_probs=81.1
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~ 127 (543)
.+....+++.|++.... .++..|..|..+. +..|.+. .++.++.++..|++|+|+.|++..+|..++.|
T Consensus 75 tdt~~aDlsrNR~~elp--~~~~~f~~Le~li---Ly~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l- 143 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELP--EEACAFVSLESLI---LYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL- 143 (722)
T ss_pred cchhhhhccccccccCc--hHHHHHHHHHHHH---HHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcC-
Confidence 44555666666664332 2222233344343 5555544 34556666677777777777766666655433
Q ss_pred cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccc
Q 044382 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIG 195 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~ 195 (543)
-|++|-+++|.++.+|+.++.+..|..||.+.| .+..+|..++.+.+|+.|++..|. ...+|+++.
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~-l~~lp~El~ 209 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC 209 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh
Confidence 366777777777777766666666777777665 566666666667777777776666 555665554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-10 Score=107.63 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=142.9
Q ss_pred CCcEEEEeccCCCCCCCC-CCCCCCCCccEEEeecCCCCCCCC---CCCCCCccceeeecCccceeeeCccccCCCCCCC
Q 044382 288 NLEQFGICGYGGTKFPTW-LGDSSFLNLVTLKFEDCGMCTALP---SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIP 363 (543)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 363 (543)
-|+.|++.+......... .....+|++++|.+.+|..+++-. .-..|++|+++++..|..++....+..+ ..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----EG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----Hh
Confidence 466777776654322111 111246777777777776555433 2245777777777777777665544322 45
Q ss_pred CCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC----CCCCCCCCccEEEEecccCcccc-----cC
Q 044382 364 FPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG----TFPEHLPALEMLVIVECNELSIS-----IA 434 (543)
Q Consensus 364 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~----~lp~~l~~L~~L~l~~~~~l~~~-----~~ 434 (543)
+++|++++++.|+.+........ ...+..++.+.+.+|..+.. ....+.+.+.++++.+|..++.. -.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQAL---QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHH---hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 77777777777776655322222 34555667776667644331 11234555666666677655532 12
Q ss_pred CCCccceEEEcCCCCee---eecccCCCCCCceEEEcCCCCCcccCCCcC-CCCCCccEEecccCCCCccccccCccccc
Q 044382 435 SLPALCKMEIGGCKKVV---WRSATDHLGSQNSVVCRDTSNQVFLSGPLK-PRIPKLEELKINNIQNETCIWKSHNELLQ 510 (543)
Q Consensus 435 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~l~ 510 (543)
.+..|+.|..++|...+ +...-.+.++|+.|.+.+|..+++.....+ .+.+.|+.+++.+|-..+.-.. ..--.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL--~sls~ 369 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL--ASLSR 369 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH--hhhcc
Confidence 27778888888887754 233345678889999998887777654333 5778899999888866553311 11234
Q ss_pred cCCccceEeeccCCCCccc
Q 044382 511 DICSLKRLLITSCPKLQSL 529 (543)
Q Consensus 511 ~l~~L~~L~l~~c~~l~~~ 529 (543)
+++.||.+.++.|..++.-
T Consensus 370 ~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDE 388 (483)
T ss_pred CCchhccCChhhhhhhhhh
Confidence 4789999999998777664
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6e-09 Score=93.27 Aligned_cols=100 Identities=28% Similarity=0.273 Sum_probs=51.1
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
-++.|+.||||+|.|+.+.+++.-.+.+++|+++.|.+..+. .+..+++|+.||+++| .+..+...-.++.|.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 455666666666666655555555566666666666655542 2555666666666654 23333222224445555555
Q ss_pred CCCCCccccccccccccccccccc
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
.+|. ++.+ .++.++-+|..|+.
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDL 381 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccc
Confidence 5544 3333 23444444444433
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-08 Score=69.11 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=45.1
Q ss_pred CeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCc
Q 044382 104 QRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~ 161 (543)
++|++|++++|.++.+|. .|.++++|++|++++|.++.+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888887764 5788888888888888888774 467788888888888763
|
... |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-08 Score=97.99 Aligned_cols=123 Identities=28% Similarity=0.409 Sum_probs=99.0
Q ss_pred cCCCceEEeecccCCCccccccccccccccccCC-eeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcc
Q 044382 71 DIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQ-RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKL 149 (543)
Q Consensus 71 ~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l 149 (543)
.++.+..| ++..|.+. .+++....+. +|+.|++++|.+..+|..+..+++|+.|++++|.+.++|...+.+
T Consensus 114 ~~~~l~~L---~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 114 ELTNLTSL---DLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred cccceeEE---ecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 33445555 58888777 3445445664 999999999999999888999999999999999999999888899
Q ss_pred cccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL 203 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 203 (543)
++|+.|++++| .+..+|..+..+..|++|.+++|. +...+..+.+++++..+
T Consensus 186 ~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 186 SNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 99999999997 788899877778889999999997 44455556566555555
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7e-08 Score=101.37 Aligned_cols=92 Identities=26% Similarity=0.359 Sum_probs=78.0
Q ss_pred eeeEEEecCCCcc-ccCccccCcccccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIY-ELPDSIGDLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|++++|...+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899998877 56888889999999999999887 678888999999999999987667888888899999999999
Q ss_pred CCCCcccccccccc
Q 044382 183 NTDSLEEMPLGIGK 196 (543)
Q Consensus 183 ~~~~~~~lp~~l~~ 196 (543)
+|.+.+.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99877788877664
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-08 Score=67.28 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCC
Q 044382 460 GSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCP 524 (543)
Q Consensus 460 ~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~ 524 (543)
|+|++|++++| .++.++...|+.+++|++|++++ +.++.++ +..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~---~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIP---PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEE---TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccC---HHHHcCCCCCCEEeCcCCc
Confidence 56788888885 88888887788888888888887 5788886 5578888888888888874
|
... |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-08 Score=92.43 Aligned_cols=206 Identities=19% Similarity=0.160 Sum_probs=109.6
Q ss_pred cccccccCCeeeEEEecCCCcc-----ccCccccCcccccEEecCCC----Cccccchhh-------hcccccceeecCC
Q 044382 96 ILPKLFKLQRLRVFSLRGYHIY-----ELPDSIGDLRYLRYLNLSGT----VIRTLPESV-------NKLYNLHTLLLEG 159 (543)
Q Consensus 96 ~~~~~~~l~~L~~L~Ls~~~l~-----~lp~~~~~l~~L~~L~L~~~----~i~~lp~~~-------~~l~~L~~L~l~~ 159 (543)
..+.+..+..++.++|++|.++ .+...+.+.++|+.-++++- ...++|+.+ -.+++|++||+++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3445557788888899998876 23445677778888888764 222455443 3566888888888
Q ss_pred Cchhhhhh----HHHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccc
Q 044382 160 CRRLKKLC----ADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKL 234 (543)
Q Consensus 160 ~~~~~~l~----~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l 234 (543)
|..-...+ .-+..+..|++|.+.+|. ++.... .+++ .|.+|.. ....++-..|| .+....-
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~~----------~kk~~~~~~Lr-v~i~~rN 167 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELAV----------NKKAASKPKLR-VFICGRN 167 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHHH----------HhccCCCcceE-EEEeecc
Confidence 75433222 335577888888888888 443221 1221 1222210 00111112233 2222221
Q ss_pred cCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC-----CCCCCC
Q 044382 235 ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP-----TWLGDS 309 (543)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~ 309 (543)
.............|..++.|+.+.+..|++. .....-....+..+++|+.|++.+|.++.-. .-+ +
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~-------~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~ 238 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIR-------PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--S 238 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEeccccc-------CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--c
Confidence 1122222233334666677888877776651 1111233455666777777777777643211 111 1
Q ss_pred CCCCccEEEeecCCC
Q 044382 310 SFLNLVTLKFEDCGM 324 (543)
Q Consensus 310 ~l~~L~~L~l~~~~~ 324 (543)
.++.|+.|++++|..
T Consensus 239 s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLL 253 (382)
T ss_pred ccchheeeccccccc
Confidence 245666666666644
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-08 Score=97.41 Aligned_cols=148 Identities=25% Similarity=0.283 Sum_probs=120.2
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYL 129 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L 129 (543)
+..+.+..|.+..+.. ...+|..|.+++++.|+++ ..|..++.+ -|++|.+++|+++.+|+.++.+..|
T Consensus 100 Le~liLy~n~~r~ip~-----~i~~L~~lt~l~ls~NqlS-----~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPE-----AICNLEALTFLDLSSNQLS-----HLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTL 168 (722)
T ss_pred HHHHHHHhccceecch-----hhhhhhHHHHhhhccchhh-----cCChhhhcC-cceeEEEecCccccCCcccccchhH
Confidence 4445556666544332 2457788888899999998 455555566 5899999999999999999999999
Q ss_pred cEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEec
Q 044382 130 RYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVG 209 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~ 209 (543)
..||.+.|.+..+|..++.+..|+.|.++.| .+..+|.++..| .|..||++.|+ +..+|-.|.+|+.|+.|.+..+.
T Consensus 169 ~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 169 AHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccCC
Confidence 9999999999999999999999999999996 677888888844 78889999999 99999999999999998654444
Q ss_pred CC
Q 044382 210 KD 211 (543)
Q Consensus 210 ~~ 211 (543)
..
T Consensus 246 Lq 247 (722)
T KOG0532|consen 246 LQ 247 (722)
T ss_pred CC
Confidence 33
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-07 Score=98.03 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=40.3
Q ss_pred ccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 129 LRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 129 L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
++.|+|++|.+. .+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 445555555554 34555555555555555555433445544555555555555555544445555555555555543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-07 Score=87.28 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=94.6
Q ss_pred CCCCceEEEeeccccCCccchhhhh-cCCCceEEeecccCCCccccccccc-------cccccccCCeeeEEEecCCCcc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLY-DIQHLRTFLPVRLSNGFLSGYLACS-------ILPKLFKLQRLRVFSLRGYHIY 117 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~~~l~~n~~~~~~~~~-------~~~~~~~l~~L~~L~Ls~~~l~ 117 (543)
....++.+++++|.+..... .+.. .+...+.|+..++++- +.|+.-.. +.+++-.+++|++|+||.|.++
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa-~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAA-RAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ccCceEEEeccCCchhHHHH-HHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34668999999998865543 2221 2333344444445432 23332222 2345557789999999999876
Q ss_pred --ccC---ccccCcccccEEecCCCCccccch-h-------------hhcccccceeecCCCchh----hhhhHHHhhhc
Q 044382 118 --ELP---DSIGDLRYLRYLNLSGTVIRTLPE-S-------------VNKLYNLHTLLLEGCRRL----KKLCADMGNLI 174 (543)
Q Consensus 118 --~lp---~~~~~l~~L~~L~L~~~~i~~lp~-~-------------~~~l~~L~~L~l~~~~~~----~~l~~~~~~l~ 174 (543)
.++ +-+.++..|+.|.|.+|++..... . +.+-++|+++..++|+.- ..+...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 222 235779999999999997764311 1 223457888888876432 22223355667
Q ss_pred ccceeecCCCCCccc-----cccccccccccccccce
Q 044382 175 KLHHLNDSNTDSLEE-----MPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 175 ~L~~L~l~~~~~~~~-----lp~~l~~l~~L~~L~~~ 206 (543)
.|+.+.+..|. +.. +...+..+++|+.|++.
T Consensus 186 ~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 186 TLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLR 221 (382)
T ss_pred ccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecc
Confidence 88888887777 332 12335667777777543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.6e-07 Score=57.31 Aligned_cols=40 Identities=30% Similarity=0.471 Sum_probs=27.7
Q ss_pred CeeeEEEecCCCccccCccccCcccccEEecCCCCccccc
Q 044382 104 QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLP 143 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp 143 (543)
++|++|++++|+++.+|..+++|++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777777654
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-07 Score=94.93 Aligned_cols=103 Identities=25% Similarity=0.312 Sum_probs=67.6
Q ss_pred ccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccce
Q 044382 99 KLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178 (543)
Q Consensus 99 ~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 178 (543)
.+..+..|+.|++.+|.|..+...+..+.+|++|++++|.|+++ ..+..++.|+.|++.+| .+..+.. +..+++|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhccC-Cccchhhhc
Confidence 34567777777777777777655466777777777777777776 34566667777777776 4544433 555777777
Q ss_pred eecCCCCCccccccc-cccccccccccc
Q 044382 179 LNDSNTDSLEEMPLG-IGKLTCLQTLCN 205 (543)
Q Consensus 179 L~l~~~~~~~~lp~~-l~~l~~L~~L~~ 205 (543)
+++++|. +..+... +..+.+++.+.+
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 7777777 5544332 355556665543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.2e-08 Score=86.47 Aligned_cols=154 Identities=22% Similarity=0.134 Sum_probs=105.9
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCC-ccccC--cccc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYH-IYELP--DSIG 124 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~lp--~~~~ 124 (543)
..+++|+++...++.-....-++.+++|+.| .+.++++.. .+...+.+-.+|+.|+++.|. ++... --+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~l---SlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNL---SLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhc---cccccccCc----HHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 4588999999877554444445566666665 488888876 666777788999999999987 77442 2368
Q ss_pred CcccccEEecCCCCcc-ccch-hh-hcccccceeecCCCchh---hhhhHHHhhhcccceeecCCCCCccc-cccccccc
Q 044382 125 DLRYLRYLNLSGTVIR-TLPE-SV-NKLYNLHTLLLEGCRRL---KKLCADMGNLIKLHHLNDSNTDSLEE-MPLGIGKL 197 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~-~lp~-~~-~~l~~L~~L~l~~~~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-lp~~l~~l 197 (543)
+|+.|..|+|++|.+. +... .+ .--++|..|++++++.- ..+..-..++++|.+||+++|..++. ....+-++
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 9999999999999665 2211 11 22467888899887542 33333356899999999999875554 22345667
Q ss_pred cccccccceEe
Q 044382 198 TCLQTLCNFVV 208 (543)
Q Consensus 198 ~~L~~L~~~~~ 208 (543)
+.|++|++..+
T Consensus 338 ~~L~~lSlsRC 348 (419)
T KOG2120|consen 338 NYLQHLSLSRC 348 (419)
T ss_pred chheeeehhhh
Confidence 77777754433
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-07 Score=85.03 Aligned_cols=62 Identities=23% Similarity=0.170 Sum_probs=35.1
Q ss_pred CCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCC--CCCCCCCCCccceeeecCc
Q 044382 284 KPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCT--ALPSVGQLPSLKHLTVRGM 345 (543)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~ 345 (543)
..+++|..|+++++...+-..+.....++.|++|.++.|..+. .+-.+...|.|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 4566777777766542221111111136677777777776543 2224567777888877766
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=76.24 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=36.9
Q ss_pred cccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccce
Q 044382 281 DMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRV 348 (543)
Q Consensus 281 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 348 (543)
..+..+.+++.|.++++....+|. + .++|++|.+.+|.....+|.. -.++|++|++++|..+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~-L----P~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV-L----PNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEI 107 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC-C----CCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccc
Confidence 334455777788888776666652 1 335777777777665555521 1246666666666433
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-07 Score=74.30 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=74.2
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccc-cCCeeeEEEecCCCccccCccccCc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
.....++++.+.+..+. +..+.+.+...|...++++|.+.. ||+.|. .++.++.|++++|.++++|..+..+
T Consensus 27 kE~h~ldLssc~lm~i~--davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisdvPeE~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIA--DAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISDVPEELAAM 99 (177)
T ss_pred HHhhhcccccchhhHHH--HHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhhchHHHhhh
Confidence 44556666666543222 444556666666666777777773 333332 4557777777777777777777777
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHH
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCAD 169 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~ 169 (543)
+.|+.|+++.|.+...|..+..|.+|-+||..+| ....+|.+
T Consensus 100 ~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 100 PALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred HHhhhcccccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 7788888877777777777777777777777765 34445543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.7e-06 Score=53.39 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=26.3
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhh
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKL 166 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l 166 (543)
++|++|++++|.++++|+.+++|++|++|++++| .+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4677777777777777776777777777777776 34443
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.6e-07 Score=90.34 Aligned_cols=129 Identities=20% Similarity=0.191 Sum_probs=96.6
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS 122 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~ 122 (543)
..-.|.++...+++.|...... .. +.-+..|..++++.|.+.. ...+..+++|++|||++|.+..+|.-
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD--~S---Lqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l 227 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMD--ES---LQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQL 227 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHH--HH---HHHHHHhhhhccchhhhhh------hHHHHhcccccccccccchhcccccc
Confidence 3456788889999998774333 22 3334445555699998886 22555899999999999999988752
Q ss_pred -ccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh--HHHhhhcccceeecCCCC
Q 044382 123 -IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 123 -~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~ 185 (543)
-..++ |+.|.+++|.++.+ -++.+|.+|+.||+++|- +.... ..++.|..|..|.+.||.
T Consensus 228 ~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 228 SMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhhhh-heeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 33455 99999999999988 568899999999999973 32221 227788999999999998
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.3e-06 Score=87.82 Aligned_cols=137 Identities=19% Similarity=0.168 Sum_probs=94.2
Q ss_pred CCCCceEEEeeccccCCccchhhh-hcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDL-YDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~ 124 (543)
...++++|++.+...-...-.... .-+|.|++|.+-+.+ +. .+.|..-..++++|+.||+|+++++.+ .+++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~---~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ---FD---NDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce---ec---chhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 347799999988654222111222 357889999854333 22 123444445999999999999999888 6789
Q ss_pred CcccccEEecCCCCcccc--chhhhcccccceeecCCCchhhh--hh----HHHhhhcccceeecCCCCCccc
Q 044382 125 DLRYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLKK--LC----ADMGNLIKLHHLNDSNTDSLEE 189 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~--l~----~~~~~l~~L~~L~l~~~~~~~~ 189 (543)
++++|++|.+.+-.+..- -..+..|++|+.||+|....... +. .--..||+|+.||.+++.....
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999999999988776632 24678999999999997432211 11 1122589999999998884443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-06 Score=69.37 Aligned_cols=115 Identities=23% Similarity=0.245 Sum_probs=83.9
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc-CcccccEEecCCCCccccchhhhccccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG-DLRYLRYLNLSGTVIRTLPESVNKLYNL 152 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L 152 (543)
.-..+..++++..++- +++ +....+....+|+..+|++|.+..+|..|. ..+...+|++++|.+.++|..+..++.|
T Consensus 25 dakE~h~ldLssc~lm-~i~-davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLM-YIA-DAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred HHHHhhhcccccchhh-HHH-HHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence 3333444455554443 233 333445566788888999999998888774 5568899999999999999889999999
Q ss_pred ceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc
Q 044382 153 HTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL 192 (543)
Q Consensus 153 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~ 192 (543)
+.|+++.| .+...|..+..|.+|-.|+..+|. +..+|-
T Consensus 103 r~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 103 RSLNLRFN-PLNAEPRVIAPLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred hhcccccC-ccccchHHHHHHHhHHHhcCCCCc-cccCcH
Confidence 99999987 566667777778888888888887 555553
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-06 Score=87.68 Aligned_cols=103 Identities=25% Similarity=0.317 Sum_probs=82.0
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
.+..+..+.+..|.+..+-..+..+.+|.+|++.+|.+..+...+..+++|++|++++| .+..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 55677777788888887555688899999999999999998666889999999999997 6777654 788889999999
Q ss_pred CCCCCccccccccccccccccccceEe
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
.+|. +..+. ++..++.|+.+++.+.
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYN 172 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcc
Confidence 9999 66653 4555677777755444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=70.36 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=6.2
Q ss_pred Cccccceeeeeee
Q 044382 250 GKKNLKELSLNWT 262 (543)
Q Consensus 250 ~~~~L~~L~l~~~ 262 (543)
.+.+++.|+++.+
T Consensus 50 ~~~~l~~L~Is~c 62 (426)
T PRK15386 50 EARASGRLYIKDC 62 (426)
T ss_pred HhcCCCEEEeCCC
Confidence 3445555555443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.6e-07 Score=89.84 Aligned_cols=148 Identities=23% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccc---cc---cccccccccCCeeeEEEecCCCcccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGY---LA---CSILPKLFKLQRLRVFSLRGYHIYEL 119 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~---~~---~~~~~~~~~l~~L~~L~Ls~~~l~~l 119 (543)
-+..+|+|.+.++++....-+..+ ...|++|++.+ .+... +. ..+..+ ..+..|.+-+.++|.++.+
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~l--r~qLe~LIC~~----Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQEL--RHQLEKLICHN----SLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHH--HHhhhhhhhhc----cHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHHhH
Confidence 457899999999877543322222 23455554211 11100 00 000000 0123344444444444444
Q ss_pred CccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHH-HhhhcccceeecCCCCCcccccccccccc
Q 044382 120 PDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEMPLGIGKLT 198 (543)
Q Consensus 120 p~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~l~~l~ 198 (543)
-.++.-++.|+.|||++|.+++. +.+..|++|++||+++| .+..+|.. ...+. |+.|.+++|. ++.+ .++.+++
T Consensus 180 D~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~Lk 254 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLK 254 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccc-hhccccccchhhhh-heeeeecccH-HHhh-hhHHhhh
Confidence 44444445555555555554443 24445555555555554 33333321 11222 4555555544 3333 3344444
Q ss_pred ccccccc
Q 044382 199 CLQTLCN 205 (543)
Q Consensus 199 ~L~~L~~ 205 (543)
+|+.|++
T Consensus 255 sL~~LDl 261 (1096)
T KOG1859|consen 255 SLYGLDL 261 (1096)
T ss_pred hhhccch
Confidence 4444443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.6e-06 Score=72.48 Aligned_cols=208 Identities=20% Similarity=0.154 Sum_probs=110.6
Q ss_pred ccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCcc----ccc-------hhhhcccccceeecCCC
Q 044382 97 LPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIR----TLP-------ESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 97 ~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~----~lp-------~~~~~l~~L~~L~l~~~ 160 (543)
+..+..+..+..++||+|.|+. +...+.+-.+|++-+++.-... ++| ..+-+|++|+.++++.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3344456777888888887762 3344566777777777654111 233 34457888999999888
Q ss_pred chhhhhhH----HHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceeccccc
Q 044382 161 RRLKKLCA----DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLE 235 (543)
Q Consensus 161 ~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~ 235 (543)
..-...|. -+++-+.|.+|.+++|. ++.+.. .+++ .|.+|.. . ....+-+.++ .+....-.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk--al~~la~--n--------KKaa~kp~Le-~vicgrNR 168 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK--ALFHLAY--N--------KKAADKPKLE-VVICGRNR 168 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH--HHHHHHH--H--------hhhccCCCce-EEEeccch
Confidence 65444443 35677889999999888 554432 2331 2333310 0 0001111222 11111111
Q ss_pred CcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCC-C--CCCCC
Q 044382 236 NIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWL-G--DSSFL 312 (543)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~--~~~l~ 312 (543)
..+.........+.....|+.+.+..|++- -.-........+..+.+|+.|++.+|.++.....+ . -+..+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIr------pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIR------PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcC------cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 111122222333555678888888887761 11112233445667788888888887654321110 0 01134
Q ss_pred CccEEEeecCCC
Q 044382 313 NLVTLKFEDCGM 324 (543)
Q Consensus 313 ~L~~L~l~~~~~ 324 (543)
.|+.|.+.+|-.
T Consensus 243 ~lrEL~lnDCll 254 (388)
T COG5238 243 LLRELRLNDCLL 254 (388)
T ss_pred hhhhccccchhh
Confidence 567777777744
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.4e-05 Score=64.16 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=57.9
Q ss_pred EeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccc-cCcccccEEecCCCCccccc--hhhhcccccce
Q 044382 78 FLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSI-GDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHT 154 (543)
Q Consensus 78 L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~-~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~ 154 (543)
....|+++|++... .-+| +++.|.+|.+.+|.|+.+...+ .-+++|++|.|.+|++.++. ..+..+++|++
T Consensus 44 ~d~iDLtdNdl~~l---~~lp---~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL---DNLP---HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cceecccccchhhc---ccCC---CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 33445666665531 2233 6677777777777777664444 34556777777777666542 33556677777
Q ss_pred eecCCCchhhhhh----HHHhhhcccceeecCCCC
Q 044382 155 LLLEGCRRLKKLC----ADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 155 L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~ 185 (543)
|.+-+| .+..-. -.+.++++|++||.....
T Consensus 118 Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 776665 222222 125567777777776544
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.8e-05 Score=63.65 Aligned_cols=100 Identities=23% Similarity=0.234 Sum_probs=77.7
Q ss_pred CeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhh-hcccccceeecCCCchhhhhhH--HHhhhcccceee
Q 044382 104 QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHLN 180 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~ 180 (543)
.+...+||++|.+..++. |..++.|.+|.+.+|.|+.+-+.+ ..+++|..|.+.+| .+.++.+ .+..+++|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 477789999999887744 778999999999999999995544 46788999999997 5555542 367899999999
Q ss_pred cCCCCCcccccc----ccccccccccccce
Q 044382 181 DSNTDSLEEMPL----GIGKLTCLQTLCNF 206 (543)
Q Consensus 181 l~~~~~~~~lp~----~l~~l~~L~~L~~~ 206 (543)
+-+|. +..-.. .+.++++|+.|+..
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehh
Confidence 99998 554432 26678888888643
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=4.9e-05 Score=80.03 Aligned_cols=103 Identities=26% Similarity=0.384 Sum_probs=61.3
Q ss_pred CcccccEEecCCCCcc--ccchhhh-cccccceeecCCCchh--hhhhHHHhhhcccceeecCCCCCccccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIR--TLPESVN-KLYNLHTLLLEGCRRL--KKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTC 199 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~--~lp~~~~-~l~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 199 (543)
.-.+|++|++++...- .-|..++ .||.|+.|.+++ ..+ +++..-...+++|..||++++. +..+ .+++++++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKN 196 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhcccc
Confidence 3467888888775322 2233443 578888888876 222 2233335578888888888888 6666 67888888
Q ss_pred cccccceEecCCCCCChhhhccccccccceec
Q 044382 200 LQTLCNFVVGKDSGSGLRELKSLIHLQGTLKI 231 (543)
Q Consensus 200 L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~ 231 (543)
|+.|.+..........+..+-+|++|+ .|++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~-vLDI 227 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLR-VLDI 227 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCC-eeec
Confidence 888865444333333344444444444 3433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=3.2e-06 Score=87.37 Aligned_cols=245 Identities=22% Similarity=0.244 Sum_probs=110.9
Q ss_pred CCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEecc-CC-CCCC--CCCCCCCCCCccEEEeecCCC
Q 044382 249 DGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGY-GG-TKFP--TWLGDSSFLNLVTLKFEDCGM 324 (543)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~-~~~~--~~~~~~~l~~L~~L~l~~~~~ 324 (543)
..++.|+.+.+...... ...........+++|+.|.++++ .. ...+ .......+++|+.|++.++..
T Consensus 185 ~~~~~L~~l~l~~~~~~---------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKI---------TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred hhCchhhHhhhcccccC---------ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 34667777776544321 11113344455677777777652 11 1111 011112356677777776654
Q ss_pred CCCCC--CC-CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEee
Q 044382 325 CTALP--SV-GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHI 401 (543)
Q Consensus 325 ~~~~~--~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 401 (543)
+.+.. .+ ..|++|++|.+.+|..++..+....+ ..++.|++|+++.|..+.+...... ...+++|+.+.+
T Consensus 256 isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~----~~~~~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 256 VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA----ERCPSLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKL 328 (482)
T ss_pred cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH----HhcCcccEEeeecCccchHHHHHHH---HHhCcchhhhhh
Confidence 44332 22 23667777766666544433322221 3355566666665555432211111 123444444443
Q ss_pred ccCcCccCCCCCCCCCccEEEEecccCcc------cccCCCCccceEEEcCCCCeeeecccCCCCCCc-eEEEcCCCCCc
Q 044382 402 LRCSKLQGTFPEHLPALEMLVIVECNELS------ISIASLPALCKMEIGGCKKVVWRSATDHLGSQN-SVVCRDTSNQV 474 (543)
Q Consensus 402 ~~c~~l~~~lp~~l~~L~~L~l~~~~~l~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~ 474 (543)
..+.. .+.++.+.+..+.... .....++.++.+.|..+.. .... .+.+.+|+.++
T Consensus 329 ~~~~~--------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 329 LSLNG--------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI----------SDLGLELSLRGCPNLT 390 (482)
T ss_pred hhcCC--------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc----------cCcchHHHhcCCcccc
Confidence 33221 1122222222211111 1122244444444444331 1111 44556666552
Q ss_pred -ccCCCcCCCCCCccEEecccCCCCccccccCcccccc-CCccceEeeccCCCCcccch
Q 044382 475 -FLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD-ICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 475 -~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~-l~~L~~L~l~~c~~l~~~~~ 531 (543)
.+... ......++.|+++.|..++.-... .... +..++.+++.+|+.+.....
T Consensus 391 ~~l~~~-~~~~~~l~~L~l~~~~~~t~~~l~---~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 391 ESLELR-LCRSDSLRVLNLSDCRLVTDKGLR---CLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hHHHHH-hccCCccceEecccCccccccchH---HHhhhhhccccCCccCcccccchhh
Confidence 22211 222333788888888776654321 1222 56778888888877776543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=4.8e-06 Score=86.03 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=36.8
Q ss_pred CCceEEEcCCCCCcccCCCcCCCCCCcc-EEecccCCCCc-cccccCccccccCCccceEeeccCCCCcccc
Q 044382 461 SQNSVVCRDTSNQVFLSGPLKPRIPKLE-ELKINNIQNET-CIWKSHNELLQDICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 461 ~L~~L~l~~c~~l~~l~~~~~~~~~~L~-~L~l~~c~~l~-~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 530 (543)
.+..+.+.+|+.++++.....+ ..... .+.+.+|+.++ .+ .........++.|+++.|...+.-.
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l----~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESL----ELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHH----HHHhccCCccceEecccCccccccc
Confidence 5556666666666655433223 22322 57778888773 22 1122223448999999997666543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0002 Score=64.85 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=37.1
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCccc-cCcccccEEecCCCCcc--ccchhhhcccccceeecC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSI-GDLRYLRYLNLSGTVIR--TLPESVNKLYNLHTLLLE 158 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~-~~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~ 158 (543)
|+.+|.++.- ..++.-+.+|++|++|+++.|.+...-... .-+++|++|-|.+..+. ..-..+..++.++.|.++
T Consensus 77 DL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 77 DLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred hcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence 4666655531 122222336666666666666544211111 23456666666655332 333444555555555555
Q ss_pred CC
Q 044382 159 GC 160 (543)
Q Consensus 159 ~~ 160 (543)
.|
T Consensus 155 ~N 156 (418)
T KOG2982|consen 155 DN 156 (418)
T ss_pred cc
Confidence 44
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=7e-05 Score=67.75 Aligned_cols=203 Identities=16% Similarity=0.149 Sum_probs=127.9
Q ss_pred CCCcEEEEeccCCCCCCCCC-CCCCCCCccEEEeecCCCCC--CCC-CCCCCCccceeeecCccceeeeCccccCCCCCC
Q 044382 287 KNLEQFGICGYGGTKFPTWL-GDSSFLNLVTLKFEDCGMCT--ALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPI 362 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 362 (543)
..++.+.+.++.+.+..... .....+.++.+++.+|...+ ++. .+..+|.|+.|+|+.|+--..|... +.
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l------p~ 118 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL------PL 118 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC------cc
Confidence 34555556665544432221 11246789999999986543 333 5688999999999887533333221 13
Q ss_pred CCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC------CCCCCCCCccEEEEecccCccc-----
Q 044382 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG------TFPEHLPALEMLVIVECNELSI----- 431 (543)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~------~lp~~l~~L~~L~l~~~~~l~~----- 431 (543)
...+|+.|-+.+. .+.-... ......+|.++.|.++. |++.. ...++-+.+++|+...|.....
T Consensus 119 p~~nl~~lVLNgT-~L~w~~~---~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~ 193 (418)
T KOG2982|consen 119 PLKNLRVLVLNGT-GLSWTQS---TSSLDDLPKVTELHMSD-NSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK 193 (418)
T ss_pred cccceEEEEEcCC-CCChhhh---hhhhhcchhhhhhhhcc-chhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence 4668899888773 2221111 12256789999999988 44431 1123455788888888865431
Q ss_pred ccCCCCccceEEEcCCCCee--eecccCCCCCCceEEEcCCCCCcccC-CCcCCCCCCccEEecccCCCCccc
Q 044382 432 SIASLPALCKMEIGGCKKVV--WRSATDHLGSQNSVVCRDTSNQVFLS-GPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 432 ~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
...-++++..+-+..|+..+ .......++.+.-|.++. ++++++. ...+..++.|+.|.+++.+-...+
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 12238888888898887755 334555577777888888 4666554 233778899999988886654443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=3.4e-05 Score=69.07 Aligned_cols=58 Identities=31% Similarity=0.350 Sum_probs=34.8
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccc--hhhhcccccceeecCCC
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~ 160 (543)
+|+.|++|.||-|.|+.+. .+..|++|+.|+|..|.|..+- .-+.++++|+.|++..|
T Consensus 39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 6666666666666666552 2556666666666666665542 23455666666666554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=5.7e-05 Score=67.66 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=79.0
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhH--HHhhhccccee
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHL 179 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L 179 (543)
.+.+.+.|+..+|.+.++ +....++.|++|.|+-|.|+.+ +.+..|++|+.|+|+.| .+.++.. -+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 466788899999998876 3357899999999999999998 45889999999999987 4555543 25688999999
Q ss_pred ecCCCCCccccccc-----cccccccccccc
Q 044382 180 NDSNTDSLEEMPLG-----IGKLTCLQTLCN 205 (543)
Q Consensus 180 ~l~~~~~~~~lp~~-----l~~l~~L~~L~~ 205 (543)
-+..|..-+.-+.. +..+++|++|++
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 99888766654432 556788888864
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00072 Score=60.47 Aligned_cols=90 Identities=29% Similarity=0.307 Sum_probs=57.7
Q ss_pred cCCeeeEEEecCCC--cc-ccCccccCcccccEEecCCCCcccc--chhhhcccccceeecCCCchhh--hh-hHHHhhh
Q 044382 102 KLQRLRVFSLRGYH--IY-ELPDSIGDLRYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLK--KL-CADMGNL 173 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~--l~-~lp~~~~~l~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~--~l-~~~~~~l 173 (543)
.+++|+.|.++.|. +. .++--...+++|++|++++|.+..+ -..+..+.+|..||+.+|.... .- ...+..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 67788888888884 32 3433344568888888888876643 1335677788888888774332 11 1235578
Q ss_pred cccceeecCCCCCcccccc
Q 044382 174 IKLHHLNDSNTDSLEEMPL 192 (543)
Q Consensus 174 ~~L~~L~l~~~~~~~~lp~ 192 (543)
++|.+|+-.... -...|.
T Consensus 143 ~~L~~LD~~dv~-~~Ea~~ 160 (260)
T KOG2739|consen 143 PSLKYLDGCDVD-GEEAPE 160 (260)
T ss_pred hhhccccccccC-Cccccc
Confidence 899988877666 444443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0013 Score=58.93 Aligned_cols=101 Identities=24% Similarity=0.251 Sum_probs=62.8
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCC--Ccc-ccchhhhcccccceeecCCCchhhhhh--HHHhhhccc
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGT--VIR-TLPESVNKLYNLHTLLLEGCRRLKKLC--ADMGNLIKL 176 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L 176 (543)
.+..|+.|++.+..++.+. .+-.+++|++|.++.| ++. .++.....+++|+++.+++|. +..+. ..+.++.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence 5556666666666655442 2456778888888888 444 555555666888888888873 33221 226677788
Q ss_pred ceeecCCCCCcccccc----ccccccccccccc
Q 044382 177 HHLNDSNTDSLEEMPL----GIGKLTCLQTLCN 205 (543)
Q Consensus 177 ~~L~l~~~~~~~~lp~----~l~~l~~L~~L~~ 205 (543)
..|++..|. ...+-. .+.-+++|..|+-
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhccccc
Confidence 888888777 333321 1445677777753
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0018 Score=34.35 Aligned_cols=17 Identities=47% Similarity=0.909 Sum_probs=7.6
Q ss_pred ccEEecCCCCccccchh
Q 044382 129 LRYLNLSGTVIRTLPES 145 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~ 145 (543)
|++||+++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0021 Score=34.09 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=17.9
Q ss_pred eeeEEEecCCCccccCccccCc
Q 044382 105 RLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
+|++|++++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5889999999999888877653
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.00079 Score=57.74 Aligned_cols=67 Identities=18% Similarity=0.079 Sum_probs=34.4
Q ss_pred CCCCceEEEcCCCCCcccCCCcC-CCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcc
Q 044382 459 LGSQNSVVCRDTSNQVFLSGPLK-PRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQS 528 (543)
Q Consensus 459 ~~~L~~L~l~~c~~l~~l~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~ 528 (543)
+++++.|.+.+|..+.+..-+.+ +..++|+.|+|++|+++|+-... ++..+++|+.|.+.+.|.+..
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~---~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA---CLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH---HHHHhhhhHHHHhcCchhhhc
Confidence 44555555555555554332211 23455666666666666655422 455556666666655554443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.0023 Score=54.92 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=50.2
Q ss_pred CCCccceEEEcCCCCee---eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccc
Q 044382 435 SLPALCKMEIGGCKKVV---WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 435 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
.++.++.|.+.+|..+. +...-...++|+.|+|++|+.+++-....+..+++|+.|.+.+.+.+...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 35666677777776655 22222357999999999999999877767788999999999987766654
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.018 Score=28.24 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=4.2
Q ss_pred ccEEecCCCCccc
Q 044382 129 LRYLNLSGTVIRT 141 (543)
Q Consensus 129 L~~L~L~~~~i~~ 141 (543)
|++|++++|.+++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.027 Score=27.56 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=10.9
Q ss_pred CeeeEEEecCCCccccC
Q 044382 104 QRLRVFSLRGYHIYELP 120 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp 120 (543)
++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999988765
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.39 Score=39.09 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=26.2
Q ss_pred CCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcccc
Q 044382 434 ASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIW 502 (543)
Q Consensus 434 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~ 502 (543)
..+++++.+.+.......-..++..+++|+++.+.. .+..++...+.++ +|+.+.+.. .++.++
T Consensus 55 ~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~--~~~~i~ 118 (129)
T PF13306_consen 55 SNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS--NITKIE 118 (129)
T ss_dssp TT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT--B-SS--
T ss_pred ecccccccccccccccccccccccccccccccccCc--cccEEchhhhcCC-CceEEEECC--CccEEC
Confidence 334455555554421111223445566666666654 2555555556555 666666553 344443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.067 Score=48.40 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=96.4
Q ss_pred CCCceEEEeeccccCCccchhhhh-cCCCceEEeecccCCCccc---ccccc---ccccccccCCeeeEEEecCCCcc-c
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLY-DIQHLRTFLPVRLSNGFLS---GYLAC---SILPKLFKLQRLRVFSLRGYHIY-E 118 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~~~l~~n~~~---~~~~~---~~~~~~~~l~~L~~L~Ls~~~l~-~ 118 (543)
...+..+++++|.|....+ .++. .+.+.+.|.+.+.++-... ..+++ -..+++.+|++|+..+||.|.++ .
T Consensus 29 ~d~~~evdLSGNtigtEA~-e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAM-EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHH-HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4568899999999876655 5554 3345556665555543211 11222 23557778999999999999876 3
Q ss_pred cCc----cccCcccccEEecCCCCccccc-hhhh-------------cccccceeecCCCchhhhhhHH-----Hhhhcc
Q 044382 119 LPD----SIGDLRYLRYLNLSGTVIRTLP-ESVN-------------KLYNLHTLLLEGCRRLKKLCAD-----MGNLIK 175 (543)
Q Consensus 119 lp~----~~~~l~~L~~L~L~~~~i~~lp-~~~~-------------~l~~L~~L~l~~~~~~~~l~~~-----~~~l~~ 175 (543)
.|+ -+++-..|.+|.+.+|++..+. .-++ .-|.|++++...|+ +...|.. +..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcC
Confidence 333 3578889999999999776442 1122 35678999888874 3333322 222247
Q ss_pred cceeecCCCCCccc------cccccccccccccccc
Q 044382 176 LHHLNDSNTDSLEE------MPLGIGKLTCLQTLCN 205 (543)
Q Consensus 176 L~~L~l~~~~~~~~------lp~~l~~l~~L~~L~~ 205 (543)
|.++.+..|. ++. +.-++..+.+|+.|++
T Consensus 187 lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDl 221 (388)
T COG5238 187 LKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDL 221 (388)
T ss_pred ceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeec
Confidence 8888887777 331 0122445566776654
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.0044 Score=54.42 Aligned_cols=59 Identities=19% Similarity=0.035 Sum_probs=28.5
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCC
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~ 160 (543)
-+..|..|+++.|.+..+|..++.+..++.+++..|..+.+|.+.+..+++++++.-.+
T Consensus 63 ~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 44444444554444444444444444444444444444444444444454444444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.43 Score=38.83 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCCccEEEEecc-cCcc-cccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEe
Q 044382 414 HLPALEMLVIVEC-NELS-ISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELK 491 (543)
Q Consensus 414 ~l~~L~~L~l~~~-~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~ 491 (543)
...+|+.+.+.+. ..+. ..+..+++|+.+.+.+.-...-..++..+++++++.+.+ .+..++...|..+++|+.+.
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCCEEEECCCeeEeChhhcccccccccccccccccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence 3456777776532 1111 245557788889887752222345677787899999976 66667777788899999999
Q ss_pred cccCCCCccccccCccccccCCccceEeeccCCCCcccchh
Q 044382 492 INNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAE 532 (543)
Q Consensus 492 l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 532 (543)
+.. +++.++ ...+... +|+.+.+.+ +++.++..
T Consensus 88 ~~~--~~~~i~---~~~f~~~-~l~~i~~~~--~~~~i~~~ 120 (129)
T PF13306_consen 88 IPS--NITEIG---SSSFSNC-NLKEINIPS--NITKIEEN 120 (129)
T ss_dssp ETT--T-BEEH---TTTTTT--T--EEE-TT--B-SS----
T ss_pred cCc--cccEEc---hhhhcCC-CceEEEECC--CccEECCc
Confidence 865 477776 3367776 888887764 55555443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.0083 Score=52.74 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred ccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccce
Q 044382 99 KLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178 (543)
Q Consensus 99 ~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 178 (543)
.+..+++.++||++.|.+..+-..|+.+..|..|+++.|.+..+|..++.+..++.++...| .....|...++.++++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 34467788889998888877777778888888899988888888888888888888888775 67778877888888888
Q ss_pred eecCCCCCcc
Q 044382 179 LNDSNTDSLE 188 (543)
Q Consensus 179 L~l~~~~~~~ 188 (543)
++..++.+..
T Consensus 116 ~e~k~~~~~~ 125 (326)
T KOG0473|consen 116 NEQKKTEFFR 125 (326)
T ss_pred hhhccCcchH
Confidence 8888877433
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.12 Score=28.49 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=11.5
Q ss_pred ccccEEecCCCCccccchh
Q 044382 127 RYLRYLNLSGTVIRTLPES 145 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~ 145 (543)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.12 Score=28.49 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=11.5
Q ss_pred ccccEEecCCCCccccchh
Q 044382 127 RYLRYLNLSGTVIRTLPES 145 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~ 145 (543)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.27 Score=27.11 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=14.6
Q ss_pred CCccceEeeccCCCCcccc
Q 044382 512 ICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 512 l~~L~~L~l~~c~~l~~~~ 530 (543)
+++|++|++++|++++...
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 3688888899998887643
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.32 Score=26.78 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=17.1
Q ss_pred CCeeeEEEecCCCccccCcc
Q 044382 103 LQRLRVFSLRGYHIYELPDS 122 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~lp~~ 122 (543)
+.+|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46789999999999999865
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.32 Score=26.78 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=17.1
Q ss_pred CCeeeEEEecCCCccccCcc
Q 044382 103 LQRLRVFSLRGYHIYELPDS 122 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~lp~~ 122 (543)
+.+|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46789999999999999865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 6e-21
Identities = 30/110 (27%), Positives = 47/110 (42%)
Query: 94 CSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153
+ L L+ L I LP SI +L+ L+ L + + + L +++ L L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL 203
L L GC L+ G L L + +L +PL I +LT L+ L
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 6e-19
Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 49/307 (15%)
Query: 49 NLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNG-----FLSGYLACSILPKLF-- 101
+ + + Y D +++ Y+ R R +N A L
Sbjct: 18 YFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLED 77
Query: 102 -KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGC 160
LR + + PD L +L+++ + + LP+++ + L TL L
Sbjct: 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN 137
Query: 161 RRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELK 220
L+ L A + +L +L L+ L E+P + L
Sbjct: 138 -PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG-------------LV 183
Query: 221 SLIHLQGTLKISKLENI-KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDV 279
+L L+ L+ + + ++ I + +NLK L + L
Sbjct: 184 NLQSLR--LEWTGIRSLPASIANL--------QNLKSLKIRN-SPLSALGPA-------- 224
Query: 280 LDMLKPHKNLEQFGICGYGG-TKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSL 337
+ L LE+ + G +P G + L L +DC LP + +L L
Sbjct: 225 IHHL---PKLEELDLRGCTALRNYPPIFGGRA--PLKRLILKDCSNLLTLPLDIHRLTQL 279
Query: 338 KHLTVRG 344
+ L +RG
Sbjct: 280 EKLDLRG 286
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 54/271 (19%), Positives = 85/271 (31%), Gaps = 65/271 (23%)
Query: 97 LPK-LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTL 155
P F+L L+ ++ + ELPD++ L L L+ +R LP S+ L L L
Sbjct: 96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 156 LLEGCRRLKKLCADMGN---------LIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL--- 203
+ C L +L + + L+ L L T + +P I L L++L
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIR 214
Query: 204 -CNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI-KDIGDAKEARLDGKKNLKELSLNW 261
+ L +L+ L L+G + L N G LK L L
Sbjct: 215 NSPLSALGPAIHHLPKLEEL-DLRGC---TALRNYPPIFGGR--------APLKRLILKD 262
Query: 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFED 321
NL P + + L L
Sbjct: 263 ------------------------CSNL----------LTLPLDIHRLT--QLEKLDLRG 286
Query: 322 CGMCTALP-SVGQLPSLKHLTVRGMSRVNRL 351
C + LP + QLP+ + V +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 3e-16
Identities = 62/363 (17%), Positives = 104/363 (28%), Gaps = 106/363 (29%)
Query: 94 CSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRY--LRYLNLSGTVIRTLPESVNKLYN 151
+ ++ + G + D + D L L + P+ +L +
Sbjct: 46 WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH 105
Query: 152 LHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKD 211
L + ++ L +L M L L + L +P I L L+ L
Sbjct: 106 LQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLREL-------- 155
Query: 212 SGSGLRELKSLIHLQGTLKISKL-ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSS 270
++ ++++L E + + E G NL+ L L WT
Sbjct: 156 ------------SIRACPELTELPEPLASTDASGE--HQGLVNLQSLRLEWT-------- 193
Query: 271 TEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPS 330
+ P + + NL +LK + + P+
Sbjct: 194 -----------------GI----------RSLPASIANLQ--NLKSLKIRNSPLSALGPA 224
Query: 331 VGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGV 390
+ LP L+ L +RG + L
Sbjct: 225 IHHLPKLEELDLRGCTA-------------------LRNY----------------PPIF 249
Query: 391 ERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELS---ISIASLPALCKMEI 444
L+ L + CS L T P L LE L + C LS IA LPA C + +
Sbjct: 250 GGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308
Query: 445 GGC 447
Sbjct: 309 PPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 51/323 (15%), Positives = 84/323 (26%), Gaps = 74/323 (22%)
Query: 141 TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200
+ + L +G L+ + + ++ + + S
Sbjct: 3 SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNP 58
Query: 201 QTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260
Q +G L+ + DA + L L
Sbjct: 59 QIETR------TGRALKAT-----------------ADLLEDATQ------PGRVALELR 89
Query: 261 WTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFE 320
L D +L+ I G + P + F L TL
Sbjct: 90 SV----PLPQ--------FPDQAFRLSHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLA 135
Query: 321 DCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWE 379
+ ALP S+ L L+ L++R + L D+ L L+ L
Sbjct: 136 RNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL---- 190
Query: 380 EWIPHGSSQGVERFP-------KLRELHILRCSKLQGTFPE---HLPALEMLVIVECNEL 429
G+ P L+ L +R S L HLP LE L + C L
Sbjct: 191 ------EWTGIRSLPASIANLQNLKSLK-IRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242
Query: 430 SI---SIASLPALCKMEIGGCKK 449
L ++ + C
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSN 265
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 11/151 (7%)
Query: 83 LSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTL 142
+ + S SI + +I + ++ L LR + +
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE 221
Query: 143 PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQT 202
E ++ K NL L + N +L ++P + L +Q
Sbjct: 222 NICE----AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277
Query: 203 L----CNFVVG---KDSGSGLRELKSLIHLQ 226
+ + G KD L + +Q
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQ 308
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 19/163 (11%), Positives = 50/163 (30%), Gaps = 19/163 (11%)
Query: 52 HLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLS-NGFLSGYLACSILPKLFKLQRLRVFS 110
+ D + D + ++ + N + + L K+++L +
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQII---YIGYNNLKTF----PVETSLQKMKKLGMLE 336
Query: 111 LRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRRLKKL--C 167
+ + G L LNL+ I +P + + L +LK +
Sbjct: 337 CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNI 395
Query: 168 ADMGNLIKLHHLNDSN-------TDSLEEMPLGIGKLTCLQTL 203
D ++ + ++ S + + + K + ++
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 20/162 (12%)
Query: 78 FLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHI-YELPDSIGDLRYLRYLNLSG 136
+ ++ + + + +L +LR F + E + Y
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239
Query: 137 TVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN---------DSNTDSL 187
T + L +L + + C L KL + L ++ +N + D
Sbjct: 240 ----TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295
Query: 188 EEMPLGIGKLTCLQTL----CNFVVGKDSGSGLRELKSLIHL 225
+ +Q + N S L+++K L L
Sbjct: 296 QA-LADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGML 335
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 17/122 (13%), Positives = 31/122 (25%), Gaps = 14/122 (11%)
Query: 95 SILPKLFKLQRLRVF-----SLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPES--VN 147
+ L + + + + + ++ + L ++L + L +
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510
Query: 148 KLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSL------EEMPLGIGKLTCLQ 201
L L + L K N L N E P GI L
Sbjct: 511 TLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569
Query: 202 TL 203
L
Sbjct: 570 QL 571
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 44/352 (12%), Positives = 97/352 (27%), Gaps = 65/352 (18%)
Query: 102 KLQRLRVFSLRGYHIY-ELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGC 160
R+ SL G+ +PD+IG L L L L +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS----------HGEK---------V 119
Query: 161 RRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELK 220
+ + + + + + + +++
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179
Query: 221 --SLIHLQGTLKISKLENI-KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEK 277
+L Q + + + K + L++ + + E E
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRL--------TKLRQFYMGNSPFVAENICEAWENEN 231
Query: 278 DVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPS 336
+ + +K + +L ++ +C T LP + LP
Sbjct: 232 --SEYAQQYKTE-------------DLKWD--NLKDLTDVEVYNCPNLTKLPTFLKALPE 274
Query: 337 LKHLTVRGMSRVNRLGSKFYGDDS---PIPFPCLETLRFEDLQEWEEWIPHGSSQGVERF 393
++ + V NR S D P E ++ + + +
Sbjct: 275 MQLINVAC----NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LKTFPVETS--L 326
Query: 394 PKLRELHILRCS--KLQGTFPE--HLPALEMLVIVECNELSISIASLPALCK 441
K+++L +L C +L+G P L L + N+++ A+ +
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL-AYNQITEIPANFCGFTE 377
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 12/144 (8%), Positives = 35/144 (24%), Gaps = 5/144 (3%)
Query: 83 LSNGFLSGYLACSILPKLFKLQRLRVFSL-RGYHIYELPDSIGDLRY--LRYLNLSG-TV 138
L + + R ++ D + L ++
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171
Query: 139 IRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLT 198
+++ +S + + + + L KL N+ + E +
Sbjct: 172 QKSIKKSSRITLKDTQIGQLS-NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230
Query: 199 CLQTLCNFVVGKDSGSGLRELKSL 222
+ + L++L +
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDV 254
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 24/136 (17%)
Query: 52 HLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSL 111
L+ + + F L + + LS S + L+ F +
Sbjct: 499 KLTKLSDDFRATT----LPYLVGID------LSYNSFSK-----FPTQPLNSSTLKGFGI 543
Query: 112 RGYHIY-------ELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLK 164
R E P+ I L L + IR + E + N+ L ++ +
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNIS 601
Query: 165 KLCADMGNLIKLHHLN 180
+ + I+
Sbjct: 602 IDLSYVCPYIEAGMYM 617
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 3e-10
Identities = 91/624 (14%), Positives = 166/624 (26%), Gaps = 186/624 (29%)
Query: 2 EVQKSSNDASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSF------PKNLRHLSY 55
E Q D + + D + + ++ +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNF------DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 56 IPEYFD--------GGKRF-EDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRL 106
+ F ++F E++ I + FL + S++ +++ QR
Sbjct: 67 L---FWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTE----QRQPSMMTRMYIEQRD 117
Query: 107 RVFS----LRGYHIYELPDSIGDLR-YLRYLNLSGTVIRTLPESVNKLYNLH-------- 153
R+++ Y++ LR L L + V+ +
Sbjct: 118 RLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVL------------IDGVLGSGKT 164
Query: 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG 213
+ L+ C K C M I LN N +S E + + KL Q N+ D
Sbjct: 165 WVALDVCLSYKVQCK-MDFKI--FWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHS 220
Query: 214 SGLR--------ELKSLIHLQG---TLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262
S ++ EL+ L+ + L + L N+++ K + N +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQN-----------AKAWN--AFNLS 265
Query: 263 CST----------DGLSS--TEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSS 310
C D LS+ T + L P + +L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----------KYLDCRP 315
Query: 311 FLNLVTLKFEDC-------GMCTALPSVG--------QLPSLKHLTVRGMSRVNRLGS-- 353
L E + G + K T+ S +N L
Sbjct: 316 Q----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAE 370
Query: 354 --KFYGD------DSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELH---IL 402
K + + IP L + W + V + +LH ++
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLI-------WFD----VIKSDVMVV--VNKLHKYSLV 417
Query: 403 RCSKLQGTFPEHLPALEMLVIVECNEL-----SISIASLPALCKMEIGGCKKVVWRSATD 457
+ T +P++ + + V+ SI + + D
Sbjct: 418 EKQPKESTI--SIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYL----D 470
Query: 458 ---------HLGSQNSVVCRDTSNQVFLSGPLKPRIPKLE--ELKINNIQNETCIWKSHN 506
HL + VFL E KI + S
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLD---------FRFLEQKIRHDSTAWNASGSIL 521
Query: 507 ELLQDICSLKRLLITSCPKLQSLV 530
LQ + K + + PK + LV
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLV 545
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 48/321 (14%), Positives = 86/321 (26%), Gaps = 104/321 (32%)
Query: 32 FTMEYTSEV------NKQQSFPK-----NLRHLSYIPEYF-DGGKRFE--DLYDIQHLRT 77
T + + + Q P+ N R LS I E DG ++ + L T
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 78 FLPVRL----SNGFLSGYLACSILPK--------LFKL-------------QRLRVFSL- 111
+ L + + S+ P L + +L +SL
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 112 ---RGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCA 168
+P YL + Y LH +++ K +
Sbjct: 418 EKQPKESTISIPS-----IYLELK-----------VKLENEYALHRSIVDHYNIPKTFDS 461
Query: 169 DMGNLIKL-----------HHL-NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGK--DSGS 214
D +LI HHL N + + + + F+ K +
Sbjct: 462 D--DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR----MV--FLDF-RFLEQKIRHDST 512
Query: 215 GLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDG-KKNLKELSLNWTCSTDGLSSTEA 273
S+++ LK K I D E ++ L ++ N CS
Sbjct: 513 AWNASGSILNTLQQLKFYK-PYICDNDPKYERLVNAILDFLPKIEENLICS--------- 562
Query: 274 ETEKDVLDMLKPHKNLEQFGI 294
+ +L + +
Sbjct: 563 -----------KYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 6e-04
Identities = 45/298 (15%), Positives = 86/298 (28%), Gaps = 93/298 (31%)
Query: 277 KDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCG---MCTALPSVGQ 333
+ L L+P KN+ G+ G G K TW+ L+ D + ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSG--K--TWVALDVCLSYKVQCKMDFKIFWL-----NLKN 191
Query: 334 LPSLKHLTVRGMSRVNRLGSKFYGDDSPIP-FPCLETLRFEDLQEWEEWIPHGSSQGVER 392
S + + + + +L + + + LR +Q + R
Sbjct: 192 CNSPETV----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-----------LRR 236
Query: 393 FPKLRE----LHILR--CSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGG 446
K + L +L + + A
Sbjct: 237 LLKSKPYENCLLVLLNVQN------AKAWNAFN-------------------------LS 265
Query: 447 CKKVV---WRSATDHLGSQN-SVVCRDTSNQVF--------LSGPLKPRIPKL--EELKI 492
CK ++ ++ TD L + + + D + L L R L E L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 493 N---------NIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEEEKDQQQQL 541
N +I++ W + + D L ++ +S L L E + +L
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESS---LNVLEPAEYRKMFDRL 378
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 12/184 (6%)
Query: 83 LSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTL 142
L + I + I + +I L L+ + + +
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463
Query: 143 PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQT 202
+V + + ++ + NL L + N ++ ++P + L LQ+
Sbjct: 464 NIAV----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519
Query: 203 LC----NFVVGKDSGSGLRELKSLIHLQGTLKISKLE--NIKDIGDAKEARLDGKKNLKE 256
L + + L ++I + N+++ A L L
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA--SASLQKMVKLGL 577
Query: 257 LSLN 260
L
Sbjct: 578 LDCV 581
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Query: 93 ACSILPKLF-KLQRLRVFSLRGYHIYELPDSI--GDLRYLRYLNLSGTVIRTLPESVNKL 149
+ + L LR + L D L YL +++S + P
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775
Query: 150 YNL------HTLLLEGCRRLKKLCADMGNLIKLHHLN-DSNTDSLEEMPLGIGKLTCLQT 202
L H EG R L++ + L L SN + ++ + L
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN--DIRKVDEKL--TPQLYI 831
Query: 203 L 203
L
Sbjct: 832 L 832
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 29/172 (16%)
Query: 41 NKQQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPK- 99
N+ S + + + + D G + + Y + L P
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFY------------MGYNNLEE------FPAS 566
Query: 100 --LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLL 156
L K+ +L + + L + G L L L I +PE + L
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625
Query: 157 LEGCRRLKKL--CADMGNLIKLHHLN-DSNTDSLEEMPLGIGKLTCLQTLCN 205
+LK + + ++ + ++ N + I N
Sbjct: 626 FSHN-KLKYIPNIFNAKSVYVMGSVDFSYN--KIGSEGRNISCSMDDYKGIN 674
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 9e-05
Identities = 48/335 (14%), Positives = 92/335 (27%), Gaps = 76/335 (22%)
Query: 103 LQRLRVFSLRGYHIY-ELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCR 161
R+ SL G+ +PD+IG L L+ L+
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE------------ 369
Query: 162 RLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKS 221
L + + + + L + ++ +K
Sbjct: 370 ----------ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419
Query: 222 LIHLQ-GTLKISKLEN-IKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDV 279
+ +I L N I I A + L+ + + + + +
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYF----ANSPFTYDNIAVDWED 471
Query: 280 LDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLK 338
+ + + +L ++ +C T LP + LP L+
Sbjct: 472 ANSDYAKQY-----------ENEELSWSNLK--DLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 339 HLTVRGMSRVNRLGS--KFYGDDSPIP-----FPCLETLRFED--LQEWEEWIPHGSSQG 389
L + NR S + D + + P ++ L+E P +S
Sbjct: 519 SLNIAC----NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE----FPASAS-- 568
Query: 390 VERFPKLRELHILRCS--KLQGTFPEHLPALEMLV 422
K+ +L +L C K+ HL A V
Sbjct: 569 ---LQKMVKLGLLDCVHNKV-----RHLEAFGTNV 595
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 8e-09
Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 11/169 (6%)
Query: 95 SILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHT 154
+ +L+ L + + + +++L + + +++ NL
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 155 LLLEG----CRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 210
L G C L+ + + + E + L C +
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 211 DSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259
L LK H + + S+ E + E + + +E+
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERL-------ECERENQARQREIDA 343
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 4/132 (3%)
Query: 95 SILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHT 154
+ +L+ L + + + +++L + + +++ NL
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 155 LLLEG----CRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 210
L G C L+ + + + E + L C +
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 211 DSGSGLRELKSL 222
L L
Sbjct: 302 PFADRLIALGHH 313
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 100 LFKLQRLRVFSLRGYHIYELP--DSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLL 157
R++ L+ I + + L +LNL I + V L TL L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDL 198
Query: 158 EGCRRLKKLCADMGNLIKLHHLN-DSNTDSLEEMPLGIGKLTCLQTL 203
+L + + + + ++ +N L + + L+
Sbjct: 199 SSN-KLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHF 242
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 8/105 (7%)
Query: 103 LQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHTLLLEG 159
Q + L I L D G ++YL+L I T+ E L L L+
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 160 CRRLKKLCADMGNLIKLHHLN-DSNTDSLEEMPLGIGKLTCLQTL 203
+ + + KL L+ SN L M + +
Sbjct: 179 N-FIYDVKGQV-VFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWI 219
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 29/118 (24%), Positives = 39/118 (33%), Gaps = 21/118 (17%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLY------ 150
LP L LR + G + LP L L + T + LP + KL+
Sbjct: 76 LPALPP--ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133
Query: 151 --------NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200
L L + +L L A L KL N N L +P+ L L
Sbjct: 134 TSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYN--N--QLTSLPMLPSGLQEL 186
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 21/121 (17%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLY------ 150
LP L L+ S+ + LP +L L N T + LP + +L
Sbjct: 176 LPML--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL 233
Query: 151 --------NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQT 202
L L++ G RL L L+ L + + L +P + L+ T
Sbjct: 234 TSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSL-SVYRNQ---LTRLPESLIHLSSETT 288
Query: 203 L 203
+
Sbjct: 289 V 289
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 23/119 (19%)
Query: 103 LQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCR- 161
+ + ++ LP + LR L +SG + +LP L L
Sbjct: 60 PAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL 116
Query: 162 ---------------RLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205
+L L L +L + + L +P +L L N
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD----NQLASLPALPSELCKLWAYNN 171
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 6/138 (4%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
LP L L S+ + LP+S+ L +NL G + + + +
Sbjct: 256 LPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EITSAP 311
Query: 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGL 216
++ A + L+ + D L +P G+ F ++ +
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGEPAPADRWHMFGQEDNADAFS 369
Query: 217 RELKSLIHLQGTLKISKL 234
L L + +K +
Sbjct: 370 LFLDRLSETENFIKDAGF 387
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 59/340 (17%), Positives = 109/340 (32%), Gaps = 53/340 (15%)
Query: 95 SILPKLFK-LQRLRVFSLRGYHIYELPDSI-GDLRYLRYLNLSGTVIRTLPESV-NKLYN 151
I + L+V L+ I + L L +L+LS + +L S L +
Sbjct: 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99
Query: 152 LHTLLLEGCRRLKKL--CADMGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQTL---CN 205
L L L G + L + NL L L N ++ E+ LT L L
Sbjct: 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158
Query: 206 FVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCST 265
+ S S L+ ++ + HL TL +S+ + +I D +++ L L
Sbjct: 159 SLRNYQSQS-LKSIRDIHHL--TLHLSESAFLLEIF------ADILSSVRYLELR----- 204
Query: 266 DGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMC 325
NL +F + + + +F V +
Sbjct: 205 --------------------DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 326 TALPSVGQLPSLK--HLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIP 383
L + +L ++ T+ G+ N S + + + L +
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY--DL 302
Query: 384 HGSSQGVERFPKLRELHILRC--SKLQGTFPEHLPALEML 421
K++ + + + +F +HL +LE L
Sbjct: 303 STVYSL---LEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 103 LQRLRVFSLRGYHIYELPDSIG---DLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEG 159
L+ L H+ + + L+ L L++S +P+S + L L
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419
Query: 160 CRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLREL 219
++ + L L+ SN +L+ L + +L L N + S L
Sbjct: 420 T-GIRVV--KTCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYISRNKLKTLPDASLFPVL 475
Query: 220 KSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL---NWTCS 264
+ + ++ + + D +L+++ L W CS
Sbjct: 476 LVM-KISR-NQLKSVP---------DGIFDRLTSLQKIWLHTNPWDCS 512
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 35/205 (17%), Positives = 64/205 (31%), Gaps = 44/205 (21%)
Query: 40 VNKQQSFPKNLRH--LSYIP-EYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSG--YLAC 94
+N S +N + +S +YF ++E R L ++ L
Sbjct: 7 INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66
Query: 95 S-----ILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYL-----------------RYL 132
+ LP ++ V + + LP+ L YL ++L
Sbjct: 67 NRLNLSSLPDNL-PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHL 125
Query: 133 NLSGTVIRTLPESVNKLYNLH------TLLLEGCRRLKKLCADMGNLI--------KLHH 178
++ + LPE L ++ T+L E L+ L N + L
Sbjct: 126 DVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVR-NNQLTFLPELPESLEA 184
Query: 179 LNDSNTDSLEEMPLGIGKLTCLQTL 203
L+ S LE +P + +
Sbjct: 185 LDVSTNL-LESLPAVPVRNHHSEET 208
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
LP+L L V S+R + LP+ L L ++S ++ +LP + ++
Sbjct: 155 LPEL--PTSLEVLSVRNNQLTFLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETE 209
Query: 157 LE-GCR--RLKKLCADMGNLIKLHHLN 180
+ CR R+ + ++ +L +
Sbjct: 210 IFFRCRENRITHIPENILSLDPTCTII 236
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 62/353 (17%), Positives = 107/353 (30%), Gaps = 53/353 (15%)
Query: 95 SILPKLFK-LQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPESV-NKLYN 151
+ F L+V L I + + L +L L L+G I++L + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 152 LHTLLLEGCRRLKKLCADM-GNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 210
L L+ L L G+L L LN + + + F
Sbjct: 102 LQKLVAVET-NLASLENFPIGHLKTLKELN-----------VAHNLIQSFKLPEYF---- 145
Query: 211 DSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSS 270
S L L+ L L KI + L + L+L+ S + ++
Sbjct: 146 ---SNLTNLEHL-DLSSN-KIQSIY---------CTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 271 TEAETEKDV-LDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP 329
+ K++ L L N + + L LV +F + G
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNV----MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 330 SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQG 389
L L +LT+ R+ L +Y DD F CL + L + +
Sbjct: 248 K-SALEGLCNLTIEEF-RLAYL--DYYLDDIIDLFNCLTNVSSFSLV-------SVTIER 296
Query: 390 VERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKM 442
V+ F L + P L++ + S + + +
Sbjct: 297 VKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 25/189 (13%)
Query: 82 RLSNGFLSGYLACSILPKLFK-LQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIR 140
L + +I F L+ L H+ ELP + L L+ L LS
Sbjct: 260 NLQKHYFF-----NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314
Query: 141 TLPESV-NKLYNLHTLLLEGCRRLKKLCADM-GNLIKLHHLNDSNTD--SLEEMPLGIGK 196
L + + +L L ++G + +L NL L L+ S+ D + + L +
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
Query: 197 LTCLQTL---CNFVVGKDSG--SGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGK 251
L+ LQ+L N + + +L+ L L T ++ + ++
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELL-DLAFT-RLKVKDA--------QSPFQNL 424
Query: 252 KNLKELSLN 260
LK L+L+
Sbjct: 425 HLLKVLNLS 433
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 95 SILPKLFK-LQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLPESV-NKLYN 151
+I F L L L IY + D+ L L L+ + + E+ +
Sbjct: 47 TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106
Query: 152 LHTLLLEGCRRLKKLCADM-GNLIKLHHLN-DSNTDSLEEMPLG-IGKLTCLQTL 203
L L + + N L L SN + + L L+ L
Sbjct: 107 LKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN--HISSIKLPKGFPTEKLKVL 158
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-07
Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 9/203 (4%)
Query: 95 SILPKLFK-LQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153
I+ F +QRL + + L + L+ L+LS + + + + L
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327
Query: 154 TLLLEGCRRLKKLCADMGNLIKLHHL----NDSNTDSLEEMPLGIGKLTCLQTLCNFVVG 209
L L+ + L + L +L ND + +SL + + + + +
Sbjct: 328 NLYLDHN-SIVTL--KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384
Query: 210 KDSGSGLRELKSLIHLQGT-LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGL 268
GL +S L+ L ++ + + R + + T
Sbjct: 385 YQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQG 444
Query: 269 SSTEAETEKDVLDMLKPHKNLEQ 291
E+ ++ + ++Q
Sbjct: 445 GVPLQGNEQLEAEVNELRAEVQQ 467
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 20/158 (12%)
Query: 52 HLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-LQRLRVFS 110
H+ + G L + + + N + + L +++ + +
Sbjct: 33 HIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMR-----KLPAALLDSFRQVELLN 81
Query: 111 LRGYHIYELPDSI-GDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRRLKKLCA 168
L I E+ ++ L + IR LP V + L L+LE L L
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR 140
Query: 169 DM-GNLIKLHHLN-DSNTDSLEEMPLGI-GKLTCLQTL 203
+ N KL L+ +N +LE + T LQ L
Sbjct: 141 GIFHNTPKLTTLSMSNN--NLERIEDDTFQATTSLQNL 176
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 5e-07
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 49 NLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRV 108
+R L + + + F L + +R L + FL + +RV
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL-----LENSVLKMEYADVRV 445
Query: 109 FSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCA 168
L + L + L + +L+LS +R LP ++ L L L L+ +
Sbjct: 446 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENV-D 502
Query: 169 DMGNLIKLHHLNDSNT--DSLEEMPLGIGKLTCLQTL 203
+ NL +L L N + + L L
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLL 538
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 9e-07
Identities = 29/169 (17%), Positives = 69/169 (40%), Gaps = 21/169 (12%)
Query: 95 SILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHT 154
S + L L ++ +L H + ++ L YL ++ + ++ + + L +L++
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181
Query: 155 LLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL---CNFVVGKD 211
L L +++ + + +L LH+ + ++ + +T L +L N +
Sbjct: 182 LSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNKITDLS 237
Query: 212 SGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260
+ L +L L + +IS + +KD+ LK L++
Sbjct: 238 PLANLSQLTWL-EIGTN-QISDINAVKDL-----------TKLKMLNVG 273
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 52/316 (16%), Positives = 105/316 (33%), Gaps = 52/316 (16%)
Query: 63 GKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS 122
G++ + I++L + L+ ++ + L L +L + I ++ +
Sbjct: 53 GEKVASIQGIEYLTNLEYLNLNGNQITD------ISPLSNLVKLTNLYIGTNKITDIS-A 105
Query: 123 IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182
+ +L LR L L+ I + + L +++L L L L + + N+ L++L +
Sbjct: 106 LQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVT 163
Query: 183 NTDSLEEMPLGIGKLTCLQTL---CNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKD 239
+ ++++ I LT L +L N + + L L +I+ + + +
Sbjct: 164 ES-KVKDVT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYF-TAYVN-QITDITPVAN 219
Query: 240 IGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGG 299
+ L L + TD L L L I
Sbjct: 220 M-----------TRLNSLKIGNNKITD-------------LSPLANLSQLTWLEIGTNQI 255
Query: 300 TKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD 359
+ L L + + + + L L L + N+LG++ D
Sbjct: 256 SDINAV---KDLTKLKMLNVGSNQI-SDISVLNNLSQLNSLFLNN----NQLGNE---DM 304
Query: 360 SPI-PFPCLETLRFED 374
I L TL
Sbjct: 305 EVIGGLTNLTTLFLSQ 320
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 21/167 (12%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
+ L L+ + ++ + +L + L ++G + ++ + L NL L
Sbjct: 15 IFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLN 72
Query: 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC---NFVVGKDSG 213
L G ++ + + + NL+KL +L + ++ + LT L+ L + +
Sbjct: 73 LNGN-QITDI-SPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISPL 128
Query: 214 SGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260
+ L ++ SL +L +S L + ++ L L++
Sbjct: 129 ANLTKMYSL-NLGANHNLSDLSPLSNM-----------TGLNYLTVT 163
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 22/192 (11%)
Query: 41 NKQQSFPKNLRHLSYIPEYFDGGKRFEDLY----------DIQHLRTFLPVRLSNGFLSG 90
+ P ++ EY++ +E + LR L + L+
Sbjct: 21 SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80
Query: 91 YLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLY 150
S+ L+ L + ELP+ L+ L N + + LP
Sbjct: 81 LGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP------ 131
Query: 151 NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 210
L L + +L+KL ++ N L ++ N SL+++P L + N +
Sbjct: 132 LLEYLGVSNN-QLEKL-PELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEEL 188
Query: 211 DSGSGLRELKSL 222
L L ++
Sbjct: 189 PELQNLPFLTAI 200
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 59/363 (16%), Positives = 110/363 (30%), Gaps = 102/363 (28%)
Query: 96 ILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVI-RTLPESVNKLYNLHT 154
I P+ L+ ++ E+P +++ + + R P + +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 155 LLLEGCR------------RLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQT 202
L C L L +L L + ++ L E+P L L
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLV-ASCNS---LTELPELPQSLKSLLV 118
Query: 203 LCNFVVGKDSGSGLRELKSLIHLQGTLKIS--KLENIKDIGDAKEARLDGKKNLKELSLN 260
N L+ L L L L +S +LE + ++ ++ LK + ++
Sbjct: 119 DNN---------NLKALSDLPPLLEYLGVSNNQLEKLPELQNSS--------FLKIIDVD 161
Query: 261 WTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFE 320
+ +L K P +L +
Sbjct: 162 -------------------------NNSL----------KKLPDLPP-----SLEFIAAG 181
Query: 321 DCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFED--LQEW 378
+ + LP + LP L + N L P LE++ + L+E
Sbjct: 182 NNQL-EELPELQNLPFLTAIYADN----NSLKK------LPDLPLSLESIVAGNNILEEL 230
Query: 379 EEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVEC--NELSISIASL 436
E ++ P L ++ + L+ T P+ P+LE L + + +L SL
Sbjct: 231 PE---------LQNLPFLTTIY-ADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSL 279
Query: 437 PAL 439
L
Sbjct: 280 TFL 282
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 19/125 (15%)
Query: 95 SILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLY---- 150
LP+L L L + LPD L L + T + LP+S+ L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287
Query: 151 ----------NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200
NL+ L ++ LC +L +L +++++ L E+P +L L
Sbjct: 288 IFSGLSELPPNLYYLNASSN-EIRSLCDLPPSLEEL-NVSNNK---LIELPALPPRLERL 342
Query: 201 QTLCN 205
N
Sbjct: 343 IASFN 347
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
LP L RL H+ E+P+ +L+ L ++ +R P+ + +L
Sbjct: 332 LPAL--PPRLERLIASFNHLAEVPELPQNLKQL---HVEYNPLREFPDIPESVEDLRMNS 386
Query: 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205
L ++ NL +LH + + L E P + L+
Sbjct: 387 -----HLAEVPELPQNLKQLH-VETNP---LREFPDIPESVEDLRMNSE 426
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 70/387 (18%), Positives = 121/387 (31%), Gaps = 58/387 (14%)
Query: 66 FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-LQRLRVFSLRGYHI--YELPDS 122
F L +Q L L+ + L+ L+ ++ I ++LP+
Sbjct: 96 FSGLSSLQKLV------AVETNLAS-----LENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 123 IGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLE---GCRRLKKLCADMGNLIKLHH 178
+L L +L+LS I+++ + L+ + L L + + I+LH
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204
Query: 179 LN-DSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQG----TLKISK 233
L +N DSL M I L L+ V+G+ G E L+G T++ +
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVH-RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 234 LENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFG 293
L + D + N+ SL + + + + L+++ + QF
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLV-SVTIERVKDFSYNFGWQHLELV--NCKFGQF- 319
Query: 294 ICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGS 353
+L L F S LPSL+ L + N L
Sbjct: 320 -------------PTLKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSR----NGLSF 361
Query: 354 KFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE 413
K S L+ L S +L L + S L+
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNG------VITMSSNFLGLEQLEHLD-FQHSNLKQMSEF 414
Query: 414 ----HLPALEMLVIVECNELSISIASL 436
L L L I ++ +
Sbjct: 415 SVFLSLRNLIYLDI-SHTHTRVAFNGI 440
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 72/368 (19%), Positives = 113/368 (30%), Gaps = 64/368 (17%)
Query: 83 LSNGFLSGYLACSILPKLFK-LQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIR 140
LS L + F L+V L I + + L +L L L+G I+
Sbjct: 35 LSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 141 TLPESV-NKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHHLN-DSNTDSLEEMPLGIGKL 197
+L + L +L L+ L L +G+L L LN N ++P L
Sbjct: 90 SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 198 TCLQTLC---NFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNL 254
T L+ L N + LR L + L +L +S + I + + L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLN-PMNFI----QPGAFKEIRL 202
Query: 255 KELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNL 314
+L+L N + + L L
Sbjct: 203 HKLTLR--------------------------NNFDSLNV----MKTCIQGLAGLEVHRL 232
Query: 315 VTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFED 374
V +F + G L L +LT + +Y DD F CL +
Sbjct: 233 VLGEFRNEGNLEKFDK-SALEGLCNLT---IEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 375 LQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQ-GTFPE-HLPALEMLVIVECNELSI- 431
L + + V+ F L + G FP L +L+ L +
Sbjct: 289 LV-------SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341
Query: 432 SIASLPAL 439
S LP+L
Sbjct: 342 SEVDLPSL 349
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
+L + I + I L + L L+G + + + + L NL L
Sbjct: 36 AVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLF 93
Query: 157 LEGCRRLKKLCADMGNLIKLHHLN-DSNTDSLEEMPLGIGKLTCLQTLC---NFVVGKDS 212
L+ ++K L + + +L KL L+ + N + ++ G+ L L++L N +
Sbjct: 94 LDEN-KIKDLSS-LKDLKKLKSLSLEHN--GISDIN-GLVHLPQLESLYLGNNKITDITV 148
Query: 213 GSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTE 272
S L +L +L L+ +IS + + + L+ L L+ +D
Sbjct: 149 LSRLTKLDTL-SLEDN-QISDIVPLAGL-----------TKLQNLYLSKNHISD------ 189
Query: 273 AETEKDVLDMLKPHKNLE 290
L L KNL+
Sbjct: 190 -------LRALAGLKNLD 200
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 83 LSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIGDLRYLRYLNLSGTVIR- 140
LS +LSG +I L L +LR L + E+P + ++ L L L +
Sbjct: 425 LSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 141 TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN-DSNTDSLE-EMPLGIGKLT 198
+P ++ NL+ + L R ++ +G L L L +N S +P +G
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN--SFSGNIPAELGDCR 538
Query: 199 CLQTL 203
L L
Sbjct: 539 SLIWL 543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 23/154 (14%)
Query: 83 LSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIGDLRYLRYLNLSGTVIR- 140
+S+ S +P L L+ + G + + +I L+ LN+S
Sbjct: 207 VSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 141 TLPESVNKLYNLHTLLLEGCRRLKKLCAD-----MGNLIKLHHLNDSNTDSLE-EMPLGI 194
+P L +L L L K + G L L+ S +P
Sbjct: 262 PIPPL--PLKSLQYLSLAEN----KFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFF 314
Query: 195 GKLTCLQTLC---NFVVGKDSGSGLRELKSLIHL 225
G + L++L N G+ L +++ L L
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 81 VRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIGDLRYLRYL-----NL 134
+ LSN L+G I + +L+ L + L +P +GD R L +L
Sbjct: 495 ISLSNNRLTG----EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 135 SGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN-DSNTDSLE-EMPL 192
+G T+P ++ K + + K + N + N +
Sbjct: 551 NG----TIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602
Query: 193 GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQG 227
+ +L+ N G + +
Sbjct: 603 QLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMF 636
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 95 SILPKLFK-LQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153
I+ F +QRL + + L + L+ L+LS + + + + L
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321
Query: 154 TLLLEGCRRLKKLCADMGNLIKLHHL----NDSNTDSLEEMPLGIGKLT 198
L L+ + L + L +L ND + +SL + + +
Sbjct: 322 NLYLDHN-SIVTL--KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 20/158 (12%)
Query: 52 HLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-LQRLRVFS 110
H+ + G L + + + N + + L +++ + +
Sbjct: 27 HIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMR-----KLPAALLDSFRQVELLN 75
Query: 111 LRGYHIYELPDSI-GDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRRLKKLCA 168
L I E+ ++ L + IR LP V + L L+LE L L
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR 134
Query: 169 DM-GNLIKLHHLN-DSNTDSLEEMPLGI-GKLTCLQTL 203
+ N KL L+ +N +LE + T LQ L
Sbjct: 135 GIFHNTPKLTTLSMSNN--NLERIEDDTFQATTSLQNL 170
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 14/178 (7%)
Query: 95 SILPKLFK-LQRLRVFSLRGYHIYE--LPDSIGDLRYLRYLNLSGTVIRTLPESV----- 146
S+ L L+ ++ I+ LP +L L +++LS I+T+ +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 147 NKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN-DSNTDSLEEMPLGIGKLTCLQTLCN 205
+L + + + IKLH L N +S M + L L
Sbjct: 178 ENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH-R 235
Query: 206 FVVGKDSGSGLRELKSLIHLQGTLKISKLE---NIKDIGDAKEARLDGKKNLKELSLN 260
++G+ E+ ++G ++ E + + N+ +SL
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 37/232 (15%), Positives = 69/232 (29%), Gaps = 33/232 (14%)
Query: 41 NKQQSFP----KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSI 96
+ + FP L+ L+ + L + +L LS LS CS
Sbjct: 317 CQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD------LSRNALSFSGCCSY 370
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPE--SVNKLYNLHT 154
LR L + + L L++L+ + ++ + E + L L
Sbjct: 371 --SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428
Query: 155 LLLEGCRRLKKLCADM-GNLIKLHHLN-DSNTDSLEEMPLGIGKLTCLQTL----CNFV- 207
L + K + L L+ L N+ + T L L C
Sbjct: 429 LDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 208 VGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259
+ L L+ L ++ + L++ + + +L L
Sbjct: 488 ISWGVFDTLHRLQLL-NMSHN-NLLFLDS---------SHYNQLYSLSTLDC 528
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 27/153 (17%)
Query: 3 VQKSSND-ASRFVMHDLISDLAQWAAGDIYFTMEYTSEVNKQQSFPKNLRHLSYIPEYFD 61
+ N + R+ +HDL D ++ ++ + R+ +
Sbjct: 424 LFCDRNGKSFRYYLHDLQVDFLT---EKNCSQLQD----LHKKIITQFQRYHQP---HTL 473
Query: 62 GGKRFEDLYDIQHL----------RTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSL 111
+ + +Y L + + S ++ +L L +
Sbjct: 474 SPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKT------ELVGPAHLIHEFV 527
Query: 112 RGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPE 144
HI + D + +L+L+G ++ P
Sbjct: 528 EYRHILDEKDCAVSENFQEFLSLNGHLLGRQPF 560
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 122 SIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181
+ + L Y+ L+ + L + +N+ L + + L L L
Sbjct: 39 TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRI 95
Query: 182 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIG 241
D + + LT L L + S L ++ +L + ++ +S I DI
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLL-DISHSAHDDSILTKINTLPKVN-SIDLSYNGAITDIM 153
Query: 242 DAKEARLDGKKNLKELSLN 260
L LK L++
Sbjct: 154 P-----LKTLPELKSLNIQ 167
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 22/175 (12%)
Query: 95 SILPKLFK-LQRLRVFSLRGYHIYELPDSI-GDLRYLRYLNLSGTVIRTLPESV-NKLYN 151
+I F L L L + +P+ L L+ L L I ++P N++ +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 152 LHTLLLEGCRRLKKLCADM-GNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC---NF- 206
L L L +RL + L L +LN + +L E+P + L L L N
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGNHL 219
Query: 207 -VVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260
+ S GL L+ L + + +I +E D ++L E++L
Sbjct: 220 SAIRPGSFQGLMHLQKL-WMIQS-QIQVIE---------RNAFDNLQSLVEINLA 263
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 94 CSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGT--VIRTLPESVNKLYN 151
C + +++ L + L Y +P S+ +L YL +L + G ++ +P ++ KL
Sbjct: 43 CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102
Query: 152 LHTLLLEGCRRLKKLC----ADMGNLIKLHHLN-DSNTDSLE-EMPLGIGKLTCLQTL 203
LH L + + + + L L+ N +L +P I L L +
Sbjct: 103 LHYLYITHT----NVSGAIPDFLSQIKTLVTLDFSYN--ALSGTLPPSISSLPNLVGI 154
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 25/158 (15%)
Query: 52 HLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGY-LACSILPKLFKLQRLRVFS 110
+++ I +Y F+ LY ++ L +S + ++ P L S
Sbjct: 187 NINAIRDYS-----FKRLYRLKVLE-----------ISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 111 LRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRRLKKLCA 168
+ ++ +P ++ L YLR+LNLS I T+ S+ ++L L + L G +L +
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEP 289
Query: 169 DM-GNLIKLHHLN-DSNTDSLEEMPLGI-GKLTCLQTL 203
L L LN N L + + + L+TL
Sbjct: 290 YAFRGLNYLRVLNVSGN--QLTTLEESVFHSVGNLETL 325
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 38/247 (15%), Positives = 78/247 (31%), Gaps = 40/247 (16%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
L ++ I + + L L +N S + + + L L +L
Sbjct: 39 TVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDIL 96
Query: 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC---NFVVGKDSG 213
+ ++ + + NL L L N + ++ + LT L L N + +
Sbjct: 97 MNNN-QIADI-TPLANLTNLTGLTLFNN-QITDID-PLKNLTNLNRLELSSNTISDISAL 152
Query: 214 SGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEA 273
SGL L+ L +++ L+ + ++ L+ L ++ +D
Sbjct: 153 SGLTSLQQL-SFGN--QVTDLKPLANL-----------TTLERLDISSNKVSD------- 191
Query: 274 ETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQ 333
+ +L NLE + NL L + + ++
Sbjct: 192 ------ISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQL-KDIGTLAS 241
Query: 334 LPSLKHL 340
L +L L
Sbjct: 242 LTNLTDL 248
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 16/164 (9%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
+ + L L L+ I +L + +L + L LSG ++ + ++ L ++ TL
Sbjct: 56 IEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLD 113
Query: 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGL 216
L ++ + + L L L + + + LT LQ L +G S L
Sbjct: 114 LTST-QITDVTP-LAGLSNLQVLYLDLN-QITNIS-PLAGLTNLQYLS---IGNAQVSDL 166
Query: 217 RELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260
L +L L TLK I DI L NL E+ L
Sbjct: 167 TPLANLSKLT-TLKADD-NKISDISP-----LASLPNLIEVHLK 203
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 87/509 (17%), Positives = 164/509 (32%), Gaps = 88/509 (17%)
Query: 66 FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-LQRLRVFSLRGYHIYEL--PDS 122
+ L + L LS ++ ++ F L++L++ L + ++
Sbjct: 20 PQVLNTTERLL------LSFNYIR-----TVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68
Query: 123 IGDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRRLKKLC------ADMGNLIK 175
+L LR L+L + I L L++L L L C L ++ L +
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTR 127
Query: 176 LHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLREL--KSLIHLQG-TLKIS 232
L L+ + SL P GKL L+++ +F S + + + L LQG TL
Sbjct: 128 L-DLSKNQIRSLYLHPS-FGKLNSLKSI-DF-----SSNQIFLVCEHELEPLQGKTLSFF 179
Query: 233 KLENIKDIGDAKEARLDGKKNLKELSLNW-TCSTDGLSSTEAETEKDVLDMLKPH--KNL 289
L + + L S +G + + + +
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 290 EQFGICGYGGTKFPTWLGDSSF-----LNLVTLKFEDCGMCTALPSV-GQLPSLKHLTVR 343
G+G ++F ++ L + + V L LK L +
Sbjct: 240 HHIMGAGFGFHNI-KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298
Query: 344 GMSRVNRL----GSKFYGDDSPIPFPCLETLRFED--LQEWEEWIPHGSSQGVERFPKLR 397
N++ FYG L+ L L E + + G PK+
Sbjct: 299 Y----NKINKIADEAFYG------LDNLQVLNLSYNLLGE----LYSSNFYG---LPKVA 341
Query: 398 ELHILRC--SKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSA 455
+ + + + +Q + L L+ L + N L+ +I +P++ + + G K +
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTL-DLRDNALT-TIHFIPSIPDIFLSGNK---LVTL 396
Query: 456 TDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKI--NNIQ----NETCIWK------ 503
+ N + + + R+P L+ L + N ++T
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456
Query: 504 --SHNEL-LQDICSLKRLLITSCPKLQSL 529
N L L L + LQ L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVL 485
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 97 LPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156
+L + I + I L + L L+G + + + + L NL L
Sbjct: 39 AVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLF 96
Query: 157 LEGCRRLKKLCADMGNLIKLHHLN-DSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSG 215
L+ ++K L + + +L KL L+ + N + ++ G+ L L++L +G + +
Sbjct: 97 LDEN-KVKDLSS-LKDLKKLKSLSLEHN--GISDIN-GLVHLPQLESLY---LGNNKITD 148
Query: 216 LRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260
+ L L L TL + I DI L G L+ L L+
Sbjct: 149 ITVLSRLTKLD-TLSLED-NQISDIVP-----LAGLTKLQNLYLS 186
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 33/197 (16%)
Query: 95 SILPKLF-KLQRLRVFSLRG---YHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-NKL 149
+ F + L+ LR ++ P LR L L+LS I + + + L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503
Query: 150 YNLHTLLLEGCRRLKKLCADM---------GNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200
L L L+ L +L L LH LN + E L L
Sbjct: 504 EKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 201 QTL---CNFVVG--KDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLK 255
+ + N + + LKSL +LQ I+ +E K+ +NL
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSL-NLQKN-LITSVE--------KKVFGPAFRNLT 612
Query: 256 ELSL---NWTCSTDGLS 269
EL + + C+ + ++
Sbjct: 613 ELDMRFNPFDCTCESIA 629
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 30/141 (21%), Positives = 45/141 (31%), Gaps = 13/141 (9%)
Query: 95 SILPKLFK-LQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLPESV-NKLYN 151
+ F +L + I +L P+ L L+ LNL + L + N
Sbjct: 39 RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98
Query: 152 LHTLLLEGCRRLKKLCADM-GNLIKLHHLN-DSNTDSLEEMPLG-IGKLTCLQTL----C 204
L L L ++K+ + L L+ N L LG +L LQ L
Sbjct: 99 LTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN--GLSSTKLGTQVQLENLQELLLSNN 155
Query: 205 NFVVGKDSGSGLRELKSLIHL 225
K + SL L
Sbjct: 156 KIQALKSEELDIFANSSLKKL 176
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 46/305 (15%), Positives = 87/305 (28%), Gaps = 44/305 (14%)
Query: 68 DLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127
+L L L ++L L E+P
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293
Query: 128 YLRYLNLSGTVIRT--LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTD 185
+R L+L ++ T + K NL L + L +L L
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA 353
Query: 186 SLEEMPLGIGKLT------------CLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISK 233
+ M G ++ L+ + V + L + + + ++
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYM-AVYVSDITNESLESIGTYLKNLCDFRLVL 412
Query: 234 LENIKDIGDAK-----EARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKN 288
L+ + I D + L G K L+ + T+ + + + N
Sbjct: 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL--------TDLGLSYIGQYSPN 464
Query: 289 LEQFGICGYGGTKFPTWLGDSSFL-------NLVTLKFEDCGMCTA--LPSVGQLPSLKH 339
+ + G + D + NL L+ C +V +LPSL++
Sbjct: 465 VRWMLLGYVGES-------DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517
Query: 340 LTVRG 344
L V+G
Sbjct: 518 LWVQG 522
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 51/315 (16%), Positives = 94/315 (29%), Gaps = 36/315 (11%)
Query: 120 PDSIGDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178
I L LR L +S I+ L SV L L L +L K+ + L H
Sbjct: 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKH 94
Query: 179 LN-DSNTDSLEEMPLG--IGKLTCLQTLCNFVVGKDSGSGLR--ELKSLIHLQGT-LKIS 232
L+ N + + +P+ G ++ L+ L GL L+ L L IS
Sbjct: 95 LDLSFN--AFDALPICKEFGNMSQLKFL-----------GLSTTHLEKSSVLPIAHLNIS 141
Query: 233 KLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQF 292
K+ + ++ +G ++ SL+ T+ + + L+ N++
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCV 200
Query: 293 GICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMC-TALPSVGQLPSLKHLTVRGMSRVNRL 351
+ L L + + + QL + +S +L
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN-VKL 259
Query: 352 GSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILR--CSKLQG 409
+ D L+ L + P + ++I S +
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI-----YEIFSNMNIKNFTVSGTRM 314
Query: 410 T---FPEHLPALEML 421
P + L
Sbjct: 315 VHMLCPSKISPFLHL 329
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 95 SILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-NKLYNLH 153
+ L L L L + LP L L L++S + +LP L L
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 154 TLLLEGCRRLKKLCADM-GNLIKLHHLN-DSNTDSLEEMPLGI-GKLTCLQTL 203
L L+G LK L + KL L+ +N +L E+P G+ L L TL
Sbjct: 128 ELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTL 177
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 60/340 (17%), Positives = 101/340 (29%), Gaps = 61/340 (17%)
Query: 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCR 161
+L L I ++ I L L L + I TL +++ NL L +
Sbjct: 40 QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN- 95
Query: 162 RLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLREL-- 219
+L L D+ L KL +LN L ++ + + L L + + L E+
Sbjct: 96 KLTNL--DVTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNC------ARNTLTEIDV 144
Query: 220 KSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDV 279
L L + I + + + L L CS + ++
Sbjct: 145 SHNTQLT-ELDCHLNKKITKLD------VTPQTQLTTLD----CSFNKITE--------- 184
Query: 280 LDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339
LD + +K L + T L + + L L + T + V L L +
Sbjct: 185 LD-VSQNKLLNRLNC---DTNNI-TKLDLNQNIQLTFLDCSSNKL-TEID-VTPLTQLTY 237
Query: 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLREL 399
N L L TL E I + +L
Sbjct: 238 FDCSV----NPLTEL-----DVSTLSKLTTLHCIQTDLLE--ID------LTHNTQLIYF 280
Query: 400 HILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPAL 439
C K++ H L +L + ++ P L
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 98 PKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLL 157
+ R R LRGY I + + L ++ S IR L + L L TLL+
Sbjct: 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71
Query: 158 EGCRRLKKLCADMGNLIKLHHLNDSN--TDSLEEMPLGIGKLTCLQTLC 204
R + L L L +N L ++ + L L LC
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLC 119
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 27/168 (16%)
Query: 105 RLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRR 162
R +L +I + D+ L +L L L IR + N L +L+TL L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-W 134
Query: 163 LKKLCADM-GNLIKLHHLN-DSNTDSLEEMPLGI-GKLTCLQTL----CNF--VVGKDSG 213
L + + L KL L +N +E +P ++ L L + + +
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNN--PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 214 SGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261
GL LK L +L NIKD+ + L L+EL ++
Sbjct: 193 EGLFNLKYL-NLGMC-------NIKDMPN-----LTPLVGLEELEMSG 227
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 9e-04
Identities = 22/141 (15%), Positives = 54/141 (38%), Gaps = 19/141 (13%)
Query: 115 HIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLI 174
LP D ++ ++ + + I ++ +EG + ++K+ L
Sbjct: 49 DYNHLPTGPLDKYKIQAIDATDSCIM----------SIGFDHMEGLQYVEKI-----RLC 93
Query: 175 KLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKL 234
K H++ D + L ++ + ++ + V + G+ L +L+ L +S L
Sbjct: 94 KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV---TDKGIIALHHFRNLK-YLFLSDL 149
Query: 235 ENIKDIGDAKEARLDGKKNLK 255
+K+ +A +L+
Sbjct: 150 PGVKEKEKIVQAFKTSLPSLE 170
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.98 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.94 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.94 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.93 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.93 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.93 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.93 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.93 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.89 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.88 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.88 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.87 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.86 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.86 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.84 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.84 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.84 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.84 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.83 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.83 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.83 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.83 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.81 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.81 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.8 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.79 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.79 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.78 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.78 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.77 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.76 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.75 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.75 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.73 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.71 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.7 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.7 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.7 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.69 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.69 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.69 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.68 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.68 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.68 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.67 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.65 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.64 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.64 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.64 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.64 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.64 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.62 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.62 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.6 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.6 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.6 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.59 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.58 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.57 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.56 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.53 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.53 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.52 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.5 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.48 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.47 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.47 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.46 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.46 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.46 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.45 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.44 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.44 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.43 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.43 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.42 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.41 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.41 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.39 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.38 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.38 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.38 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.38 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.37 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.35 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.33 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.31 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.3 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.29 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.29 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.28 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.25 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.22 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.21 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.18 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.17 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.14 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.11 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.07 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.07 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.07 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.97 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.97 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.97 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.97 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.75 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.75 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.71 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.7 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.68 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.65 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.63 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.44 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.24 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.22 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.18 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.07 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.0 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.99 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.83 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.82 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.81 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.4 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.27 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.87 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.92 |
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=313.41 Aligned_cols=440 Identities=17% Similarity=0.093 Sum_probs=250.2
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Cc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PD 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~ 121 (543)
+..++.++++|++++|.+..... ..+.++++|++|. +++|.+.+ + .+.+|.++++|++|++++|.++.+ |.
T Consensus 27 p~~~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~---Ls~n~l~~-i---~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 27 PDDIPSSTKNIDLSFNPLKILKS-YSFSNFSELQWLD---LSRCEIET-I---EDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp CTTSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE---CTTCCCCE-E---CTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCCCCCcCEEECCCCCcCEeCh-hhccCCccCcEEe---CCCCcccc-c---CHHHhhchhhcCEeECCCCcccccChh
Confidence 44677899999999999876654 5677777777775 99998885 2 233455999999999999999877 77
Q ss_pred cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCccccccccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTC 199 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 199 (543)
+|+++++|++|++++|.++.+| ..++.+++|++|++++|.... .+|..++++++|++|++++|.+....|..++.+++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 8999999999999999999885 679999999999999985433 57888999999999999999944434556777766
Q ss_pred ccc----ccceEecCCC--CCCh---------------------hhhccccccccceec--cc-----------------
Q 044382 200 LQT----LCNFVVGKDS--GSGL---------------------RELKSLIHLQGTLKI--SK----------------- 233 (543)
Q Consensus 200 L~~----L~~~~~~~~~--~~~~---------------------~~l~~l~~l~~~L~~--~~----------------- 233 (543)
|+. |++..+.... ...+ ..+.++..++ .+.+ ..
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH-VHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCE-EEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccc-cccccccccccCCcccccChHHhhh
Confidence 653 3221111100 0000 0011111111 0000 00
Q ss_pred ----------ccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC
Q 044382 234 ----------LENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP 303 (543)
Q Consensus 234 ----------l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 303 (543)
+..........+. +..+++|+.++++++.... +..+..+++|+.|+++++....+|
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-------------l~~l~~~~~L~~L~l~~n~l~~lp 323 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-------------LEDVPKHFKWQSLSIIRCQLKQFP 323 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-------------CCCCCTTCCCSEEEEESCCCSSCC
T ss_pred hhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-------------hhhccccccCCEEEcccccCcccc
Confidence 0011111222222 5666777777777666522 124556777888888887776666
Q ss_pred CCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeee---CccccCCCCCCCCCCcCeeeccCcccccc
Q 044382 304 TWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRL---GSKFYGDDSPIPFPCLETLRFEDLQEWEE 380 (543)
Q Consensus 304 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 380 (543)
.+ .+++|++|++++|.....+ .+..+++|++|++++|. ++.. ...+ ..+++|++|+++++. +..
T Consensus 324 ~~----~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~------~~~~~L~~L~L~~n~-l~~ 390 (606)
T 3vq2_A 324 TL----DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSD------LGTNSLRHLDLSFNG-AII 390 (606)
T ss_dssp CC----CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHH------HCCSCCCEEECCSCS-EEE
T ss_pred cC----CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhh------ccCCcccEeECCCCc-ccc
Confidence 44 3677777877777544433 45567777777777663 3322 1111 224555555555532 222
Q ss_pred cccCCCCCCCCCCCcccEEeeccCcCccCCCC----CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCee--
Q 044382 381 WIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKVV-- 451 (543)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~~-- 451 (543)
.. .. +..+++|++|++++| .+++..| ..+++|++|++.+|.... ..+..+++|+.|++++|....
T Consensus 391 ~~--~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 391 MS--AN---FMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp EC--CC---CTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ch--hh---ccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 11 11 344555555555553 3332222 123445555554443222 123334445555555444332
Q ss_pred eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccc
Q 044382 452 WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 452 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 530 (543)
.+..+..+++|++|++++| .++.+++..+..+++|++|++++| +++.+. |..+..+++|++|++++| +++.+|
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~---~~~~~~l~~L~~L~l~~N-~l~~~p 537 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLD---SSHYNQLYSLSTLDCSFN-RIETSK 537 (606)
T ss_dssp ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEE---GGGTTTCTTCCEEECTTS-CCCCEE
T ss_pred hHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcC---HHHccCCCcCCEEECCCC-cCcccC
Confidence 3344444455555555553 333333333444455555555543 333332 334444444555555444 244444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=305.86 Aligned_cols=433 Identities=14% Similarity=0.086 Sum_probs=246.2
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Cc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PD 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~ 121 (543)
+..++..+++|++++|.+..... .++.++++|++|. +++|.+.+ ..+.+|.++++|++|++++|.++.+ |.
T Consensus 28 P~~l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~---Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 28 PGTLPNSTECLEFSFNVLPTIQN-TTFSRLINLTFLD---LTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp CTTSCTTCCEEECTTCCCSEECT-TTSTTCTTCSEEE---CTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred cCCCCCcCcEEEccCCccCcCCh-hHhccCccceEEE---CCCCccce----eChhhccCccccCeeeCCCCcccccChh
Confidence 45678899999999999876654 6677777777775 89998875 3344566999999999999998866 66
Q ss_pred cccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhh--hHHHhhhcccceeecCCCCCcccc-ccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKL--CADMGNLIKLHHLNDSNTDSLEEM-PLGIGKL 197 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l 197 (543)
+|+.+++|++|++++|.++.+ |..++.+++|++|++++|. +..+ |. +..+++|++|++++|. +..+ |..++.+
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 176 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNA-IHYLSKEDMSSL 176 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSC-CCEECHHHHHTT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCc-ccccChhhhhhh
Confidence 799999999999999999987 6778999999999999984 4443 44 4458999999999998 5544 5567778
Q ss_pred cccc--cccceEecCCC--CCChh--------------------hhccc--------------------------c--cc
Q 044382 198 TCLQ--TLCNFVVGKDS--GSGLR--------------------ELKSL--------------------------I--HL 225 (543)
Q Consensus 198 ~~L~--~L~~~~~~~~~--~~~~~--------------------~l~~l--------------------------~--~l 225 (543)
++|+ .|++..+.... ...+. .+..+ . .+
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 8877 33322211110 00000 00000 0 11
Q ss_pred ccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCC-
Q 044382 226 QGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT- 304 (543)
Q Consensus 226 ~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~- 304 (543)
+ .+.+.. ..........+..+++|++|++++|..+.. +..+..+++|++|+++++....++.
T Consensus 257 ~-~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l------------p~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 257 E-SINLQK----HYFFNISSNTFHCFSGLQELDLTATHLSEL------------PSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp E-EEECTT----CCCSSCCTTTTTTCTTCSEEECTTSCCSCC------------CSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred e-EEEeec----CccCccCHHHhccccCCCEEeccCCccCCC------------ChhhcccccCCEEECccCCcCcCchh
Confidence 1 111111 011122223367778888888877776433 2345556677777777766554422
Q ss_pred CCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeee--CccccCCCCCCCCCCcCeeeccCcccccc
Q 044382 305 WLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRL--GSKFYGDDSPIPFPCLETLRFEDLQEWEE 380 (543)
Q Consensus 305 ~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 380 (543)
.+. .+++|++|++++|.....++ .+..+++|++|++++|...... ... ...+++|++|+++++. +..
T Consensus 320 ~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~-l~~ 390 (606)
T 3t6q_A 320 SAS--NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYNE-PLS 390 (606)
T ss_dssp CGG--GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT------TTTCTTCCEEECCSCS-CEE
T ss_pred hhh--ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh------cccCCCCCEEECCCCc-CCc
Confidence 333 26677777777665554444 3566677777777666322221 111 2335566666665542 222
Q ss_pred cccCCCCCCCCCCCcccEEeeccCcCccCCCC----CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCee--
Q 044382 381 WIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKVV-- 451 (543)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~~-- 451 (543)
..... +..+++|++|++++| .+++..| ..+++|++|++.+|.... ..+..+++|++|++++|....
T Consensus 391 ~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 391 LKTEA----FKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp ECTTT----TTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred CCHHH----hcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 11111 234555555555553 3332222 123455555555543221 123334555555555554322
Q ss_pred e--ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccC
Q 044382 452 W--RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSC 523 (543)
Q Consensus 452 ~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c 523 (543)
+ +..+..+++|++|++++| .++.+++..+..+++|++|++++| +++.+. |..+..+++| +|++++|
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSS---IEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGG---GGGGTTCCSC-EEECCSS
T ss_pred cccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCC---hhHhCccccc-EEECcCC
Confidence 1 123444555555555553 344443333455555555555552 344333 3344444555 5555444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=295.28 Aligned_cols=446 Identities=16% Similarity=0.137 Sum_probs=309.7
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-c
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-D 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~ 121 (543)
+..++.++++|+++.|.+..... .++..+++|++|. +++|.+.+ +++ ..|.++++|++|++++|.++.++ .
T Consensus 23 p~~l~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~---Ls~n~i~~-i~~---~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 23 PDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLD---LSRCEIQT-IED---GAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp CSSSCSSCCEEECCSCCCCEECT-TTTTTCSSCCEEE---CTTCCCCE-ECT---TTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccccEEEccCCccCccCh-hHhhCCCCceEEE---CCCCcCCc-cCc---ccccCchhCCEEeCcCCcCCccCHh
Confidence 34577899999999999876654 5666777777775 89998875 222 34558999999999999998775 6
Q ss_pred cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCcccc-cccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEM-PLGIGKLT 198 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~ 198 (543)
+|+++++|++|++++|.++.+|. .++.+++|++|++++|.... .+|..++++++|++|++++|. +..+ |..++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHH
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchh
Confidence 79999999999999999998865 68999999999999985333 468889999999999999999 5544 45677777
Q ss_pred cc----ccccceEecCCC--CCChhh---------------------hcccccccc-ceecccc----------------
Q 044382 199 CL----QTLCNFVVGKDS--GSGLRE---------------------LKSLIHLQG-TLKISKL---------------- 234 (543)
Q Consensus 199 ~L----~~L~~~~~~~~~--~~~~~~---------------------l~~l~~l~~-~L~~~~l---------------- 234 (543)
+| +.|++..+.... ...+.. +..+..++. .+.....
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 77 333322111100 000000 000000000 0000000
Q ss_pred -----------cCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC
Q 044382 235 -----------ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP 303 (543)
Q Consensus 235 -----------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 303 (543)
.............+..+++|++|+++++.... ....+..+ +|+.|.++++....+|
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------l~~~~~~~-~L~~L~l~~n~~~~l~ 320 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------------VKDFSYNF-GWQHLELVNCKFGQFP 320 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS------------CCBCCSCC-CCSEEEEESCBCSSCC
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh------------hhhhhccC-CccEEeeccCcccccC
Confidence 00001111222335566778888887766532 22334445 7888888888776666
Q ss_pred CCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeC---ccccCCCCCCCCCCcCeeeccCcccccc
Q 044382 304 TWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLG---SKFYGDDSPIPFPCLETLRFEDLQEWEE 380 (543)
Q Consensus 304 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 380 (543)
.. .+++|+.|++.+|......+. ..+++|++|++++|. ++... .. ...+++|++|+++++.. ..
T Consensus 321 ~~----~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~------~~~~~~L~~L~l~~n~l-~~ 387 (570)
T 2z63_A 321 TL----KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQS------DFGTTSLKYLDLSFNGV-IT 387 (570)
T ss_dssp BC----BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHH------HHTCSCCCEEECCSCSE-EE
T ss_pred cc----cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCcccccccc------ccccCccCEEECCCCcc-cc
Confidence 52 377888888888866544444 678899999998874 33321 22 23478999999988643 32
Q ss_pred cccCCCCCCCCCCCcccEEeeccCcCccCCCC----CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCe--e
Q 044382 381 WIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKV--V 451 (543)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~--~ 451 (543)
.... +..+++|++|++++| .+++..| ..+++|++|++.+|.... ..+..+++|+.|++++|... .
T Consensus 388 ~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 388 MSSN-----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp EEEE-----EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred cccc-----ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 2221 467999999999995 6664433 357899999999986544 24566899999999999875 4
Q ss_pred eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccch
Q 044382 452 WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 452 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 531 (543)
++..+..+++|++|++++| .++.+++..+..+++|++|++++| +++.++ +..+..+++|++|++++||--...+.
T Consensus 462 ~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCC---TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred chhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCC---HHHhhcccCCcEEEecCCcccCCCcc
Confidence 7888999999999999996 677775556899999999999995 788886 55788999999999999865555544
Q ss_pred hhh
Q 044382 532 EEE 534 (543)
Q Consensus 532 ~~~ 534 (543)
...
T Consensus 537 ~~~ 539 (570)
T 2z63_A 537 IDY 539 (570)
T ss_dssp THH
T ss_pred hHH
Confidence 333
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=315.90 Aligned_cols=95 Identities=4% Similarity=-0.054 Sum_probs=78.5
Q ss_pred cCCCCccceEEEcCCCCe-eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCc-cccccCccccc
Q 044382 433 IASLPALCKMEIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNET-CIWKSHNELLQ 510 (543)
Q Consensus 433 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~l~ 510 (543)
+..+++|+.|++++|... .+|..++.+++|++|++++|..-..+|.. ++.+++|++|++++| +++ .+ |..+.
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N-~l~g~i----p~~l~ 701 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSN-KLDGRI----PQAMS 701 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS-CCEECC----CGGGG
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCC-cccCcC----ChHHh
Confidence 334688999999999876 58889999999999999997544467766 899999999999995 565 66 67899
Q ss_pred cCCccceEeeccCCCCcccchhh
Q 044382 511 DICSLKRLLITSCPKLQSLVAEE 533 (543)
Q Consensus 511 ~l~~L~~L~l~~c~~l~~~~~~~ 533 (543)
.+++|++|++++|+--..+|...
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSS
T ss_pred CCCCCCEEECcCCcccccCCCch
Confidence 99999999999997666676544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=299.56 Aligned_cols=463 Identities=16% Similarity=0.109 Sum_probs=250.5
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD- 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~- 121 (543)
+..++.++++|++++|.+..... ..+.++++|++|. +++|.+.+ ..+..|.++++|++|++++|.++.+|.
T Consensus 20 p~~~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~---Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 20 PDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLD---VGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp CSCSCTTCSEEECCSSCCCCCCG-GGGGGGTTCSEEE---CCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred ccccCCCCcEEECCCCCCCCcCH-HHHhCCCcCcEEE---CCCCccCc----cCHHHHhcccCcCEEECCCCccCccChh
Confidence 34577899999999998876654 5677778888775 88888876 233445588999999999999988876
Q ss_pred cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccc-cccc--cc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP-LGIG--KL 197 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~--~l 197 (543)
.|+++++|++|++++|.++.+| ..++.+++|++|++++|......|..++++++|++|++++|. +..++ ..++ .+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccc
Confidence 5889999999999999988885 568889999999999885444445557788888888888888 44444 3332 44
Q ss_pred cccccccceEecCCC--CCChhhhcccc------------------------ccccceeccc------------------
Q 044382 198 TCLQTLCNFVVGKDS--GSGLRELKSLI------------------------HLQGTLKISK------------------ 233 (543)
Q Consensus 198 ~~L~~L~~~~~~~~~--~~~~~~l~~l~------------------------~l~~~L~~~~------------------ 233 (543)
++|+.|++..+.... ...+..+.++. .++ .+.+..
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~-~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR-NLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC-EEECTTSCCCEECTTTTGGGGGSC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc-EEEccCCcccccChhHhhccCcCC
Confidence 677777544332211 11111221111 111 111110
Q ss_pred -----ccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCC------CC
Q 044382 234 -----LENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGT------KF 302 (543)
Q Consensus 234 -----l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~ 302 (543)
+.. .......+..+..+++|++|++++|...... ...+..+++|+.|+++++... .+
T Consensus 250 L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 250 LTMLDLSY-NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-----------SHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp CCEEECTT-SCCCEECTTTTTTCTTCCEEECCSCCBSEEC-----------TTTTTTCTTCCEEECTTCBCCC------C
T ss_pred CCEEECCC-CCcCccCcccccCcccccEeeCCCCccCccC-----------hhhhcCCCCccEEeccchhhhcccccccc
Confidence 000 0011111223455566666666555432211 112233344444444332211 11
Q ss_pred CCC--CCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccc-eeeeCcc-------------------cc--C
Q 044382 303 PTW--LGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSR-VNRLGSK-------------------FY--G 357 (543)
Q Consensus 303 ~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~-l~~~~~~-------------------~~--~ 357 (543)
|.. .....+++|++|++++|...+..+ .+..+++|++|++++|.. +..+... .. .
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence 110 000124445555555444333222 344445555555544320 0000000 00 0
Q ss_pred CCCCCCCCCcCeeeccCcccccccccCCC--------------------CCCCCCCCcccEEeeccCcCcc--CCCCC--
Q 044382 358 DDSPIPFPCLETLRFEDLQEWEEWIPHGS--------------------SQGVERFPKLRELHILRCSKLQ--GTFPE-- 413 (543)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--------------------~~~~~~~~~L~~L~l~~c~~l~--~~lp~-- 413 (543)
......+++|+.|+++++.....+..... ...+..+++|++|++++| .++ +.+|.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~p~~~ 476 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPF 476 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBCTTCSSCTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccccccCCccc
Confidence 00022344555555554322111110000 000223444444444442 222 12332
Q ss_pred -CCCCccEEEEecccCccc---ccCCCCccceEEEcCCCCeeee---------cccCCCCCCceEEEcCCCCCcccCCCc
Q 044382 414 -HLPALEMLVIVECNELSI---SIASLPALCKMEIGGCKKVVWR---------SATDHLGSQNSVVCRDTSNQVFLSGPL 480 (543)
Q Consensus 414 -~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~---------~~~~~~~~L~~L~l~~c~~l~~l~~~~ 480 (543)
.+++|+.|++.++..... .+..+++|+.|++++|....++ ..+..+++|++|++++| .++.+|...
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~ 555 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV 555 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 344566666665543221 2344667777777776654421 12566777777777774 666777766
Q ss_pred CCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccchhhh
Q 044382 481 KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEEE 534 (543)
Q Consensus 481 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~ 534 (543)
|..+++|++|++++ ++++.++ +..+..+++|+.|++++| +++.++....
T Consensus 556 ~~~l~~L~~L~Ls~-N~l~~l~---~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 604 (680)
T 1ziw_A 556 FKDLFELKIIDLGL-NNLNTLP---ASVFNNQVSLKSLNLQKN-LITSVEKKVF 604 (680)
T ss_dssp TTTCTTCCEEECCS-SCCCCCC---TTTTTTCTTCCEEECTTS-CCCBCCHHHH
T ss_pred cccccCcceeECCC-CCCCcCC---HhHhCCCCCCCEEECCCC-cCCccChhHh
Confidence 77778888888877 5777775 335667778888888777 6777665443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=295.96 Aligned_cols=430 Identities=16% Similarity=0.075 Sum_probs=314.3
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-cccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~ 124 (543)
-..++++|+++.|.+..... .++.++++|++|. +++|.+.+ ..+..|.++++|++|++++|.+..++ ..++
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~---Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIED-KAWHGLHHLSNLI---LTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp TCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEE---CTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred CCccCcEEeCCCCcccccCH-HHhhchhhcCEeE---CCCCcccc----cChhhcCCcccCCEEEccCCccccccccccC
Confidence 45789999999998876544 5566777777775 99999886 33456669999999999999999876 6799
Q ss_pred CcccccEEecCCCCcc--ccchhhhcccccceeecCCCchhhhhhHHHhhhcccc----eeecCCCCCcccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIR--TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLH----HLNDSNTDSLEEMPLGIGKLT 198 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~----~L~l~~~~~~~~lp~~l~~l~ 198 (543)
++++|++|++++|.++ .+|..++++++|++|++++|......|..++.+++|+ +|++++|. +..++.......
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~ 204 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI 204 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccccCc
Confidence 9999999999999998 4799999999999999999854444455577777665 79999888 666666544444
Q ss_pred ccccccceEecCC----------------------------------------------------C----CCChhhhccc
Q 044382 199 CLQTLCNFVVGKD----------------------------------------------------S----GSGLRELKSL 222 (543)
Q Consensus 199 ~L~~L~~~~~~~~----------------------------------------------------~----~~~~~~l~~l 222 (543)
+|+.|++..+... . ......+..+
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l 284 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence 6666654332110 0 0001112233
Q ss_pred cccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCC
Q 044382 223 IHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF 302 (543)
Q Consensus 223 ~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 302 (543)
..++ .+.+...... ..+ .+..+++|++|++++|..... ..+ .+++|+.|+++++.....
T Consensus 285 ~~L~-~L~l~~~~~~-----~l~-~l~~~~~L~~L~l~~n~l~~l-------------p~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 285 ANVS-AMSLAGVSIK-----YLE-DVPKHFKWQSLSIIRCQLKQF-------------PTL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp TTCS-EEEEESCCCC-----CCC-CCCTTCCCSEEEEESCCCSSC-------------CCC-CCSSCCEEEEESCSSCEE
T ss_pred CCCC-EEEecCccch-----hhh-hccccccCCEEEcccccCccc-------------ccC-CCCccceeeccCCcCccc
Confidence 3333 3333322211 111 477889999999998886322 233 789999999999853322
Q ss_pred CCCCCCCCCCCccEEEeecCCCCCC--CC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCccccc
Q 044382 303 PTWLGDSSFLNLVTLKFEDCGMCTA--LP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWE 379 (543)
Q Consensus 303 ~~~~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 379 (543)
. .+. .+++|++|++++|..... .+ .+..+++|++|++++|. ++.++.. ...+++|+.|++.++.. .
T Consensus 344 ~-~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~------~~~l~~L~~L~l~~n~l-~ 412 (606)
T 3vq2_A 344 F-KKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSAN------FMGLEELQHLDFQHSTL-K 412 (606)
T ss_dssp C-CCC--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCC------CTTCTTCCEEECTTSEE-E
T ss_pred h-hhc--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhh------ccCCCCCCeeECCCCcc-C
Confidence 1 222 489999999999866443 24 56789999999999984 5555533 34589999999998643 3
Q ss_pred ccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCcc----cccCCCCccceEEEcCCCCeee
Q 044382 380 EWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELS----ISIASLPALCKMEIGGCKKVVW 452 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~ 452 (543)
....... +..+++|++|++++| .+++..|. .+++|++|++.+|.... ..+..+++|+.|++++|.....
T Consensus 413 ~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 413 RVTEFSA---FLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp STTTTTT---TTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccChhh---hhccccCCEEECcCC-CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 3322122 578999999999996 66656664 56799999999986443 3466789999999999988765
Q ss_pred -ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCC-ccceEeeccCCCC
Q 044382 453 -RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC-SLKRLLITSCPKL 526 (543)
Q Consensus 453 -~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~-~L~~L~l~~c~~l 526 (543)
+..+..+++|++|++++| .++.+++..+..+++|++|++++| +++.+ |..+..++ +|++|+++++|-.
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~----p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETS----KGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCE----ESCGGGSCTTCCEEECCSCCCC
T ss_pred ChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCccc----CHhHhhhcccCcEEEccCCCcc
Confidence 567888999999999996 677665555899999999999995 79999 44688887 6999999997543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=312.62 Aligned_cols=412 Identities=19% Similarity=0.124 Sum_probs=230.2
Q ss_pred cCCCcccccccccccc--ccccCCeeeEEEecCCCcc-ccCccc-cCcccccEEecCCCCcccc-chh---hhcccccce
Q 044382 83 LSNGFLSGYLACSILP--KLFKLQRLRVFSLRGYHIY-ELPDSI-GDLRYLRYLNLSGTVIRTL-PES---VNKLYNLHT 154 (543)
Q Consensus 83 l~~n~~~~~~~~~~~~--~~~~l~~L~~L~Ls~~~l~-~lp~~~-~~l~~L~~L~L~~~~i~~l-p~~---~~~l~~L~~ 154 (543)
+++|.+.+ .++. .++++++|++|++++|.+. .+|..+ .++++|++|++++|.++.. |.. +.++++|++
T Consensus 107 Ls~n~l~~----~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 107 LSRNSLSG----PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182 (768)
T ss_dssp CCSSEEEE----EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCE
T ss_pred CCCCcCCC----cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCE
Confidence 55555554 2233 4445556666666655544 223332 4555555666555555533 222 445555555
Q ss_pred eecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccc
Q 044382 155 LLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKL 234 (543)
Q Consensus 155 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l 234 (543)
|++++|...+..| ++.+++|++|++++|.+.+.+|. ++.+++|++|++..+... ......+..++.++ .+.+...
T Consensus 183 L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~-~L~Ls~n 257 (768)
T 3rgz_A 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-GDFSRAISTCTELK-LLNISSN 257 (768)
T ss_dssp EECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-SCHHHHTTTCSSCC-EEECCSS
T ss_pred EECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-CcccHHHhcCCCCC-EEECCCC
Confidence 5555553222222 24455555555555553333333 555555555543322211 11122333333333 3333221
Q ss_pred cCcC------------------CccchhhhccCC-ccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEe
Q 044382 235 ENIK------------------DIGDAKEARLDG-KKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGIC 295 (543)
Q Consensus 235 ~~~~------------------~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 295 (543)
.... ......+..+.. +++|++|++++|.... ..+..+..+++|++|+++
T Consensus 258 ~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~-----------~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG-----------AVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-----------CCCGGGGGCTTCCEEECC
T ss_pred cccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-----------ccchHHhcCCCccEEECC
Confidence 1100 011111111222 2455555554443211 122334455666666666
Q ss_pred ccCCC-CCCCC-CCCCCCCCccEEEeecCCCCCCCC-CCCCCC-ccceeeecCccceeeeCccccCCCCCCCCCCcCeee
Q 044382 296 GYGGT-KFPTW-LGDSSFLNLVTLKFEDCGMCTALP-SVGQLP-SLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLR 371 (543)
Q Consensus 296 ~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 371 (543)
+|... .+|.. +.. +++|++|++++|...+.++ .+..++ +|++|++++|.....+..... ...+++|++|+
T Consensus 327 ~n~l~~~ip~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~----~~~~~~L~~L~ 400 (768)
T 3rgz_A 327 SNNFSGELPMDTLLK--MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC----QNPKNTLQELY 400 (768)
T ss_dssp SSEEEEECCHHHHTT--CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT----CSTTCCCCEEE
T ss_pred CCcccCcCCHHHHhc--CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh----hcccCCccEEE
Confidence 65543 34432 332 5566666666665443444 444454 666666666633222222111 12367788888
Q ss_pred ccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCcc---cccCCCCccceEEEc
Q 044382 372 FEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELS---ISIASLPALCKMEIG 445 (543)
Q Consensus 372 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~ 445 (543)
+.++....... ..++.+++|++|++++| .+++.+|. .+++|+.|++.+|.... ..+..+++|+.|+++
T Consensus 401 L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 401 LQNNGFTGKIP-----PTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCSSEEEEECC-----GGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCCccccccC-----HHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 88864322221 11568899999999995 77767774 46789999998886442 345568999999999
Q ss_pred CCCCe-eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCC
Q 044382 446 GCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCP 524 (543)
Q Consensus 446 ~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~ 524 (543)
+|... .++..+..+++|++|++++|.....+|.. +..+++|++|++++|+-...+ |..+..+++|++|++++|+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNI----PAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEEC----CGGGGGCTTCCEEECCSSE
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCcC----CHHHcCCCCCCEEECCCCc
Confidence 99886 57778888999999999997544456654 788999999999996443466 6689999999999999997
Q ss_pred CCcccch
Q 044382 525 KLQSLVA 531 (543)
Q Consensus 525 ~l~~~~~ 531 (543)
-...+|.
T Consensus 550 l~g~ip~ 556 (768)
T 3rgz_A 550 FNGTIPA 556 (768)
T ss_dssp EESBCCG
T ss_pred cCCcCCh
Confidence 6556664
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=294.13 Aligned_cols=393 Identities=14% Similarity=0.116 Sum_probs=274.6
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeeccc-CCCcccccccc-------------------------------
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRL-SNGFLSGYLAC------------------------------- 94 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l-~~n~~~~~~~~------------------------------- 94 (543)
..+|+.|++.++.+.+... .++.+++.|+.|. + +.|.+.|..+.
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~Ld---Lss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~ 397 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLS---FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397 (876)
T ss_dssp TSCEEEEECTTTCCEEEEC-GGGGGCTTCCEEE---SCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCCEEEEECccCCCCCcCc-hHHhccccceEee---ecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcc
Confidence 4679999999998876655 6777888888876 7 66654432110
Q ss_pred -----------------------------------------ccccccccCCeeeEEEecCCCccc---------------
Q 044382 95 -----------------------------------------SILPKLFKLQRLRVFSLRGYHIYE--------------- 118 (543)
Q Consensus 95 -----------------------------------------~~~~~~~~l~~L~~L~Ls~~~l~~--------------- 118 (543)
.+|+.++++++|++|+|++|.++.
T Consensus 398 ~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp GGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 056678899999999999999887
Q ss_pred ---cCcccc--CcccccEEecCCCCcc-ccchhhhcccccceeecCCCc-hhh-hhhHHHhhhc-------ccceeecCC
Q 044382 119 ---LPDSIG--DLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCR-RLK-KLCADMGNLI-------KLHHLNDSN 183 (543)
Q Consensus 119 ---lp~~~~--~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~-~~~-~l~~~~~~l~-------~L~~L~l~~ 183 (543)
+|..++ ++++|++|+|++|.+. .+|..++.+++|++|++++|. ..+ .+|..++.++ +|++|++++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 888877 9999999999999765 779899999999999999986 334 6888888887 999999999
Q ss_pred CCCcccccc--ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 184 TDSLEEMPL--GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 184 ~~~~~~lp~--~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
|. +..+|. .++.+++|+.|++..+... .++ .+..+++|+.|++++
T Consensus 558 N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-------------------------------~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 558 NN-LEEFPASASLQKMVKLGLLDCVHNKVR-------------------------------HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SC-CCBCCCHHHHTTCTTCCEEECTTSCCC-------------------------------BCC-CCCTTSEESEEECCS
T ss_pred Cc-CCccCChhhhhcCCCCCEEECCCCCcc-------------------------------cch-hhcCCCcceEEECcC
Confidence 99 558888 7888888888854222110 011 266778888888887
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCC-CcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCC----C--CC
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKN-LEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSV----G--QL 334 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~--~l 334 (543)
|.... .+..+..+++ |+.|++++|.+..+|.++.....++|+.|++++|...+.++.+ . .+
T Consensus 605 N~l~~------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 605 NQIEE------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SCCSC------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred Ccccc------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 77632 2234566777 8888888888778887766544456899999888776554422 2 44
Q ss_pred CccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCC---CCCCCCCcccEEeeccCcCccCCC
Q 044382 335 PSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSS---QGVERFPKLRELHILRCSKLQGTF 411 (543)
Q Consensus 335 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~l 411 (543)
++|++|++++|. ++.++.... ..+++|+.|+++++ .+..+...... ....++++|++|+|++| +++ .+
T Consensus 673 ~~L~~L~Ls~N~-L~~lp~~~~-----~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~-~l 743 (876)
T 4ecn_A 673 INASTVTLSYNE-IQKFPTELF-----ATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT-SL 743 (876)
T ss_dssp CCEEEEECCSSC-CCSCCHHHH-----HTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC-CC
T ss_pred CCcCEEEccCCc-CCccCHHHH-----ccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc-cc
Confidence 588888888873 444433221 24778888888875 33332221110 00223458999999885 777 67
Q ss_pred CC-----CCCCccEEEEecccCcc--cccCCCCccceEEEcCCC------C-eeeecccCCCCCCceEEEcCCCCCcccC
Q 044382 412 PE-----HLPALEMLVIVECNELS--ISIASLPALCKMEIGGCK------K-VVWRSATDHLGSQNSVVCRDTSNQVFLS 477 (543)
Q Consensus 412 p~-----~l~~L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~------~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 477 (543)
|. .+++|+.|++.++.... ..+..+++|+.|+|++|. . ..++..+..+++|++|++++| .++.+|
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip 822 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVD 822 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccC
Confidence 63 45677777777764332 234457888888887643 2 236667777888888888886 557777
Q ss_pred CCcCCCCCCccEEecccCCCCcccc
Q 044382 478 GPLKPRIPKLEELKINNIQNETCIW 502 (543)
Q Consensus 478 ~~~~~~~~~L~~L~l~~c~~l~~l~ 502 (543)
.. + .++|+.|++++| .+..+.
T Consensus 823 ~~-l--~~~L~~LdLs~N-~l~~i~ 843 (876)
T 4ecn_A 823 EK-L--TPQLYILDIADN-PNISID 843 (876)
T ss_dssp SC-C--CSSSCEEECCSC-TTCEEE
T ss_pred Hh-h--cCCCCEEECCCC-CCCccC
Confidence 76 2 268888888884 455553
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=299.97 Aligned_cols=431 Identities=16% Similarity=0.145 Sum_probs=251.3
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Ccccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~ 124 (543)
.+.++++|+++.|.+..... ..+..+++|++|. +++|...+.+++. +|.++++|++|+|++|.+..+ |.+|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~Ld---Ls~n~~~~~i~~~---~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLE---LGSQYTPLTIDKE---AFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEE---ECTTCCCCEECTT---TTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccCh-hHCcccccCeEEe---CCCCCCccccCHH---HhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 88999999999999876544 5566666666665 8888666544333 445999999999999999876 78899
Q ss_pred CcccccEEecCCCCccc-cchh--hhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCccccccccccc--c
Q 044382 125 DLRYLRYLNLSGTVIRT-LPES--VNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLGIGKL--T 198 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l--~ 198 (543)
++++|++|+|++|.+++ +|.. +..+++|++|++++|......+ ..++++++|++|++++|.+....+..+..+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 99999999999999985 4554 8899999999999985444333 568999999999999999555566667766 7
Q ss_pred ccccccceEecCCCCCChhhhcccc------ccccceecccccCcCC--------------------------------c
Q 044382 199 CLQTLCNFVVGKDSGSGLRELKSLI------HLQGTLKISKLENIKD--------------------------------I 240 (543)
Q Consensus 199 ~L~~L~~~~~~~~~~~~~~~l~~l~------~l~~~L~~~~l~~~~~--------------------------------~ 240 (543)
+|+.|++..+...... ...+..+. .++ .+.+........ .
T Consensus 175 ~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SSCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred ccceEECCCCcccccc-ccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 7877765443322211 01111111 122 222221110000 0
Q ss_pred cchhhhccCCc--cccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCC-CCCCCCCCCccEE
Q 044382 241 GDAKEARLDGK--KNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT-WLGDSSFLNLVTL 317 (543)
Q Consensus 241 ~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L 317 (543)
.......+.++ ++|+.|++++|..... ....+..+++|+.|++++|....++. .+. .+++|++|
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L 319 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSL-----------NSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVL 319 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEE-----------CSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEE
T ss_pred CCCChhhhhccccCCccEEECCCCccccc-----------ChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEE
Confidence 01111112222 4677777766554211 12345566777777777776654432 333 36777777
Q ss_pred EeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcc
Q 044382 318 KFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKL 396 (543)
Q Consensus 318 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 396 (543)
++++|......+ .+..+++|++|++++| .++.+.... ...+++|+.|+++++. ++. ...+++|
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~---------i~~~~~L 383 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQT-----FKFLEKLQTLDLRDNA-LTT---------IHFIPSI 383 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSC-----SCSCCCCCEEEEETCC-SCC---------CSSCCSC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhh-----hcCCCCCCEEECCCCC-CCc---------ccCCCCc
Confidence 777776544434 5677777777777776 333333221 2346777777777642 221 1235666
Q ss_pred cEEeeccCcCccCCCCCCC-------------------------CCccEEEEecccCccc----ccCCCCccceEEEcCC
Q 044382 397 RELHILRCSKLQGTFPEHL-------------------------PALEMLVIVECNELSI----SIASLPALCKMEIGGC 447 (543)
Q Consensus 397 ~~L~l~~c~~l~~~lp~~l-------------------------~~L~~L~l~~~~~l~~----~~~~~~~L~~L~l~~~ 447 (543)
+.|++++ ++++ .+|... ++|+.|++.++..... .+..+++|+.|++++|
T Consensus 384 ~~L~l~~-N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 384 PDIFLSG-NKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp SEEEEES-CCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred chhccCC-CCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 6666666 3555 444433 4444444444332210 1122344444444444
Q ss_pred CCee------eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeec
Q 044382 448 KKVV------WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLIT 521 (543)
Q Consensus 448 ~~~~------~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~ 521 (543)
.... .+..+..+++|++|++++| .++.++...+..+++|++|++++ ++++.++ +..+. ++|+.|+++
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~---~~~~~--~~L~~L~Ls 534 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS-NRLTVLS---HNDLP--ANLEILDIS 534 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEES-CCCSSCC---CCCCC--SCCCEEEEE
T ss_pred ccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCC-CCCCccC---hhhhh--ccccEEECC
Confidence 4321 1123444555555555553 44455544455555555555555 3555553 22222 555555555
Q ss_pred cC
Q 044382 522 SC 523 (543)
Q Consensus 522 ~c 523 (543)
++
T Consensus 535 ~N 536 (844)
T 3j0a_A 535 RN 536 (844)
T ss_dssp EE
T ss_pred CC
Confidence 55
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=291.25 Aligned_cols=417 Identities=13% Similarity=0.116 Sum_probs=287.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCcc------cc-------------------------------
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFL------SG------------------------------- 90 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~------~~------------------------------- 90 (543)
.+|+.|++.++.+.+... .++.+++.|++|. +++|.+ .+
T Consensus 81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~---Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLA---LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEE---SCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCC-hHHhcCccceEEE---CcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchh
Confidence 689999999998876655 6777888888886 777744 11
Q ss_pred -------------------------------------ccccccccccccCCeeeEEEecCCCccc---------------
Q 044382 91 -------------------------------------YLACSILPKLFKLQRLRVFSLRGYHIYE--------------- 118 (543)
Q Consensus 91 -------------------------------------~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--------------- 118 (543)
.+.. +|..++++++|++|+|++|.++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 1222 56678899999999999999987
Q ss_pred ---cCcccc--CcccccEEecCCCCcc-ccchhhhcccccceeecCCCc-hhh-hhhHHHhhh------cccceeecCCC
Q 044382 119 ---LPDSIG--DLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCR-RLK-KLCADMGNL------IKLHHLNDSNT 184 (543)
Q Consensus 119 ---lp~~~~--~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~-~~~-~l~~~~~~l------~~L~~L~l~~~ 184 (543)
+|..++ ++++|++|++++|.+. .+|..++++++|++|++++|. ..+ .+|..++.+ ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 999988 9999999999999876 679999999999999999986 444 689888887 99999999999
Q ss_pred CCcccccc--ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeee
Q 044382 185 DSLEEMPL--GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262 (543)
Q Consensus 185 ~~~~~lp~--~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (543)
. +..+|. .++.+++|+.|++..+... ..++ .+..+++|++|++++|
T Consensus 316 ~-l~~ip~~~~l~~l~~L~~L~L~~N~l~------------------------------g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 316 N-LKTFPVETSLQKMKKLGMLECLYNQLE------------------------------GKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp C-CSSCCCHHHHTTCTTCCEEECCSCCCE------------------------------EECC-CCEEEEEESEEECCSS
T ss_pred c-CCccCchhhhccCCCCCEEeCcCCcCc------------------------------cchh-hhCCCCCCCEEECCCC
Confidence 9 568998 8999999988864322111 0011 2556677777777766
Q ss_pred cCCCCCCCcccccHHHHhcccCCCCC-CcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCC-------C
Q 044382 263 CSTDGLSSTEAETEKDVLDMLKPHKN-LEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVG-------Q 333 (543)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-------~ 333 (543)
... ..+..+..+++ |+.|++++|....+|.++....+++|+.|++++|...+..| .+. .
T Consensus 364 ~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 364 QIT------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEE------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred ccc------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 542 12334555667 88888888887777776665445578888888887766555 455 6
Q ss_pred CCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCC---CCCCCCCcccEEeeccCcCccCC
Q 044382 334 LPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSS---QGVERFPKLRELHILRCSKLQGT 410 (543)
Q Consensus 334 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~ 410 (543)
+++|++|++++| .++.++... ...+++|++|+++++. +..+...... .....+++|++|++++| .++ .
T Consensus 432 ~~~L~~L~Ls~N-~l~~lp~~~-----~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~ 502 (636)
T 4eco_A 432 GINVSSINLSNN-QISKFPKEL-----FSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT-K 502 (636)
T ss_dssp CCCEEEEECCSS-CCCSCCTHH-----HHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCC-B
T ss_pred CCCCCEEECcCC-ccCcCCHHH-----HccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCC-c
Confidence 678888888877 333333222 1236788888888753 3322221110 00112338888888884 777 6
Q ss_pred CCC-----CCCCccEEEEecccCcc--cccCCCCccceEEEcCCC------C-eeeecccCCCCCCceEEEcCCCCCccc
Q 044382 411 FPE-----HLPALEMLVIVECNELS--ISIASLPALCKMEIGGCK------K-VVWRSATDHLGSQNSVVCRDTSNQVFL 476 (543)
Q Consensus 411 lp~-----~l~~L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~------~-~~~~~~~~~~~~L~~L~l~~c~~l~~l 476 (543)
+|. .+++|+.|++.++.... ..+..+++|+.|++++|. . ..++..+..+++|++|++++| .++.+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~i 581 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKV 581 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBC
T ss_pred cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCcc
Confidence 663 55678888887764332 244558888999986533 2 236777888899999999996 55888
Q ss_pred CCCcCCCCCCccEEecccCCCCccccccC--ccc---cccCCccceEeeccCCCCc
Q 044382 477 SGPLKPRIPKLEELKINNIQNETCIWKSH--NEL---LQDICSLKRLLITSCPKLQ 527 (543)
Q Consensus 477 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~---l~~l~~L~~L~l~~c~~l~ 527 (543)
|.. +. ++|++|++++| .++++.... |.. ...+...+..++.+||.+.
T Consensus 582 p~~-~~--~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 582 NEK-IT--PNISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CSC-CC--TTCCEEECCSC-TTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CHh-Hh--CcCCEEECcCC-CCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 876 32 78999999985 566553210 111 1122334556788888764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=290.53 Aligned_cols=452 Identities=16% Similarity=0.156 Sum_probs=304.2
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS- 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~- 122 (543)
..++.++++|++++|.+..... .++..+++|++|. +++|.+.+ ..+.+|.++++|++|++++|.++.++..
T Consensus 22 ~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~---Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 22 SGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLI---LKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp SCCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEE---CTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred ccCCCCccEEECcCCccCccCh-hhhhcCCcccEEE---CCCCCcCc----cChhhccccccCCEEECCCCccCccCHHH
Confidence 3566899999999999866543 5566777777775 99998886 2234566999999999999999988664
Q ss_pred ccCcccccEEecCCCCcccc--chhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCccccccccccccc
Q 044382 123 IGDLRYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTC 199 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 199 (543)
|+++++|++|++++|.++.+ |..++.+++|++|++++|..++.+| ..++++++|++|++++|.+.+..|..++.+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 89999999999999999854 6789999999999999987677776 46889999999999999966667888999999
Q ss_pred cccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHH
Q 044382 200 LQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDV 279 (543)
Q Consensus 200 L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (543)
|++|++....... ........++.++ .+.+.......... ........+++|+.|++.++..+ .......
T Consensus 174 L~~L~l~~n~~~~-~~~~~~~~l~~L~-~L~L~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~l 243 (549)
T 2z81_A 174 IHHLTLHLSESAF-LLEIFADILSSVR-YLELRDTNLARFQF-SPLPVDEVSSPMKKLAFRGSVLT-------DESFNEL 243 (549)
T ss_dssp EEEEEEECSBSTT-HHHHHHHSTTTBS-EEEEESCBCTTCCC-CCCSSCCCCCCCCEEEEESCEEE-------HHHHHHH
T ss_pred CceEecccCcccc-cchhhHhhccccc-EEEccCCccccccc-cccchhhhhhcccceeccccccc-------hhHHHHH
Confidence 9988754433211 0000112234444 34333211111000 00001223445555555444321 0011111
Q ss_pred hc------------------------------ccCCCCCCcEEEEeccCCCCCCCCCCC----CCCCCccEEEeecCCCC
Q 044382 280 LD------------------------------MLKPHKNLEQFGICGYGGTKFPTWLGD----SSFLNLVTLKFEDCGMC 325 (543)
Q Consensus 280 ~~------------------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~ 325 (543)
.. .+..+++++.+.+.++.......+..- ...++|+.|++++|..
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l- 322 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV- 322 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-
Confidence 12 223344555555555433221111000 0135788888888754
Q ss_pred CCCC-CC-CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCccccccccc-CCCCCCCCCCCcccEEeec
Q 044382 326 TALP-SV-GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIP-HGSSQGVERFPKLRELHIL 402 (543)
Q Consensus 326 ~~~~-~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~ 402 (543)
..+| .+ ..+++|++|++++|.....+...... ...+++|++|+++++. ++.+.. ... +..+++|++|+++
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~~~l~~L~~L~Ls 395 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC---KGAWPSLQTLVLSQNH-LRSMQKTGEI---LLTLKNLTSLDIS 395 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC---TTSSTTCCEEECTTSC-CCCHHHHHHH---GGGCTTCCEEECT
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhh---hhccccCcEEEccCCc-ccccccchhh---hhcCCCCCEEECC
Confidence 4565 33 46899999999998533322111111 3458999999999863 433321 011 4679999999999
Q ss_pred cCcCccCCCCC---CCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCC
Q 044382 403 RCSKLQGTFPE---HLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGP 479 (543)
Q Consensus 403 ~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 479 (543)
+| +++ .+|. .+++|++|++.+|.-.......+++|+.|++++|.....+ ..+++|++|++++| .++.+|..
T Consensus 396 ~N-~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~ 469 (549)
T 2z81_A 396 RN-TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTLPDA 469 (549)
T ss_dssp TC-CCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSCCCG
T ss_pred CC-CCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcCCCc
Confidence 95 888 7774 4578999999998744322233579999999999776543 56899999999996 78888864
Q ss_pred cCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccchhh
Q 044382 480 LKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEE 533 (543)
Q Consensus 480 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 533 (543)
..+++|++|++++ ++++.++ |..+..+++|++|++++||-....+..+
T Consensus 470 --~~l~~L~~L~Ls~-N~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 470 --SLFPVLLVMKISR-NQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCPRID 517 (549)
T ss_dssp --GGCTTCCEEECCS-SCCCCCC---TTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred --ccCccCCEEecCC-CccCCcC---HHHHhcCcccCEEEecCCCccCCCccHH
Confidence 5789999999999 5888886 5578999999999999998655555333
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=282.64 Aligned_cols=433 Identities=13% Similarity=0.100 Sum_probs=298.0
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~ 128 (543)
.++++.......... ..++ ..+++| ++++|.+.+ ..+.+|.++++|++|++++|.+..+ |.+|+++++
T Consensus 14 ~~~~~c~~~~l~~iP--~~l~--~~l~~L---~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 14 NKTYNCENLGLNEIP--GTLP--NSTECL---EFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp TTEEECTTSCCSSCC--TTSC--TTCCEE---ECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred CceEECCCCCcccCc--CCCC--CcCcEE---EccCCccCc----CChhHhccCccceEEECCCCccceeChhhccCccc
Confidence 345666655543322 2232 245555 599999986 2234566999999999999999876 678999999
Q ss_pred ccEEecCCCCcccc-chhhhcccccceeecCCCchhhhh-hHHHhhhcccceeecCCCCCccccc-cccccccccccccc
Q 044382 129 LRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCN 205 (543)
Q Consensus 129 L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~ 205 (543)
|++|++++|.++.+ |..++.+++|++|++++|. +..+ +..++++++|++|++++|. +..++ ..+..+++|+.|++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEEC
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEc
Confidence 99999999999977 7789999999999999985 4444 5668899999999999999 55542 34445899999976
Q ss_pred eEecCCCCCChhhhcccccccc-ceecccccCcCCccchhhhccCCcc--------------------------------
Q 044382 206 FVVGKDSGSGLRELKSLIHLQG-TLKISKLENIKDIGDAKEARLDGKK-------------------------------- 252 (543)
Q Consensus 206 ~~~~~~~~~~~~~l~~l~~l~~-~L~~~~l~~~~~~~~~~~~~l~~~~-------------------------------- 252 (543)
..+... ......+..+..++. .+.+..... ....+..+. ..
T Consensus 161 ~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l----~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 161 QNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI----AGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp CSSCCC-EECHHHHHTTTTCCSEEEECTTCCC----CEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred ccCccc-ccChhhhhhhcccceeEEecCCCcc----CccChhHhh-hccccccccCCchhHHHHhhhccccchhheechh
Confidence 544322 122233444444431 122222111 111111111 12
Q ss_pred --------------------ccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCC
Q 044382 253 --------------------NLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFL 312 (543)
Q Consensus 253 --------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 312 (543)
+|++++++++..+.. ....+..+++|+.|+++++....+|..+.. ++
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~--l~ 301 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-----------SSNTFHCFSGLQELDLTATHLSELPSGLVG--LS 301 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC-----------CTTTTTTCTTCSEEECTTSCCSCCCSSCCS--CT
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccCcc-----------CHHHhccccCCCEEeccCCccCCCChhhcc--cc
Confidence 344444444333211 112356678899999998888888877665 88
Q ss_pred CccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCccccccccc-CCCCCCC
Q 044382 313 NLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIP-HGSSQGV 390 (543)
Q Consensus 313 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~ 390 (543)
+|++|++++|......+ .+..+++|++|++++|.....++... ...+++|++|+++++.. ..... ... +
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~l~~L~~L~l~~n~l-~~~~~~~~~---~ 372 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-----LENLENLRELDLSHDDI-ETSDCCNLQ---L 372 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST-----TTTCTTCCEEECCSSCC-CEEEESTTT---T
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh-----hhccCcCCEEECCCCcc-ccccCcchh---c
Confidence 89999999886655444 67788999999998885443333222 34588999999988643 33221 112 5
Q ss_pred CCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCccc----ccCCCCccceEEEcCCCCee-eecccCCCCCC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSI----SIASLPALCKMEIGGCKKVV-WRSATDHLGSQ 462 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~----~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L 462 (543)
..+++|++|++++| .+++..|. .+++|++|++.++..... .+..+++|+.|++++|.... .+..+..+++|
T Consensus 373 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 373 RNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred ccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 78999999999995 66645453 467899999988864432 25668999999999998765 45677889999
Q ss_pred ceEEEcCCCCCcc--cC-CCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccc
Q 044382 463 NSVVCRDTSNQVF--LS-GPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 463 ~~L~l~~c~~l~~--l~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 530 (543)
++|++++| .+.. ++ ...+..+++|++|++++| +++.++ |..+..+++|++|++++| +++.++
T Consensus 452 ~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~---~~~~~~l~~L~~L~Ls~N-~l~~~~ 516 (606)
T 3t6q_A 452 QHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID---QHAFTSLKMMNHVDLSHN-RLTSSS 516 (606)
T ss_dssp CEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC---TTTTTTCTTCCEEECCSS-CCCGGG
T ss_pred CEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccC---hhhhccccCCCEEECCCC-ccCcCC
Confidence 99999997 4443 22 244788999999999995 777775 568899999999999998 455443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=281.85 Aligned_cols=439 Identities=14% Similarity=0.050 Sum_probs=253.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDL 126 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l 126 (543)
.++++|+++.|.+..... ..+..+++|+.|. +++|.+.+ +++ ..|.++++|++|++++|.++.. |..+..+
T Consensus 73 ~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~---L~~n~l~~-~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSD-KTFAFCTNLTELH---LMSNSIQK-IKN---NPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCSEEE---CCSSCCCC-CCS---CTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred cCcCEEECCCCccCccCh-hhhccCCCCCEEE---CCCCccCc-cCh---hHccccCCCCEEECCCCcccccCchhhccc
Confidence 567788888777654432 3455556666654 77777664 221 2344777777777777776654 4456777
Q ss_pred ccccEEecCCCCccccchh-hh--cccccceeecCCCchhhhhh------------------------------------
Q 044382 127 RYLRYLNLSGTVIRTLPES-VN--KLYNLHTLLLEGCRRLKKLC------------------------------------ 167 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~-~~--~l~~L~~L~l~~~~~~~~l~------------------------------------ 167 (543)
++|++|++++|.++.++.. +. .+++|++|++++|......|
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 7777777777777666432 22 34667777766653221111
Q ss_pred ---------------HHHhhhcc--cceeecCCCCCccccccccccccccccccceEecCCCCCChhhhcccccccccee
Q 044382 168 ---------------ADMGNLIK--LHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLK 230 (543)
Q Consensus 168 ---------------~~~~~l~~--L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~ 230 (543)
..+..++. |++|++++|.+....|..++.+++|+.|++..+.... .....+..+..++ .+.
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~-~L~ 302 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVR-YLN 302 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE-ECTTTTTTCTTCC-EEE
T ss_pred cEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc-cChhhhcCCCCcc-EEe
Confidence 22223322 5555555555222223445555555555443222111 1111222333333 333
Q ss_pred cccccCcC-----CccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEe----------
Q 044382 231 ISKLENIK-----DIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGIC---------- 295 (543)
Q Consensus 231 ~~~l~~~~-----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~---------- 295 (543)
+....... .........+..+++|++|++++|.....++ ..+..+++|++|+++
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-----------NMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT-----------TTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh-----------hHhccccCCcEEECCCCchhhhhcc
Confidence 32110000 0001111135566677777776665433221 123334444444444
Q ss_pred ------------------ccCCCCCC-CCCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeeeCcc
Q 044382 296 ------------------GYGGTKFP-TWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRLGSK 354 (543)
Q Consensus 296 ------------------~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~ 354 (543)
++....++ ..+. .+++|+.|++++|...+.++ .+..+++|++|++++|. ++.+...
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 448 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRN 448 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTT
T ss_pred hhhhcccccCcCceEECCCCCCCeEChhhhh--CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChh
Confidence 44333221 1222 25555666665554433333 34555666666665553 2222211
Q ss_pred ccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC---CCCCCccEEEEecccCccc
Q 044382 355 FYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP---EHLPALEMLVIVECNELSI 431 (543)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~~ 431 (543)
. ...+++|+.|++.++.. .... ..+..+..+++|++|++++| ++++..+ ..+++|++|++.++.-...
T Consensus 449 ~-----~~~~~~L~~L~l~~n~l-~~~~--~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 449 S-----FALVPSLQRLMLRRVAL-KNVD--SSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp T-----TTTCTTCCEEECTTSCC-BCTT--CSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred h-----hhcCcccccchhccccc-cccc--cCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCcccc
Confidence 1 23467777777776432 2111 11122678999999999994 7873333 3467899999998864432
Q ss_pred -----------ccCCCCccceEEEcCCCCeeeec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCc
Q 044382 432 -----------SIASLPALCKMEIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNET 499 (543)
Q Consensus 432 -----------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~ 499 (543)
.+..+++|+.|++++|....++. .+..+++|++|++++ +.++.+|...+..+++|++|++++ ++++
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~ 597 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLIT 597 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCC
Confidence 25668999999999998887765 578899999999999 588999998889999999999999 5899
Q ss_pred cccccCccccc-cCCccceEeeccCC
Q 044382 500 CIWKSHNELLQ-DICSLKRLLITSCP 524 (543)
Q Consensus 500 ~l~~~~~~~l~-~l~~L~~L~l~~c~ 524 (543)
.++ +..+. .+++|++|+++++|
T Consensus 598 ~~~---~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 598 SVE---KKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp BCC---HHHHHHHHTTCSEEECTTCC
T ss_pred ccC---hhHhcccccccCEEEccCCC
Confidence 886 44566 68999999999854
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.7e-31 Score=272.19 Aligned_cols=434 Identities=14% Similarity=0.120 Sum_probs=292.5
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccc
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSI 123 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~ 123 (543)
..++.++++|+++.|.+..... .++..+++|++|. +++|.+.+ ..+..|.++++|++|++++|.++.+|..
T Consensus 17 ~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~---Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 17 KDLSQKTTILNISQNYISELWT-SDILSLSKLRILI---ISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp CSCCTTCSEEECCSSCCCCCCH-HHHTTCTTCCEEE---CCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccccccEEECCCCcccccCh-hhccccccccEEe---cCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc-
Confidence 4556889999999998876653 5677777777775 89998886 3344566899999999999999988876
Q ss_pred cCcccccEEecCCCCccc--cchhhhcccccceeecCCCchhhhhhHHHhhhccc--ceeecCCCCC--ccccccccccc
Q 044382 124 GDLRYLRYLNLSGTVIRT--LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL--HHLNDSNTDS--LEEMPLGIGKL 197 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L--~~L~l~~~~~--~~~lp~~l~~l 197 (543)
.+++|++|++++|.++. +|..++.+++|++|++++|. +.. ..+..+++| ++|++++|.+ ....|..+..+
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccc
Confidence 89999999999999886 47889999999999999974 333 346778888 9999999985 45566666665
Q ss_pred cccccccceEecC--CCCCChhhhccccccccceeccccc---CcCCccchhhhccCCccccceeeeeeecCCCCCCCcc
Q 044382 198 TCLQTLCNFVVGK--DSGSGLRELKSLIHLQGTLKISKLE---NIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTE 272 (543)
Q Consensus 198 ~~L~~L~~~~~~~--~~~~~~~~l~~l~~l~~~L~~~~l~---~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 272 (543)
.. +.+.+..... ........+..+..++ .+.+.... .........+ .+..+++|+.|++..+... .
T Consensus 164 ~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~------~ 234 (520)
T 2z7x_B 164 NT-ESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT------W 234 (520)
T ss_dssp CE-EEEEEECCSSSCCCCCCCCCCTTCSEEE-ECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE------H
T ss_pred cc-ceEEEEeccCcchhhhhhhhhhccccee-eccccccccccccceeecchh-hhccccchhhccccccccC------H
Confidence 53 2332211111 1111111122333333 23222211 0011122222 4778889999999877641 0
Q ss_pred cccHHHHhcccCCCCCCcEEEEeccCCC-CCCCCCCC---CCCCCccEEEeecCCCCCCCC--CCCCC---Cccceeeec
Q 044382 273 AETEKDVLDMLKPHKNLEQFGICGYGGT-KFPTWLGD---SSFLNLVTLKFEDCGMCTALP--SVGQL---PSLKHLTVR 343 (543)
Q Consensus 273 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~--~~~~l---~~L~~L~l~ 343 (543)
. ........ ...++|+.|+++++... .+|.++.. ..+++|+.+++++|.. .+| .+..+ ++|+.|+++
T Consensus 235 ~-~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 235 N-SFIRILQL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp H-HHHHHHHH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred H-HHHHHHHH-hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 0 00111111 12468999999988755 66766521 2488899999988866 344 22222 569999998
Q ss_pred CccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC--CCC---CCCCCc
Q 044382 344 GMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG--TFP---EHLPAL 418 (543)
Q Consensus 344 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~lp---~~l~~L 418 (543)
+|.. ..+. . ...+++|++|+++++. +...... .++.+++|++|++++| ++++ .+| ..+++|
T Consensus 311 ~n~l-~~~~--~-----~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 311 GTRM-VHML--C-----PSKISPFLHLDFSNNL-LTDTVFE----NCGHLTELETLILQMN-QLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp SSCC-CCCC--C-----CSSCCCCCEEECCSSC-CCTTTTT----TCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTC
T ss_pred CCcc-cccc--c-----hhhCCcccEEEeECCc-cChhhhh----hhccCCCCCEEEccCC-ccCccccchHHHhhCCCC
Confidence 8842 2211 0 2458899999999864 3332211 2578999999999995 6763 233 468899
Q ss_pred cEEEEecccCcc-c---ccCCCCccceEEEcCCCCee-eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecc
Q 044382 419 EMLVIVECNELS-I---SIASLPALCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKIN 493 (543)
Q Consensus 419 ~~L~l~~~~~l~-~---~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~ 493 (543)
++|++.++.... . .+..+++|+.|++++|.... .+..+ .++|++|++++| .++.+|...+ .+++|++|+++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N-~l~~ip~~~~-~l~~L~~L~L~ 452 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN-KIKSIPKQVV-KLEALQELNVA 452 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC--CTTCCEEECCSS-CCCCCCGGGG-GCTTCCEEECC
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh--cccCCEEECCCC-cccccchhhh-cCCCCCEEECC
Confidence 999999886543 2 24557899999999998743 33333 279999999996 7888888744 89999999999
Q ss_pred cCCCCccccccCccccccCCccceEeeccCCC
Q 044382 494 NIQNETCIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 494 ~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
+| +++.++ +..+..+++|++|+++++|-
T Consensus 453 ~N-~l~~l~---~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 453 SN-QLKSVP---DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp SS-CCCCCC---TTTTTTCTTCCEEECCSSCB
T ss_pred CC-cCCccC---HHHhccCCcccEEECcCCCC
Confidence 94 788885 22488899999999999854
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=280.57 Aligned_cols=432 Identities=17% Similarity=0.129 Sum_probs=302.9
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-cCcc-
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-LPDS- 122 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~- 122 (543)
.-..++++|+++.|.........++.++++|++|. +++|.+.+ ..+..|.++++|++|+|++|.++. +|..
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~---Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD---LGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE---CTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE---CCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence 34578999999999653333236677777777775 99999886 335566699999999999999885 4554
Q ss_pred -ccCcccccEEecCCCCcccc--chhhhcccccceeecCCCchhhhhhHHHhhh--cccceeecCCCCCccccccccccc
Q 044382 123 -IGDLRYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLKKLCADMGNL--IKLHHLNDSNTDSLEEMPLGIGKL 197 (543)
Q Consensus 123 -~~~l~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~~lp~~l~~l 197 (543)
|+++++|++|+|++|.++.+ +..++++++|++|++++|......+..+..+ ++|+.|++++|.+....|..++.+
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence 89999999999999999876 3578999999999999986555556667776 899999999999666677666666
Q ss_pred cc------cccccceEecCCCC--CChhh---------------------------------hccc--cccccceecccc
Q 044382 198 TC------LQTLCNFVVGKDSG--SGLRE---------------------------------LKSL--IHLQGTLKISKL 234 (543)
Q Consensus 198 ~~------L~~L~~~~~~~~~~--~~~~~---------------------------------l~~l--~~l~~~L~~~~l 234 (543)
.+ |+.|++..+..... ..+.. +..+ ..++ .+.+..
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~-~L~Ls~- 275 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR-HLDLSH- 275 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC-EEECTT-
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc-EEECCC-
Confidence 55 77776544421110 00000 0000 1222 222221
Q ss_pred cCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCC-CCCCCCCCCCC
Q 044382 235 ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF-PTWLGDSSFLN 313 (543)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~ 313 (543)
..........+..+++|+.|++++|..... ....+..+++|+.|++++|....+ +..+.. +++
T Consensus 276 ---n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~ 339 (844)
T 3j0a_A 276 ---GFVFSLNSRVFETLKDLKVLNLAYNKINKI-----------ADEAFYGLDNLQVLNLSYNLLGELYSSNFYG--LPK 339 (844)
T ss_dssp ---CCCCEECSCCSSSCCCCCEEEEESCCCCEE-----------CTTTTTTCSSCCEEEEESCCCSCCCSCSCSS--CTT
T ss_pred ---CcccccChhhhhcCCCCCEEECCCCcCCCC-----------ChHHhcCCCCCCEEECCCCCCCccCHHHhcC--CCC
Confidence 112222334578899999999998876322 123566788999999999987666 344544 889
Q ss_pred ccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc----------------
Q 044382 314 LVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ---------------- 376 (543)
Q Consensus 314 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------- 376 (543)
|+.|++++|......+ .+..+++|++|++++|. ++.+ ..+++|+.|.+.++.
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i----------~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTI----------HFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCC----------SSCCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcc----------cCCCCcchhccCCCCcccccccccccceeec
Confidence 9999999986544333 57889999999999884 3322 124555555555432
Q ss_pred ---cccccccCCCCCCCCCCCcccEEeeccCcCccCC----CCCCCCCccEEEEecccCcc--------cccCCCCccce
Q 044382 377 ---EWEEWIPHGSSQGVERFPKLRELHILRCSKLQGT----FPEHLPALEMLVIVECNELS--------ISIASLPALCK 441 (543)
Q Consensus 377 ---~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----lp~~l~~L~~L~l~~~~~l~--------~~~~~~~~L~~ 441 (543)
.++....... ...+++|++|++++| ++++. .+..+++|+.|++.++.... ..+..+++|+.
T Consensus 409 s~N~l~~l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 409 SENRLENLDILYF---LLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp CSCCCCSSTTHHH---HTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred ccCccccCchhhh---hhcCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 1111111000 247899999999994 67632 23457899999999985431 23556899999
Q ss_pred EEEcCCCCeeee-cccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEee
Q 044382 442 MEIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLI 520 (543)
Q Consensus 442 L~l~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l 520 (543)
|++++|....++ ..+..+++|++|++++| .++.++...+. ++|+.|++++ ++++.+. |.. +.+|+.|++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~-N~l~~~~---~~~---~~~L~~l~l 554 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISR-NQLLAPN---PDV---FVSLSVLDI 554 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEE-ECCCCCC---SCC---CSSCCEEEE
T ss_pred EECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCC-CcCCCCC---hhH---hCCcCEEEe
Confidence 999999776654 45788999999999995 88888887665 8999999999 6888775 333 468999999
Q ss_pred ccCCCC
Q 044382 521 TSCPKL 526 (543)
Q Consensus 521 ~~c~~l 526 (543)
+++|-.
T Consensus 555 ~~Np~~ 560 (844)
T 3j0a_A 555 THNKFI 560 (844)
T ss_dssp EEECCC
T ss_pred cCCCcc
Confidence 986543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=283.72 Aligned_cols=418 Identities=14% Similarity=0.107 Sum_probs=270.9
Q ss_pred EEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-------------cC---------------------cc
Q 044382 77 TFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-------------LP---------------------DS 122 (543)
Q Consensus 77 ~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-------------lp---------------------~~ 122 (543)
.+..++++++.+.| .++++++++++|++|+|++|.+.. +| ..
T Consensus 82 ~V~~L~L~~~~l~g----~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASG----RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEE----EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCC----cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 44455699999998 666788899999999999995410 00 00
Q ss_pred cc-------------------CcccccEEecC--CCCccccchhhhcccccceeecCCCchhhh----------------
Q 044382 123 IG-------------------DLRYLRYLNLS--GTVIRTLPESVNKLYNLHTLLLEGCRRLKK---------------- 165 (543)
Q Consensus 123 ~~-------------------~l~~L~~L~L~--~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~---------------- 165 (543)
+. ....++.+.+. +|.++.+|..++++++|++|++++|...+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 00 00011111111 345555666666666666666666543232
Q ss_pred -hhHHHh--hhcccceeecCCCCCccccccccccccccccccceEecCCCC-CChhhhccc------cccccceeccccc
Q 044382 166 -LCADMG--NLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG-SGLRELKSL------IHLQGTLKISKLE 235 (543)
Q Consensus 166 -l~~~~~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~-~~~~~l~~l------~~l~~~L~~~~l~ 235 (543)
+|..++ ++++|++|++++|.+.+.+|..++++++|+.|++..+....+ .....+..+ +.++ .+.+....
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNN 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCc
Confidence 666655 666666666666665566666666666666665443321111 112222222 4444 44443221
Q ss_pred CcCCccchhhh--ccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCC
Q 044382 236 NIKDIGDAKEA--RLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLN 313 (543)
Q Consensus 236 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 313 (543)
. . .++. .+..+++|++|++++|.... ..+ .+..+++|+.|++++|....+|..+.. +++
T Consensus 317 l----~-~ip~~~~l~~l~~L~~L~L~~N~l~g-----------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~ 377 (636)
T 4eco_A 317 L----K-TFPVETSLQKMKKLGMLECLYNQLEG-----------KLP-AFGSEIKLASLNLAYNQITEIPANFCG--FTE 377 (636)
T ss_dssp C----S-SCCCHHHHTTCTTCCEEECCSCCCEE-----------ECC-CCEEEEEESEEECCSSEEEECCTTSEE--ECT
T ss_pred C----C-ccCchhhhccCCCCCEEeCcCCcCcc-----------chh-hhCCCCCCCEEECCCCccccccHhhhh--hcc
Confidence 1 1 2222 47888999999998887520 111 556678999999999988788877765 778
Q ss_pred -ccEEEeecCCCCCCCC-CCCCC--CccceeeecCccceeeeCccccCC-CCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 314 -LVTLKFEDCGMCTALP-SVGQL--PSLKHLTVRGMSRVNRLGSKFYGD-DSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 314 -L~~L~l~~~~~~~~~~-~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
|++|++++|... .+| .+..+ ++|++|++++|.....++..+... .....+++|++|+++++. +..+.. ..
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-~~-- 452 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPK-EL-- 452 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCT-HH--
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCH-HH--
Confidence 999999999765 666 45544 489999999985433222222100 001246799999999853 332221 11
Q ss_pred CCCCCCcccEEeeccCcCccCCCCCC-CC----------CccEEEEecccCcc--cccC--CCCccceEEEcCCCCeeee
Q 044382 389 GVERFPKLRELHILRCSKLQGTFPEH-LP----------ALEMLVIVECNELS--ISIA--SLPALCKMEIGGCKKVVWR 453 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~lp~~-l~----------~L~~L~l~~~~~l~--~~~~--~~~~L~~L~l~~~~~~~~~ 453 (543)
...+++|++|++++ +.++ .+|.. +. +|+.|++.++.-.. ..+. .+++|+.|++++|....++
T Consensus 453 -~~~l~~L~~L~Ls~-N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip 529 (636)
T 4eco_A 453 -FSTGSPLSSINLMG-NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529 (636)
T ss_dssp -HHTTCCCSEEECCS-SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred -HccCCCCCEEECCC-CCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcC
Confidence 24589999999999 4787 77743 22 89999999885443 2343 6899999999999988888
Q ss_pred cccCCCCCCceEEEcC------CCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCc
Q 044382 454 SATDHLGSQNSVVCRD------TSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQ 527 (543)
Q Consensus 454 ~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~ 527 (543)
..+..+++|++|++++ |.....+|.. +..+++|++|++++| +++.+| ..+. ++|++|++++|+ +.
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N-~l~~ip----~~~~--~~L~~L~Ls~N~-l~ 600 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSN-DIRKVN----EKIT--PNISVLDIKDNP-NI 600 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSS-CCCBCC----SCCC--TTCCEEECCSCT-TC
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCC-cCCccC----HhHh--CcCCEEECcCCC-Cc
Confidence 8888999999999954 4345556665 788999999999995 679994 4444 899999999995 44
Q ss_pred ccchhhhH
Q 044382 528 SLVAEEEK 535 (543)
Q Consensus 528 ~~~~~~~~ 535 (543)
++......
T Consensus 601 ~~~~~~~~ 608 (636)
T 4eco_A 601 SIDLSYVC 608 (636)
T ss_dssp EEECTTTH
T ss_pred cccHHhcc
Confidence 55444333
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-31 Score=282.08 Aligned_cols=417 Identities=13% Similarity=0.037 Sum_probs=264.7
Q ss_pred EEeecccCCCccccccccccccccccCCeeeEEEe-cCCCcccc-Ccc--------------------------------
Q 044382 77 TFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSL-RGYHIYEL-PDS-------------------------------- 122 (543)
Q Consensus 77 ~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~L-s~~~l~~l-p~~-------------------------------- 122 (543)
.+..+++++|.+.| .++++++++++|++|+| ++|.+... |..
T Consensus 324 ~V~~L~Ls~~~L~G----~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 324 RVTGLSLAGFGAKG----RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp CEEEEECTTTCCEE----EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CEEEEECccCCCCC----cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 45555699999998 66778889999999999 66643211 000
Q ss_pred -------------------ccCcccccEEecCC--CCccccchhhhcccccceeecCCCchhh-----------------
Q 044382 123 -------------------IGDLRYLRYLNLSG--TVIRTLPESVNKLYNLHTLLLEGCRRLK----------------- 164 (543)
Q Consensus 123 -------------------~~~l~~L~~L~L~~--~~i~~lp~~~~~l~~L~~L~l~~~~~~~----------------- 164 (543)
......++.+.+.. |.++.+|..++++++|++|++++|...+
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 00111122222222 4444556666666666666666653323
Q ss_pred hhhHHHh--hhcccceeecCCCCCccccccccccccccccccceEecCCCC-CChhhhcccc-------ccccceecccc
Q 044382 165 KLCADMG--NLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG-SGLRELKSLI-------HLQGTLKISKL 234 (543)
Q Consensus 165 ~l~~~~~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~-~~~~~l~~l~-------~l~~~L~~~~l 234 (543)
.+|..++ ++++|++|++++|.+.+.+|..++++++|+.|++..+..... ..+..+..+. .++ .|.+...
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCC
Confidence 1555544 666666666666655555665566666666654433321111 1111122222 333 3333321
Q ss_pred cCcCCccchhhh--ccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCC
Q 044382 235 ENIKDIGDAKEA--RLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFL 312 (543)
Q Consensus 235 ~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 312 (543)
.. . .++. .+..+++|+.|++++|.... +..+..+++|+.|++++|....+|..+.. ++
T Consensus 559 ~L----~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-------------lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~ 618 (876)
T 4ecn_A 559 NL----E-EFPASASLQKMVKLGLLDCVHNKVRH-------------LEAFGTNVKLTDLKLDYNQIEEIPEDFCA--FT 618 (876)
T ss_dssp CC----C-BCCCHHHHTTCTTCCEEECTTSCCCB-------------CCCCCTTSEESEEECCSSCCSCCCTTSCE--EC
T ss_pred cC----C-ccCChhhhhcCCCCCEEECCCCCccc-------------chhhcCCCcceEEECcCCccccchHHHhh--cc
Confidence 11 1 2222 47888999999998887631 12667788999999999998888877765 77
Q ss_pred C-ccEEEeecCCCCCCCC-CCCCCC--ccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 313 N-LVTLKFEDCGMCTALP-SVGQLP--SLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 313 ~-L~~L~l~~~~~~~~~~-~~~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
+ |+.|++++|... .+| .+..++ +|+.|++++|.....++ .+.........++|+.|+++++. +..+.. ..
T Consensus 619 ~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~-~~-- 692 (876)
T 4ecn_A 619 DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNE-IQKFPT-EL-- 692 (876)
T ss_dssp TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSC-CCSCCH-HH--
T ss_pred ccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCc-CCccCH-HH--
Confidence 8 999999998765 666 455544 49999999885332221 11111012235689999999864 332221 11
Q ss_pred CCCCCCcccEEeeccCcCccCCCCCCC-----------CCccEEEEecccCcc--cccC--CCCccceEEEcCCCCeeee
Q 044382 389 GVERFPKLRELHILRCSKLQGTFPEHL-----------PALEMLVIVECNELS--ISIA--SLPALCKMEIGGCKKVVWR 453 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~lp~~l-----------~~L~~L~l~~~~~l~--~~~~--~~~~L~~L~l~~~~~~~~~ 453 (543)
...+++|+.|++++| .++ .+|..+ ++|+.|++.+|.-.. ..+. .+++|+.|+|++|....++
T Consensus 693 -~~~l~~L~~L~Ls~N-~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp 769 (876)
T 4ecn_A 693 -FATGSPISTIILSNN-LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP 769 (876)
T ss_dssp -HHTTCCCSEEECCSC-CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred -HccCCCCCEEECCCC-cCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccc
Confidence 236899999999994 787 777432 289999999885432 2343 6899999999999888888
Q ss_pred cccCCCCCCceEEEcC------CCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCc
Q 044382 454 SATDHLGSQNSVVCRD------TSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQ 527 (543)
Q Consensus 454 ~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~ 527 (543)
..+..+++|++|++++ |.....+|.. +..+++|++|++++| .++.+| ..+. ++|+.|++++|+ +.
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N-~L~~Ip----~~l~--~~L~~LdLs~N~-l~ 840 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSN-DIRKVD----EKLT--PQLYILDIADNP-NI 840 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSS-CCCBCC----SCCC--SSSCEEECCSCT-TC
T ss_pred hhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCC-CCCccC----Hhhc--CCCCEEECCCCC-CC
Confidence 8888999999999987 4334456655 788999999999995 679994 4444 799999999996 55
Q ss_pred ccchhhhHH
Q 044382 528 SLVAEEEKD 536 (543)
Q Consensus 528 ~~~~~~~~~ 536 (543)
.+......+
T Consensus 841 ~i~~~~~~~ 849 (876)
T 4ecn_A 841 SIDVTSVCP 849 (876)
T ss_dssp EEECGGGHH
T ss_pred ccChHHccc
Confidence 555444333
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=269.19 Aligned_cols=459 Identities=17% Similarity=0.124 Sum_probs=282.7
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD- 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~- 121 (543)
+..+|.++++|++++|.+..+.. .+|.++++|++|. +++|.+.+ +++.. |.++++|++|+|++|+++.+|.
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~---Ls~N~i~~-i~~~~---f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLD---LSRCEIQT-IEDGA---YQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE---CTTCCCCE-ECTTT---TTTCTTCCEEECTTCCCCEECGG
T ss_pred CCCCCcCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEE---CCCCcCCC-cChhH---hcCCCCCCEEEccCCcCCCCCHH
Confidence 45688899999999999977655 6677788888775 99999885 44444 4499999999999999999875
Q ss_pred cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCccccccccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTC 199 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 199 (543)
+|.++++|++|++++|.++.+|. .++.+++|++|++++|.... .+|..++.+++|++|++++|.+.+..|..+..+.+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 58999999999999999999965 58999999999999985332 35677889999999999999943334455665555
Q ss_pred cccccceEecCC------CCCCh---------------------hhhcccccccc-ceecccccCcCCccchhhhccCCc
Q 044382 200 LQTLCNFVVGKD------SGSGL---------------------RELKSLIHLQG-TLKISKLENIKDIGDAKEARLDGK 251 (543)
Q Consensus 200 L~~L~~~~~~~~------~~~~~---------------------~~l~~l~~l~~-~L~~~~l~~~~~~~~~~~~~l~~~ 251 (543)
++.+.....-.. ..... ..+..+..++. .+..................+...
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 543321111000 00000 00111111110 011000001011111111112222
Q ss_pred cccceeeeeeecCCCCCCCccc--------------ccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEE
Q 044382 252 KNLKELSLNWTCSTDGLSSTEA--------------ETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTL 317 (543)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 317 (543)
..+....+..+........... .........+....+++.|.+.++....++.. .++.|+.+
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l 354 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRL 354 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC----BCTTCCEE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc----cchhhhhc
Confidence 3333333322211000000000 00001112234455677777776654443322 24556666
Q ss_pred EeecCCCCCCCCCCCCCCccceeeecCccceeee--CccccC-----------------CCCCCCCCCcCeeeccCcccc
Q 044382 318 KFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRL--GSKFYG-----------------DDSPIPFPCLETLRFEDLQEW 378 (543)
Q Consensus 318 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~-----------------~~~~~~~~~L~~L~l~~~~~l 378 (543)
.+.++... ..+....+++|+.++++++...... ...... ......+++|+.+++..+...
T Consensus 355 ~l~~n~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 355 TFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEESCCSC-CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred ccccccCC-CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 66655432 2223345666666666655321110 000000 001234667777777665433
Q ss_pred cccccCCCCCCCCCCCcccEEeeccCcCccCCCC---CCCCCccEEEEecccCcc----cccCCCCccceEEEcCCCCee
Q 044382 379 EEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP---EHLPALEMLVIVECNELS----ISIASLPALCKMEIGGCKKVV 451 (543)
Q Consensus 379 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~~ 451 (543)
.... ... +..+++++.++++.+ .+++..+ ..+++++.|++.++.... ..+..+++|+.|+|++|....
T Consensus 434 ~~~~-~~~---~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 434 QMSE-FSV---FLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp STTS-SCT---TTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred cccc-ccc---ccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 2222 112 467888899999884 6664444 456789999998886443 345668999999999998876
Q ss_pred e-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccC-CccceEeeccCC
Q 044382 452 W-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI-CSLKRLLITSCP 524 (543)
Q Consensus 452 ~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l-~~L~~L~l~~c~ 524 (543)
+ +..+..+++|++|++++| .++.++...+..+++|++|++++ ++++.++ |..+..+ ++|++|+++++|
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~---~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL-NHIMTSK---KQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT-SCCCBCC---SSCTTCCCTTCCEEECTTCC
T ss_pred cChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC-CcCCCCC---HHHHHhhhCcCCEEEeeCCC
Confidence 5 567888999999999995 88888887789999999999999 6888886 5578877 689999998753
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=268.99 Aligned_cols=406 Identities=18% Similarity=0.147 Sum_probs=292.8
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-ccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~ 124 (543)
-..++++|+++.|.+..... ..+.++++|++|. +++|.+.+ ++ +..|.++++|++|++++|.++.++. .++
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~---L~~n~l~~-~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 121 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLI---LTGNPIQS-LA---LGAFSGLSSLQKLVAVETNLASLENFPIG 121 (570)
T ss_dssp TCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEE---CTTCCCCE-EC---TTTTTTCTTCCEEECTTSCCCCSTTCSCT
T ss_pred CCCCceEEECCCCcCCccCc-ccccCchhCCEEe---CcCCcCCc-cC---HhhhcCccccccccccccccccCCCcccc
Confidence 45789999999998866543 5677777888775 99998885 22 2355699999999999999998865 689
Q ss_pred CcccccEEecCCCCccc--cchhhhcccccceeecCCCchhhhhhHHHhhhccc----ceeecCCCCCcccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIRT--LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL----HHLNDSNTDSLEEMPLGIGKLT 198 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L----~~L~l~~~~~~~~lp~~l~~l~ 198 (543)
.+++|++|++++|.++. +|..++++++|++|++++|......+..++.+++| +.|++++|. +..++.+.....
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~ 200 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEI 200 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTC
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCHHHhccC
Confidence 99999999999999985 68999999999999999985444445668888888 899999998 555544322222
Q ss_pred ccccccceEecC---------------------------------CC------------------------CCChhhhcc
Q 044382 199 CLQTLCNFVVGK---------------------------------DS------------------------GSGLRELKS 221 (543)
Q Consensus 199 ~L~~L~~~~~~~---------------------------------~~------------------------~~~~~~l~~ 221 (543)
+|+.|++..... .. ......+..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 555553221100 00 001111222
Q ss_pred ccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCC
Q 044382 222 LIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTK 301 (543)
Q Consensus 222 l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 301 (543)
++.++ .+.+..... ...+..+..+ +|++|+++++.....+ ...+++|+.|.+.++....
T Consensus 281 l~~L~-~L~l~~~~l-----~~l~~~~~~~-~L~~L~l~~n~~~~l~--------------~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 281 LTNVS-SFSLVSVTI-----ERVKDFSYNF-GWQHLELVNCKFGQFP--------------TLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp GTTCS-EEEEESCEE-----CSCCBCCSCC-CCSEEEEESCBCSSCC--------------BCBCSSCCEEEEESCBSCC
T ss_pred cCccc-EEEecCccc-----hhhhhhhccC-CccEEeeccCcccccC--------------cccccccCEEeCcCCcccc
Confidence 33333 333322111 1223336666 9999999988864222 1357899999999987544
Q ss_pred CCCCCCCCCCCCccEEEeecCCCCCCC--C-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccc
Q 044382 302 FPTWLGDSSFLNLVTLKFEDCGMCTAL--P-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEW 378 (543)
Q Consensus 302 ~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 378 (543)
.... ..+++|++|++++|...... + .+..+++|++|++++|. ++.+...+ ..+++|++|++.++. +
T Consensus 340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~------~~l~~L~~L~l~~n~-l 408 (570)
T 2z63_A 340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF------LGLEQLEHLDFQHSN-L 408 (570)
T ss_dssp BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEE------ETCTTCCEEECTTSE-E
T ss_pred cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccc------cccCCCCEEEccCCc-c
Confidence 3322 35899999999998654332 2 56789999999999984 44444333 348999999999864 3
Q ss_pred cccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCc----ccccCCCCccceEEEcCCCCee
Q 044382 379 EEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNEL----SISIASLPALCKMEIGGCKKVV 451 (543)
Q Consensus 379 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l----~~~~~~~~~L~~L~l~~~~~~~ 451 (543)
........ +..+++|++|++++| .+++..|. .+++|++|++.+|... ...+..+++|+.|++++|....
T Consensus 409 ~~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 409 KQMSEFSV---FLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp ESCTTSCT---TTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred ccccchhh---hhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence 33322222 578999999999996 66645653 5789999999998643 2456679999999999999877
Q ss_pred e-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCC
Q 044382 452 W-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQN 497 (543)
Q Consensus 452 ~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~ 497 (543)
. +..+..+++|++|++++| .++.++...+..+++|++|++++|+-
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 6 678889999999999996 78888877789999999999999643
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=267.38 Aligned_cols=438 Identities=15% Similarity=0.110 Sum_probs=305.6
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~ 128 (543)
-+++++++|.+..+. ..+. +++++| ++++|.+.+ ..+..|.++++|++|++++|.++.+ |..|+.+++
T Consensus 2 ~~~l~ls~n~l~~ip--~~~~--~~L~~L---~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVP--KDLS--QKTTIL---NISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CCEEECTTSCCSSCC--CSCC--TTCSEE---ECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred cceEecCCCCccccc--cccc--ccccEE---ECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence 368899999886543 2222 566666 499999886 2234566899999999999999977 678999999
Q ss_pred ccEEecCCCCccccchhhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCcccccccccccccc--ccccc
Q 044382 129 LRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL--QTLCN 205 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L--~~L~~ 205 (543)
|++|++++|.++++|.. .+++|++|++++|.... .+|..++++++|++|++++|. +.. ..++.+++| +.|++
T Consensus 71 L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 71 LEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEE
T ss_pred CCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEe
Confidence 99999999999999877 89999999999985443 367789999999999999999 443 346677777 88876
Q ss_pred eEecCC-CCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccC
Q 044382 206 FVVGKD-SGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLK 284 (543)
Q Consensus 206 ~~~~~~-~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 284 (543)
..+... .......+..+.. + .+.+ .+.............+..+++|+.+++++|.... ... .....+..+.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~-~-~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~-~~~~~~~~l~ 217 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNT-E-SLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN----KCS-YFLSILAKLQ 217 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCE-E-EEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT----TTH-HHHHHHHGGG
T ss_pred eccccccccccccccccccc-c-eEEE-EeccCcchhhhhhhhhhcccceeecccccccccc----ccc-eeecchhhhc
Confidence 655431 1222333444332 1 1222 1111111122223346788999999998875210 001 1122344778
Q ss_pred CCCCCcEEEEeccCCCCC--CCCCCCCCCCCccEEEeecCCCCCCCC-CC-----CCCCccceeeecCccceeeeCcccc
Q 044382 285 PHKNLEQFGICGYGGTKF--PTWLGDSSFLNLVTLKFEDCGMCTALP-SV-----GQLPSLKHLTVRGMSRVNRLGSKFY 356 (543)
Q Consensus 285 ~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~-----~~l~~L~~L~l~~~~~l~~~~~~~~ 356 (543)
.+++|+.|.+.++..... .........++|++|++++|...+.+| .+ +.+++|+.++++++.. .++....
T Consensus 218 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~ 295 (520)
T 2z7x_B 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI 295 (520)
T ss_dssp GCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred cccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence 899999999988754210 000000013589999999997765666 55 8899999999988743 2221110
Q ss_pred CCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC---CCCCCccEEEEecccCcc---
Q 044382 357 GDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP---EHLPALEMLVIVECNELS--- 430 (543)
Q Consensus 357 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~--- 430 (543)
.. ...-++|+.|+++++.. ..... ...+++|++|++++| .+++.+| ..+++|++|++.+|....
T Consensus 296 ~~--~~~~~~L~~L~l~~n~l-~~~~~------~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 296 YE--IFSNMNIKNFTVSGTRM-VHMLC------PSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp HH--HHHTCCCSEEEEESSCC-CCCCC------CSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred hc--ccccCceeEEEcCCCcc-ccccc------hhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 00 00125699999998642 22211 258999999999995 7876566 357789999999886553
Q ss_pred --cccCCCCccceEEEcCCCCee-eec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCc
Q 044382 431 --ISIASLPALCKMEIGGCKKVV-WRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHN 506 (543)
Q Consensus 431 --~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 506 (543)
..+..+++|+.|++++|.... ++. .+..+++|++|++++|..-..++.. +. ++|++|++++| +++.+ |
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N-~l~~i----p 437 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSN-KIKSI----P 437 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSS-CCCCC----C
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCC-ccccc----c
Confidence 236779999999999999876 665 4777899999999997443444443 22 79999999995 89988 5
Q ss_pred cccccCCccceEeeccCCCCcccchh
Q 044382 507 ELLQDICSLKRLLITSCPKLQSLVAE 532 (543)
Q Consensus 507 ~~l~~l~~L~~L~l~~c~~l~~~~~~ 532 (543)
..+..+++|++|++++| +++.+|..
T Consensus 438 ~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 438 KQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp GGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred hhhhcCCCCCEEECCCC-cCCccCHH
Confidence 56779999999999999 78888764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=265.63 Aligned_cols=420 Identities=18% Similarity=0.158 Sum_probs=265.6
Q ss_pred CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccchh-hhccc
Q 044382 73 QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPES-VNKLY 150 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~ 150 (543)
+.+++| ++++|.+.+ ..+..|.++++|++|++++|.++.++ ..|+.+++|++|++++|.++.+|.. ++.++
T Consensus 26 ~~L~~L---~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSL---DLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEE---ECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEE---ECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 455555 488888775 22334558888888888888888764 5688888888999888888877554 88888
Q ss_pred ccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCccccc-cccccccccccccceEecCCCCCChhhhccccccccc
Q 044382 151 NLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGT 228 (543)
Q Consensus 151 ~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~ 228 (543)
+|++|++++|.... ..|..++++++|++|++++|..++.+| ..++.+++|++|++..+... ......+..++.++ .
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~-~ 176 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIH-H 176 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCSEEE-E
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-ccChhhhhccccCc-e
Confidence 88888888874332 345567888888888888887666676 46888888888876544332 11223334444444 3
Q ss_pred eecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCC-----CC
Q 044382 229 LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTK-----FP 303 (543)
Q Consensus 229 L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~ 303 (543)
+.+..... .......+..+++|++|++++|.....+.. .......+++|+.|.++++.... ++
T Consensus 177 L~l~~n~~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 177 LTLHLSES----AFLLEIFADILSSVRYLELRDTNLARFQFS--------PLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp EEEECSBS----TTHHHHHHHSTTTBSEEEEESCBCTTCCCC--------CCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred EecccCcc----cccchhhHhhcccccEEEccCCcccccccc--------ccchhhhhhcccceeccccccchhHHHHHH
Confidence 43322111 111111134567777777777765332110 00112335677777777664321 11
Q ss_pred CCCCCCCCCCccEEEeecCCCCC--CC-----CCCCCCCccceeeecCccceeeeCccccCCC-CCCCCCCcCeeeccCc
Q 044382 304 TWLGDSSFLNLVTLKFEDCGMCT--AL-----PSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD-SPIPFPCLETLRFEDL 375 (543)
Q Consensus 304 ~~~~~~~l~~L~~L~l~~~~~~~--~~-----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~ 375 (543)
..+. .+++|+.+++.+|...+ .+ ..+..+++|+.+.+.++..- ... .+.... ....+++|++|++.++
T Consensus 245 ~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 245 KLLR--YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFY-LFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp GGGG--GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS-CGG-GSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHhh--hhccccccccccccccccccccccchhhhhhhcccccccccccccc-hhh-hcccchhhhhhcccceEEEeccC
Confidence 1112 25677778887775422 11 13456777888888766311 110 000000 0112467888888875
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC------CCCCCccEEEEecccCcc-----cccCCCCccceEEE
Q 044382 376 QEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP------EHLPALEMLVIVECNELS-----ISIASLPALCKMEI 444 (543)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp------~~l~~L~~L~l~~~~~l~-----~~~~~~~~L~~L~l 444 (543)
. ++.+... . ...+++|++|++++| .+++.+| ..+++|++|++.+|.-.. ..+..+++|++|++
T Consensus 321 ~-l~~ip~~-~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 321 K-VFLVPCS-F---SQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp C-CCCCCHH-H---HHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred c-cccCCHH-H---HhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence 3 3322211 1 136899999999995 6664432 467899999999986533 23667999999999
Q ss_pred cCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcC-----------------CCCCCccEEecccCCCCccccccCcc
Q 044382 445 GGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLK-----------------PRIPKLEELKINNIQNETCIWKSHNE 507 (543)
Q Consensus 445 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----------------~~~~~L~~L~l~~c~~l~~l~~~~~~ 507 (543)
++|....++..+..+++|++|++++| .++.++.... ..+++|++|++++ ++++.++ .
T Consensus 395 s~N~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~-N~l~~ip----~ 468 (549)
T 2z81_A 395 SRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR-NKLKTLP----D 468 (549)
T ss_dssp TTCCCCCCCSCCCCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS-SCCSSCC----C
T ss_pred CCCCCccCChhhcccccccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCC-CccCcCC----C
Confidence 99988888888888999999999996 5766654421 2567777777777 3677773 2
Q ss_pred ccccCCccceEeeccCCCCcccch
Q 044382 508 LLQDICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 508 ~l~~l~~L~~L~l~~c~~l~~~~~ 531 (543)
...+++|++|++++| +++.++.
T Consensus 469 -~~~l~~L~~L~Ls~N-~l~~~~~ 490 (549)
T 2z81_A 469 -ASLFPVLLVMKISRN-QLKSVPD 490 (549)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCCT
T ss_pred -cccCccCCEEecCCC-ccCCcCH
Confidence 345778888888877 5666554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=260.29 Aligned_cols=425 Identities=17% Similarity=0.168 Sum_probs=225.5
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L 129 (543)
++++++++.+..+.. .+ .+++++| ++++|.+.+ + .+..|.++++|++|++++|.++.+ |..|.++++|
T Consensus 34 ~~l~ls~~~L~~ip~--~~--~~~L~~L---~Ls~N~i~~-~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK--DL--PPRTKAL---SLSQNSISE-L---RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp CEEECTTSCCCSCCT--TS--CTTCCEE---ECCSSCCCC-C---CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred cEEEcCCCCCccCCC--CC--CCCcCEE---ECCCCCccc-c---ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 556666555543221 11 1344444 356655553 1 112333566666666666665554 4445666666
Q ss_pred cEEecCCCCccccchhhhcccccceeecCCCchhhhh--hHHHhhhcccceeecCCCCCcccccccccccccc--ccccc
Q 044382 130 RYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKL--CADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL--QTLCN 205 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L--~~L~~ 205 (543)
++|++++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| +.|++
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILL 176 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEe
Confidence 6666666666666554 56666666666653 3332 2445566666666666655 222 123333333 55443
Q ss_pred eEecCC-CCCChhhhcc--------------------------ccccccceecccccCcCCccchhhhccCCccccceee
Q 044382 206 FVVGKD-SGSGLRELKS--------------------------LIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELS 258 (543)
Q Consensus 206 ~~~~~~-~~~~~~~l~~--------------------------l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 258 (543)
..+... .......+.. +..++ .+.+..-.............+..+++|+.++
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEE
Confidence 333220 0111111222 12222 1111110000000001111244455555555
Q ss_pred eeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCC-CCCCCCCC---CCCCCccEEEeecCCCCCCCC--CCC
Q 044382 259 LNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGT-KFPTWLGD---SSFLNLVTLKFEDCGMCTALP--SVG 332 (543)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~--~~~ 332 (543)
+..+... .. ........ ...++|++|+++++... .+|..+.. ..++.|+.+++..+.. .+| .+.
T Consensus 256 L~~~~l~------~~-~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~ 325 (562)
T 3a79_B 256 LQHIETT------WK-CSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY 325 (562)
T ss_dssp EEEEEEC------HH-HHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH
T ss_pred ecCCcCc------HH-HHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh
Confidence 5544431 00 00011111 12347888888887754 56655422 1244444444444332 222 111
Q ss_pred ---CCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC
Q 044382 333 ---QLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG 409 (543)
Q Consensus 333 ---~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 409 (543)
..++|++|++++|.. .... . ...+++|++|+++++. +..... ..++.+++|++|++++ ++++
T Consensus 326 ~~~~~~~L~~L~l~~n~~-~~~~--~-----~~~l~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~L~~-N~l~- 390 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTPF-IHMV--C-----PPSPSSFTFLNFTQNV-FTDSVF----QGCSTLKRLQTLILQR-NGLK- 390 (562)
T ss_dssp HHHHTCCCSEEEEESSCC-CCCC--C-----CSSCCCCCEEECCSSC-CCTTTT----TTCCSCSSCCEEECCS-SCCC-
T ss_pred hhhccCcceEEEccCCCc-cccc--C-----ccCCCCceEEECCCCc-cccchh----hhhcccCCCCEEECCC-CCcC-
Confidence 124578888877742 1111 0 1457888888888853 332211 1146788888888888 4676
Q ss_pred CCC------CCCCCccEEEEecccCcc-c---ccCCCCccceEEEcCCCCee-eecccCCCCCCceEEEcCCCCCcccCC
Q 044382 410 TFP------EHLPALEMLVIVECNELS-I---SIASLPALCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSG 478 (543)
Q Consensus 410 ~lp------~~l~~L~~L~l~~~~~l~-~---~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~ 478 (543)
.++ ..+++|++|++.++.... . .+..+++|+.|++++|.... .+..+ .++|++|++++| .++.+|.
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~~L~~L~L~~N-~l~~ip~ 467 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNN-RIMSIPK 467 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC--CTTCSEEECCSS-CCCCCCT
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh--cCcCCEEECCCC-cCcccCh
Confidence 332 356788888888876443 1 24457889999999887643 22222 168999999995 7888888
Q ss_pred CcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCC
Q 044382 479 PLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKL 526 (543)
Q Consensus 479 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l 526 (543)
..+ .+++|++|++++ ++++.++ +..+..+++|++|+++++|=-
T Consensus 468 ~~~-~l~~L~~L~L~~-N~l~~l~---~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 468 DVT-HLQALQELNVAS-NQLKSVP---DGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTT-SSCCCSEEECCS-SCCCCCC---TTSTTTCTTCCCEECCSCCBC
T ss_pred hhc-CCCCCCEEECCC-CCCCCCC---HHHHhcCCCCCEEEecCCCcC
Confidence 754 889999999999 5788885 224888899999999988643
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=248.33 Aligned_cols=325 Identities=19% Similarity=0.232 Sum_probs=171.6
Q ss_pred cccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhccccee
Q 044382 100 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 179 (543)
+..+++|++|++++|.++.+|. +..+++|++|++++|.++.++. +..+++|++|++++| .+..++. ++.+++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEE
Confidence 3455666666666666665544 5666666666666666665544 566666666666665 3444443 5566666666
Q ss_pred ecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeee
Q 044382 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259 (543)
Q Consensus 180 ~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 259 (543)
++++|. +..++ .++.+++|+.|.+.. .. .... .+..+++|++|++
T Consensus 140 ~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~---~~~~-----------------------------~~~~l~~L~~L~l 184 (466)
T 1o6v_A 140 ELSSNT-ISDIS-ALSGLTSLQQLSFGN-QV---TDLK-----------------------------PLANLTTLERLDI 184 (466)
T ss_dssp EEEEEE-ECCCG-GGTTCTTCSEEEEEE-SC---CCCG-----------------------------GGTTCTTCCEEEC
T ss_pred ECCCCc-cCCCh-hhccCCcccEeecCC-cc---cCch-----------------------------hhccCCCCCEEEC
Confidence 666665 44443 255555555553210 00 0000 0344455555555
Q ss_pred eeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccce
Q 044382 260 NWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 339 (543)
++|.... ...+..+++|++|+++++.....+. +. .+++|+.|++++|.. ..++.+..+++|++
T Consensus 185 ~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~ 247 (466)
T 1o6v_A 185 SSNKVSD-------------ISVLAKLTNLESLIATNNQISDITP-LG--ILTNLDELSLNGNQL-KDIGTLASLTNLTD 247 (466)
T ss_dssp CSSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGG-GG--GCTTCCEEECCSSCC-CCCGGGGGCTTCSE
T ss_pred cCCcCCC-------------ChhhccCCCCCEEEecCCccccccc-cc--ccCCCCEEECCCCCc-ccchhhhcCCCCCE
Confidence 5444321 1123445555555555555443332 22 255566666655533 23344455566666
Q ss_pred eeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC-CCCCCc
Q 044382 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP-EHLPAL 418 (543)
Q Consensus 340 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L 418 (543)
|++++|. ++.... ...+++|++|+++++. +..... ...+++|++|++++| .+++..+ ..+++|
T Consensus 248 L~l~~n~-l~~~~~-------~~~l~~L~~L~l~~n~-l~~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L 311 (466)
T 1o6v_A 248 LDLANNQ-ISNLAP-------LSGLTKLTELKLGANQ-ISNISP------LAGLTALTNLELNEN-QLEDISPISNLKNL 311 (466)
T ss_dssp EECCSSC-CCCCGG-------GTTCTTCSEEECCSSC-CCCCGG------GTTCTTCSEEECCSS-CCSCCGGGGGCTTC
T ss_pred EECCCCc-cccchh-------hhcCCCCCEEECCCCc-cCcccc------ccCCCccCeEEcCCC-cccCchhhcCCCCC
Confidence 6665552 221111 2235556666665532 222111 245666666666663 4442211 344555
Q ss_pred cEEEEecccCccc-ccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCC
Q 044382 419 EMLVIVECNELSI-SIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQN 497 (543)
Q Consensus 419 ~~L~l~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~ 497 (543)
+.|++.+|..... .+..+++|+.|++++|....+ ..+..+++|++|++++| .+..+++ +..+++|++|++++| .
T Consensus 312 ~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n-~ 386 (466)
T 1o6v_A 312 TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ-A 386 (466)
T ss_dssp SEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCE-E
T ss_pred CEEECcCCcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCC-c
Confidence 5555555532221 244577788888888766554 45666888888888886 4454443 567788888888884 5
Q ss_pred Cccc
Q 044382 498 ETCI 501 (543)
Q Consensus 498 l~~l 501 (543)
++.+
T Consensus 387 ~~~~ 390 (466)
T 1o6v_A 387 WTNA 390 (466)
T ss_dssp EECC
T ss_pred ccCC
Confidence 5555
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=253.64 Aligned_cols=409 Identities=16% Similarity=0.089 Sum_probs=278.4
Q ss_pred eecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCcccc-chhhhcccccceee
Q 044382 79 LPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLL 156 (543)
Q Consensus 79 ~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~ 156 (543)
..+++++|.+.+ +|..++ ++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 34 ~~l~ls~~~L~~-ip~~~~------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCCCcc-CCCCCC------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 344699999885 555554 58999999999999886 5799999999999999999988 67799999999999
Q ss_pred cCCCchhhhhhHHHhhhcccceeecCCCCCcccc--ccccccccccccccceEecCCCCCChhhhccccccccceecccc
Q 044382 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEM--PLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKL 234 (543)
Q Consensus 157 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l--p~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l 234 (543)
+++| .+..+|.. .+++|++|++++|. +..+ |..++.+++|+.|++..+.... ..+..+.++ .++ .+.+...
T Consensus 107 Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~-~L~L~~n 179 (562)
T 3a79_B 107 VSHN-RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL-HLS-CILLDLV 179 (562)
T ss_dssp CTTS-CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS-CEE-EEEEEES
T ss_pred CCCC-cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc-eee-EEEeecc
Confidence 9998 56688875 89999999999999 6654 4689999999999876654432 334444444 223 3333221
Q ss_pred cC--cCCcc----------------------chhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCc
Q 044382 235 EN--IKDIG----------------------DAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLE 290 (543)
Q Consensus 235 ~~--~~~~~----------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 290 (543)
.. ..... ......+..+++|+.+++++|... -..-......+...+.++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-------~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN-------CQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT-------HHHHHHHHHHHHSCSSCE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc-------cchHHHHHHHHhccCcce
Confidence 11 00000 001112445677778887765320 001122334556677888
Q ss_pred EEEEeccCCCC-----CCCCCCCCCCCCccEEEeecCCCCCCCC-CC-----CCCCccceeeecCccceeeeCccccCCC
Q 044382 291 QFGICGYGGTK-----FPTWLGDSSFLNLVTLKFEDCGMCTALP-SV-----GQLPSLKHLTVRGMSRVNRLGSKFYGDD 359 (543)
Q Consensus 291 ~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~-----~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 359 (543)
.+.+.++.... ++.+.. .++|++|++++|...+.+| .+ ..++.|+.+++..+.. .++......
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~- 326 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS- 326 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH-
T ss_pred EEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh-
Confidence 88887664321 112221 3489999999997765666 33 4455555554444321 111000000
Q ss_pred CCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCcc-----c
Q 044382 360 SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELS-----I 431 (543)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~-----~ 431 (543)
....++|++|++.++.. ..... ...+++|++|++++| .+++.+|. .+++|++|++.++.-.. .
T Consensus 327 -~~~~~~L~~L~l~~n~~-~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 327 -VFAEMNIKMLSISDTPF-IHMVC------PPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp -HHHTCCCSEEEEESSCC-CCCCC------CSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred -hhccCcceEEEccCCCc-ccccC------ccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence 01125699999998642 22111 257899999999995 78766664 56789999999875443 2
Q ss_pred ccCCCCccceEEEcCCCCee-eec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCcccc
Q 044382 432 SIASLPALCKMEIGGCKKVV-WRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELL 509 (543)
Q Consensus 432 ~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l 509 (543)
.+..+++|+.|++++|.... ++. .+..+++|++|++++|..-..++.. +. ++|++|++++| +++.+ |..+
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N-~l~~i----p~~~ 469 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNN-RIMSI----PKDV 469 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSS-CCCCC----CTTT
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCC-cCccc----Chhh
Confidence 36679999999999999876 554 4778999999999997433334432 22 79999999995 89999 4556
Q ss_pred ccCCccceEeeccCCCCcccchh
Q 044382 510 QDICSLKRLLITSCPKLQSLVAE 532 (543)
Q Consensus 510 ~~l~~L~~L~l~~c~~l~~~~~~ 532 (543)
..+++|++|++++| +++.+|..
T Consensus 470 ~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 470 THLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp TSSCCCSEEECCSS-CCCCCCTT
T ss_pred cCCCCCCEEECCCC-CCCCCCHH
Confidence 68999999999998 68888764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=242.72 Aligned_cols=371 Identities=17% Similarity=0.118 Sum_probs=199.5
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCee-------------eEEEecC
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRL-------------RVFSLRG 113 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L-------------~~L~Ls~ 113 (543)
...+++++++.|.+..+ ..++.++++|+ .+++++|.+.+ .+|..++++.+| ++|++++
T Consensus 10 ~~~L~~L~l~~n~l~~i--P~~i~~L~~L~---~L~l~~n~~~~----~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEM--PVEAENVKSKT---EYYNAWSEWER----NAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp --------------------------CCHH---HHHHHHHHHHH----TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccchhhhcccCchhhC--ChhHhcccchh---hhhccCCcccc----cCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 46788999999887322 13444444444 45688888887 555666667664 9999999
Q ss_pred CCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccc
Q 044382 114 YHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLG 193 (543)
Q Consensus 114 ~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~ 193 (543)
|.++.+|.. .++|++|++++|.++.+|.. +++|++|++++| .+..+|.. .++|++|++++|. +..+| .
T Consensus 81 ~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~ 148 (454)
T 1jl5_A 81 LGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLP-E 148 (454)
T ss_dssp SCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCC-C
T ss_pred CccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCc-c
Confidence 999888763 47899999999999988864 478999999987 45444431 2689999999998 66687 5
Q ss_pred cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCccc
Q 044382 194 IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEA 273 (543)
Q Consensus 194 l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (543)
++.+++|+.|++..+.... ++. ...+|++|++++|..+.
T Consensus 149 ~~~l~~L~~L~l~~N~l~~------lp~----------------------------~~~~L~~L~L~~n~l~~------- 187 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK------LPD----------------------------LPPSLEFIAAGNNQLEE------- 187 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC------CCC----------------------------CCTTCCEEECCSSCCSS-------
T ss_pred cCCCCCCCEEECCCCcCcc------cCC----------------------------CcccccEEECcCCcCCc-------
Confidence 8888888888654332111 000 01256666665555421
Q ss_pred ccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCc
Q 044382 274 ETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGS 353 (543)
Q Consensus 274 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 353 (543)
+..+..+++|+.|++++|....+|.. .++|++|++++|... .++.++.+++|++|++++|. ++.++
T Consensus 188 ------l~~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~-l~~l~- 253 (454)
T 1jl5_A 188 ------LPELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL-LKTLP- 253 (454)
T ss_dssp ------CCCCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC-CSSCC-
T ss_pred ------CccccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc-CCccc-
Confidence 12345566666666666655544432 235666666666443 45556666666666666652 22221
Q ss_pred cccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCccccc
Q 044382 354 KFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISI 433 (543)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~ 433 (543)
..+++|++|+++++. ++.+. ..+++|++|++++| .++ .+|...++|+.|++.++.-.. +
T Consensus 254 --------~~~~~L~~L~l~~N~-l~~l~--------~~~~~L~~L~ls~N-~l~-~l~~~~~~L~~L~l~~N~l~~--i 312 (454)
T 1jl5_A 254 --------DLPPSLEALNVRDNY-LTDLP--------ELPQSLTFLDVSEN-IFS-GLSELPPNLYYLNASSNEIRS--L 312 (454)
T ss_dssp --------SCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCS-EESCCCTTCCEEECCSSCCSE--E
T ss_pred --------ccccccCEEECCCCc-ccccC--------cccCcCCEEECcCC-ccC-cccCcCCcCCEEECcCCcCCc--c
Confidence 123566666666542 22211 12456666666663 555 344333566666666554332 2
Q ss_pred CC-CCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccC
Q 044382 434 AS-LPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 512 (543)
Q Consensus 434 ~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l 512 (543)
+. +++|+.|++++|....++.. +++|++|++++| .++.+|. .+++|++|++++ +.++.++.. |..+..+
T Consensus 313 ~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~-N~l~~l~~i-p~~l~~L 382 (454)
T 1jl5_A 313 CDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPE----LPQNLKQLHVEY-NPLREFPDI-PESVEDL 382 (454)
T ss_dssp CCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCS-SCCSSCCCC-CTTCCEE
T ss_pred cCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccc----hhhhccEEECCC-CCCCcCCCC-hHHHHhh
Confidence 22 24666666666655544333 466666777664 5555554 256666777766 345543322 4455555
Q ss_pred -------------CccceEeeccCC
Q 044382 513 -------------CSLKRLLITSCP 524 (543)
Q Consensus 513 -------------~~L~~L~l~~c~ 524 (543)
++|++|++++++
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ECCC---------------------
T ss_pred hhcccccccccccCcCCEEECCCCc
Confidence 667777776663
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=243.03 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=77.3
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Ccccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~ 124 (543)
++.++++|++++|.+..... ..+.++++|++|. +++|.+.+.++...+. ++++|++|++++|.++.+ |..|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~---L~~n~~~~~i~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNE-TSFSRLQDLQFLK---VEQQTPGLVIRNNTFR---GLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CCTTCCEEECCSSCCCEECT-TTTSSCTTCCEEE---CCCCSTTCEECTTTTT---TCTTCCEEECTTCTTCEECTTTTT
T ss_pred CCCccCEEEecCCccCcCCh-hHhccCccccEEE---CcCCcccceECccccc---ccccCCEEeCCCCccCccChhhcc
Confidence 55666666666666544322 3444455555553 6666555433333333 666666666666666544 45566
Q ss_pred CcccccEEecCCCCccc-cchh--hhcccccceeecCCCchhhhhhHH-HhhhcccceeecCCCCCccccccccc
Q 044382 125 DLRYLRYLNLSGTVIRT-LPES--VNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEMPLGIG 195 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~l~ 195 (543)
++++|++|++++|.++. .|.. +..+++|++|++++|......|.. ++++++|++|++++|.+....|..+.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 66666666666666653 2332 556666666666665332322433 55666666666666663333333343
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=234.04 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=86.4
Q ss_pred cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCC
Q 044382 283 LKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPI 362 (543)
Q Consensus 283 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 362 (543)
+..+++|+.|++++|....+| +. .+++|+.|++++|...+ ++ ++.+++|+.|++++
T Consensus 208 l~~l~~L~~L~Ls~N~l~~ip--~~--~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~------------------ 263 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTEID--VT--PLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQ------------------ 263 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CT--TCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTT------------------
T ss_pred cccCCCCCEEECcCCcccccC--cc--ccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccC------------------
Confidence 334455555555555544443 22 24555555555553322 11 33444555554432
Q ss_pred CCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceE
Q 044382 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKM 442 (543)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 442 (543)
.+|+.|+++++.....+. .+.+++|+.|++++|..+. .+|...++|+.|++.+ .++|+.|
T Consensus 264 --n~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~----------~~~L~~L 323 (457)
T 3bz5_A 264 --TDLLEIDLTHNTQLIYFQ-------AEGCRKIKELDVTHNTQLY-LLDCQAAGITELDLSQ----------NPKLVYL 323 (457)
T ss_dssp --CCCSCCCCTTCTTCCEEE-------CTTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTT----------CTTCCEE
T ss_pred --CCCCEEECCCCccCCccc-------ccccccCCEEECCCCcccc-eeccCCCcceEechhh----------cccCCEE
Confidence 245566666655444332 2568889999999875554 7776666777665443 4678888
Q ss_pred EEcCCCCeeeecccCCCCCCceEEEcCCCCCcc
Q 044382 443 EIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVF 475 (543)
Q Consensus 443 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 475 (543)
++++|....+ .+..+++|++|++++| .++.
T Consensus 324 ~L~~N~l~~l--~l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 324 YLNNTELTEL--DVSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp ECTTCCCSCC--CCTTCTTCSEEECCSS-CCCB
T ss_pred ECCCCccccc--ccccCCcCcEEECCCC-CCCC
Confidence 8888877665 3677888888888884 5554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=232.61 Aligned_cols=347 Identities=19% Similarity=0.211 Sum_probs=239.5
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
..+++.|++..+.+... ..+..+++|++|. +++|.+.+. ++ +.++++|++|++++|.+..++. +.++
T Consensus 45 l~~l~~L~l~~~~i~~l---~~~~~l~~L~~L~---Ls~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI---DGVEYLNNLTQIN---FSNNQLTDI-----TP-LKNLTKLVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCCCC---TTGGGCTTCCEEE---CCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred hccccEEecCCCCCccC---cchhhhcCCCEEE---CCCCccCCc-----hh-hhccccCCEEECCCCccccChh-hcCC
Confidence 36799999999887543 3455677777775 999988852 22 6699999999999999998876 9999
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccce
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 206 (543)
++|++|++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|++|++.+ . ...++. ++.+++|+.|++.
T Consensus 112 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDIS 185 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCC-c-ccCchh-hccCCCCCEEECc
Confidence 999999999999999876 899999999999997 4666664 88999999999964 3 333333 7788888888643
Q ss_pred EecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCC
Q 044382 207 VVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPH 286 (543)
Q Consensus 207 ~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 286 (543)
.+.... +. .+..+++|++|++++|..... ..+..+
T Consensus 186 ~n~l~~---~~-----------------------------~l~~l~~L~~L~l~~n~l~~~-------------~~~~~l 220 (466)
T 1o6v_A 186 SNKVSD---IS-----------------------------VLAKLTNLESLIATNNQISDI-------------TPLGIL 220 (466)
T ss_dssp SSCCCC---CG-----------------------------GGGGCTTCSEEECCSSCCCCC-------------GGGGGC
T ss_pred CCcCCC---Ch-----------------------------hhccCCCCCEEEecCCccccc-------------cccccc
Confidence 322111 01 144556677777766654211 113446
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCC
Q 044382 287 KNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPC 366 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 366 (543)
++|+.|+++++....++. +. .+++|++|++++|.... ++.+..+++|++|++++|. ++.+.. ...+++
T Consensus 221 ~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~l~~ 288 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIGT-LA--SLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQ-ISNISP-------LAGLTA 288 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CCCCGG-------GTTCTT
T ss_pred CCCCEEECCCCCcccchh-hh--cCCCCCEEECCCCcccc-chhhhcCCCCCEEECCCCc-cCcccc-------ccCCCc
Confidence 677777777766555432 22 26677777777765433 3336667777777777763 222221 234677
Q ss_pred cCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC-CCCCCccEEEEecccCcc-cccCCCCccceEEE
Q 044382 367 LETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP-EHLPALEMLVIVECNELS-ISIASLPALCKMEI 444 (543)
Q Consensus 367 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~~l~-~~~~~~~~L~~L~l 444 (543)
|+.|+++++. +..+.. .+.+++|++|++++| .+++..| ..+++|++|++.+|.... ..+..+++|+.|++
T Consensus 289 L~~L~L~~n~-l~~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 289 LTNLELNENQ-LEDISP------ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA 360 (466)
T ss_dssp CSEEECCSSC-CSCCGG------GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred cCeEEcCCCc-ccCchh------hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeC
Confidence 7777777643 333222 356777888888775 5653333 456778888887774332 24566899999999
Q ss_pred cCCCCeeeecccCCCCCCceEEEcCCCCCcccCCC
Q 044382 445 GGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGP 479 (543)
Q Consensus 445 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 479 (543)
++|....... +..+++|++|++++| .++.+|..
T Consensus 361 ~~n~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~~ 393 (466)
T 1o6v_A 361 GHNQISDLTP-LANLTRITQLGLNDQ-AWTNAPVN 393 (466)
T ss_dssp CSSCCCBCGG-GTTCTTCCEEECCCE-EEECCCBC
T ss_pred CCCccCccch-hhcCCCCCEEeccCC-cccCCchh
Confidence 9998876655 788999999999996 56665544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=235.06 Aligned_cols=317 Identities=18% Similarity=0.164 Sum_probs=214.1
Q ss_pred hhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhh
Q 044382 68 DLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVN 147 (543)
Q Consensus 68 ~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~ 147 (543)
.+.++++|++|. +++|.+.+. +.+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++
T Consensus 37 ~~~~l~~L~~L~---Ls~n~l~~~------~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLD---CHNSSITDM------TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EHHHHTTCCEEE---CCSSCCCCC------TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred ChhHcCCCCEEE---ccCCCcccC------hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 344556666664 777777751 24557788888888888877765 777888888888888877775 67
Q ss_pred cccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhcccccccc
Q 044382 148 KLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQG 227 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~ 227 (543)
.+++|++|++++| .+..+| ++.+++|++|++++|. +..++ ++.+++|+.|++..+.
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~------------------ 159 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNK------------------ 159 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCS------------------
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCC------------------
Confidence 7888888888876 444454 6778888888888877 55443 5566666665432110
Q ss_pred ceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCC
Q 044382 228 TLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLG 307 (543)
Q Consensus 228 ~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 307 (543)
..... .+..+++|++|++++|..+.. .+..+++|+.|.++++....++ +.
T Consensus 160 --------~~~~~------~~~~l~~L~~L~ls~n~l~~l--------------~l~~l~~L~~L~l~~N~l~~~~--l~ 209 (457)
T 3bz5_A 160 --------KITKL------DVTPQTQLTTLDCSFNKITEL--------------DVSQNKLLNRLNCDTNNITKLD--LN 209 (457)
T ss_dssp --------CCCCC------CCTTCTTCCEEECCSSCCCCC--------------CCTTCTTCCEEECCSSCCSCCC--CT
T ss_pred --------ccccc------ccccCCcCCEEECCCCcccee--------------ccccCCCCCEEECcCCcCCeec--cc
Confidence 00000 155677888888877765321 1556778888888888766553 33
Q ss_pred CCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCC
Q 044382 308 DSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSS 387 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 387 (543)
.+++|+.|++++|...+ ++ ++.+++|++|++++|. ++.++ ...+++|+.|++..
T Consensus 210 --~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~--------~~~l~~L~~L~l~~------------- 263 (457)
T 3bz5_A 210 --QNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LTELD--------VSTLSKLTTLHCIQ------------- 263 (457)
T ss_dssp --TCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECTT-------------
T ss_pred --cCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc-CCCcC--------HHHCCCCCEEeccC-------------
Confidence 37788888888876544 55 7778888888888773 33222 23466777776543
Q ss_pred CCCCCCCcccEEeeccCcCccCCCC-CCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEE
Q 044382 388 QGVERFPKLRELHILRCSKLQGTFP-EHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVV 466 (543)
Q Consensus 388 ~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 466 (543)
.+|+.|++++|..+ +.+| ..+++|+.|++.+|..+.......++|+.|++++ +++|++|+
T Consensus 264 ------n~L~~L~l~~n~~~-~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~------------~~~L~~L~ 324 (457)
T 3bz5_A 264 ------TDLLEIDLTHNTQL-IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ------------NPKLVYLY 324 (457)
T ss_dssp ------CCCSCCCCTTCTTC-CEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT------------CTTCCEEE
T ss_pred ------CCCCEEECCCCccC-CcccccccccCCEEECCCCcccceeccCCCcceEechhh------------cccCCEEE
Confidence 25677788886433 3555 4567888888888876654444456666665554 47899999
Q ss_pred EcCCCCCcccCCCcCCCCCCccEEecccCCCCccc
Q 044382 467 CRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 467 l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
+++| .++.++ +..+++|+.|++++ ++++.+
T Consensus 325 L~~N-~l~~l~---l~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 325 LNNT-ELTELD---VSHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp CTTC-CCSCCC---CTTCTTCSEEECCS-SCCCBC
T ss_pred CCCC-cccccc---cccCCcCcEEECCC-CCCCCc
Confidence 9995 777774 78899999999999 677765
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=238.03 Aligned_cols=430 Identities=19% Similarity=0.167 Sum_probs=268.6
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccch-hhhcccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYN 151 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~ 151 (543)
.+++| ++++|.+.+ +++. +|.++++|++|+|++|.++.+|+ +|.++++|++|+|++|.++.+|. .+.++++
T Consensus 53 ~~~~L---dLs~N~i~~-l~~~---~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNL---DLSFNPLRH-LGSY---SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEE---ECTTSCCCE-ECTT---TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEE---EeeCCCCCC-CCHH---HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 45665 599999985 3333 45599999999999999998865 69999999999999999999975 5789999
Q ss_pred cceeecCCCchhhhhhH-HHhhhcccceeecCCCCCccc--cccccccccccccccceEecCCC--CCChhhhccccccc
Q 044382 152 LHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEE--MPLGIGKLTCLQTLCNFVVGKDS--GSGLRELKSLIHLQ 226 (543)
Q Consensus 152 L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~--lp~~l~~l~~L~~L~~~~~~~~~--~~~~~~l~~l~~l~ 226 (543)
|++|++++| .+..+|. .++++++|++|++++|. +.. +|..++.+++|++|++..+.... ...+..+.++....
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999998 5666664 48899999999999999 543 56778899999999765443221 12233333322211
Q ss_pred cceecc--cc------------------cCcCCccchhhhccCCccccceeeeeeecCCCCCCCccc---ccH-------
Q 044382 227 GTLKIS--KL------------------ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEA---ETE------- 276 (543)
Q Consensus 227 ~~L~~~--~l------------------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~------- 276 (543)
..+.+. .. .............+..+..++...+..+........... ...
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 011110 00 000001112222345556666666654433211110000 000
Q ss_pred ------------HHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecC
Q 044382 277 ------------KDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRG 344 (543)
Q Consensus 277 ------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 344 (543)
......+....+++.+.+.++....+... . ....++.|++.+|.... ++ ...++.|+.+.+.+
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~--~~~~L~~L~l~~~~~~~-~~-~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF-S--YNFGWQHLELVNCKFGQ-FP-TLKLKSLKRLTFTS 358 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG-G--SCCCCSEEEEESCEESS-CC-CCBCTTCCEEEEES
T ss_pred hhhhhhhhcccccchhhhhhhhccccccccccccccccccc-c--cchhhhhhhcccccccC-cC-cccchhhhhccccc
Confidence 00001122234555555555443333221 1 24567777777764422 22 22456777777766
Q ss_pred ccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccC--------------------CCCCCCCCCCcccEEeeccC
Q 044382 345 MSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPH--------------------GSSQGVERFPKLRELHILRC 404 (543)
Q Consensus 345 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------------------~~~~~~~~~~~L~~L~l~~c 404 (543)
+....... ...+++|+.|+++.+......... ........+++|+.+++.++
T Consensus 359 n~~~~~~~--------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 359 NKGGNAFS--------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp CCSCCBCC--------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTS
T ss_pred ccCCCCcc--------cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhc
Confidence 53221111 234677777777654321100000 00111446677777777775
Q ss_pred cCccCCCC----CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCee--eecccCCCCCCceEEEcCCCCCcc
Q 044382 405 SKLQGTFP----EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKVV--WRSATDHLGSQNSVVCRDTSNQVF 475 (543)
Q Consensus 405 ~~l~~~lp----~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~ 475 (543)
+... ..+ ..+.+++.+++..+.... ..+..+++++.|++++|.... .+..+..+++|++|++++| .++.
T Consensus 431 ~~~~-~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~ 508 (635)
T 4g8a_A 431 NLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ 508 (635)
T ss_dssp EEES-TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCE
T ss_pred cccc-cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCC
Confidence 4333 322 245567777776654332 234458899999999997543 6678889999999999996 8888
Q ss_pred cCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccchh
Q 044382 476 LSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAE 532 (543)
Q Consensus 476 l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 532 (543)
+++..|..+++|++|++++ ++++.++ |..+..+++|++|+++++ +++.++..
T Consensus 509 l~~~~f~~l~~L~~L~Ls~-N~l~~l~---~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 560 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSH-NNFFSLD---TFPYKCLNSLQVLDYSLN-HIMTSKKQ 560 (635)
T ss_dssp ECTTTTTTCTTCCEEECTT-SCCCBCC---CGGGTTCTTCCEEECTTS-CCCBCCSS
T ss_pred cChHHHcCCCCCCEEECCC-CcCCCCC---hhHHhCCCCCCEEECCCC-cCCCCCHH
Confidence 8877799999999999999 5899997 558999999999999998 56665543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=225.76 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=54.0
Q ss_pred CCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCC
Q 044382 434 ASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 513 (543)
Q Consensus 434 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~ 513 (543)
..+++|+.|++++|....+ ..+..+++|++|++++| .++..+...+..+++|++|++++| .++.++ | +..++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~---~--~~~l~ 333 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIR---P--LASLS 333 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCG---G--GGGCT
T ss_pred hcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-cccccc---C--hhhhh
Confidence 3455666666666654444 34556777888888875 455555444677788888888885 466663 2 66778
Q ss_pred ccceEeeccCC
Q 044382 514 SLKRLLITSCP 524 (543)
Q Consensus 514 ~L~~L~l~~c~ 524 (543)
+|++|++++|+
T Consensus 334 ~L~~L~l~~N~ 344 (347)
T 4fmz_A 334 KMDSADFANQV 344 (347)
T ss_dssp TCSEESSSCC-
T ss_pred ccceeehhhhc
Confidence 88888888774
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=222.22 Aligned_cols=302 Identities=15% Similarity=0.154 Sum_probs=152.4
Q ss_pred cCCeeeEEEecCCCccccCcc-ccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhh-hHHHhhhcccce
Q 044382 102 KLQRLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHH 178 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~ 178 (543)
.+.++++|+++++.++.+|.. +..+++|++|++++|.++.++ ..+..+++|++|++++|. +..+ |..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCE
Confidence 345666666666666666544 456666666666666666553 355666666666666653 3333 333556666666
Q ss_pred eecCCCCCccccccc-cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCcccccee
Q 044382 179 LNDSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKEL 257 (543)
Q Consensus 179 L~l~~~~~~~~lp~~-l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L 257 (543)
|++++|. +..+|.. ++.+++|++|++..+.. .......+..+++|++|
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l------------------------------~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNL------------------------------ERIEDDTFQATTSLQNL 170 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC------------------------------CBCCTTTTSSCTTCCEE
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCcc------------------------------CccChhhccCCCCCCEE
Confidence 6666666 5555544 35555555553221100 00001115556677777
Q ss_pred eeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCcc
Q 044382 258 SLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSL 337 (543)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 337 (543)
++++|..+.. .+..+++|+.++++++....++ ..++|++|++++|.... ++. ...++|
T Consensus 171 ~l~~n~l~~~--------------~~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~-~~~-~~~~~L 228 (390)
T 3o6n_A 171 QLSSNRLTHV--------------DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINV-VRG-PVNVEL 228 (390)
T ss_dssp ECCSSCCSBC--------------CGGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCE-EEC-CCCSSC
T ss_pred ECCCCcCCcc--------------ccccccccceeecccccccccC------CCCcceEEECCCCeeee-ccc-cccccc
Confidence 7766654211 1233556666666655443221 13355556665553321 111 123455
Q ss_pred ceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---C
Q 044382 338 KHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---H 414 (543)
Q Consensus 338 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~ 414 (543)
++|++++|. ++.. . . +..+++|++|++++| .+++..|. .
T Consensus 229 ~~L~l~~n~-l~~~------------------------------~---~---l~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 270 (390)
T 3o6n_A 229 TILKLQHNN-LTDT------------------------------A---W---LLNYPGLVEVDLSYN-ELEKIMYHPFVK 270 (390)
T ss_dssp CEEECCSSC-CCCC------------------------------G---G---GGGCTTCSEEECCSS-CCCEEESGGGTT
T ss_pred cEEECCCCC-Cccc------------------------------H---H---HcCCCCccEEECCCC-cCCCcChhHccc
Confidence 555555542 1111 0 0 234455555555552 33322221 1
Q ss_pred CCCccEEEEecccCcc--cccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEec
Q 044382 415 LPALEMLVIVECNELS--ISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKI 492 (543)
Q Consensus 415 l~~L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l 492 (543)
+++|++|++.++.... .....+++|+.|++++|....++..+..+++|++|++++| .++.++ +..+++|++|++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~L~l 346 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTL 346 (390)
T ss_dssp CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEEC
T ss_pred cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC-ccceeC---chhhccCCEEEc
Confidence 2233333333322111 1223466777777777766666666666777777777774 455554 456677777777
Q ss_pred ccCCCCcc
Q 044382 493 NNIQNETC 500 (543)
Q Consensus 493 ~~c~~l~~ 500 (543)
+++ .++.
T Consensus 347 ~~N-~~~~ 353 (390)
T 3o6n_A 347 SHN-DWDC 353 (390)
T ss_dssp CSS-CEEH
T ss_pred CCC-Cccc
Confidence 773 4443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=221.87 Aligned_cols=311 Identities=19% Similarity=0.179 Sum_probs=194.9
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCcccc-chhhhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~ 159 (543)
+++++.+.. +|..+++ .+++|+|++|.++.+ +..|.++++|++|+|++|.++.+ |..+..+++|++|++++
T Consensus 17 ~c~~~~l~~-ip~~~~~------~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 17 LCHRKRFVA-VPEGIPT------ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp ECCSCCCSS-CCSCCCT------TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeCCCCcCc-CCCCCCC------CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 366666653 4444443 677888888887766 45678888888888888887766 66777788888888877
Q ss_pred CchhhhhhHH-HhhhcccceeecCCCCCcccc-ccccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEM-PLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
| .+..+|.. ++++++|++|++++|. +..+ |..
T Consensus 90 n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-------------------------------------------- 123 (477)
T 2id5_A 90 N-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYM-------------------------------------------- 123 (477)
T ss_dssp S-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTT--------------------------------------------
T ss_pred C-cCCccCcccccCCCCCCEEECCCCc-cccCChhH--------------------------------------------
Confidence 6 45555543 5677777777777776 3222 111
Q ss_pred CCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCC-CCCCCCCCccE
Q 044382 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSSFLNLVT 316 (543)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~ 316 (543)
+..+++|++|++++|..... ....+..+++|+.|+++++....++.. +. .+++|+.
T Consensus 124 ----------~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~ 180 (477)
T 2id5_A 124 ----------FQDLYNLKSLEVGDNDLVYI-----------SHRAFSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIV 180 (477)
T ss_dssp ----------TTTCTTCCEEEECCTTCCEE-----------CTTSSTTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCE
T ss_pred ----------ccccccCCEEECCCCcccee-----------ChhhccCCCCCCEEECCCCcCcccChhHhc--ccCCCcE
Confidence 44456666677665554211 123455677888888888776665542 33 3677888
Q ss_pred EEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCc
Q 044382 317 LKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPK 395 (543)
Q Consensus 317 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 395 (543)
|++++|......+ .+..+++|++|++++|..+..+..... ...+|++|++.++ .++.+.... +..+++
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~n-~l~~~~~~~----~~~l~~ 249 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL------YGLNLTSLSITHC-NLTAVPYLA----VRHLVY 249 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT------TTCCCSEEEEESS-CCCSCCHHH----HTTCTT
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc------cCccccEEECcCC-cccccCHHH----hcCccc
Confidence 8888775544333 566777777777777765555443321 1335666666553 222221100 234556
Q ss_pred ccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeee-ecccCCCCCCceEEEcCCCCCc
Q 044382 396 LRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQV 474 (543)
Q Consensus 396 L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~ 474 (543)
|++|++++| .++ .++. ..+..+++|+.|++++|....+ +..+..+++|++|++++| .++
T Consensus 250 L~~L~Ls~n-~l~-~~~~-----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 309 (477)
T 2id5_A 250 LRFLNLSYN-PIS-TIEG-----------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLT 309 (477)
T ss_dssp CCEEECCSS-CCC-EECT-----------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCS
T ss_pred cCeeECCCC-cCC-ccCh-----------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCc
Confidence 666666653 344 2211 1344577788888888877654 556777888888888885 777
Q ss_pred ccCCCcCCCCCCccEEecccCCCCcc
Q 044382 475 FLSGPLKPRIPKLEELKINNIQNETC 500 (543)
Q Consensus 475 ~l~~~~~~~~~~L~~L~l~~c~~l~~ 500 (543)
.++...+..+++|++|+++++ .++.
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N-~l~c 334 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSN-PLAC 334 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSS-CEEC
T ss_pred eeCHhHcCCCcccCEEEccCC-CccC
Confidence 777777778888888888884 4443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=225.66 Aligned_cols=361 Identities=14% Similarity=0.124 Sum_probs=215.9
Q ss_pred CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc-cc-CccccCcccccEEecCCCCcccc-chhhhcc
Q 044382 73 QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-EL-PDSIGDLRYLRYLNLSGTVIRTL-PESVNKL 149 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l 149 (543)
+++++| ++++|.+.+ ..+..|.++++|++|++++|.+. .+ +..|.++++|++|++++|.++.+ |..++.+
T Consensus 30 ~~l~~L---~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYV---DLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEE---ECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEE---EecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 344444 477777664 22334557777777777777765 44 44577777777777777777765 6667777
Q ss_pred cccceeecCCCchhhhhhHH--HhhhcccceeecCCCCCccccccc-cccccccccccceEecCCCCCChhhhccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLCAD--MGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQ 226 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~ 226 (543)
++|++|++++|...+.++.. ++.+++|++|++++|.+....|.. +..+++|+.|++
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L--------------------- 161 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL--------------------- 161 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC---------------------
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC---------------------
Confidence 77777777776444444444 667777777777777733323433 555555555532
Q ss_pred cceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCC--CCCCcEEEEeccCCCCCCC
Q 044382 227 GTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKP--HKNLEQFGICGYGGTKFPT 304 (543)
Q Consensus 227 ~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~ 304 (543)
++|......+ ..+.. ..+++.++++++....++.
T Consensus 162 ---------------------------------~~n~l~~~~~-----------~~l~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 162 ---------------------------------TFNKVKSICE-----------EDLLNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp ---------------------------------TTCCBSCCCT-----------TTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred ---------------------------------CCCcccccCh-----------hhhhccccccccccccccCcccccch
Confidence 2221110000 00000 1233444444444333322
Q ss_pred CCC-------CCCCCCccEEEeecCCCCCCCC-CC---CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeecc
Q 044382 305 WLG-------DSSFLNLVTLKFEDCGMCTALP-SV---GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFE 373 (543)
Q Consensus 305 ~~~-------~~~l~~L~~L~l~~~~~~~~~~-~~---~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 373 (543)
... ...+++|++|++++|...+..+ .+ ...++|+.|++++|....... + ...++.+....+
T Consensus 198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~---~~~~~~~~~~~~- 269 (455)
T 3v47_A 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----G---HTNFKDPDNFTF- 269 (455)
T ss_dssp TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT----T---CCSSCCCCTTTT-
T ss_pred hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc----c---hhhhccCccccc-
Confidence 110 0125688888888886644333 11 224788888888774322110 0 000111000000
Q ss_pred CcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCccc---ccCCCCccceEEEcCC
Q 044382 374 DLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSI---SIASLPALCKMEIGGC 447 (543)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~ 447 (543)
. ....++|++|++++| .+++..|. .+++|++|++.++..... .+..+++|++|++++|
T Consensus 270 ----------~-----~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 270 ----------K-----GLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ----------G-----GGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----------c-----cccccCceEEEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 0 012356666666663 44434442 345666666666543322 4556899999999999
Q ss_pred CCeee-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCC
Q 044382 448 KKVVW-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKL 526 (543)
Q Consensus 448 ~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l 526 (543)
....+ +..+..+++|++|++++| .++.+++..+..+++|++|++++ ++++.++ +..+..+++|++|+++++|--
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLKSVP---DGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCC---TTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCC-CccccCC---HhHhccCCcccEEEccCCCcc
Confidence 88665 567888999999999996 77777666689999999999999 5899986 446788999999999998655
Q ss_pred cccchhhh
Q 044382 527 QSLVAEEE 534 (543)
Q Consensus 527 ~~~~~~~~ 534 (543)
...+....
T Consensus 409 ~~~~~~~~ 416 (455)
T 3v47_A 409 CSCPRIDY 416 (455)
T ss_dssp CCTTTTHH
T ss_pred cCCCcchH
Confidence 55553333
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=216.82 Aligned_cols=82 Identities=11% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCee-eecccCCCCCCceEEEc
Q 044382 390 VERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVV-WRSATDHLGSQNSVVCR 468 (543)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 468 (543)
...+++|++|++++| .++ .++ .+..+++|+.|++++|.... .+..+..+++|++|+++
T Consensus 261 ~~~l~~L~~L~l~~n-~l~-~~~-------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSN-QIS-DIS-------------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp GTTCTTCCEEECCSS-CCC-CCG-------------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred HhcCCCcCEEEccCC-ccC-CCh-------------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 356777888888775 555 222 34456777777887776644 33456678889999999
Q ss_pred CCCCCcccCCCcCCCCCCccEEecccC
Q 044382 469 DTSNQVFLSGPLKPRIPKLEELKINNI 495 (543)
Q Consensus 469 ~c~~l~~l~~~~~~~~~~L~~L~l~~c 495 (543)
+| .++.+++ +..+++|++|++++|
T Consensus 320 ~n-~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 320 QN-HITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp SS-SCCCCGG--GGGCTTCSEESSSCC
T ss_pred CC-ccccccC--hhhhhccceeehhhh
Confidence 86 4666555 677889999999885
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=222.53 Aligned_cols=342 Identities=17% Similarity=0.124 Sum_probs=219.4
Q ss_pred cccCCCccccccccccccccccCCeeeEEEecCCCcc-ccCccccCcccc-------------cEEecCCCCccccchhh
Q 044382 81 VRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIGDLRYL-------------RYLNLSGTVIRTLPESV 146 (543)
Q Consensus 81 ~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~~~~l~~L-------------~~L~L~~~~i~~lp~~~ 146 (543)
+++++|.+ + .+|++++++++|++|++++|.+. .+|.+++++.+| ++|++++|.++.+|..
T Consensus 16 L~l~~n~l-~----~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~- 89 (454)
T 1jl5_A 16 PLRHSSNL-T----EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL- 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC-
T ss_pred hhcccCch-h----hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC-
Confidence 34666666 3 44555556777777777776655 556666666654 6666666666665542
Q ss_pred hcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccc
Q 044382 147 NKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQ 226 (543)
Q Consensus 147 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~ 226 (543)
.++|++|++++| .+..+|.. +++|++|++++|. +..+|... ++|++|+
T Consensus 90 --~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~---------------------- 137 (454)
T 1jl5_A 90 --PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLG---------------------- 137 (454)
T ss_dssp --CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEE----------------------
T ss_pred --cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEE----------------------
Confidence 255666666665 33334432 3566666666665 44333211 2333332
Q ss_pred cceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCC
Q 044382 227 GTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWL 306 (543)
Q Consensus 227 ~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 306 (543)
+.... ... .+ .++.+++|++|++++|..+..+. ..++|++|++++|....+|. +
T Consensus 138 ----L~~n~----l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~---------------~~~~L~~L~L~~n~l~~l~~-~ 191 (454)
T 1jl5_A 138 ----VSNNQ----LEK-LP-ELQNSSFLKIIDVDNNSLKKLPD---------------LPPSLEFIAAGNNQLEELPE-L 191 (454)
T ss_dssp ----CCSSC----CSS-CC-CCTTCTTCCEEECCSSCCSCCCC---------------CCTTCCEEECCSSCCSSCCC-C
T ss_pred ----CcCCC----CCC-Cc-ccCCCCCCCEEECCCCcCcccCC---------------CcccccEEECcCCcCCcCcc-c
Confidence 22111 111 11 27788999999999887643321 13489999999998877773 4
Q ss_pred CCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCC
Q 044382 307 GDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGS 386 (543)
Q Consensus 307 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 386 (543)
. .+++|++|++++|... .++.. .++|++|++++| .++.++ . ...+++|++|+++++ .+..+.
T Consensus 192 ~--~l~~L~~L~l~~N~l~-~l~~~--~~~L~~L~l~~n-~l~~lp-~------~~~l~~L~~L~l~~N-~l~~l~---- 253 (454)
T 1jl5_A 192 Q--NLPFLTAIYADNNSLK-KLPDL--PLSLESIVAGNN-ILEELP-E------LQNLPFLTTIYADNN-LLKTLP---- 253 (454)
T ss_dssp T--TCTTCCEEECCSSCCS-SCCCC--CTTCCEEECCSS-CCSSCC-C------CTTCTTCCEEECCSS-CCSSCC----
T ss_pred c--CCCCCCEEECCCCcCC-cCCCC--cCcccEEECcCC-cCCccc-c------cCCCCCCCEEECCCC-cCCccc----
Confidence 4 4899999999998654 34432 369999999998 444443 1 345899999999985 333221
Q ss_pred CCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEE
Q 044382 387 SQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVV 466 (543)
Q Consensus 387 ~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 466 (543)
..+++|++|++++| .++ .+|..+++|++|++.++.... ....+++|+.|++++|....++.. .++|++|+
T Consensus 254 ----~~~~~L~~L~l~~N-~l~-~l~~~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~ 323 (454)
T 1jl5_A 254 ----DLPPSLEALNVRDN-YLT-DLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSLCDL---PPSLEELN 323 (454)
T ss_dssp ----SCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSEECCC---CTTCCEEE
T ss_pred ----ccccccCEEECCCC-ccc-ccCcccCcCCEEECcCCccCc-ccCcCCcCCEEECcCCcCCcccCC---cCcCCEEE
Confidence 24689999999994 788 688888999999999886443 112357999999999987765432 36999999
Q ss_pred EcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcc
Q 044382 467 CRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQS 528 (543)
Q Consensus 467 l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~ 528 (543)
+++| .++.+|.. +++|++|++++| +++.+ |. .+++|++|++++|+ ++.
T Consensus 324 Ls~N-~l~~lp~~----~~~L~~L~L~~N-~l~~l----p~---~l~~L~~L~L~~N~-l~~ 371 (454)
T 1jl5_A 324 VSNN-KLIELPAL----PPRLERLIASFN-HLAEV----PE---LPQNLKQLHVEYNP-LRE 371 (454)
T ss_dssp CCSS-CCSCCCCC----CTTCCEEECCSS-CCSCC----CC---CCTTCCEEECCSSC-CSS
T ss_pred CCCC-cccccccc----CCcCCEEECCCC-ccccc----cc---hhhhccEEECCCCC-CCc
Confidence 9995 67777753 689999999995 78888 43 47899999999984 444
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=223.30 Aligned_cols=314 Identities=15% Similarity=0.142 Sum_probs=231.0
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~ 128 (543)
.+.++...+.+..+. ..+ .+++++| ++++|.+.+ + .+..|.++++|++|+|++|.++.+ |..|.++++
T Consensus 13 ~~~v~c~~~~l~~ip--~~~--~~~l~~L---~L~~n~l~~-~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 13 DRAVLCHRKRFVAVP--EGI--PTETRLL---DLGKNRIKT-L---NQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp TTEEECCSCCCSSCC--SCC--CTTCSEE---ECCSSCCCE-E---CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCEEEeCCCCcCcCC--CCC--CCCCcEE---ECCCCccce-E---CHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 356777666554332 122 2456666 599999886 2 233555899999999999999977 678999999
Q ss_pred ccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccc-cccccccccccccce
Q 044382 129 LRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCNF 206 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~ 206 (543)
|++|+|++|.++.+|.. +..+++|++|++++|......+..+..+++|++|++++|. +..++ ..
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------------- 147 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRA------------- 147 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTS-------------
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhh-------------
Confidence 99999999999999764 7899999999999986545556678899999999999987 33221 11
Q ss_pred EecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCC
Q 044382 207 VVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPH 286 (543)
Q Consensus 207 ~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 286 (543)
+.++++|++|++++|..+..+ ...+..+
T Consensus 148 -----------------------------------------~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~l 175 (477)
T 2id5_A 148 -----------------------------------------FSGLNSLEQLTLEKCNLTSIP-----------TEALSHL 175 (477)
T ss_dssp -----------------------------------------STTCTTCCEEEEESCCCSSCC-----------HHHHTTC
T ss_pred -----------------------------------------ccCCCCCCEEECCCCcCcccC-----------hhHhccc
Confidence 444567777777777653221 2345678
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCC
Q 044382 287 KNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFP 365 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 365 (543)
++|+.|+++++....++..... .+++|+.|++++|...+.++ ......+|++|++++| .++.++... ...++
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-----~~~l~ 248 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLA-----VRHLV 248 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHH-----HTTCT
T ss_pred CCCcEEeCCCCcCcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHH-----hcCcc
Confidence 9999999999987666543222 48899999999998777666 4555669999999998 454444222 24589
Q ss_pred CcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEc
Q 044382 366 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIG 445 (543)
Q Consensus 366 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 445 (543)
+|+.|+++++. +..+.... +..+++|++|++++| .+++..|. .+..+++|+.|+|+
T Consensus 249 ~L~~L~Ls~n~-l~~~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~------------------~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 249 YLRFLNLSYNP-ISTIEGSM----LHELLRLQEIQLVGG-QLAVVEPY------------------AFRGLNYLRVLNVS 304 (477)
T ss_dssp TCCEEECCSSC-CCEECTTS----CTTCTTCCEEECCSS-CCSEECTT------------------TBTTCTTCCEEECC
T ss_pred ccCeeECCCCc-CCccChhh----ccccccCCEEECCCC-ccceECHH------------------HhcCcccCCEEECC
Confidence 99999999864 44333222 468899999999994 67633343 45568899999999
Q ss_pred CCCCeeeec-ccCCCCCCceEEEcCCC
Q 044382 446 GCKKVVWRS-ATDHLGSQNSVVCRDTS 471 (543)
Q Consensus 446 ~~~~~~~~~-~~~~~~~L~~L~l~~c~ 471 (543)
+|....++. .+..+++|++|++++|+
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCC
Confidence 998876654 56789999999999975
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=228.78 Aligned_cols=306 Identities=14% Similarity=0.120 Sum_probs=161.1
Q ss_pred CCeeeEEEecCCCccccCcc-ccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 103 LQRLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
+.++++|++++|.++.+|.. +..+++|++|+|++|.++.+| ..+..+++|++|++++|......|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34555566666555555443 455556666666666555553 3555566666666665532222223345566666666
Q ss_pred cCCCCCccccccc-cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeee
Q 044382 181 DSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259 (543)
Q Consensus 181 l~~~~~~~~lp~~-l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 259 (543)
+++|. +..+|.. ++.+++|+.|++..+.. ....+..+..+++|++|++
T Consensus 130 L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l------------------------------~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 130 LERND-LSSLPRGIFHNTPKLTTLSMSNNNL------------------------------ERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCC------------------------------CBCCTTTTTTCTTCCEEEC
T ss_pred eeCCC-CCCCCHHHhccCCCCCEEEeeCCcC------------------------------CCCChhhhhcCCcCcEEEC
Confidence 66665 4444443 34555555553211100 0000111455666777777
Q ss_pred eeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccce
Q 044382 260 NWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 339 (543)
++|..+.. .+..+++|+.|+++++....++ ..++|+.|++++|......+. ..++|+.
T Consensus 179 ~~N~l~~~--------------~~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~~--~~~~L~~ 236 (597)
T 3oja_B 179 SSNRLTHV--------------DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRGP--VNVELTI 236 (597)
T ss_dssp TTSCCSBC--------------CGGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEEECS--CCSCCCE
T ss_pred cCCCCCCc--------------ChhhhhhhhhhhcccCcccccc------CCchhheeeccCCcccccccc--cCCCCCE
Confidence 66554211 1333566667776665543321 134566666666543221111 1245666
Q ss_pred eeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCcc
Q 044382 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALE 419 (543)
Q Consensus 340 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~ 419 (543)
|++++|. ++... . ...+++|+.|+++++. +....... ++.+++|++|+|++| .++ .+|
T Consensus 237 L~L~~n~-l~~~~-~------l~~l~~L~~L~Ls~N~-l~~~~~~~----~~~l~~L~~L~Ls~N-~l~-~l~------- 294 (597)
T 3oja_B 237 LKLQHNN-LTDTA-W------LLNYPGLVEVDLSYNE-LEKIMYHP----FVKMQRLERLYISNN-RLV-ALN------- 294 (597)
T ss_dssp EECCSSC-CCCCG-G------GGGCTTCSEEECCSSC-CCEEESGG----GTTCSSCCEEECTTS-CCC-EEE-------
T ss_pred EECCCCC-CCCCh-h------hccCCCCCEEECCCCc-cCCCCHHH----hcCccCCCEEECCCC-CCC-CCC-------
Confidence 6665552 21110 0 2234555555555432 22221111 234555555555552 333 122
Q ss_pred EEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCc
Q 044382 420 MLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNET 499 (543)
Q Consensus 420 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~ 499 (543)
..+..+++|+.|+|++|....++..+..+++|++|++++| .+..++ +..+++|+.|++++| .+.
T Consensus 295 -----------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~L~l~~N-~~~ 358 (597)
T 3oja_B 295 -----------LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHN-DWD 358 (597)
T ss_dssp -----------CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSS-CEE
T ss_pred -----------cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC---hhhcCCCCEEEeeCC-CCC
Confidence 1234478888899998888778777778899999999996 566665 567889999999985 444
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=214.51 Aligned_cols=303 Identities=16% Similarity=0.149 Sum_probs=190.8
Q ss_pred CCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKL 149 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l 149 (543)
+++++.|. +++|.+.. +|..++. .+++|++|++++|.++.++. .|..+++|++|++++|.++.+| ..+..+
T Consensus 44 l~~l~~l~---l~~~~l~~-l~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 44 LNNQKIVT---FKNSTMRK-LPAALLD---SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GCCCSEEE---EESCEESE-ECTHHHH---HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCceEEE---ecCCchhh-CChhHhc---ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 45555554 66666553 3334444 77788888888888776643 6777888888888888877764 446778
Q ss_pred cccceeecCCCchhhhhhHH-HhhhcccceeecCCCCCcccc-ccccccccccccccceEecCCCCCChhhhcccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEM-PLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQG 227 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~ 227 (543)
++|++|++++| .+..+|.. ++.+++|++|++++|. +..+ |..++.+++|+.|++..+....
T Consensus 117 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 179 (390)
T 3o6n_A 117 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--------------- 179 (390)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB---------------
T ss_pred CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc---------------
Confidence 88888888876 45566654 4677888888888877 4444 3457777777777532221100
Q ss_pred ceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCC
Q 044382 228 TLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLG 307 (543)
Q Consensus 228 ~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 307 (543)
+ .+..+++|+.+++++|.. ..+...++|+.|+++++....++..
T Consensus 180 -~-----------------~~~~l~~L~~L~l~~n~l----------------~~~~~~~~L~~L~l~~n~l~~~~~~-- 223 (390)
T 3o6n_A 180 -V-----------------DLSLIPSLFHANVSYNLL----------------STLAIPIAVEELDASHNSINVVRGP-- 223 (390)
T ss_dssp -C-----------------CGGGCTTCSEEECCSSCC----------------SEEECCSSCSEEECCSSCCCEEECC--
T ss_pred -c-----------------ccccccccceeecccccc----------------cccCCCCcceEEECCCCeeeecccc--
Confidence 0 033345666777665543 1223345788888887776655432
Q ss_pred CCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCC
Q 044382 308 DSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSS 387 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 387 (543)
.+++|+.|++++|... ..+.+..+++|++|++++|.........+ ..+++|++|+++++ .++.+...
T Consensus 224 --~~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~--- 290 (390)
T 3o6n_A 224 --VNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNN-RLVALNLY--- 290 (390)
T ss_dssp --CCSSCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECCSS-CCCEEECS---
T ss_pred --ccccccEEECCCCCCc-ccHHHcCCCCccEEECCCCcCCCcChhHc------cccccCCEEECCCC-cCcccCcc---
Confidence 2468888888888553 44667788889999998884332223222 34778888888774 33333221
Q ss_pred CCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEE
Q 044382 388 QGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVC 467 (543)
Q Consensus 388 ~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 467 (543)
...+++|++|++++| .++ .+|. .+..+++|+.|++++|....++ +..+++|++|++
T Consensus 291 --~~~l~~L~~L~L~~n-~l~-~~~~------------------~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 291 --GQPIPTLKVLDLSHN-HLL-HVER------------------NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTL 346 (390)
T ss_dssp --SSCCTTCCEEECCSS-CCC-CCGG------------------GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEEC
T ss_pred --cCCCCCCCEEECCCC-cce-ecCc------------------cccccCcCCEEECCCCccceeC--chhhccCCEEEc
Confidence 346788888888885 666 4442 2233566666666666655443 455777777777
Q ss_pred cCCC
Q 044382 468 RDTS 471 (543)
Q Consensus 468 ~~c~ 471 (543)
++|+
T Consensus 347 ~~N~ 350 (390)
T 3o6n_A 347 SHND 350 (390)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7753
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-24 Score=222.25 Aligned_cols=302 Identities=16% Similarity=0.142 Sum_probs=190.6
Q ss_pred CCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccch-hhhcc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPE-SVNKL 149 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l 149 (543)
+.+++.|. +++|.+.. +|..++. ++++|++|++++|.++.++ ..|+.+++|++|+|++|.++.+|+ .++.+
T Consensus 50 l~~l~~l~---l~~~~l~~-lp~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVT---FKNSTMRK-LPAALLD---SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEE---ESSCEESE-ECTHHHH---HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEE---eeCCCCCC-cCHHHHc---cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 45555554 77776663 4444444 7888888888888888765 468888888888888888887754 46888
Q ss_pred cccceeecCCCchhhhhhHH-HhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGT 228 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~ 228 (543)
++|++|++++| .+..+|.. ++.+++|++|++++|.+.+..|..++.+++|+.|++..+.... +
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~--- 186 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------------V--- 186 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB------------C---
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC------------c---
Confidence 88888888887 45566654 5788888888888888433344567778888877543221100 0
Q ss_pred eecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCC
Q 044382 229 LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGD 308 (543)
Q Consensus 229 L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 308 (543)
.+..+++|+.|++++|.. ..+...++|+.|+++++....++..+
T Consensus 187 ------------------~~~~l~~L~~L~l~~n~l----------------~~l~~~~~L~~L~ls~n~l~~~~~~~-- 230 (597)
T 3oja_B 187 ------------------DLSLIPSLFHANVSYNLL----------------STLAIPIAVEELDASHNSINVVRGPV-- 230 (597)
T ss_dssp ------------------CGGGCTTCSEEECCSSCC----------------SEEECCTTCSEEECCSSCCCEEECSC--
T ss_pred ------------------ChhhhhhhhhhhcccCcc----------------ccccCCchhheeeccCCccccccccc--
Confidence 033345667777766544 22334567788888777765554432
Q ss_pred CCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 309 SSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 309 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
.++|+.|++++|... ..+.+..+++|++|++++|......+..+ ..+++|+.|+++++ .+..+...
T Consensus 231 --~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~l~~~---- 296 (597)
T 3oja_B 231 --NVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNN-RLVALNLY---- 296 (597)
T ss_dssp --CSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECTTS-CCCEEECS----
T ss_pred --CCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCccCCCCHHHh------cCccCCCEEECCCC-CCCCCCcc----
Confidence 357888888887553 34567778888888888874333333232 34788888888874 34433222
Q ss_pred CCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCcccccCCCCccceEEEcCCCC
Q 044382 389 GVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSISIASLPALCKMEIGGCKK 449 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~ 449 (543)
...+++|++|+|++| .++ .+|. .+++|+.|++.+|......+..+++|+.|+|++|+.
T Consensus 297 -~~~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 297 -GQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp -SSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred -cccCCCCcEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 356888888888884 666 5553 234455555544443333333444444555544443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=192.33 Aligned_cols=288 Identities=16% Similarity=0.120 Sum_probs=170.5
Q ss_pred CeeeEEEecCCCccccCccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 104 QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
.++++++++++.++.+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|......|..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 36788888888888888765 36888888888888877 4467888888888888874333336667888888888888
Q ss_pred CCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeee
Q 044382 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262 (543)
Q Consensus 183 ~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (543)
+|. +..+|..+. ++|++| ++++|
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L------------------------------------------------------~l~~n 133 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVEL------------------------------------------------------RIHDN 133 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEE------------------------------------------------------ECCSS
T ss_pred CCc-CCccCcccc--ccCCEE------------------------------------------------------ECCCC
Confidence 887 555554332 333333 22222
Q ss_pred cCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCC---CCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccce
Q 044382 263 CSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGT---KFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339 (543)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 339 (543)
.....+ ...+..+++|+.|+++++... ..+..+.. + +|++|++++|... .++
T Consensus 134 ~i~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l-~L~~L~l~~n~l~-~l~---------- 188 (332)
T 2ft3_A 134 RIRKVP-----------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG--L-KLNYLRISEAKLT-GIP---------- 188 (332)
T ss_dssp CCCCCC-----------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS--C-CCSCCBCCSSBCS-SCC----------
T ss_pred ccCccC-----------HhHhCCCccCCEEECCCCccccCCCCcccccC--C-ccCEEECcCCCCC-ccC----------
Confidence 211000 001122233333333333221 11111221 2 4444444444321 122
Q ss_pred eeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCcc
Q 044382 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALE 419 (543)
Q Consensus 340 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~ 419 (543)
. ..+++|++|+++++ .++...... +..+++|++|++++| .+++..+.
T Consensus 189 -------------~--------~~~~~L~~L~l~~n-~i~~~~~~~----l~~l~~L~~L~L~~N-~l~~~~~~------ 235 (332)
T 2ft3_A 189 -------------K--------DLPETLNELHLDHN-KIQAIELED----LLRYSKLYRLGLGHN-QIRMIENG------ 235 (332)
T ss_dssp -------------S--------SSCSSCSCCBCCSS-CCCCCCTTS----STTCTTCSCCBCCSS-CCCCCCTT------
T ss_pred -------------c--------cccCCCCEEECCCC-cCCccCHHH----hcCCCCCCEEECCCC-cCCcCChh------
Confidence 1 11244555555543 222221111 456778888888884 66622221
Q ss_pred EEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCC------CCCccEEecc
Q 044382 420 MLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPR------IPKLEELKIN 493 (543)
Q Consensus 420 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~------~~~L~~L~l~ 493 (543)
.+..+++|+.|++++|....++..+..+++|++|++++| .++.++...+.. .++|+.|+++
T Consensus 236 ------------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 236 ------------SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp ------------GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred ------------HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee
Confidence 344567888888888877777777888999999999995 788877665544 4679999999
Q ss_pred cCCCCc--cccccCccccccCCccceEeeccCCC
Q 044382 494 NIQNET--CIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 494 ~c~~l~--~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
+++ ++ .+. |..+..+++|+.+++++|.+
T Consensus 303 ~N~-~~~~~~~---~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 303 NNP-VPYWEVQ---PATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp SSS-SCGGGSC---GGGGTTBCCSTTEEC-----
T ss_pred cCc-ccccccC---cccccccchhhhhhcccccC
Confidence 954 55 343 56788899999999988753
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-22 Score=191.61 Aligned_cols=288 Identities=16% Similarity=0.147 Sum_probs=165.1
Q ss_pred CeeeEEEecCCCccccCccccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 104 QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
.++++++++++.++.+|..+. +.|++|++++|.++.+|. .+..+++|++|++++|......|..++.+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 367778888887777776553 577888888888887754 57778888888888764333336667778888888888
Q ss_pred CCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeee
Q 044382 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262 (543)
Q Consensus 183 ~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (543)
+|. +..+|..+. ++|++|+ +++|
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~------------------------------------------------------l~~n 131 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELR------------------------------------------------------VHEN 131 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEE------------------------------------------------------CCSS
T ss_pred CCc-CCccChhhc--ccccEEE------------------------------------------------------CCCC
Confidence 877 555554432 3333332 2111
Q ss_pred cCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCC---CCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccc
Q 044382 263 CSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGT---KFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLK 338 (543)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 338 (543)
..... ....+..+++|+.|+++++... ..+..+.. +++|++|++++|... .++ .+ .++|+
T Consensus 132 ~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l~~L~~L~l~~n~l~-~l~~~~--~~~L~ 195 (330)
T 1xku_A 132 EITKV-----------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MKKLSYIRIADTNIT-TIPQGL--PPSLT 195 (330)
T ss_dssp CCCBB-----------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG--CTTCCEEECCSSCCC-SCCSSC--CTTCS
T ss_pred ccccc-----------CHhHhcCCccccEEECCCCcCCccCcChhhccC--CCCcCEEECCCCccc-cCCccc--cccCC
Confidence 11000 0011222333444444443322 11222222 566666666666432 233 11 15555
Q ss_pred eeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCc
Q 044382 339 HLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPAL 418 (543)
Q Consensus 339 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L 418 (543)
+|++++|. ++.+. ... +..+++|++|++++| .+++..+.
T Consensus 196 ~L~l~~n~-l~~~~------------------------------~~~----~~~l~~L~~L~Ls~n-~l~~~~~~----- 234 (330)
T 1xku_A 196 ELHLDGNK-ITKVD------------------------------AAS----LKGLNNLAKLGLSFN-SISAVDNG----- 234 (330)
T ss_dssp EEECTTSC-CCEEC------------------------------TGG----GTTCTTCCEEECCSS-CCCEECTT-----
T ss_pred EEECCCCc-CCccC------------------------------HHH----hcCCCCCCEEECCCC-cCceeChh-----
Confidence 55555542 22111 100 345667777777763 45422221
Q ss_pred cEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCC------CCCccEEec
Q 044382 419 EMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPR------IPKLEELKI 492 (543)
Q Consensus 419 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~------~~~L~~L~l 492 (543)
.+..+++|++|++++|....++..+..+++|++|++++| .++.++...+.. .+.|+.|++
T Consensus 235 -------------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 235 -------------SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp -------------TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred -------------hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 233466777777777776667777777888888888884 677777655532 377888899
Q ss_pred ccCCCCccccccCccccccCCccceEeeccC
Q 044382 493 NNIQNETCIWKSHNELLQDICSLKRLLITSC 523 (543)
Q Consensus 493 ~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c 523 (543)
+++ .++..... |..+..+.+|+.++++++
T Consensus 301 ~~N-~~~~~~i~-~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 301 FSN-PVQYWEIQ-PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSS-SSCGGGSC-GGGGTTCCCGGGEEC---
T ss_pred ecC-cccccccC-ccccccccceeEEEeccc
Confidence 884 45543222 567888888888888776
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-25 Score=231.51 Aligned_cols=84 Identities=24% Similarity=0.224 Sum_probs=39.9
Q ss_pred cCCeeeEEEecCCCcccc-CccccC-ccc-ccEEecCCCC-cc--ccchhhhcccccceeecCCCchhhh----hhHHHh
Q 044382 102 KLQRLRVFSLRGYHIYEL-PDSIGD-LRY-LRYLNLSGTV-IR--TLPESVNKLYNLHTLLLEGCRRLKK----LCADMG 171 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~l-p~~~~~-l~~-L~~L~L~~~~-i~--~lp~~~~~l~~L~~L~l~~~~~~~~----l~~~~~ 171 (543)
.+++|++|+|++|.++.. +..+.. ++. |++|++++|. ++ .++.....+++|++|++++|...+. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 455666666666554421 223332 222 6666665553 22 2233334556666666665532111 333334
Q ss_pred hhcccceeecCCCC
Q 044382 172 NLIKLHHLNDSNTD 185 (543)
Q Consensus 172 ~l~~L~~L~l~~~~ 185 (543)
.+++|++|++++|.
T Consensus 190 ~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE 203 (592)
T ss_dssp HCCCCCEEECTTCC
T ss_pred cCCCccEEEeeccC
Confidence 55566666665555
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-23 Score=197.41 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=64.5
Q ss_pred CCceEEEeeccccCC--ccchhhhhcCCCceEEeecccCC-CccccccccccccccccCCeeeEEEecCCCcc-ccCccc
Q 044382 48 KNLRHLSYIPEYFDG--GKRFEDLYDIQHLRTFLPVRLSN-GFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSI 123 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~~~~l~~-n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~~ 123 (543)
.++++|++.++.+.+ .. ...+..+++|++|. +++ |.+.+ .++..|.++++|++|++++|.++ .+|..|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~---L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLY---IGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEE---EEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCccc-ChhHhCCCCCCeee---CCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 345555555554443 11 13333444444443 442 44443 22333344555555555555544 344445
Q ss_pred cCcccccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhc-ccceeecCCCCCccccccccccc
Q 044382 124 GDLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLI-KLHHLNDSNTDSLEEMPLGIGKL 197 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~l~~l 197 (543)
..+++|++|++++|.++ .+|..+..+++|++|++++|...+.+|..++.++ +|++|++++|.+.+.+|..+..+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 55555555555555544 3444455555555555555433334444444444 45555555554333344444333
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=193.30 Aligned_cols=231 Identities=19% Similarity=0.254 Sum_probs=163.2
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
...++++|++++|.++.+|..+..+++|++|+|++|.++.+|..++.+++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 34789999999999999998888899999999999999999999999999999999997 45588888999999999999
Q ss_pred CCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
++|...+.+|..+.... + ...+.++++|++|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~--------------------------~-------------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTD--------------------------A-------------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhcc--------------------------c-------------------hhhhccCCCCCEEECcC
Confidence 99876777776543210 0 00145567788888888
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCcccee
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHL 340 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 340 (543)
|..+.. +..+..+++|++|++++|....++..+.. +++|++|++++|...+.++ .++.+++|++|
T Consensus 193 n~l~~l------------p~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 193 TGIRSL------------PASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ECCCCC------------CGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCcCcc------------hHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 776322 23355677788888888777776665554 7788888888877777666 56777788888
Q ss_pred eecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeecc
Q 044382 341 TVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILR 403 (543)
Q Consensus 341 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 403 (543)
++++|...+.++..+ ..+++|++|++++|+..+.+... ++.+++|+.+.+..
T Consensus 259 ~L~~n~~~~~~p~~~------~~l~~L~~L~L~~n~~~~~iP~~-----l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDI------HRLTQLEKLDLRGCVNLSRLPSL-----IAQLPANCIILVPP 310 (328)
T ss_dssp ECTTCTTCCBCCTTG------GGCTTCCEEECTTCTTCCCCCGG-----GGGSCTTCEEECCG
T ss_pred ECCCCCchhhcchhh------hcCCCCCEEeCCCCCchhhccHH-----HhhccCceEEeCCH
Confidence 887776555444332 22555555555554433332211 34555555555544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-24 Score=225.16 Aligned_cols=414 Identities=14% Similarity=0.053 Sum_probs=218.9
Q ss_pred CCCceEEEeeccccCC-----------cc--chhh-hhcCCCceEEeecccCCCcccccccccccccccc-CCe-eeEEE
Q 044382 47 PKNLRHLSYIPEYFDG-----------GK--RFED-LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-LQR-LRVFS 110 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~-----------~~--~~~~-~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~-l~~-L~~L~ 110 (543)
..++++|++.++.... .. .+.. ...+++|++|. +++|.+.+ ..+..+.. ++. |++|+
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~---L~~~~i~~----~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH---FRRMIVSD----LDLDRLAKARADDLETLK 144 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE---EESCBCCH----HHHHHHHHHHGGGCCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEE---eeccEecH----HHHHHHHHhccccCcEEE
Confidence 4569999997743210 00 0111 12677788776 77776665 33333334 344 99999
Q ss_pred ecCCC-cc--ccCccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCchh----hhhhHHHhhhcccce
Q 044382 111 LRGYH-IY--ELPDSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRRL----KKLCADMGNLIKLHH 178 (543)
Q Consensus 111 Ls~~~-l~--~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~ 178 (543)
+++|. ++ .++..+..+++|++|+|++|.+++ ++.....+++|++|++++|... ..++..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 99987 33 233334689999999999998763 3445678999999999987543 466666789999999
Q ss_pred eecCCCCCccccccccccccccccccceEecCC--CCCChhhhccccccccceecccccCcCCccchhhhccCCccccce
Q 044382 179 LNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKD--SGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKE 256 (543)
Q Consensus 179 L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~--~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~ 256 (543)
|++++|. +..+|..+..+++|++|++...... .......+..+..++ .+.+... .....+..+..+++|++
T Consensus 225 L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~-----~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 225 VKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC-RLGLSYM-----GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp EECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC-EEEETTC-----CTTTGGGGGGGGGGCCE
T ss_pred EeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc-ccCcccc-----chhHHHHHHhhcCCCcE
Confidence 9999998 6678877888899998865321111 011122233333333 2322211 11112222444555666
Q ss_pred eeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCC
Q 044382 257 LSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLP 335 (543)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~ 335 (543)
|+++++.. ........+..+++|+.|.+.++. ....++ ....++
T Consensus 298 L~Ls~~~l----------~~~~~~~~~~~~~~L~~L~L~~~~-------------------------~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 298 LDLLYALL----------ETEDHCTLIQKCPNLEVLETRNVI-------------------------GDRGLEVLAQYCK 342 (592)
T ss_dssp EEETTCCC----------CHHHHHHHHTTCTTCCEEEEEGGG-------------------------HHHHHHHHHHHCT
T ss_pred EecCCCcC----------CHHHHHHHHHhCcCCCEEeccCcc-------------------------CHHHHHHHHHhCC
Confidence 66654432 111122223445555555554221 111111 112334
Q ss_pred ccceeeecC----------ccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeecc--
Q 044382 336 SLKHLTVRG----------MSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILR-- 403 (543)
Q Consensus 336 ~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~-- 403 (543)
+|++|++++ |..++..+.... ...+++|++|++.. ..+++...... ...+++|++|++++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l----~~~~~~L~~L~l~~-~~l~~~~~~~l---~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIAL----AQGCQELEYMAVYV-SDITNESLESI---GTYLKNLCDFRLVLLD 414 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHH----HHHCTTCSEEEEEE-SCCCHHHHHHH---HHHCCSCCEEEEEECS
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHH----HhhCccCeEEEeec-CCccHHHHHHH---HhhCCCCcEEEEeecC
Confidence 444444442 322221110000 01245555555522 22222211111 12366666666652
Q ss_pred -CcCccCCCC---------CCCCCccEEEEecccC-cc-----cccCCCCccceEEEcCCCCee--eecccCCCCCCceE
Q 044382 404 -CSKLQGTFP---------EHLPALEMLVIVECNE-LS-----ISIASLPALCKMEIGGCKKVV--WRSATDHLGSQNSV 465 (543)
Q Consensus 404 -c~~l~~~lp---------~~l~~L~~L~l~~~~~-l~-----~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L 465 (543)
|+.++ ..| ..+++|++|++.+|.. +. .....+++|+.|+|++|.... ++..+..+++|++|
T Consensus 415 ~~n~l~-~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 REERIT-DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CCSCCS-SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCcccc-CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 44555 322 2366677777766543 11 111236777778887776532 34455667788888
Q ss_pred EEcCCCCCccc-CCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeecc
Q 044382 466 VCRDTSNQVFL-SGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITS 522 (543)
Q Consensus 466 ~l~~c~~l~~l-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~ 522 (543)
+|++|+ +++. .......+++|++|++++|+ ++.... ......++.|+...+..
T Consensus 494 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~--~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 494 EMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQ--DLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCT--TGGGGCCTTEEEEEECC
T ss_pred eccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHH--HHHHHhCCCcEEEEecC
Confidence 888875 4432 12223457788888888865 554321 01122345555554444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=181.41 Aligned_cols=292 Identities=14% Similarity=0.112 Sum_probs=187.0
Q ss_pred CceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcc
Q 044382 49 NLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLR 127 (543)
Q Consensus 49 ~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~ 127 (543)
+++.+++..+.+..... .+ .+.++.| ++++|.+.+ ++. ..|.++++|++|++++|.++.+ |..|+.++
T Consensus 32 ~l~~l~~~~~~l~~lp~--~~--~~~l~~L---~L~~n~i~~-~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK--DL--PPDTALL---DLQNNKITE-IKD---GDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCCSCCC--SC--CTTCCEE---ECCSSCCCC-BCT---TTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCeEEEecCCCccccCc--cC--CCCCeEE---ECCCCcCCE-eCh---hhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 57788888776643321 12 2456665 488888885 222 2455899999999999998877 77899999
Q ss_pred cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcc--ccccccccccccccccc
Q 044382 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLE--EMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~~ 205 (543)
+|++|++++|.++++|..+. ++|++|++++|......+..+.++++|++|++++|.+.. ..+..+..+++|+.|++
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 99999999999998887765 789999999974433334558899999999999998322 34455777777777754
Q ss_pred eEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCC
Q 044382 206 FVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKP 285 (543)
Q Consensus 206 ~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (543)
..+... .+. ..+ .++|++|++++|..... ....+..
T Consensus 179 ~~n~l~------------~l~-------------------~~~--~~~L~~L~l~~n~l~~~-----------~~~~~~~ 214 (330)
T 1xku_A 179 ADTNIT------------TIP-------------------QGL--PPSLTELHLDGNKITKV-----------DAASLKG 214 (330)
T ss_dssp CSSCCC------------SCC-------------------SSC--CTTCSEEECTTSCCCEE-----------CTGGGTT
T ss_pred CCCccc------------cCC-------------------ccc--cccCCEEECCCCcCCcc-----------CHHHhcC
Confidence 322110 000 001 15677777776655211 1234566
Q ss_pred CCCCcEEEEeccCCCCCCC-CCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCC-CCCC
Q 044382 286 HKNLEQFGICGYGGTKFPT-WLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGD-DSPI 362 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~ 362 (543)
+++|+.|+++++....++. .+.. +++|++|++++|... .++ .+..+++|++|++++| .++.++...... ....
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNT 290 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGG--STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCT
T ss_pred CCCCCEEECCCCcCceeChhhccC--CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC-cCCccChhhcCCccccc
Confidence 7788888888877665543 3433 778888888888654 555 6778888888888887 344444332221 1122
Q ss_pred CCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccC
Q 044382 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRC 404 (543)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 404 (543)
..+.++.|++.+++. ..+...+ ..+..+++++.++++++
T Consensus 291 ~~~~l~~l~l~~N~~-~~~~i~~--~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 291 KKASYSGVSLFSNPV-QYWEIQP--STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TSCCCSEEECCSSSS-CGGGSCG--GGGTTCCCGGGEEC---
T ss_pred ccccccceEeecCcc-cccccCc--cccccccceeEEEeccc
Confidence 356677777777542 2221111 11456777777777763
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=183.49 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=191.2
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDL 126 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l 126 (543)
.+++.+++..+.+..... .+ .++++.| ++++|.+.+ ++ +..|.++++|++|++++|.++.+ |..|+.+
T Consensus 33 c~l~~l~~~~~~l~~ip~--~~--~~~l~~L---~l~~n~i~~-~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPK--EI--SPDTTLL---DLQNNDISE-LR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp EETTEEECCSSCCSSCCS--CC--CTTCCEE---ECCSSCCCE-EC---TTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred ccCCEEECCCCCccccCC--CC--CCCCeEE---ECCCCcCCc-cC---HhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 357889988887654322 12 3566666 489988875 22 23556899999999999999977 6779999
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcc--ccccccccccccccc
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLE--EMPLGIGKLTCLQTL 203 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L 203 (543)
++|++|++++|.++.+|..+. ++|++|++++| .+..+|. .++.+++|++|++++|.+.. ..|..+..+ +|+.|
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 999999999999999988766 89999999997 4555654 47899999999999998321 344556655 67766
Q ss_pred cceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhccc
Q 044382 204 CNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDML 283 (543)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 283 (543)
++..+.... + +..+ .++|++|++++|.....+ ...+
T Consensus 178 ~l~~n~l~~------------l-------------------~~~~--~~~L~~L~l~~n~i~~~~-----------~~~l 213 (332)
T 2ft3_A 178 RISEAKLTG------------I-------------------PKDL--PETLNELHLDHNKIQAIE-----------LEDL 213 (332)
T ss_dssp BCCSSBCSS------------C-------------------CSSS--CSSCSCCBCCSSCCCCCC-----------TTSS
T ss_pred ECcCCCCCc------------c-------------------Cccc--cCCCCEEECCCCcCCccC-----------HHHh
Confidence 543221100 0 0001 156778888777653321 2345
Q ss_pred CCCCCCcEEEEeccCCCCCCC-CCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCC-CC
Q 044382 284 KPHKNLEQFGICGYGGTKFPT-WLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGD-DS 360 (543)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~ 360 (543)
..+++|+.|++++|....++. ++.. +++|++|++++|... .+| .+..+++|++|++++| .++.++...... ..
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGF 289 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSC
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC-CCCccChhHcccccc
Confidence 667788888888887666654 3443 788888988888654 555 6778888999998887 444444332221 11
Q ss_pred CCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccC
Q 044382 361 PIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRC 404 (543)
Q Consensus 361 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 404 (543)
...++.|+.|++.+++.......... +..+++|+.+++++|
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~---~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPAT---FRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGG---GTTBCCSTTEEC---
T ss_pred ccccccccceEeecCcccccccCccc---ccccchhhhhhcccc
Confidence 22356677788877542211111111 456777777777764
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=187.73 Aligned_cols=125 Identities=25% Similarity=0.384 Sum_probs=105.2
Q ss_pred CCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYN 151 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~ 151 (543)
.++++.|. +++|.+. .+++.+.++++|++|++++|.++.+|..++.+++|++|++++|.++.+|..+..+++
T Consensus 80 ~~~l~~L~---L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALE---LRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp STTCCEEE---EESSCCS-----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred ccceeEEE---ccCCCch-----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 45666665 8888887 455566789999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCchhhhhhHHHhh---------hcccceeecCCCCCccccccccccccccccccc
Q 044382 152 LHTLLLEGCRRLKKLCADMGN---------LIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 152 L~~L~l~~~~~~~~l~~~~~~---------l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
|++|++++|...+.+|..++. +++|++|++++|. +..+|..++.+++|+.|++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKI 213 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEE
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEc
Confidence 999999998888888876654 8888888888888 5677777777777776643
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=187.68 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=68.3
Q ss_pred CCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCC
Q 044382 393 FPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSN 472 (543)
Q Consensus 393 ~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 472 (543)
+++|+.|++++ +.++ .+|..+++|+.|++.++.... ....+++|+.|++++|....++. .+++|++|++++| .
T Consensus 200 ~~~L~~L~L~~-N~l~-~l~~~~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~ 272 (622)
T 3g06_A 200 PSELYKLWAYN-NRLT-SLPALPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-Q 272 (622)
T ss_dssp CTTCCEEECCS-SCCS-SCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-C
T ss_pred cchhhEEECcC-Cccc-ccCCCCCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-C
Confidence 45677777777 3666 666666677777777664333 22446778888888877666555 4678888888885 6
Q ss_pred CcccCCCcCCCCCCccEEecccCCCCccc
Q 044382 473 QVFLSGPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 473 l~~l~~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
++.+|.. +..+++|+.|++++| .++..
T Consensus 273 L~~lp~~-l~~l~~L~~L~L~~N-~l~~~ 299 (622)
T 3g06_A 273 LTRLPES-LIHLSSETTVNLEGN-PLSER 299 (622)
T ss_dssp CCSCCGG-GGGSCTTCEEECCSC-CCCHH
T ss_pred CCcCCHH-HhhccccCEEEecCC-CCCCc
Confidence 7777765 677888888888884 45543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-23 Score=214.16 Aligned_cols=394 Identities=16% Similarity=0.102 Sum_probs=236.8
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Ccc-cc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDS-IG 124 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~-~~ 124 (543)
+.++++|+++.+.+........+..+++|++|. +++|.+.......++..+..+++|++|++++|.++.. +.. +.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~---L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVR---LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEE---EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEE---ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 567899999999876554333367788888886 8888777533334455666889999999999998753 322 23
Q ss_pred Ccc----cccEEecCCCCcc-----ccchhhhcccccceeecCCCchhhhhhHHHhh-----hcccceeecCCCCCccc-
Q 044382 125 DLR----YLRYLNLSGTVIR-----TLPESVNKLYNLHTLLLEGCRRLKKLCADMGN-----LIKLHHLNDSNTDSLEE- 189 (543)
Q Consensus 125 ~l~----~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~-----l~~L~~L~l~~~~~~~~- 189 (543)
.++ +|++|++++|.++ .+|..+..+++|++|++++|......+..+.. .++|++|++++|.+...
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 455 7999999999888 45788899999999999998643333333332 45799999999984332
Q ss_pred ---cccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhcc-CCccccceeeeeeecCC
Q 044382 190 ---MPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARL-DGKKNLKELSLNWTCST 265 (543)
Q Consensus 190 ---lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 265 (543)
++..+..+++|++|++..+.... . ....+...+ ...++|++|++++|..+
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~-~-------------------------~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINE-A-------------------------GVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHH-H-------------------------HHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcch-H-------------------------HHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 34445566777777543221100 0 000000001 12457777877766542
Q ss_pred CCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCC------CCCCCCCCCCCccEEEeecCCCCCC----CC-CCCCC
Q 044382 266 DGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF------PTWLGDSSFLNLVTLKFEDCGMCTA----LP-SVGQL 334 (543)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~~~l 334 (543)
. .........+..+++|++|+++++..... +.+.. .+++|++|++++|..... ++ .+..+
T Consensus 213 ~-------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 213 S-------DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH--PSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp T-------THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS--TTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred H-------HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc--CCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 1 11112334455677888888887764321 11122 267888888888855332 33 45567
Q ss_pred CccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCC
Q 044382 335 PSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEH 414 (543)
Q Consensus 335 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~ 414 (543)
++|++|++++|. ++..+............++|++|++++|. ++.......+..+..+++|++|++++| .+++..+.
T Consensus 284 ~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~- 359 (461)
T 1z7x_W 284 ESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR- 359 (461)
T ss_dssp TTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH-
T ss_pred CCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH-
Confidence 889999998873 33221111110001234689999998864 332211111111346799999999996 66522111
Q ss_pred CCCccEEEEecccCcccccC-CCCccceEEEcCCCCe-----eeecccCCCCCCceEEEcCCCCCcccC-----CCcCCC
Q 044382 415 LPALEMLVIVECNELSISIA-SLPALCKMEIGGCKKV-----VWRSATDHLGSQNSVVCRDTSNQVFLS-----GPLKPR 483 (543)
Q Consensus 415 l~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~c~~l~~l~-----~~~~~~ 483 (543)
.+...+. ..++|++|++++|... .++..+..+++|++|++++| .++... ...-..
T Consensus 360 -------------~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 360 -------------ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQP 425 (461)
T ss_dssp -------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTST
T ss_pred -------------HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccC
Confidence 0001111 1567778888877665 35666667888889999886 444321 111123
Q ss_pred CCCccEEecccCC
Q 044382 484 IPKLEELKINNIQ 496 (543)
Q Consensus 484 ~~~L~~L~l~~c~ 496 (543)
.++|+.|.+.++.
T Consensus 426 ~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 426 GCLLEQLVLYDIY 438 (461)
T ss_dssp TCCCCEEECTTCC
T ss_pred Ccchhheeecccc
Confidence 4578888887753
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=185.83 Aligned_cols=223 Identities=18% Similarity=0.161 Sum_probs=145.8
Q ss_pred EEeecccCCCccccccccccccccccCCeeeEEEecC-CCcc-ccCccccCcccccEEecCCCCcc-ccchhhhcccccc
Q 044382 77 TFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRG-YHIY-ELPDSIGDLRYLRYLNLSGTVIR-TLPESVNKLYNLH 153 (543)
Q Consensus 77 ~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~ 153 (543)
.+..+++++|.+.+. ..+++.+.++++|++|++++ |.+. .+|..|+++++|++|++++|.++ .+|..+..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCC--cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 344445888888751 02345666899999999995 7766 67888999999999999999998 7788899999999
Q ss_pred eeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccc-ccccccceEecCCCCCChhhhccccccccceecc
Q 044382 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLT-CLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKIS 232 (543)
Q Consensus 154 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~-~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~ 232 (543)
+|++++|...+.+|..++.+++|++|++++|.+.+.+|..+..++ +|+.|++..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l---------------------- 186 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL---------------------- 186 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE----------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee----------------------
Confidence 999999865557888899999999999999995557888888877 777775322210
Q ss_pred cccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCC
Q 044382 233 KLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFL 312 (543)
Q Consensus 233 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 312 (543)
....+..+..+. |++|++++|.... .....+..+++|+.|++++|.....+..+.. ++
T Consensus 187 --------~~~~~~~~~~l~-L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--l~ 244 (313)
T 1ogq_A 187 --------TGKIPPTFANLN-LAFVDLSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGL--SK 244 (313)
T ss_dssp --------EEECCGGGGGCC-CSEEECCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCCC--CT
T ss_pred --------eccCChHHhCCc-ccEEECcCCcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCcccc--cC
Confidence 000111133333 7777776655311 1223344555566666655554333222222 45
Q ss_pred CccEEEeecCCCCCCCC-CCCCCCccceeeecCc
Q 044382 313 NLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGM 345 (543)
Q Consensus 313 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 345 (543)
+|++|++++|...+.+| .+..+++|++|++++|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 56666666555443444 4555555555555555
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-23 Score=219.67 Aligned_cols=257 Identities=14% Similarity=0.100 Sum_probs=122.3
Q ss_pred cCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEE-EeccCCCCCCCCCCCCCCCCccEEEeecCCCCC
Q 044382 248 LDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFG-ICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCT 326 (543)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 326 (543)
+..+++|++|.+..+... .....-......+..+++|+.+. +.+.....++..+. .+++|++|++++|....
T Consensus 231 ~~~~~~L~~L~l~~~~~~-----~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 231 LQRAPQLEELGTGGYTAE-----VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHCTTCSEEECSBCCCC-----CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCH
T ss_pred HhcCCcceEcccccccCc-----cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCH
Confidence 455666666665433210 00011112233455666666662 22222112222222 25677777777765221
Q ss_pred C-CC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCc--------ccccccccCCCCCCCCCCCcc
Q 044382 327 A-LP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDL--------QEWEEWIPHGSSQGVERFPKL 396 (543)
Q Consensus 327 ~-~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~~~L 396 (543)
. +. .+..+++|++|++++| ++..+.... ...+++|++|++.++ ..+++...... ...+++|
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l----~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l---~~~~~~L 374 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVL----ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV---SMGCPKL 374 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH----HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH---HHHCTTC
T ss_pred HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHH----HHhCCCCCEEEEecCcccccccCCCCCHHHHHHH---HHhchhH
Confidence 1 11 2446677777777766 111110000 112566777776332 22222111111 1236777
Q ss_pred cEEeeccCcCccCCCC----CCCCCccEEEEe-----cccCccc---------ccCCCCccceEEEcCCCCeeeeccc-C
Q 044382 397 RELHILRCSKLQGTFP----EHLPALEMLVIV-----ECNELSI---------SIASLPALCKMEIGGCKKVVWRSAT-D 457 (543)
Q Consensus 397 ~~L~l~~c~~l~~~lp----~~l~~L~~L~l~-----~~~~l~~---------~~~~~~~L~~L~l~~~~~~~~~~~~-~ 457 (543)
++|.+ +|+.+++..+ ..+++|+.|++. +|..++. .+..+++|+.|+++++-.-.....+ .
T Consensus 375 ~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~ 453 (594)
T 2p1m_B 375 ESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453 (594)
T ss_dssp CEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH
T ss_pred HHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHH
Confidence 77744 3455542211 245677777777 4444431 1233677777777651111111112 2
Q ss_pred CCCCCceEEEcCCCCCcccC-CCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCC
Q 044382 458 HLGSQNSVVCRDTSNQVFLS-GPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 458 ~~~~L~~L~l~~c~~l~~l~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
.+++|++|++++|. +++.. ......+++|++|++++|+. +.... ......+++|++|++++|+.
T Consensus 454 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~--~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL--LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHH--HHTGGGGGGSSEEEEESSCC
T ss_pred hchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHH--HHHHHhCCCCCEEeeeCCCC
Confidence 36777777777764 43322 11124567777888877653 43211 11334467777788877754
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-24 Score=216.52 Aligned_cols=130 Identities=17% Similarity=0.059 Sum_probs=78.3
Q ss_pred CCCcccEEeeccCcCccCC--------CCCCCCCccEEEEecccCcc-------cccCCCCccceEEEcCCCCeee----
Q 044382 392 RFPKLRELHILRCSKLQGT--------FPEHLPALEMLVIVECNELS-------ISIASLPALCKMEIGGCKKVVW---- 452 (543)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~~--------lp~~l~~L~~L~l~~~~~l~-------~~~~~~~~L~~L~l~~~~~~~~---- 452 (543)
.+++|++|++++| .+++. +....++|++|++.+|.... ..+..+++|++|++++|.....
T Consensus 282 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 282 AKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 4666777777664 44311 11223567777776665332 1234478999999999966442
Q ss_pred -ecccC-CCCCCceEEEcCCCCCc-----ccCCCcCCCCCCccEEecccCCCCccccccC-ccccc-cCCccceEeeccC
Q 044382 453 -RSATD-HLGSQNSVVCRDTSNQV-----FLSGPLKPRIPKLEELKINNIQNETCIWKSH-NELLQ-DICSLKRLLITSC 523 (543)
Q Consensus 453 -~~~~~-~~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~l~-~l~~L~~L~l~~c 523 (543)
...+. ..++|++|++++| .++ .++.. +..+++|++|++++| .++...... ...+. ...+|+.|.+.++
T Consensus 361 l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAAT-LLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH-HHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHH-HHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 12222 2679999999997 555 45544 567899999999995 566442100 00111 1346888888777
Q ss_pred CC
Q 044382 524 PK 525 (543)
Q Consensus 524 ~~ 525 (543)
.-
T Consensus 438 ~~ 439 (461)
T 1z7x_W 438 YW 439 (461)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=188.76 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCC
Q 044382 393 FPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSN 472 (543)
Q Consensus 393 ~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 472 (543)
+++|++|++++ |.++ .+|..+++|+.|++.++...... ..+++|+.|++++|....++..+..+++|++|++++|+.
T Consensus 220 ~~~L~~L~Ls~-N~L~-~lp~~l~~L~~L~Ls~N~L~~lp-~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 220 PSGLKELIVSG-NRLT-SLPVLPSELKELMVSGNRLTSLP-MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCCCEEEccC-CccC-cCCCCCCcCcEEECCCCCCCcCC-cccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 46788888887 4777 67777788888888887443322 257899999999998888888899999999999999754
Q ss_pred C
Q 044382 473 Q 473 (543)
Q Consensus 473 l 473 (543)
-
T Consensus 297 ~ 297 (622)
T 3g06_A 297 S 297 (622)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-23 Score=216.61 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=98.0
Q ss_pred CCceEEEeeccccCCccc-------------hhh-hhcCCCceEEeecccCCCccccccccccccccc-cCCeeeEEEec
Q 044382 48 KNLRHLSYIPEYFDGGKR-------------FED-LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLR 112 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~-------------~~~-~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~Ls 112 (543)
.++++|++.++....... +.. ...+++|++|. +++|.+.+ ..+..+. .+++|++|+++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~---L~~~~~~~----~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIR---LKRMVVTD----DCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE---EESCBCCH----HHHHHHHHHCTTCCEEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEE---eeCcEEcH----HHHHHHHHhCCCCcEEeCC
Confidence 568888888764211000 111 23566777775 67766665 3333333 67889999998
Q ss_pred CC-Cccc--cCccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCc-hh--hhhhHHHhhhcccceeec
Q 044382 113 GY-HIYE--LPDSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCR-RL--KKLCADMGNLIKLHHLND 181 (543)
Q Consensus 113 ~~-~l~~--lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~-~~--~~l~~~~~~l~~L~~L~l 181 (543)
+| .++. ++..+.++++|++|++++|.++. ++.....+++|++|++++|. .+ ..++..+..+++|+.|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 88 4553 44445678899999999887664 23333467789999998874 11 233343456789999999
Q ss_pred CCCCCccccccccccccccccccc
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
++|..+..+|..+..+++|++|++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCcHHHHHHHHhcCCcceEccc
Confidence 888546667767777788888753
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-20 Score=179.41 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=89.4
Q ss_pred CCCCcEEEEeccC-CCCCC-CCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCC
Q 044382 286 HKNLEQFGICGYG-GTKFP-TWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPI 362 (543)
Q Consensus 286 ~~~L~~L~l~~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 362 (543)
+++|+.|+++++. ...++ ..+. .+++|++|++++|......+ .+..+++|++|++++|. +
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l-------------- 210 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-H-------------- 210 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-S--------------
T ss_pred CCCCcEEECCCCccccccCHHHcc--CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-c--------------
Confidence 4455556666653 33332 2233 25666666666665444333 45556666666665552 1
Q ss_pred CCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceE
Q 044382 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKM 442 (543)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 442 (543)
+.+... . ...+++|++|++++| .+++..+..++. ....+.++.+
T Consensus 211 ----------------~~~~~~-~---~~~~~~L~~L~L~~n-~l~~~~~~~l~~---------------~~~~~~l~~l 254 (353)
T 2z80_A 211 ----------------ILLLEI-F---VDVTSSVECLELRDT-DLDTFHFSELST---------------GETNSLIKKF 254 (353)
T ss_dssp ----------------TTHHHH-H---HHHTTTEEEEEEESC-BCTTCCCC---------------------CCCCCCEE
T ss_pred ----------------ccchhh-h---hhhcccccEEECCCC-cccccccccccc---------------ccccchhhcc
Confidence 111100 0 234678888888884 666322222111 1123445555
Q ss_pred EEcCCCCe-----eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCC
Q 044382 443 EIGGCKKV-----VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQ 496 (543)
Q Consensus 443 ~l~~~~~~-----~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~ 496 (543)
++.++... .++..+..+++|++|++++| .++.+|...+..+++|++|++++|+
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 55555432 25566777899999999995 7788888877889999999999854
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-20 Score=178.48 Aligned_cols=253 Identities=19% Similarity=0.168 Sum_probs=153.0
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-c
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-I 123 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~ 123 (543)
.+++++++|++++|.+..... ..+..+++|++|. +++|.+.+ ..+..|.++++|++|++++|.++.+|.. +
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~---L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISN-SDLQRCVNLQALV---LTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE---CTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred cccccCcEEECCCCcCcccCH-HHhccCCCCCEEE---CCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 445567777777776654432 3455556666554 67776664 1222344677777777777777766654 6
Q ss_pred cCcccccEEecCCCCccccch--hhhcccccceeecCCCchhhhh-hHHHhhhcccceeecCCCCCcccccccccccccc
Q 044382 124 GDLRYLRYLNLSGTVIRTLPE--SVNKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 200 (543)
+.+++|++|++++|.++.+|. .+..+++|++|++++|..+..+ +..++++++|++|++++|.+....|..++.+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 677777777777777777765 5667777777777776444444 3446677777777777777333345566666666
Q ss_pred ccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHh
Q 044382 201 QTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVL 280 (543)
Q Consensus 201 ~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 280 (543)
++|++..+.. .......+..+++|++|++++|.....+.. .+
T Consensus 201 ~~L~l~~n~l------------------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l 242 (353)
T 2z80_A 201 SHLILHMKQH------------------------------ILLLEIFVDVTSSVECLELRDTDLDTFHFS--------EL 242 (353)
T ss_dssp EEEEEECSCS------------------------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred CeecCCCCcc------------------------------ccchhhhhhhcccccEEECCCCcccccccc--------cc
Confidence 6664322211 111111234467788888888776443321 11
Q ss_pred cccCCCCCCcEEEEeccCCCC-----CCCCCCCCCCCCccEEEeecCCCCCCCC-C-CCCCCccceeeecCcc
Q 044382 281 DMLKPHKNLEQFGICGYGGTK-----FPTWLGDSSFLNLVTLKFEDCGMCTALP-S-VGQLPSLKHLTVRGMS 346 (543)
Q Consensus 281 ~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~-~~~l~~L~~L~l~~~~ 346 (543)
......+.++.+.+.++.... +|.++.. +++|++|++++|... .++ . ++.+++|++|++++|+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~--l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHT--CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhc--ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 122345667777777665432 3334443 778888888888654 455 3 5788888888888885
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=179.86 Aligned_cols=221 Identities=15% Similarity=0.159 Sum_probs=130.8
Q ss_pred CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccch-hhhccc
Q 044382 73 QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPE-SVNKLY 150 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~ 150 (543)
++++.|. +++|.+.+ ++ +..|.++++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+|. .+..++
T Consensus 64 ~~l~~L~---L~~n~i~~-~~---~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLN---LHENQIQI-IK---VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEE---CCSCCCCE-EC---TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCcEEE---ccCCcCCe-eC---HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 3455543 77777664 22 233447777777777777777664 457777777777777777777754 466777
Q ss_pred ccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccc
Q 044382 151 NLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGT 228 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~ 228 (543)
+|++|++++|. +..++ ..+.++++|++|++++|..+..++. .+..+++|+.|++..+... .+
T Consensus 137 ~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------------~~--- 200 (440)
T 3zyj_A 137 KLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------------EI--- 200 (440)
T ss_dssp SCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS------------SC---
T ss_pred cCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc------------cc---
Confidence 77777777763 44444 3466777777777777554665554 3556666666643211100 00
Q ss_pred eecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCC-CCC
Q 044382 229 LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT-WLG 307 (543)
Q Consensus 229 L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~ 307 (543)
. .+..+++|++|++++|..... ....+..+++|+.|++++|....++. .+.
T Consensus 201 ---------~--------~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 201 ---------P--------NLTPLIKLDELDLSGNHLSAI-----------RPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp ---------C--------CCTTCSSCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred ---------c--------ccCCCcccCEEECCCCccCcc-----------ChhhhccCccCCEEECCCCceeEEChhhhc
Confidence 0 144455666666666554211 12344556666777776666554433 233
Q ss_pred CCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCcc
Q 044382 308 DSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 346 (543)
.+++|+.|++++|......+ .+..+++|+.|++++|+
T Consensus 253 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 --NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 36777777777775543333 45667777777777764
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=180.29 Aligned_cols=240 Identities=14% Similarity=0.128 Sum_probs=147.2
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~ 128 (543)
.+.++.....+.... ..+ .++++.|. +++|.+.+ ..+..|.++++|++|+|++|.++.++ ..|.++++
T Consensus 56 ~~~v~c~~~~l~~iP--~~~--~~~l~~L~---L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP--QGI--PSNTRYLN---LMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECCSSCCSSCC--SCC--CTTCSEEE---CCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CcEEEECCCCcCccC--CCC--CCCccEEE---CcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 445555555443222 112 13555554 77777775 22234447888888888888877664 56778888
Q ss_pred ccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcccccc-ccccccccccccc
Q 044382 129 LRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCN 205 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~ 205 (543)
|++|+|++|.++.+|.. +..+++|++|++++| .+..+|. .+.++++|++|++++|..++.++. .+..+++|+.|++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 88888888888877544 677888888888886 3445543 467788888888887665666664 3666666666643
Q ss_pred eEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCC
Q 044382 206 FVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKP 285 (543)
Q Consensus 206 ~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (543)
..+... .. ..+..+++|++|++++|..... ....+..
T Consensus 204 ~~n~l~------------------------~~--------~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~ 240 (452)
T 3zyi_A 204 GMCNIK------------------------DM--------PNLTPLVGLEELEMSGNHFPEI-----------RPGSFHG 240 (452)
T ss_dssp TTSCCS------------------------SC--------CCCTTCTTCCEEECTTSCCSEE-----------CGGGGTT
T ss_pred CCCccc------------------------cc--------ccccccccccEEECcCCcCccc-----------CcccccC
Confidence 221100 00 0144556677777766654211 1234556
Q ss_pred CCCCcEEEEeccCCCCCCC-CCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCcc
Q 044382 286 HKNLEQFGICGYGGTKFPT-WLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 346 (543)
+++|+.|++++|....++. .+. .+++|+.|++++|......+ .+..+++|++|++++|+
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFD--GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ccCCCEEEeCCCcCceECHHHhc--CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 6777777777776554432 233 36778888887775543332 45677788888887764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-19 Score=171.19 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=34.9
Q ss_pred eeeEEEecCCCccccCcc-ccCcccccEEecCCCCcccc---chhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 105 RLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVIRTL---PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
+|++|++++|.++.+|.. |..+++|++|++++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEE
Confidence 444444444444444332 34444444444444444422 333344444444444443 2333333344444444444
Q ss_pred cCCCC
Q 044382 181 DSNTD 185 (543)
Q Consensus 181 l~~~~ 185 (543)
+++|.
T Consensus 108 l~~n~ 112 (306)
T 2z66_A 108 FQHSN 112 (306)
T ss_dssp CTTSE
T ss_pred CCCCc
Confidence 44444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=169.73 Aligned_cols=223 Identities=19% Similarity=0.118 Sum_probs=122.0
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc---CccccCcccccEEecCCCCccccchhhhccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL---PDSIGDLRYLRYLNLSGTVIRTLPESVNKLY 150 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~ 150 (543)
++++|. +++|.+.. ++..++. ++++|++|++++|.++.+ +..+..+++|++|++++|.++.+|..+..++
T Consensus 29 ~l~~L~---L~~n~l~~-i~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~ 101 (306)
T 2z66_A 29 SATRLE---LESNKLQS-LPHGVFD---KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 101 (306)
T ss_dssp TCCEEE---CCSSCCCC-CCTTTTT---TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCT
T ss_pred CCCEEE---CCCCccCc-cCHhHhh---ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCC
Confidence 444443 66666552 3333333 666777777777766543 3445566777777777777666666666677
Q ss_pred ccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccc
Q 044382 151 NLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGT 228 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~ 228 (543)
+|++|++++| .+..++ ..+..+++|++|++++|.+....+..+..+++|+.|++..+.. .
T Consensus 102 ~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------~-- 163 (306)
T 2z66_A 102 QLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF---------------Q-- 163 (306)
T ss_dssp TCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE---------------G--
T ss_pred CCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc---------------c--
Confidence 7777777765 333333 2456667777777777663333344455555555553211100 0
Q ss_pred eecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCC-CCC
Q 044382 229 LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT-WLG 307 (543)
Q Consensus 229 L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~ 307 (543)
....+..+..+++|++|++++|..+.. ....+..+++|+.|++++|....++. .+.
T Consensus 164 ------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 164 ------------ENFLPDIFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp ------------GGEECSCCTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred ------------cccchhHHhhCcCCCEEECCCCCcCCc-----------CHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 000111245556666666655544211 12234455666666666666555443 222
Q ss_pred CCCCCCccEEEeecCCCCCCCC-CCCCCC-ccceeeecCcc
Q 044382 308 DSSFLNLVTLKFEDCGMCTALP-SVGQLP-SLKHLTVRGMS 346 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~-~L~~L~l~~~~ 346 (543)
.+++|+.|++++|...+..+ .+..++ +|++|++++|+
T Consensus 221 --~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 221 --CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp --TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred --CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 36677777777775544444 455553 67777777664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=176.22 Aligned_cols=236 Identities=22% Similarity=0.240 Sum_probs=168.6
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccc-hhhhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~ 159 (543)
++.++.+.. +|..+++ .+++|+|++|.++.++ ..|.++++|++|+|++|.++.++ ..+..+++|++|++++
T Consensus 49 ~c~~~~l~~-iP~~~~~------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 49 ICVRKNLRE-VPDGIST------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp ECCSCCCSS-CCSCCCT------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred EeCCCCcCc-CCCCCCC------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 366666663 5555554 8899999999999875 67899999999999999999884 6788999999999999
Q ss_pred CchhhhhhH-HHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
| .+..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++..+. .+.
T Consensus 122 n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~--------------~l~----------- 174 (440)
T 3zyj_A 122 N-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELK--------------RLS----------- 174 (440)
T ss_dssp S-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCT--------------TCC-----------
T ss_pred C-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCC--------------Ccc-----------
Confidence 8 5666664 58899999999999999 666664 57788888888542211 000
Q ss_pred CCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC-CCCCCCCCCCccE
Q 044382 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDSSFLNLVT 316 (543)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~ 316 (543)
......+.++++|++|++++|..+.. ..+..+++|+.|++++|.+..++ ..+.. +++|+.
T Consensus 175 ----~i~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~ 235 (440)
T 3zyj_A 175 ----YISEGAFEGLSNLRYLNLAMCNLREI-------------PNLTPLIKLDELDLSGNHLSAIRPGSFQG--LMHLQK 235 (440)
T ss_dssp ----EECTTTTTTCSSCCEEECTTSCCSSC-------------CCCTTCSSCCEEECTTSCCCEECTTTTTT--CTTCCE
T ss_pred ----eeCcchhhcccccCeecCCCCcCccc-------------cccCCCcccCEEECCCCccCccChhhhcc--CccCCE
Confidence 11112267788899999988776422 23566778888888888766553 33443 778888
Q ss_pred EEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc
Q 044382 317 LKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ 376 (543)
Q Consensus 317 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (543)
|++++|......+ .+..+++|++|+|++| .++.+.... ...+++|+.|++.+++
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDL-----FTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTT-----TSSCTTCCEEECCSSC
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhH-----hccccCCCEEEcCCCC
Confidence 8888876654434 5777888888888887 444443222 2346778888887754
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-19 Score=177.41 Aligned_cols=236 Identities=22% Similarity=0.211 Sum_probs=171.2
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCcccc-chhhhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~ 159 (543)
+++++.+.. +|..+++ ++++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..+.++++|++|++++
T Consensus 60 ~c~~~~l~~-iP~~~~~------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 60 VCTRRGLSE-VPQGIPS------NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp ECCSSCCSS-CCSCCCT------TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCcCc-cCCCCCC------CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 466666663 5545554 899999999999977 56799999999999999999988 46789999999999999
Q ss_pred CchhhhhhH-HHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
| .+..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++..+. .+.
T Consensus 133 n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~--------------~l~----------- 185 (452)
T 3zyi_A 133 N-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELK--------------KLE----------- 185 (452)
T ss_dssp S-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCT--------------TCC-----------
T ss_pred C-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCC--------------Ccc-----------
Confidence 8 4656654 47889999999999999 667665 57888888888543211 111
Q ss_pred CCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC-CCCCCCCCCCccE
Q 044382 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDSSFLNLVT 316 (543)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~ 316 (543)
......+.++++|++|++++|..+.. ..+..+++|+.|++++|.+..++ ..+.. +++|+.
T Consensus 186 ----~i~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~ 246 (452)
T 3zyi_A 186 ----YISEGAFEGLFNLKYLNLGMCNIKDM-------------PNLTPLVGLEELEMSGNHFPEIRPGSFHG--LSSLKK 246 (452)
T ss_dssp ----EECTTTTTTCTTCCEEECTTSCCSSC-------------CCCTTCTTCCEEECTTSCCSEECGGGGTT--CTTCCE
T ss_pred ----ccChhhccCCCCCCEEECCCCccccc-------------ccccccccccEEECcCCcCcccCcccccC--ccCCCE
Confidence 01112267788899999988876422 23667788888888888876653 34443 788888
Q ss_pred EEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc
Q 044382 317 LKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ 376 (543)
Q Consensus 317 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (543)
|++++|......+ .+..+++|++|++++| .++.+.... ...+++|+.|++.+++
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDL-----FTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTS-----STTCTTCCEEECCSSC
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHH-----hccccCCCEEEccCCC
Confidence 8888886655444 6778888888888887 444443222 2347778888887754
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-19 Score=173.86 Aligned_cols=291 Identities=12% Similarity=0.059 Sum_probs=154.9
Q ss_pred CeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 104 QRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
..++..+++.+.+...+. .+..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++. +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEEC
Confidence 356666666666654433 2456667777777777777663 456677777777777663 332332 566666777776
Q ss_pred CCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
++|. +..++. .++|++|++++
T Consensus 88 s~n~-l~~l~~----------------------------------------------------------~~~L~~L~l~~ 108 (317)
T 3o53_A 88 NNNY-VQELLV----------------------------------------------------------GPSIETLHAAN 108 (317)
T ss_dssp CSSE-EEEEEE----------------------------------------------------------CTTCCEEECCS
T ss_pred cCCc-cccccC----------------------------------------------------------CCCcCEEECCC
Confidence 6665 332211 12334444433
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCcccee
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHL 340 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 340 (543)
|.. ..++.. .+++|++|++++|......+ .++.+++|++|
T Consensus 109 n~l-----------------------------------~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 149 (317)
T 3o53_A 109 NNI-----------------------------------SRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149 (317)
T ss_dssp SCC-----------------------------------SEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE
T ss_pred Ccc-----------------------------------CCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEE
Confidence 332 111110 14456666666665443333 45566777777
Q ss_pred eecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccE
Q 044382 341 TVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEM 420 (543)
Q Consensus 341 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~ 420 (543)
++++|.........+. ..+++|++|+++++. ++.+.. ...+++|++|++++| .++ .+|.
T Consensus 150 ~Ls~N~l~~~~~~~~~-----~~l~~L~~L~L~~N~-l~~~~~------~~~l~~L~~L~Ls~N-~l~-~l~~------- 208 (317)
T 3o53_A 150 DLKLNEIDTVNFAELA-----ASSDTLEHLNLQYNF-IYDVKG------QVVFAKLKTLDLSSN-KLA-FMGP------- 208 (317)
T ss_dssp ECTTSCCCEEEGGGGG-----GGTTTCCEEECTTSC-CCEEEC------CCCCTTCCEEECCSS-CCC-EECG-------
T ss_pred ECCCCCCCcccHHHHh-----hccCcCCEEECCCCc-Cccccc------ccccccCCEEECCCC-cCC-cchh-------
Confidence 7766632221111110 124555555555532 222211 224666777777763 554 3321
Q ss_pred EEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcc
Q 044382 421 LVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETC 500 (543)
Q Consensus 421 L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~ 500 (543)
.+..+++|+.|++++|....++..+..+++|++|++++|+.........+..+++|+.|++.+|+.++.
T Consensus 209 -----------~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 209 -----------EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -----------GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred -----------hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 234467777777777777777777777777788887776433122223356677777777776666555
Q ss_pred ccccCccccccCCccceEeeccCCCCcccc
Q 044382 501 IWKSHNELLQDICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 501 l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 530 (543)
.. + .-...+.+....-..|..+.+-.
T Consensus 278 ~~---~-~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 278 QN---E-EECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp SS---S-CCCSSTTCEEETTEEEBCCTTTH
T ss_pred Cc---h-hccCCCceecccceeeccCChhH
Confidence 42 1 11112233333334466666533
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-19 Score=169.25 Aligned_cols=246 Identities=19% Similarity=0.213 Sum_probs=154.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccc-------cCCeeeEEEecCCCcc-cc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-------KLQRLRVFSLRGYHIY-EL 119 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-------~l~~L~~L~Ls~~~l~-~l 119 (543)
.+++.+++..|.+ .. ...+... ++.| ++++|.+... .++..+. ++++|++|++++|.++ .+
T Consensus 43 ~~L~~l~l~~n~l-~~--p~~~~~~--L~~L---~L~~n~l~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-AD--LGQFTDI--IKSL---SLKRLTVRAA---RIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EECTTHHHHCCTT-CC--CHHHHHH--HHHC---CCCEEEEEEE---ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred CCceeEeeccccc-cc--HHHHHHH--Hhhc---ccccccccCC---CcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 3456666666666 11 1333322 4444 5777777431 2222222 5788999999999887 56
Q ss_pred Cccc--cCcccccEEecCCCCccccchhhhcc-----cccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccc--c
Q 044382 120 PDSI--GDLRYLRYLNLSGTVIRTLPESVNKL-----YNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEE--M 190 (543)
Q Consensus 120 p~~~--~~l~~L~~L~L~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--l 190 (543)
|..+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|......|..++++++|++|++++|.+.+. +
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 7765 88899999999999888878878877 8899999998754333346688889999999998885443 2
Q ss_pred cccc--ccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCC
Q 044382 191 PLGI--GKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGL 268 (543)
Q Consensus 191 p~~l--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 268 (543)
|..+ +.+++|++|++..+... .........+..+++|++|++++|......
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~---------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGME---------------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCC---------------------------CHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHHHHhccCCCCCEEECCCCcCc---------------------------chHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 3333 56666666643211100 000111122445677888888777653221
Q ss_pred CCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCcc
Q 044382 269 SSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 346 (543)
+ ...+..+++|+.|++++|....+|..+. ++|++|++++|... .+|.+..+++|++|++++|+
T Consensus 245 ~----------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~-~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 245 G----------APSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp C----------CSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCC-SCCCTTTSCEEEEEECTTCT
T ss_pred c----------hhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCC-CChhHhhCCCCCEEeccCCC
Confidence 1 1223345677888888777766666543 57788888777553 33556777777777777763
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-19 Score=173.67 Aligned_cols=265 Identities=13% Similarity=0.116 Sum_probs=147.8
Q ss_pred cCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 102 KLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
.+++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ +..+++|++|++++| .+..++ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCCCcCEEE
Confidence 5556777777777666554 456667777777777776665543 666677777777665 333333 236677777
Q ss_pred cCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeee
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (543)
+++|. +..++.. .+++|+.|++..+.. .......+..+++|++|+++
T Consensus 106 l~~n~-l~~~~~~--~~~~L~~L~l~~N~l------------------------------~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 106 AANNN-ISRVSCS--RGQGKKNIYLANNKI------------------------------TMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CCSSC-CSEEEEC--CCSSCEEEECCSSCC------------------------------CSGGGBCTGGGSSEEEEECT
T ss_pred CCCCc-cCCcCcc--ccCCCCEEECCCCCC------------------------------CCccchhhhccCCCCEEECC
Confidence 77666 4443321 133444443211110 01111124445666666666
Q ss_pred eecCCCCCCCcccccHHHHhccc-CCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccce
Q 044382 261 WTCSTDGLSSTEAETEKDVLDML-KPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339 (543)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 339 (543)
+|..... ....+ ..+++|+.|++++|....++... .+++|++|++++|......+.+..+++|++
T Consensus 153 ~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 153 LNEIDTV-----------NFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp TSCCCEE-----------EGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred CCCCCcc-----------cHHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccCcccE
Confidence 5554211 01111 23566777777777665554332 266788888877755433335667788888
Q ss_pred eeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCcc
Q 044382 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALE 419 (543)
Q Consensus 340 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~ 419 (543)
|++++| .++.++..+ ..+++|+.|++.+++....... .. ...+++|+.+++.+++.++|..|..+..-.
T Consensus 219 L~L~~N-~l~~l~~~~------~~l~~L~~L~l~~N~~~~~~~~-~~---~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~ 287 (317)
T 3o53_A 219 ISLRNN-KLVLIEKAL------RFSQNLEHFDLRGNGFHCGTLR-DF---FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (317)
T ss_dssp EECTTS-CCCEECTTC------CCCTTCCEEECTTCCCBHHHHH-HH---HHTCHHHHHHHHHHHHHHHSSSSCCCSSTT
T ss_pred EECcCC-cccchhhHh------hcCCCCCEEEccCCCccCcCHH-HH---HhccccceEEECCCchhccCCchhccCCCc
Confidence 888777 444444332 3467788888877543312211 11 457888888888887778766665444333
Q ss_pred EEE--EecccCcc
Q 044382 420 MLV--IVECNELS 430 (543)
Q Consensus 420 ~L~--l~~~~~l~ 430 (543)
... -.+|..+.
T Consensus 288 ~~~~~~~cc~~l~ 300 (317)
T 3o53_A 288 LGHYGAYCCEDLP 300 (317)
T ss_dssp CEEETTEEEBCCT
T ss_pred eecccceeeccCC
Confidence 333 23455443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=163.48 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=97.0
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L 129 (543)
+.++...+.+..... .+ .++++.|. +++|.+.+ ++.. .|..+++|++|++++|.++.+ |..|..+++|
T Consensus 14 ~~~~c~~~~l~~ip~--~~--~~~l~~L~---l~~n~i~~-~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV--GI--PAASQRIF---LHGNRISH-VPAA---SFRACRNLTILWLHSNVLARIDAAAFTGLALL 82 (285)
T ss_dssp CEEECCSSCCSSCCT--TC--CTTCSEEE---CTTSCCCE-ECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred eEEEcCcCCcccCCc--CC--CCCceEEE---eeCCcCCc-cCHH---HcccCCCCCEEECCCCccceeCHhhcCCccCC
Confidence 566666665543321 11 34566664 78777775 2222 344788888888888888876 6678888888
Q ss_pred cEEecCCCC-cccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc-cccccccccccc
Q 044382 130 RYLNLSGTV-IRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLC 204 (543)
Q Consensus 130 ~~L~L~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~ 204 (543)
++|++++|. ++.+ |..+..+++|++|++++|......|..+.++++|++|++++|. +..++. .++.+++|+.|+
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEE
Confidence 888888886 7777 6678888888888888874433335557788888888888888 555543 356666666654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=148.06 Aligned_cols=129 Identities=20% Similarity=0.231 Sum_probs=81.2
Q ss_pred CCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCccc---ccCCCCccceEEEcCCCCeeeec-ccCCCCCCc
Q 044382 391 ERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSI---SIASLPALCKMEIGGCKKVVWRS-ATDHLGSQN 463 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 463 (543)
..+++|++|++++| .+++..|. .+++|++|++.++..... .+..+++|++|++++|....++. .+..+++|+
T Consensus 102 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 102 HGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 34455555555552 34422221 234555555554432221 24457778888888877766554 467788888
Q ss_pred eEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCC
Q 044382 464 SVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 464 ~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
+|++++| .++.++...+..+++|++|++++ +.++.++ +..+..+++|++|+++++|-
T Consensus 181 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 181 RLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALP---TEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCC---HHHHTTCTTCCEEECCSSCE
T ss_pred EEECCCC-cccccCHhHccCcccccEeeCCC-CcCCcCC---HHHcccCcccCEEeccCCCc
Confidence 8888885 56666555577888888888888 4677775 34677788888888888753
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-17 Score=152.11 Aligned_cols=202 Identities=19% Similarity=0.127 Sum_probs=111.7
Q ss_pred eeeEEEecCCCccccCc-cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
.|++|++++|.++.++. .|..+++|++|++++|.++.++. .+..+++|++|++++|......+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56666666666665543 46666666666666666665533 45666666666666653222223445666666666666
Q ss_pred CCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 183 NTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 183 ~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
+|. +..++. .++.+++|++|++..+.... ...+..+..+++|++|++++
T Consensus 109 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------------~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 109 ETN-LASLENFPIGHLKTLKELNVAHNLIQS-----------------------------FKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp TSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-----------------------------CCCCGGGGGCTTCCEEECCS
T ss_pred CCC-ccccCchhcccCCCCCEEECcCCccce-----------------------------ecCchhhccCCCCCEEECCC
Confidence 666 444332 45555555555432111100 00011244556666666666
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCc-EEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccce
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLE-QFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKH 339 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~ 339 (543)
|..+..+. ..+..+..++.+. .++++++....++..... ..+|+.|++++|......+ .+..+++|++
T Consensus 159 N~l~~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 159 NKIQSIYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp SCCCEECG--------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCCcCCH--------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccccccE
Confidence 55422111 1112222233333 677777776666554443 4478888888886543333 4577888888
Q ss_pred eeecCcc
Q 044382 340 LTVRGMS 346 (543)
Q Consensus 340 L~l~~~~ 346 (543)
|++++|+
T Consensus 229 L~l~~N~ 235 (276)
T 2z62_A 229 IWLHTNP 235 (276)
T ss_dssp EECCSSC
T ss_pred EEccCCc
Confidence 8888874
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=167.58 Aligned_cols=211 Identities=16% Similarity=0.169 Sum_probs=117.9
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 153 (543)
+|+.| ++++|.+.+ ..+..|..+++|++|+|++|.++..++ +..+++|++|+|++|.++.+|.. ++|+
T Consensus 35 ~L~~L---~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 35 NVKEL---DLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp GCCEE---ECCSSCCCC----CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred CccEE---EeeCCcCCC----CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 44444 477777775 222345577888888888888776544 77788888888888877776532 7788
Q ss_pred eeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceeccc
Q 044382 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISK 233 (543)
Q Consensus 154 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~ 233 (543)
+|++++|. +..++. ..+++|+.|++++|.+.+..|..++.+++|+.|++..+..
T Consensus 103 ~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----------------------- 156 (487)
T 3oja_A 103 TLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI----------------------- 156 (487)
T ss_dssp EEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC-----------------------
T ss_pred EEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC-----------------------
Confidence 88888763 443432 2467788888888873333345566666666664321100
Q ss_pred ccCcCCccchhhhcc-CCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCC
Q 044382 234 LENIKDIGDAKEARL-DGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFL 312 (543)
Q Consensus 234 l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 312 (543)
....+..+ ..+++|++|++++|..+. ......+++|+.|++++|....++..+.. ++
T Consensus 157 -------~~~~~~~l~~~l~~L~~L~Ls~N~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~ 214 (487)
T 3oja_A 157 -------DTVNFAELAASSDTLEHLNLQYNFIYD-------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQS--AA 214 (487)
T ss_dssp -------CEEEGGGGGGGTTTCCEEECTTSCCCE-------------EECCCCCTTCCEEECCSSCCCEECGGGGG--GT
T ss_pred -------CCcChHHHhhhCCcccEEecCCCcccc-------------ccccccCCCCCEEECCCCCCCCCCHhHcC--CC
Confidence 00001112 245566666666555421 12222345555555555555444444332 45
Q ss_pred CccEEEeecCCCCCCCC-CCCCCCccceeeecCc
Q 044382 313 NLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGM 345 (543)
Q Consensus 313 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 345 (543)
+|+.|++++|.... +| .+..+++|+.|++++|
T Consensus 215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred CccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 55555555554332 22 4444555555555554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=170.30 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=36.6
Q ss_pred cccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCC
Q 044382 126 LRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 126 l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
+++|++|+|++|.++.+ |..+..+++|++|++++|. +...+. ++.+++|++|++++|.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY 91 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc
Confidence 34677777777777766 3456677777777777663 322222 6666667777666665
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=150.46 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=88.9
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-cc
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DS 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~ 122 (543)
..++.++++|+++.|.+..... ..+..+++|++|. +++|.+.+ ++. ..|.++++|++|++++|.++.++ ..
T Consensus 24 ~~l~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~---l~~n~l~~-~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 24 DNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLD---LSRCEIQT-IED---GAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SSSCTTCCEEECTTCCCCEECT-TTTTTCTTCSEEE---CTTCCCCE-ECT---TTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCCCCCccEEECCCCcccccCH-hHhccccCCcEEE---CCCCcCCc-cCH---HHccCCcCCCEEECCCCccCccChhh
Confidence 3455667777777776654432 3455555555554 66666653 221 23446777777777777766554 45
Q ss_pred ccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCccccc-cccccccc
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTC 199 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~ 199 (543)
|..+++|++|++++|.++.++. .+..+++|++|++++|.... .+|..++.+++|++|++++|. +..++ ..+..+++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhh
Confidence 6777777777777777766643 46677777777777763222 245566677777777777776 44433 33444444
Q ss_pred cc
Q 044382 200 LQ 201 (543)
Q Consensus 200 L~ 201 (543)
|+
T Consensus 175 L~ 176 (276)
T 2z62_A 175 MP 176 (276)
T ss_dssp CT
T ss_pred cc
Confidence 43
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-18 Score=162.22 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=87.1
Q ss_pred ceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc--ccCcccc-------CcccccEEecCCCCcc-ccch
Q 044382 75 LRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY--ELPDSIG-------DLRYLRYLNLSGTVIR-TLPE 144 (543)
Q Consensus 75 L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~--~lp~~~~-------~l~~L~~L~L~~~~i~-~lp~ 144 (543)
.+.|..+++++|.+ .+|..++. .|++|++++|.++ .+|..+. ++++|++|++++|.++ .+|.
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCCceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 44455556777777 35555555 2888888888875 3555454 6889999999999888 5677
Q ss_pred hh--hcccccceeecCCCchhhhhhHHHhhh-----cccceeecCCCCCccccc-cccccccccccccc
Q 044382 145 SV--NKLYNLHTLLLEGCRRLKKLCADMGNL-----IKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCN 205 (543)
Q Consensus 145 ~~--~~l~~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~ 205 (543)
.+ ..+++|++|++++|. +..+|..++.+ ++|++|++++|. +..++ ..++.+++|+.|++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp CSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEEC
T ss_pred HHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEEC
Confidence 65 788899999998874 44447667777 889999999888 55544 56777777777754
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-17 Score=151.69 Aligned_cols=100 Identities=28% Similarity=0.395 Sum_probs=61.5
Q ss_pred cccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh-HHHhhhcccce
Q 044382 100 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHH 178 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~ 178 (543)
+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|. +..++ ..++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 336667777777777766654 3667777777777777777653 56677777777777763 43443 33566777777
Q ss_pred eecCCCCCccccccc-cccccccccc
Q 044382 179 LNDSNTDSLEEMPLG-IGKLTCLQTL 203 (543)
Q Consensus 179 L~l~~~~~~~~lp~~-l~~l~~L~~L 203 (543)
|++++|. +..++.. ++.+++|+.|
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred EECCCCc-CCccCHHHhccCCCCCEE
Confidence 7777776 4443322 3344444433
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-16 Score=145.58 Aligned_cols=113 Identities=27% Similarity=0.376 Sum_probs=68.4
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccchh-hhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~ 159 (543)
+++++.+.. +|..+++ .+++|++++|.++.++. .|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 22 ~~~~~~l~~-ip~~~~~------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 22 DCSSKKLTA-IPSNIPA------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp ECTTSCCSS-CCSCCCT------TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred EccCCCCCc-cCCCCCC------CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 366666653 3333333 66777777777776654 567777777777777777777554 35677777777777
Q ss_pred Cchhhhhh-HHHhhhcccceeecCCCCCcccccc-ccccccccccc
Q 044382 160 CRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTL 203 (543)
Q Consensus 160 ~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L 203 (543)
| .+..+| ..+..+++|++|++++|. +..++. .++.+++|+.|
T Consensus 95 n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 95 N-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp S-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred C-cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEE
Confidence 6 344444 335667777777777776 444332 23444444444
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=148.06 Aligned_cols=119 Identities=22% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCccccchhhhccc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLPESVNKLY 150 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~ 150 (543)
+++++.+ ++++|.+.. +|..++ +.+++|++++|.++.+ +..|..+++|++|++++|.++.+|.. ..++
T Consensus 9 l~~l~~l---~~~~~~l~~-ip~~~~------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~ 77 (290)
T 1p9a_G 9 VASHLEV---NCDKRNLTA-LPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLP 77 (290)
T ss_dssp STTCCEE---ECTTSCCSS-CCSCCC------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCT
T ss_pred cCCccEE---ECCCCCCCc-CCCCCC------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCC
Confidence 3444444 366666663 333333 3667777777776655 34567777777777777777766543 5667
Q ss_pred ccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccc-cccccccccccc
Q 044382 151 NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTL 203 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L 203 (543)
+|++|++++| .+..+|..+..+++|++|++++|. +..+| ..+..+++|+.|
T Consensus 78 ~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 78 VLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQEL 129 (290)
T ss_dssp TCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEE
T ss_pred cCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEE
Confidence 7777777765 455666556667777777777776 44444 234555555544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-17 Score=153.97 Aligned_cols=190 Identities=20% Similarity=0.255 Sum_probs=102.8
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
++++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4555666666666655554 35556666666666666655544 5556666666666552 44443 2555666666666
Q ss_pred CCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
++|. +..++. +..+++|+.|++..+... ... .+..+++|++|++++
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~------------------------------~~~--~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQIT------------------------------NIS--PLAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCC------------------------------CCG--GGGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccC------------------------------cCc--cccCCCCccEEEccC
Confidence 6665 444432 444455554432111000 000 033445566666655
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceee
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLT 341 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 341 (543)
|...+ ...+..+++|+.|++++|....++. +. .+++|++|++++|... .++.+..+++|++|+
T Consensus 161 n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 161 AQVSD-------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQIS-DVSPLANTSNLFIVT 223 (308)
T ss_dssp SCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCC-BCGGGTTCTTCCEEE
T ss_pred CcCCC-------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccC-ccccccCCCCCCEEE
Confidence 54421 1114556667777776666555544 22 3677777777777543 333466777777777
Q ss_pred ecCcc
Q 044382 342 VRGMS 346 (543)
Q Consensus 342 l~~~~ 346 (543)
+++|+
T Consensus 224 l~~N~ 228 (308)
T 1h6u_A 224 LTNQT 228 (308)
T ss_dssp EEEEE
T ss_pred ccCCe
Confidence 77763
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=140.78 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=119.5
Q ss_pred CccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCC
Q 044382 313 NLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVE 391 (543)
Q Consensus 313 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 391 (543)
++++|++++|......+ .+..+++|++|++++|..++.+.... ...+++|++|++.+++.++.+.... +.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~l~~~n~l~~i~~~~----f~ 102 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-----FYNLSKVTHIEIRNTRNLTYIDPDA----LK 102 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-----EESCTTCCEEEEEEETTCCEECTTS----EE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-----cCCCcCCcEEECCCCCCeeEcCHHH----hC
Confidence 45555555554322222 34455555555555553343333211 1224555555555433333322111 24
Q ss_pred CCCcccEEeeccCcCccCCCCC--CCCCcc---EEEEecccCcc----cccCCCCccc-eEEEcCCCCeeeecccCCCCC
Q 044382 392 RFPKLRELHILRCSKLQGTFPE--HLPALE---MLVIVECNELS----ISIASLPALC-KMEIGGCKKVVWRSATDHLGS 461 (543)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~~lp~--~l~~L~---~L~l~~~~~l~----~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~ 461 (543)
.+++|++|++++| .++ .+|. .+++|+ +|++.++..+. ..+..+++|+ .|++++|....++......++
T Consensus 103 ~l~~L~~L~l~~n-~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 103 ELPLLKFLGIFNT-GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK 180 (239)
T ss_dssp CCTTCCEEEEEEE-CCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCE
T ss_pred CCCCCCEEeCCCC-CCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCC
Confidence 5666666666663 555 3542 344454 66666652222 1355688899 999999988777765444589
Q ss_pred CceEEEcCCCCCcccCCCcCCCC-CCccEEecccCCCCccccccCccccccCCccceEeeccCCCC
Q 044382 462 QNSVVCRDTSNQVFLSGPLKPRI-PKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKL 526 (543)
Q Consensus 462 L~~L~l~~c~~l~~l~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l 526 (543)
|++|++++|..++.++...+..+ ++|++|++++ +.++.++ .. .+++|+.|++++++.+
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~----~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALP----SK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCC----CT--TCTTCSEEECTTC---
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCC----hh--HhccCceeeccCccCC
Confidence 99999999756889988888999 9999999999 6899885 22 6789999999998764
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-15 Score=139.70 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=85.8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCc
Q 044382 289 LEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCL 367 (543)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 367 (543)
.+.++++++....+|..+ .+++++|++++|......+ .+..+++|++|++++| .++.+.... ...+++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~-----~~~l~~L 87 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI-----FKELKNL 87 (270)
T ss_dssp TTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT-----TSSCTTC
T ss_pred CCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh-----hcCCCCC
Confidence 445555555544444322 2355666666554432222 4555666666666555 222222111 1235555
Q ss_pred CeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCccc---ccCCCCccce
Q 044382 368 ETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSI---SIASLPALCK 441 (543)
Q Consensus 368 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~ 441 (543)
++|++.++. +..+... . +..+++|++|++++ +.+++..+. .+++|++|++.++..... .+..+++|+.
T Consensus 88 ~~L~l~~n~-l~~~~~~-~---~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 88 ETLWVTDNK-LQALPIG-V---FDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp CEEECCSSC-CCCCCTT-T---TTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEECCCCc-CCcCCHh-H---cccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 666555532 2222111 1 34566666666666 345522221 222333333333221110 1233455555
Q ss_pred EEEcCCCCeeeec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEeccc
Q 044382 442 MEIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINN 494 (543)
Q Consensus 442 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~ 494 (543)
|++++|....++. .+..+++|++|++++| .++.++...+..+++|+.|++++
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 5555555444332 3444555555555553 44555554455555555555555
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-17 Score=162.51 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=76.7
Q ss_pred ccCCCccccccccccccccccC--CeeeEEEecCCCccccCccccCcccccEEecCCCCccc--cchhhhcccccceeec
Q 044382 82 RLSNGFLSGYLACSILPKLFKL--QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT--LPESVNKLYNLHTLLL 157 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l--~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l 157 (543)
++++|.+.. ..+ ..+ +.+++|++++|.+...+..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 53 ~l~~~~~~~----~~~---~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 53 DLTGKNLHP----DVT---GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp ECTTCBCCH----HHH---HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred ccccccCCH----HHH---HhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 366665542 222 255 67888888888877665556678888888888887763 6777778888888888
Q ss_pred CCCchhhhhhHHHhhhcccceeecCCCCCccc--cccccccccccccc
Q 044382 158 EGCRRLKKLCADMGNLIKLHHLNDSNTDSLEE--MPLGIGKLTCLQTL 203 (543)
Q Consensus 158 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--lp~~l~~l~~L~~L 203 (543)
++|......+..++.+++|++|++++|..+.. ++..+..+++|++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 88754456666677788888888888732332 33334444444444
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=145.67 Aligned_cols=218 Identities=15% Similarity=0.113 Sum_probs=107.7
Q ss_pred EEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCe
Q 044382 292 FGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLET 369 (543)
Q Consensus 292 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~ 369 (543)
++.+++..+++|..+ .+++++|+|++|.. +.++ .+..+++|++|+|++|...+.++... ...++++.+
T Consensus 14 v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-----f~~L~~l~~ 83 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL----PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-----FSNLPKLHE 83 (350)
T ss_dssp EEEESTTCCSCCTTC----CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTS-----BCSCTTCCE
T ss_pred EEecCCCCCccCcCc----CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhH-----hhcchhhhh
Confidence 444444444444322 23455555555533 2232 34555555555555554333333221 112444444
Q ss_pred eeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC----CCCCccEEEEecccCcccc----cCC-CCccc
Q 044382 370 LRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE----HLPALEMLVIVECNELSIS----IAS-LPALC 440 (543)
Q Consensus 370 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~~~~l~~~----~~~-~~~L~ 440 (543)
+...+++.+..+.... +..+++|++|++++ ++++ .+|. ...++..|.+.++..+... +.. ...++
T Consensus 84 ~l~~~~N~l~~l~~~~----f~~l~~L~~L~l~~-n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 84 IRIEKANNLLYINPEA----FQNLPNLQYLLISN-TGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp EEEEEETTCCEECTTS----BCCCTTCCEEEEEE-ECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred hhcccCCcccccCchh----hhhccccccccccc-cccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 3333333333332211 24555666666655 3454 3331 1224445555554433311 111 23456
Q ss_pred eEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEee
Q 044382 441 KMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLI 520 (543)
Q Consensus 441 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l 520 (543)
.|++++|....++......++|++|++.+++.++.+|..+|+.+++|++|++++ +++++++. ..+.+|+.|.+
T Consensus 158 ~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~------~~~~~L~~L~~ 230 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPS------YGLENLKKLRA 230 (350)
T ss_dssp EEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCS------SSCTTCCEEEC
T ss_pred hhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccCh------hhhccchHhhh
Confidence 666666666665555545566666666666666666666666666666666666 46666641 12445566666
Q ss_pred ccCCCCcccchh
Q 044382 521 TSCPKLQSLVAE 532 (543)
Q Consensus 521 ~~c~~l~~~~~~ 532 (543)
.+|.+++.+|..
T Consensus 231 l~~~~l~~lP~l 242 (350)
T 4ay9_X 231 RSTYNLKKLPTL 242 (350)
T ss_dssp TTCTTCCCCCCT
T ss_pred ccCCCcCcCCCc
Confidence 666666666643
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=139.43 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=125.4
Q ss_pred cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCC
Q 044382 283 LKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSP 361 (543)
Q Consensus 283 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 361 (543)
+..+++++.++++++....+|..+ .++++.|++++|......+ .+..+++|++|++++|. ++.+.. .
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-------D 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-------C
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC-------C
Confidence 344567777777777766666543 2477888888776543333 56777888888887773 433321 1
Q ss_pred CCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccce
Q 044382 362 IPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCK 441 (543)
Q Consensus 362 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~ 441 (543)
..+++|++|+++++ .++.+.. ....+++|++|++++ ++++ .+|. ..+..+++|++
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~~L~l~~-N~l~-~l~~-----------------~~~~~l~~L~~ 128 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPL-----LGQTLPALTVLDVSF-NRLT-SLPL-----------------GALRGLGELQE 128 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCC-----CTTTCTTCCEEECCS-SCCC-CCCS-----------------STTTTCTTCCE
T ss_pred CCCCcCCEEECCCC-cCCcCch-----hhccCCCCCEEECCC-CcCc-ccCH-----------------HHHcCCCCCCE
Confidence 34677777777764 3332221 145677778888877 4666 3431 13444566777
Q ss_pred EEEcCCCCeeeec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEee
Q 044382 442 MEIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLI 520 (543)
Q Consensus 442 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l 520 (543)
|++++|....++. .+..+++|++|++++| .++.+|...+..+++|++|++++ ++++.+ |..+...++|+.|++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~i----p~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQE-NSLYTI----PKGFFGSHLLPFAFL 202 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCS-SCCCCC----CTTTTTTCCCSEEEC
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCC-CcCCcc----ChhhcccccCCeEEe
Confidence 7777766655443 3456777777777774 66777766667777777777777 467777 445556667777777
Q ss_pred ccCC
Q 044382 521 TSCP 524 (543)
Q Consensus 521 ~~c~ 524 (543)
+++|
T Consensus 203 ~~Np 206 (290)
T 1p9a_G 203 HGNP 206 (290)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=152.63 Aligned_cols=204 Identities=18% Similarity=0.141 Sum_probs=106.2
Q ss_pred CCeeeEEEecCCCccc-cCccc--cCcccccEEecCCCCcccc-c----hhhhcccccceeecCCCchhhhhhHHHhhhc
Q 044382 103 LQRLRVFSLRGYHIYE-LPDSI--GDLRYLRYLNLSGTVIRTL-P----ESVNKLYNLHTLLLEGCRRLKKLCADMGNLI 174 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~-lp~~~--~~l~~L~~L~L~~~~i~~l-p----~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~ 174 (543)
+++|++|++++|.+.. .|..+ ..+++|++|++++|.++.. | ..+..+++|++|++++|......+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456667776666553 34444 6666677777776666632 2 2234566677777766643333334456666
Q ss_pred ccceeecCCCCCccc--ccc--ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCC
Q 044382 175 KLHHLNDSNTDSLEE--MPL--GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDG 250 (543)
Q Consensus 175 ~L~~L~l~~~~~~~~--lp~--~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~ 250 (543)
+|++|++++|.+.+. ++. .++.+++|++|++..+... .........+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------------------------~l~~~~~~l~~~ 222 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------------------------TPTGVCAALAAA 222 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------------------------CHHHHHHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------------------------chHHHHHHHHhc
Confidence 777777776663321 221 1244555555533211100 000000011344
Q ss_pred ccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCC
Q 044382 251 KKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPS 330 (543)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 330 (543)
+++|++|++++|..+...+. ....+..+++|++|++++|.+..+|..+. ++|+.|++++|... .++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~--------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----~~L~~L~Ls~N~l~-~~~~ 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNP--------SAPRCMWSSALNSLNLSFAGLEQVPKGLP----AKLRVLDLSSNRLN-RAPQ 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCS--------CCSSCCCCTTCCCEECCSSCCCSCCSCCC----SCCSCEECCSCCCC-SCCC
T ss_pred CCCCCEEECCCCCCCccchh--------hHHhccCcCcCCEEECCCCCCCchhhhhc----CCCCEEECCCCcCC-CCch
Confidence 56677777766665332110 01112223567777777776666655432 46777777776543 3344
Q ss_pred CCCCCccceeeecCcc
Q 044382 331 VGQLPSLKHLTVRGMS 346 (543)
Q Consensus 331 ~~~l~~L~~L~l~~~~ 346 (543)
+..+++|++|++++|+
T Consensus 290 ~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTSCCCCSCEECSSTT
T ss_pred hhhCCCccEEECcCCC
Confidence 5666777777776663
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=145.71 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=89.8
Q ss_pred cccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhccccee
Q 044382 100 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 179 (543)
+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+..+++|++|++++| .+..++. +..+++|++|
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEE
Confidence 4456666666666666655544 566666666666666666553 3556666666666665 3444443 5566666666
Q ss_pred ecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeee
Q 044382 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259 (543)
Q Consensus 180 ~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 259 (543)
++++|. +..++. ++.+++|+.|++..+... .. .. +..+++|++|++
T Consensus 135 ~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~------------------------------~~-~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 135 YLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS------------------------------DL-TP-LANLSKLTTLKA 180 (308)
T ss_dssp ECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC------------------------------CC-GG-GTTCTTCCEEEC
T ss_pred ECCCCc-cCcCcc-ccCCCCccEEEccCCcCC------------------------------CC-hh-hcCCCCCCEEEC
Confidence 666665 444433 444555555432111000 00 00 344455666666
Q ss_pred eeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCC
Q 044382 260 NWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGM 324 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 324 (543)
++|...+. ..+..+++|+.|++++|....++. +. .+++|+.|++++|..
T Consensus 181 ~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 181 DDNKISDI-------------SPLASLPNLIEVHLKNNQISDVSP-LA--NTSNLFIVTLTNQTI 229 (308)
T ss_dssp CSSCCCCC-------------GGGGGCTTCCEEECTTSCCCBCGG-GT--TCTTCCEEEEEEEEE
T ss_pred CCCccCcC-------------hhhcCCCCCCEEEccCCccCcccc-cc--CCCCCCEEEccCCee
Confidence 55554211 114445666666666666555443 22 366677777766644
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=142.86 Aligned_cols=123 Identities=27% Similarity=0.460 Sum_probs=87.6
Q ss_pred hhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchh-hh
Q 044382 69 LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPES-VN 147 (543)
Q Consensus 69 ~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~ 147 (543)
...+++++.|. +.+|.+.. ++.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|.. +.
T Consensus 37 ~~~l~~L~~L~---l~~~~i~~------~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQII---ANNSDIKS------VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp HHHHTTCCEEE---CTTSCCCC------CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccccceeeee---eCCCCccc------ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhc
Confidence 33455666665 77776653 234568888999999998888764 578888999999999988877544 67
Q ss_pred cccccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCccccccc-cccccccccc
Q 044382 148 KLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQTL 203 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L 203 (543)
.+++|++|++++|. +..++ ..++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 107 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 107 KLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEE
Confidence 88999999998874 44444 446788899999998887 5555432 3444444444
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=139.91 Aligned_cols=131 Identities=15% Similarity=0.305 Sum_probs=58.4
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCc-cccccccccccccccCCeeeEEEecC-CCccccC-cc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGF-LSGYLACSILPKLFKLQRLRVFSLRG-YHIYELP-DS 122 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~-~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~~lp-~~ 122 (543)
++.++++|++..|.+..... ..+..+++|++|. +++|. +.. +++. .|.++++|++|++++ |.++.++ ..
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~---l~~n~~l~~-i~~~---~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPS-HAFSNLPNISRIY---VSIDVTLQQ-LESH---SFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CCTTCCEEEEESCCCSEECT-TTTTTCTTCCEEE---EECCSSCCE-ECTT---TEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCcccEEEEeCCcceEECH-HHccCCCCCcEEe---CCCCCCcce-eCHh---HcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 44455555555555543322 2333344444443 44443 332 1111 222455555555554 4454443 23
Q ss_pred ccCcccccEEecCCCCccccchhhhcccccc---eeecCCCchhhhhhH-HHhhhcccc-eeecCCCC
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPESVNKLYNLH---TLLLEGCRRLKKLCA-DMGNLIKLH-HLNDSNTD 185 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~---~L~l~~~~~~~~l~~-~~~~l~~L~-~L~l~~~~ 185 (543)
|..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|. .+..+++|+ +|++++|.
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 4455555555555555554443 44444444 555554423333332 244444555 55554444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-16 Score=153.91 Aligned_cols=244 Identities=19% Similarity=0.182 Sum_probs=167.1
Q ss_pred CCCceEEEeeccccCCccchhhhhcC--CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc--cCcc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDI--QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE--LPDS 122 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--lp~~ 122 (543)
+..++++++..+.+. ...+..+ ++++.|. +.+|.+.+. ++.+..+++|++|++++|.++. +|..
T Consensus 46 ~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~---l~~n~l~~~-----~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFR---CPRSFMDQP-----LAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp STTSSEEECTTCBCC----HHHHHHHHHTTCSEEE---CTTCEECSC-----CCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred chhheeeccccccCC----HHHHHhhhhccceEEE---cCCcccccc-----chhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 456889999988764 1334444 6777776 888888763 2335578999999999999873 6777
Q ss_pred ccCcccccEEecCCCCcc-ccchhhhcccccceeecCCCchhh--hhhHHHhhhcccceeecCCC-CCccc--ccccccc
Q 044382 123 IGDLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLK--KLCADMGNLIKLHHLNDSNT-DSLEE--MPLGIGK 196 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~-~~~~~--lp~~l~~ 196 (543)
+..+++|++|++++|.++ ..|..+..+++|++|++++|..+. .++..+..+++|++|++++| . +.. ++..+..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~ 192 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAH 192 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHh
Confidence 899999999999999988 568889999999999999985554 36777889999999999999 6 543 5556777
Q ss_pred cc-ccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCccccc
Q 044382 197 LT-CLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAET 275 (543)
Q Consensus 197 l~-~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (543)
++ +|++|++..+.. .......+..+..+++|++|++++|.. .
T Consensus 193 l~~~L~~L~l~~~~~---------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~----------l 235 (336)
T 2ast_B 193 VSETITQLNLSGYRK---------------------------NLQKSDLSTLVRRCPNLVHLDLSDSVM----------L 235 (336)
T ss_dssp SCTTCCEEECCSCGG---------------------------GSCHHHHHHHHHHCTTCSEEECTTCTT----------C
T ss_pred cccCCCEEEeCCCcc---------------------------cCCHHHHHHHHhhCCCCCEEeCCCCCc----------C
Confidence 77 788775432210 000012222355677888888877652 1
Q ss_pred HHHHhcccCCCCCCcEEEEeccCCCCCCC--CCCCCCCCCccEEEeecCCCCCCCCCCCCC-CccceeeecCc
Q 044382 276 EKDVLDMLKPHKNLEQFGICGYGGTKFPT--WLGDSSFLNLVTLKFEDCGMCTALPSVGQL-PSLKHLTVRGM 345 (543)
Q Consensus 276 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-~~L~~L~l~~~ 345 (543)
....+..+..+++|+.|+++++....... .+. .+++|+.|++++| .... .+..+ ..++.|++++|
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG--EIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCS 303 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCC
T ss_pred CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh--cCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecc
Confidence 11234456667888888888875221111 233 3788999999888 2111 12223 34666677655
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=145.35 Aligned_cols=225 Identities=15% Similarity=0.181 Sum_probs=143.3
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeE-EEecCCCcccc-Cc
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRV-FSLRGYHIYEL-PD 121 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~-L~Ls~~~l~~l-p~ 121 (543)
..++.++++|+++.|.+..+.. .+|..+++|++|. +++|.+.+.++..+|. +++++.. +.+++|+++.+ |.
T Consensus 26 ~~l~~~l~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~---Ls~N~i~~~i~~~~f~---~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 26 SDLPRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIE---ISQNDVLEVIEADVFS---NLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCCTTCSEEEEESCCCSEECT-TSSTTCTTCCEEE---EECCTTCCEECTTSBC---SCTTCCEEEEEEETTCCEECTT
T ss_pred cCcCCCCCEEEccCCcCCCcCH-HHHcCCCCCCEEE---CcCCCCCCccChhHhh---cchhhhhhhcccCCcccccCch
Confidence 4566788888888888765543 4566666666664 7888776655555555 6766554 55666777777 45
Q ss_pred cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHH-Hhhh-cccceeecCCCCCcccccccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCAD-MGNL-IKLHHLNDSNTDSLEEMPLGIGKLT 198 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l-~~L~~L~l~~~~~~~~lp~~l~~l~ 198 (543)
.|..+++|++|++++|.++.+|. .+....++..+++.++..+..++.. +..+ ..+++|++++|. ++.+|.+.....
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcccc
Confidence 67888888888888888887754 3446667777887766566666543 4444 357778888887 666766554444
Q ss_pred ccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHH
Q 044382 199 CLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKD 278 (543)
Q Consensus 199 ~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (543)
+|++|.+... ..........|.+
T Consensus 178 ~L~~l~l~~~-----------------------------n~l~~i~~~~f~~---------------------------- 200 (350)
T 4ay9_X 178 QLDELNLSDN-----------------------------NNLEELPNDVFHG---------------------------- 200 (350)
T ss_dssp EEEEEECTTC-----------------------------TTCCCCCTTTTTT----------------------------
T ss_pred chhHHhhccC-----------------------------CcccCCCHHHhcc----------------------------
Confidence 5544421100 0000000011333
Q ss_pred HhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecC
Q 044382 279 VLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRG 344 (543)
Q Consensus 279 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 344 (543)
+++|+.|++++|.+..+|.. .+.+|+.|.+.++...+.+|.+..+++|+.+++.+
T Consensus 201 -------l~~L~~LdLs~N~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 -------ASGPVILDISRTRIHSLPSY----GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp -------EECCSEEECTTSCCCCCCSS----SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred -------CcccchhhcCCCCcCccChh----hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 44555555555555666653 25578888888877778888888888888888865
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-16 Score=157.89 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=144.8
Q ss_pred hhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc----cCccc-------cCcccccEEecC
Q 044382 67 EDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE----LPDSI-------GDLRYLRYLNLS 135 (543)
Q Consensus 67 ~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~----lp~~~-------~~l~~L~~L~L~ 135 (543)
..+..+++|++|. +++|.+....+..+...+..+++|++|+|++|.+.. +|..+ ..+++|++|+|+
T Consensus 26 ~~l~~~~~L~~L~---L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 26 AVLLEDDSVKEIV---LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHHHCSCCCEEE---CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHhcCCCccEEE---CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4445566666664 888877764444444556678888888888875442 33333 678888888888
Q ss_pred CCCccc-----cchhhhcccccceeecCCCchhhh----hhHHHhhh---------cccceeecCCCCCc-cccc---cc
Q 044382 136 GTVIRT-----LPESVNKLYNLHTLLLEGCRRLKK----LCADMGNL---------IKLHHLNDSNTDSL-EEMP---LG 193 (543)
Q Consensus 136 ~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l---------~~L~~L~l~~~~~~-~~lp---~~ 193 (543)
+|.++. +|..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+. ..+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888775 677788888888888888754322 22334444 78888888888833 2333 34
Q ss_pred cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCccc
Q 044382 194 IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEA 273 (543)
Q Consensus 194 l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (543)
+..+++|+.|++..+..... ......+..+..+++|++|++++|..+ .
T Consensus 183 l~~~~~L~~L~L~~n~l~~~-------------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~-------~ 230 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE-------------------------GIEHLLLEGLAYCQELKVLDLQDNTFT-------H 230 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH-------------------------HHHHHHHTTGGGCTTCCEEECCSSCCH-------H
T ss_pred HHhCCCcCEEECcCCCCCHh-------------------------HHHHHHHHHhhcCCCccEEECcCCCCC-------c
Confidence 55566666664322211000 000011113556677777777666541 0
Q ss_pred ccHHHHhcccCCCCCCcEEEEeccCCCCC-----CCCCCCCCCCCccEEEeecCCCCC----CCC-CC-CCCCccceeee
Q 044382 274 ETEKDVLDMLKPHKNLEQFGICGYGGTKF-----PTWLGDSSFLNLVTLKFEDCGMCT----ALP-SV-GQLPSLKHLTV 342 (543)
Q Consensus 274 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~----~~~-~~-~~l~~L~~L~l 342 (543)
.........+..+++|+.|++++|.+... +..+....+++|++|++++|.... .++ .+ ..+++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 01123344566677777777777765432 222211126678888887776544 244 33 45678888888
Q ss_pred cCcc
Q 044382 343 RGMS 346 (543)
Q Consensus 343 ~~~~ 346 (543)
++|.
T Consensus 311 ~~N~ 314 (386)
T 2ca6_A 311 NGNR 314 (386)
T ss_dssp TTSB
T ss_pred cCCc
Confidence 7774
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-17 Score=161.44 Aligned_cols=241 Identities=16% Similarity=0.125 Sum_probs=162.6
Q ss_pred ccccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCcc----ccchhh-------hcccccceeecC
Q 044382 95 SILPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIR----TLPESV-------NKLYNLHTLLLE 158 (543)
Q Consensus 95 ~~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~----~lp~~~-------~~l~~L~~L~l~ 158 (543)
.++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456667789999999999999874 3445788999999999998554 335444 688999999999
Q ss_pred CCchhh----hhhHHHhhhcccceeecCCCCCccccccc----cccc---------cccccccceEecCCCCCChhhhcc
Q 044382 159 GCRRLK----KLCADMGNLIKLHHLNDSNTDSLEEMPLG----IGKL---------TCLQTLCNFVVGKDSGSGLRELKS 221 (543)
Q Consensus 159 ~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~lp~~----l~~l---------~~L~~L~~~~~~~~~~~~~~~l~~ 221 (543)
+|.... .+|..+..+++|++|++++|.+....+.. +..+ ++|++|++..+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n------------- 169 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN------------- 169 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-------------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-------------
Confidence 985444 47778899999999999999943222222 2222 45554432211
Q ss_pred ccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhc-ccCCCCCCcEEEEeccCC-
Q 044382 222 LIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLD-MLKPHKNLEQFGICGYGG- 299 (543)
Q Consensus 222 l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~- 299 (543)
.........+...+..+++|++|++++|..+ .. ....... .+..+++|+.|++++|.+
T Consensus 170 -------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~------~~-g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 170 -------------RLENGSMKEWAKTFQSHRLLHTVKMVQNGIR------PE-GIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp -------------CCTGGGHHHHHHHHHHCTTCCEEECCSSCCC------HH-HHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred -------------CCCcHHHHHHHHHHHhCCCcCEEECcCCCCC------Hh-HHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 1100111111233667789999999888752 00 1111233 778899999999999986
Q ss_pred ----CCCCCCCCCCCCCCccEEEeecCCCCCC----CC-CC--CCCCccceeeecCccceee-----eCccccCCCCCCC
Q 044382 300 ----TKFPTWLGDSSFLNLVTLKFEDCGMCTA----LP-SV--GQLPSLKHLTVRGMSRVNR-----LGSKFYGDDSPIP 363 (543)
Q Consensus 300 ----~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~--~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~ 363 (543)
..++..+.. +++|++|++++|..... ++ .+ +.+++|++|++++|. ++. ++... ...
T Consensus 230 ~~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-----~~~ 301 (386)
T 2ca6_A 230 HLGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-----DEK 301 (386)
T ss_dssp HHHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-----HHH
T ss_pred cHHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-----Hhc
Confidence 334554544 78999999999975432 22 33 458999999999984 333 22221 123
Q ss_pred CCCcCeeeccCcc
Q 044382 364 FPCLETLRFEDLQ 376 (543)
Q Consensus 364 ~~~L~~L~l~~~~ 376 (543)
+++|++|++.++.
T Consensus 302 l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 302 MPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTSB
T ss_pred CCCceEEEccCCc
Confidence 7999999999864
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=143.29 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=73.2
Q ss_pred ccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 101 FKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 101 ~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++| .+..++. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 367788888888888887754 7788888888888888888766 888888888888887 4555554 78888888888
Q ss_pred cCCCCCcccccccccccccccccc
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
+++|. +..+ ..+..+++|+.|+
T Consensus 119 L~~n~-i~~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 119 LEHNG-ISDI-NGLVHLPQLESLY 140 (291)
T ss_dssp CTTSC-CCCC-GGGGGCTTCCEEE
T ss_pred CCCCc-CCCC-hhhcCCCCCCEEE
Confidence 88887 5544 2344555555553
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=140.88 Aligned_cols=227 Identities=14% Similarity=0.044 Sum_probs=153.0
Q ss_pred CceEEEeeccccCCccc--hhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-C----c
Q 044382 49 NLRHLSYIPEYFDGGKR--FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-P----D 121 (543)
Q Consensus 49 ~~~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p----~ 121 (543)
.++++.+....+..... +..+..+++|+.|. +++|.+.+..+..++. ..+++|++|++++|.++.. + .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~---l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELT---LEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEE---EESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEE---eeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHH
Confidence 46788887766532211 11222345566664 8999888754444431 5899999999999998853 2 2
Q ss_pred cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhh--hhHH--HhhhcccceeecCCCCCccccccc---
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKK--LCAD--MGNLIKLHHLNDSNTDSLEEMPLG--- 193 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--l~~~--~~~l~~L~~L~l~~~~~~~~lp~~--- 193 (543)
.+..+++|++|++++|.++.+| ..+..+++|++|++++|...+. ++.. ++.+++|++|++++|. ++.++..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH
Confidence 3467999999999999999774 6788999999999999854432 3322 3689999999999999 6655542
Q ss_pred -cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcc
Q 044382 194 -IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTE 272 (543)
Q Consensus 194 -l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 272 (543)
++.+++|++|++..+.... . .... ...+..+++|++|++++|..+..+
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~------------------------~--~p~~-~~~~~~~~~L~~L~Ls~N~l~~lp---- 267 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRA------------------------T--VNPS-APRCMWSSALNSLNLSFAGLEQVP---- 267 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCC------------------------C--CCSC-CSSCCCCTTCCCEECCSSCCCSCC----
T ss_pred HHhcCCCCCEEECCCCCCCc------------------------c--chhh-HHhccCcCcCCEEECCCCCCCchh----
Confidence 4566777777543222110 0 0000 001233478999999988875332
Q ss_pred cccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCC
Q 044382 273 AETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMC 325 (543)
Q Consensus 273 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 325 (543)
..+ .++|+.|++++|....+|. +. .+++|+.|++++|...
T Consensus 268 --------~~~--~~~L~~L~Ls~N~l~~~~~-~~--~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 268 --------KGL--PAKLRVLDLSSNRLNRAPQ-PD--ELPEVDNLTLDGNPFL 307 (310)
T ss_dssp --------SCC--CSCCSCEECCSCCCCSCCC-TT--SCCCCSCEECSSTTTS
T ss_pred --------hhh--cCCCCEEECCCCcCCCCch-hh--hCCCccEEECcCCCCC
Confidence 122 3799999999999887655 33 4889999999998653
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=134.99 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=123.2
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD- 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~- 121 (543)
+..++.++++|++..|.+..... ..+..+++|++|. +++|.+.+ ++ +..|..+++|++|++++|.++.+|.
T Consensus 30 p~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~---L~~n~l~~-~~---~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 30 PSGIPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLN---LDYNQLQT-LS---AGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CSCCCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEE---CTTSCCCC-CC---TTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCCCCCCEEEccCCCcCccCH-hHhcCcccCCEEE---CCCCcCCc-cC---HhHhccCCcCCEEECCCCcccccChh
Confidence 34567889999999998876654 5566777777775 88898886 22 2334589999999999999988764
Q ss_pred cccCcccccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcccccc-cccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLT 198 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~ 198 (543)
.|..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|. .+..++
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 179 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCC
Confidence 578999999999999999988665 578999999999997 5556654 58889999999999999 566654 578888
Q ss_pred ccccccceEec
Q 044382 199 CLQTLCNFVVG 209 (543)
Q Consensus 199 ~L~~L~~~~~~ 209 (543)
+|+.|++..+.
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 88888655443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=130.63 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=35.6
Q ss_pred eeeEEEecCCCccccC-ccccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhh-HHHhhhcccceeec
Q 044382 105 RLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLND 181 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l 181 (543)
.+++|++++|.++.++ ..|..+++|++|++++|.++.++ ..+..+++|++|++++|. +..+| ..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEc
Confidence 4455555555544442 23445555555555555554442 224444444444444442 22222 22344444444444
Q ss_pred CCCC
Q 044382 182 SNTD 185 (543)
Q Consensus 182 ~~~~ 185 (543)
++|.
T Consensus 115 ~~N~ 118 (251)
T 3m19_A 115 GGNQ 118 (251)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 4444
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=126.84 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=117.2
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-cCccccC
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-LPDSIGD 125 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~~~~ 125 (543)
..++++|++..|.+... ..+..+++|++|. +++|.+.. ++.+..+++|++|++++|.++. .|..++.
T Consensus 43 l~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~---l~~n~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL---TGIEYAHNIKDLT---INNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHTCCEEEEESSCCSCC---TTGGGCTTCSEEE---EESCCCSC------CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred cCCccEEeccCCCccCh---HHHhcCCCCCEEE---ccCCCCCc------chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 36789999999988643 3466677777776 77775543 3466689999999999999885 5777899
Q ss_pred cccccEEecCCCCccc-cchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccccccc
Q 044382 126 LRYLRYLNLSGTVIRT-LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 126 l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
+++|++|++++|.++. .|..+..+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEE
Confidence 9999999999999985 57888999999999999986577777 48899999999999998 66666 678888888886
Q ss_pred ceE
Q 044382 205 NFV 207 (543)
Q Consensus 205 ~~~ 207 (543)
+..
T Consensus 188 l~~ 190 (197)
T 4ezg_A 188 AFS 190 (197)
T ss_dssp ECB
T ss_pred eeC
Confidence 543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-15 Score=152.99 Aligned_cols=172 Identities=20% Similarity=0.197 Sum_probs=107.6
Q ss_pred cccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhccccee
Q 044382 100 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 179 (543)
+..+++|+.|++++|.+..++ .+..+++|++|+|++|.++.+|. +..+++|+.|++++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 346677788888888777765 47778888888888887777765 777888888888876 455555 47777888888
Q ss_pred ecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeee
Q 044382 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259 (543)
Q Consensus 180 ~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 259 (543)
++++|. +..++ .+..+++|+.|++..+.. . . . ..+..+++|+.|++
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l---------------~---------~---l-----~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKI---------------T---------D---I-----TVLSRLTKLDTLSL 160 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEECCSSCC---------------C---------C---C-----GGGGSCTTCSEEEC
T ss_pred EecCCC-CCCCc-cccCCCccCEEECCCCcc---------------C---------C---c-----hhhcccCCCCEEEC
Confidence 888777 54443 355556666554321110 0 0 0 11555667777777
Q ss_pred eeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCC
Q 044382 260 NWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMC 325 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 325 (543)
++|..... ..+..+++|+.|++++|.+..++. +. .+++|+.|++++|...
T Consensus 161 s~N~l~~~-------------~~l~~l~~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDI-------------VPLAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCC-------------GGGTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEECCSEEEE
T ss_pred cCCcCCCc-------------hhhccCCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEccCCcCc
Confidence 76665211 115556677777777766555432 33 2666777777666543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-15 Score=147.04 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=50.2
Q ss_pred cCCCccccccccccccccccCC-eeeEEEecCCCcccc-CccccCc-----ccccEEecCCCCcccc-chhh----hcc-
Q 044382 83 LSNGFLSGYLACSILPKLFKLQ-RLRVFSLRGYHIYEL-PDSIGDL-----RYLRYLNLSGTVIRTL-PESV----NKL- 149 (543)
Q Consensus 83 l~~n~~~~~~~~~~~~~~~~l~-~L~~L~Ls~~~l~~l-p~~~~~l-----~~L~~L~L~~~~i~~l-p~~~----~~l- 149 (543)
+++|.+.+..+..+...+.+++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.++.. +..+ ..+
T Consensus 29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 108 (362)
T 3goz_A 29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC
Confidence 6666555433223334444555 566666666665543 2233332 5666666666665543 2222 222
Q ss_pred cccceeecCCCchhhhhhHHHh----h-hcccceeecCCCC
Q 044382 150 YNLHTLLLEGCRRLKKLCADMG----N-LIKLHHLNDSNTD 185 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~~~----~-l~~L~~L~l~~~~ 185 (543)
++|++|++++|......+..+. . .++|++|++++|.
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 5666666666532222222222 2 2466666666665
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-15 Score=143.62 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=80.0
Q ss_pred CCCCCceEEEeeccccCCccc---hhhhhcCC-CceEEeecccCCCccccccccccccccccC-CeeeEEEecCCCcccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKR---FEDLYDIQ-HLRTFLPVRLSNGFLSGYLACSILPKLFKL-QRLRVFSLRGYHIYEL 119 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~---~~~~~~~~-~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l-~~L~~L~Ls~~~l~~l 119 (543)
..+.++++|+++.|.+..... ...+..++ +|++|. +++|.+.+..+..+...+... ++|++|++++|.++..
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~---Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLN---LSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEE---CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEE---CcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 445567777777777654332 13444455 555554 777777653333333222232 7777777777777654
Q ss_pred Cc-c----ccCc-ccccEEecCCCCccccch-hhh----c-ccccceeecCCCchhh----hhhHHHhhhc-ccceeecC
Q 044382 120 PD-S----IGDL-RYLRYLNLSGTVIRTLPE-SVN----K-LYNLHTLLLEGCRRLK----KLCADMGNLI-KLHHLNDS 182 (543)
Q Consensus 120 p~-~----~~~l-~~L~~L~L~~~~i~~lp~-~~~----~-l~~L~~L~l~~~~~~~----~l~~~~~~l~-~L~~L~l~ 182 (543)
+. . +..+ ++|++|++++|.++..+. .+. . .++|++|++++|.... .++..+..++ +|++|+++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 32 2 3344 677777777777775532 222 2 2577777777764331 3444455554 77777777
Q ss_pred CCC
Q 044382 183 NTD 185 (543)
Q Consensus 183 ~~~ 185 (543)
+|.
T Consensus 176 ~n~ 178 (362)
T 3goz_A 176 GNN 178 (362)
T ss_dssp TSC
T ss_pred CCC
Confidence 777
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.9e-14 Score=119.93 Aligned_cols=137 Identities=26% Similarity=0.259 Sum_probs=92.9
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-cCccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-LPDSI 123 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~~ 123 (543)
..+.++++|++.+|.+........+..+++|+.|. +++|.+.+. ..+..+++|++|++++|.++. +|..+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~---l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLS---LINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEE---EESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEe---CcCCCCCCh------hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 44577888888888765111112234555555554 777776641 455577888888888888776 56666
Q ss_pred cCcccccEEecCCCCccccc--hhhhcccccceeecCCCchhhhhhH----HHhhhcccceeecCCCCCcccccc
Q 044382 124 GDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHTLLLEGCRRLKKLCA----DMGNLIKLHHLNDSNTDSLEEMPL 192 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~lp~ 192 (543)
..+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++.+|. ..++|.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 67888888888888887765 56777888888888876 4444443 56778888888888877 665554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=124.63 Aligned_cols=131 Identities=22% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-cc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-IG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~~ 124 (543)
++.++++|++..|.+..... ..+..+++|+.|. +++|.+.+ ..+..|..+++|++|+|++|.++.+|.. |.
T Consensus 30 l~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~---Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPP-GAFSPYKKLRRID---LSNNQISE----LAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp CCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEE---CCSSCCCE----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEE---CCCCcCCC----cCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 33445555555554433322 2333333333332 44444443 1122233444555555555554444332 34
Q ss_pred CcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCCC
Q 044382 125 DLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 185 (543)
.+++|++|+|++|.++.+ |..+..+++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 445555555555544444 333444445555555444 222222 224444444455544444
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=124.49 Aligned_cols=101 Identities=24% Similarity=0.381 Sum_probs=53.8
Q ss_pred cCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhHHHhhhccccee
Q 044382 102 KLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 179 (543)
.+++|++|+|++|.++.+|. .|..+++|++|+|++|.++.+|.. +..+++|++|++++| .+..+|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEE
Confidence 55555555555555555543 245555555555555555555332 345555555555554 344555555555555555
Q ss_pred ecCCCCCcccccc-cccccccccccc
Q 044382 180 NDSNTDSLEEMPL-GIGKLTCLQTLC 204 (543)
Q Consensus 180 ~l~~~~~~~~lp~-~l~~l~~L~~L~ 204 (543)
++++|. +..+|. .+..+++|+.|+
T Consensus 141 ~L~~N~-l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 141 ALDQNQ-LKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEE
Confidence 555555 444442 245555555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-14 Score=132.16 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=56.1
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 153 (543)
+++.+..+++.+|.+.+ ++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~-----~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-----LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-----EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccc-----cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCC
Confidence 34444444455555553 11 3345666666666666666655 45666666666666666666654 56666666
Q ss_pred eeecCCCchhhhhhHHHhhhcccceeecCCCC
Q 044382 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 154 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
+|++++| .+..+|. +.. ++|++|++++|.
T Consensus 89 ~L~L~~N-~l~~l~~-~~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 89 ELSVNRN-RLKNLNG-IPS-ACLSRLFLDNNE 117 (263)
T ss_dssp EEECCSS-CCSCCTT-CCC-SSCCEEECCSSC
T ss_pred EEECCCC-ccCCcCc-ccc-CcccEEEccCCc
Confidence 6666665 3444443 222 566666666655
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=124.05 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=85.0
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L 129 (543)
++++++.|.+..+.. .+ ...++.| ++++|.+.+..+..++. .+++|++|++++|.++.++. .|..+++|
T Consensus 14 ~~l~~s~n~l~~iP~--~~--~~~~~~L---~L~~N~l~~~~~~~~~~---~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE--HI--PQYTAEL---RLNNNEFTVLEATGIFK---KLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSSCCS--CC--CTTCSEE---ECCSSCCCEECCCCCGG---GCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEeEeCCCCcccCcc--CC--CCCCCEE---EcCCCcCCccCchhhhc---cCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 356666665543321 11 1223333 36666666533333333 66777777777777666643 56677777
Q ss_pred cEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccc-ccccccccccccccceE
Q 044382 130 RYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEM-PLGIGKLTCLQTLCNFV 207 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~~~~ 207 (543)
++|+|++|.++.+|. .+..+++|++|++++|......|..+..+++|++|++++|. +..+ |..+..+++|+.|++..
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecC
Confidence 777777777776643 36667777777777764333334556667777777777776 4443 55566666666665433
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=128.51 Aligned_cols=168 Identities=21% Similarity=0.259 Sum_probs=115.3
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
..++++|++..|.+... ..+..+++|+.|. +++|.+.+. ++ +.++++|++|++++|.++.++. +..+
T Consensus 45 l~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~---L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV---QGIQYLPNVTKLF---LNGNKLTDI-----KP-LANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCCC---TTGGGCTTCCEEE---CCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred cCcccEEEccCCCcccC---hhHhcCCCCCEEE---ccCCccCCC-----cc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence 35678888888776544 3355566666664 777777752 22 5578888888888888777654 7788
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccce
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 206 (543)
++|++|++++|.++.+ +.+..+++|++|++++| .+..+ ..++.+++|++|++++|. +..++. +..+++|+.|++.
T Consensus 112 ~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp TTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECC
Confidence 8888888888888876 35777888888888886 45445 347788888888888887 555554 6667777766432
Q ss_pred EecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecC
Q 044382 207 VVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCS 264 (543)
Q Consensus 207 ~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (543)
.+.. .. .. .+..+++|+.|++++|..
T Consensus 187 ~N~i------------------------------~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 187 KNHI------------------------------SD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SSCC------------------------------CB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred CCcC------------------------------CC-Ch-hhccCCCCCEEECcCCcc
Confidence 2210 00 01 167788999999988875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=123.18 Aligned_cols=139 Identities=15% Similarity=0.079 Sum_probs=112.9
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD- 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~- 121 (543)
+..++..+++|++..|.+........+..+++|+.|. +++|.+.+ ++. ..|..+++|++|+|++|.++.++.
T Consensus 27 P~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~---L~~N~i~~-i~~---~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 27 PEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN---FSNNKITD-IEE---GAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp CSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEE---CCSSCCCE-ECT---TTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred ccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEE---CCCCcCCE-ECH---HHhCCCCCCCEEECCCCccCccCHh
Confidence 3466778999999999987664435567777877775 89999885 222 245589999999999999998865
Q ss_pred cccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLE 188 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 188 (543)
.|..+++|++|+|++|.++.+ |..+..+++|++|++++|......|..+..+++|+.|++++|.+..
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 589999999999999999988 6778999999999999985444446778899999999999998443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=115.93 Aligned_cols=115 Identities=23% Similarity=0.225 Sum_probs=73.8
Q ss_pred cCCCccc-cccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccc-cchhhhcccccceeecCCC
Q 044382 83 LSNGFLS-GYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT-LPESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 83 l~~n~~~-~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~l~~~ 160 (543)
+++|.+. + .++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 24 l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 24 LDNSRSNEG----KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CTTCBCBTT----BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred ccCCcCChh----HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 6666555 3 2333344677777777777777666 556777777777777777776 5666666777777777776
Q ss_pred chhhhhh--HHHhhhcccceeecCCCCCcccccc----cccccccccccc
Q 044382 161 RRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPL----GIGKLTCLQTLC 204 (543)
Q Consensus 161 ~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~ 204 (543)
. +..++ ..++.+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 99 ~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 99 K-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp C-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred c-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 3 44433 556677777777777776 555544 456666666664
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=143.56 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=36.3
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
.+++|++|+|++|.+..+| .+..+++|++|+|++|.++.++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSL 160 (605)
T ss_dssp GCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEEC
Confidence 4444555555544444433 3444444555555444444432 2444444555554444 22223 22444444444544
Q ss_pred CCCC
Q 044382 182 SNTD 185 (543)
Q Consensus 182 ~~~~ 185 (543)
++|.
T Consensus 161 s~N~ 164 (605)
T 1m9s_A 161 EDNQ 164 (605)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 4444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=116.99 Aligned_cols=127 Identities=24% Similarity=0.231 Sum_probs=105.4
Q ss_pred CCceEEeecccCCCccc-cccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccc-cchhhhccc
Q 044382 73 QHLRTFLPVRLSNGFLS-GYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT-LPESVNKLY 150 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~-~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~l~ 150 (543)
++++.|. +++|.+. + .++..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..++
T Consensus 24 ~~L~~L~---l~~n~l~~~----~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELV---LDNCKSNDG----KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEE---CCSCBCBTT----BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEE---CCCCCCChh----hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 5566665 8999887 4 3444456899999999999999888 778999999999999999997 687788899
Q ss_pred ccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCcccccc----ccccccccccccceEec
Q 044382 151 NLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 209 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~~~~~~ 209 (543)
+|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|++..+.
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999999998 566655 568899999999999999 777776 68889999999765543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=120.05 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=99.5
Q ss_pred hcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccc-cchhhhc
Q 044382 70 YDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT-LPESVNK 148 (543)
Q Consensus 70 ~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~ 148 (543)
.++++++.|. +++|.+.. ++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..+..
T Consensus 41 ~~l~~L~~L~---l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYIT---LANINVTD-----LT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEE---EESSCCSC-----CT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEe---ccCCCccC-----hH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcC
Confidence 3456666665 78887773 22 4668899999999999876664 68889999999999999985 5788899
Q ss_pred ccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 149 LYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 149 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
+++|++|++++|......|..++.+++|++|++++|..++.+| .+..+++|+.|++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 9999999999986555577778999999999999997677776 5777778877754
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-13 Score=118.94 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=84.4
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS- 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~- 122 (543)
..++.++++|++..|.+..... ..+..+++|++|. +++|.+.+ ++...+ ..+++|++|++++|.++.+|..
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~---l~~n~l~~-~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNSLKSLPN-GVFDELTSLTQLY---LGGNKLQS-LPNGVF---NKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp SCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEE---CCSSCCCC-CCTTTT---TTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCcEEEcCCCccCcCCh-hhhcccccCcEEE---CCCCccCc-cChhhc---CCCCCcCEEECCCCcCCccCHhH
Confidence 3455677777777777654432 3445555665554 67776663 222333 3677777777777777766543
Q ss_pred ccCcccccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCC
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 185 (543)
+..+++|++|++++|.++.+|.. +..+++|++|++++| .+..++. .+..+++|++|++++|.
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 56777777777777777766543 567777777777776 3444443 35667777777777776
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=121.59 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=110.9
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
..++++|++.+|.+... ..+..+++|+.|. +++|.+.+. ++ +..+++|++|++++|.++.+|... .
T Consensus 40 l~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~---L~~N~i~~~-----~~-l~~l~~L~~L~L~~N~l~~l~~~~-~- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSL---AGMQFFTNLKELH---LSHNQISDL-----SP-LKDLTKLEELSVNRNRLKNLNGIP-S- 105 (263)
T ss_dssp HTTCSEEECTTSCCCCC---TTGGGCTTCCEEE---CCSSCCCCC-----GG-GTTCSSCCEEECCSSCCSCCTTCC-C-
T ss_pred cCcCcEEECcCCCcccc---hHHhhCCCCCEEE---CCCCccCCC-----hh-hccCCCCCEEECCCCccCCcCccc-c-
Confidence 36788999999877544 3455667777775 888888852 22 668899999999999988876533 3
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccce
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 206 (543)
++|++|++++|.++.++ .+..+++|++|++++| .+..++ .++.+++|++|++++|. +..+ ..+..+++|+.|++.
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEE
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCC
Confidence 89999999999988875 5888999999999987 466666 48889999999999998 5555 567788888888765
Q ss_pred Eec
Q 044382 207 VVG 209 (543)
Q Consensus 207 ~~~ 209 (543)
.+.
T Consensus 181 ~N~ 183 (263)
T 1xeu_A 181 GQK 183 (263)
T ss_dssp EEE
T ss_pred CCc
Confidence 543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=132.70 Aligned_cols=152 Identities=23% Similarity=0.324 Sum_probs=112.0
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhh-cCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLY-DIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~ 121 (543)
+..++..+++|+++.|.+..... ..+. .+++|+.|. +++|.+.+ ++. ..|..+++|++|+|++|.++.++.
T Consensus 34 P~~~~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~---L~~N~i~~-i~~---~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 34 PQSLPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLL---LSHNHLNF-ISS---EAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp CSSCCTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEE---CCSSCCCE-ECT---TTTTTCTTCCEEECCSSCCCEECT
T ss_pred CccCCCCCCEEECCCCCCCccCh-hhhhhcccccCEEE---CCCCcCCc-cCh---hhccCCCCCCEEECCCCcCCcCCH
Confidence 34567788999999998866554 4454 666677665 88888885 222 245588899999999999887755
Q ss_pred -cccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHH----hhhcccceeecCCCCCcccccc-cc
Q 044382 122 -SIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADM----GNLIKLHHLNDSNTDSLEEMPL-GI 194 (543)
Q Consensus 122 -~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~----~~l~~L~~L~l~~~~~~~~lp~-~l 194 (543)
.|..+++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..+ ..+++|+.|++++|. +..+|. .+
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 183 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDL 183 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHH
T ss_pred HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHh
Confidence 578899999999999999877 667888999999999987 566676554 568899999999988 666663 45
Q ss_pred cccccc--cccc
Q 044382 195 GKLTCL--QTLC 204 (543)
Q Consensus 195 ~~l~~L--~~L~ 204 (543)
..++.+ +.|+
T Consensus 184 ~~l~~~~l~~l~ 195 (361)
T 2xot_A 184 QKLPAWVKNGLY 195 (361)
T ss_dssp HHSCHHHHTTEE
T ss_pred hhccHhhcceEE
Confidence 555553 4453
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-13 Score=119.82 Aligned_cols=146 Identities=22% Similarity=0.253 Sum_probs=112.4
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L 129 (543)
+.+++.++.+..+.. .+ .+.++.|. +++|.+.+ ++.. .|..+++|++|+|++|.++.+ |..|..+++|
T Consensus 14 ~~v~c~~~~l~~iP~--~l--~~~l~~L~---l~~n~i~~-i~~~---~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT--NL--PETITEIR---LEQNTIKV-IPPG---AFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTSCCSSCCS--SC--CTTCCEEE---CCSSCCCE-ECTT---SSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred CEEEcCCCCcCcCCC--cc--CcCCCEEE---CCCCcCCC-cCHh---HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 456776666544321 12 14566664 99998885 3323 445899999999999999977 7789999999
Q ss_pred cEEecCCCCccccchh-hhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc-ccccccccccccceE
Q 044382 130 RYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFV 207 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~ 207 (543)
++|+|++|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|. +..++. .+..+++|+.|++..
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence 9999999999999765 5789999999999985434345668899999999999999 666665 488888998886544
Q ss_pred e
Q 044382 208 V 208 (543)
Q Consensus 208 ~ 208 (543)
+
T Consensus 162 N 162 (220)
T 2v9t_B 162 N 162 (220)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-13 Score=115.32 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=39.4
Q ss_pred ccCCeeeEEEecCCCccccCcc-ccCcccccEEecCCCCccccch--hhhcccccceeecCCCchhhhhhHH----Hhhh
Q 044382 101 FKLQRLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVIRTLPE--SVNKLYNLHTLLLEGCRRLKKLCAD----MGNL 173 (543)
Q Consensus 101 ~~l~~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~l~~~----~~~l 173 (543)
..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. ++.+
T Consensus 61 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKV 139 (176)
T ss_dssp CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHC
T ss_pred ccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHC
Confidence 3445555555555555444432 2445555555555555544443 4444555555555544 23333332 4444
Q ss_pred cccceeecCCCC
Q 044382 174 IKLHHLNDSNTD 185 (543)
Q Consensus 174 ~~L~~L~l~~~~ 185 (543)
++|+.|++++|.
T Consensus 140 ~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 140 PQVRVLDFQKVK 151 (176)
T ss_dssp TTCSEETTEECC
T ss_pred CccceeCCCcCC
Confidence 555555554444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-13 Score=111.87 Aligned_cols=129 Identities=26% Similarity=0.259 Sum_probs=104.1
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-cCccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-LPDSI 123 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~~ 123 (543)
..+.++++|++.+|.+........+..+++|+.|. +++|.+.+. ..+..+++|++|++++|.++. +|..+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~---l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLS---TINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEE---CTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEE---CcCCCCCCc------hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 34578999999999886111113455667777775 999988862 556699999999999999997 77777
Q ss_pred cCcccccEEecCCCCccccc--hhhhcccccceeecCCCchhhhhhH----HHhhhcccceeecCC
Q 044382 124 GDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHTLLLEGCRRLKKLCA----DMGNLIKLHHLNDSN 183 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~ 183 (543)
..+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .++.+++|++|++++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 88999999999999999875 78999999999999998 5555553 588999999999863
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=118.56 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=111.9
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS 122 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~ 122 (543)
+..++.++++|++++|.+..... ..+..+++|+.|. +++|.+.. ++...+. .+++|++|+|++|.++.+|..
T Consensus 35 p~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~---L~~N~l~~-i~~~~~~---~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 35 PAGIPTNAQILYLHDNQITKLEP-GVFDSLINLKELY---LGSNQLGA-LPVGVFD---SLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEE---CCSSCCCC-CCTTTTT---TCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCEEEcCCCccCccCH-HHhhCccCCcEEE---CCCCCCCC-cChhhcc---cCCCcCEEECCCCcCCccChh
Confidence 34577899999999999877654 5566777777775 99998864 4434444 899999999999999988654
Q ss_pred -ccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCc
Q 044382 123 -IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSL 187 (543)
Q Consensus 123 -~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~ 187 (543)
|..+++|++|++++|.++.+|..+..+++|++|++++| .+..++ ..+..+++|+.|++.+|.+.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 78999999999999999999999999999999999998 565665 44788999999999999833
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=127.40 Aligned_cols=174 Identities=13% Similarity=0.139 Sum_probs=99.8
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCc
Q 044382 288 NLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCL 367 (543)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 367 (543)
+++.|+++++....+|..+ +++|++|++++|... .+| ..+++|++|++++| .++.++. + ..+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N-~l~~ip~-l--------~~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQNALI-SLP--ELPASLEYLDACDN-RLSTLPE-L--------PASL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSS-CCSCCCC-C--------CTTC
T ss_pred CccEEEeCCCCCCccCHhH----cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCC-CCCCcch-h--------hcCC
Confidence 5666666666655555433 246777777776543 455 45677777777776 3333332 1 1167
Q ss_pred CeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCC
Q 044382 368 ETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGC 447 (543)
Q Consensus 368 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 447 (543)
++|+++++ .++.+. ..+++|++|++++ |.++ .+|..+++|+.|++.+|....... -.++|+.|++++|
T Consensus 123 ~~L~Ls~N-~l~~lp--------~~l~~L~~L~Ls~-N~l~-~lp~~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N 190 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLP--------ELPALLEYINADN-NQLT-MLPELPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTN 190 (571)
T ss_dssp CEEECCSS-CCSCCC--------CCCTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred CEEECCCC-cCCCCC--------CcCccccEEeCCC-CccC-cCCCcCCCcCEEECCCCCCCCcch-hhCCCCEEECcCC
Confidence 77777764 233211 1467888888888 4777 577655666666666654222111 1156666666666
Q ss_pred CCeeeecccCCCCCC-------ceEEEcCCCCCcccCCCcCCCCCCccEEecccC
Q 044382 448 KKVVWRSATDHLGSQ-------NSVVCRDTSNQVFLSGPLKPRIPKLEELKINNI 495 (543)
Q Consensus 448 ~~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c 495 (543)
....++. +.. +| ++|++++| .++.+|... ..+++|+.|++++|
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l-~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENI-LSLDPTCTIILEDN 240 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGG-GGSCTTEEEECCSS
T ss_pred CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHH-hcCCCCCEEEeeCC
Confidence 6555555 322 55 66666663 566666553 33666666666663
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=133.61 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCc-------cEEEeecCCCCCCCC-CCCCCCccceeeecCcc
Q 044382 287 KNLEQFGICGYGGTKFPTWLGDSSFLNL-------VTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 346 (543)
++|+.|++++|.+..+|. +.. +| +.|++++|... .+| .+..+++|++|++++|+
T Consensus 180 ~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 455566666655555554 221 34 66666666443 344 45556666666666664
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=112.17 Aligned_cols=127 Identities=20% Similarity=0.146 Sum_probs=104.1
Q ss_pred hcCCCceEEeecccCCCccccccccccccccccCC-eeeEEEecCCCccccCccccCcccccEEecCCCCccccchhh-h
Q 044382 70 YDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQ-RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-N 147 (543)
Q Consensus 70 ~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~ 147 (543)
.+.++++.| ++++|.+.. + +.+..+. +|++|++++|.++.+ ..+..+++|++|++++|.++.+|..+ .
T Consensus 16 ~~~~~L~~L---~l~~n~l~~-i-----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 16 TNAVRDREL---DLRGYKIPV-I-----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp ECTTSCEEE---ECTTSCCCS-C-----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CCcCCceEE---EeeCCCCch-h-----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 345555555 488888874 2 2233454 999999999999988 67899999999999999999997665 8
Q ss_pred cccccceeecCCCchhhhhhH--HHhhhcccceeecCCCCCccccccc----cccccccccccceEe
Q 044382 148 KLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHLNDSNTDSLEEMPLG----IGKLTCLQTLCNFVV 208 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~lp~~----l~~l~~L~~L~~~~~ 208 (543)
.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. +..+++|+.|+...+
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999999999998 5677776 68899999999999999 7778875 888999999976554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=114.46 Aligned_cols=98 Identities=26% Similarity=0.392 Sum_probs=46.4
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~ 182 (543)
.|++|++++|.++.+|..|..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++ ..+..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECC
Confidence 445555555555555544555555555555555555442 234455555555555542 22222 234455555555555
Q ss_pred CCCCccccccc-ccccccccccc
Q 044382 183 NTDSLEEMPLG-IGKLTCLQTLC 204 (543)
Q Consensus 183 ~~~~~~~lp~~-l~~l~~L~~L~ 204 (543)
+|. +..+|.+ +..+++|+.|+
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCC-CCeeChhhhhcCccccEEE
Confidence 555 3444432 44444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-12 Score=112.43 Aligned_cols=143 Identities=24% Similarity=0.332 Sum_probs=105.1
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-ccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-IGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~~~l~~L 129 (543)
+.+++..+.+..... .+ .++++.|. +++|.+.+ ++..+ |..+++|++|++++|.++.+|.. |..+++|
T Consensus 10 ~~v~c~~~~l~~~p~--~~--~~~l~~L~---l~~n~l~~-~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT--GI--PAQTTYLD---LETNSLKS-LPNGV---FDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCS--CC--CTTCSEEE---CCSSCCCC-CCTTT---TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEecCCCccCCCC--CC--CCCCcEEE---cCCCccCc-CChhh---hcccccCcEEECCCCccCccChhhcCCCCCc
Confidence 455666655433321 11 34566664 88888874 33333 34889999999999999888654 6899999
Q ss_pred cEEecCCCCccccchh-hhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCccccccc-cccccccccccce
Q 044382 130 RYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQTLCNF 206 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~~~ 206 (543)
++|++++|.++.+|.. +..+++|++|++++| .+..++. .+..+++|++|++++|. +..+|.. +..+++|+.|++.
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEec
Confidence 9999999999988654 688999999999997 4555554 46789999999999998 6666654 7778888877543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=119.52 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=66.1
Q ss_pred CCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeee-ecccCCCCCCceEEEcC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRD 469 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 469 (543)
..+++|++|+|++ |+++ .++. ..+..+++|+.|+|++|....+ +..+..+++|++|++++
T Consensus 85 ~~l~~L~~L~Ls~-N~l~-~~~~-----------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 85 VPVPNLRYLDLSS-NHLH-TLDE-----------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp TTCTTCCEEECCS-SCCC-EECT-----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCC-CcCC-cCCH-----------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 4566666666666 3555 2221 1233455666666666665544 34566677777777777
Q ss_pred CCCCcccCCCcC---CCCCCccEEecccCCCCccccccCccccccCCc--cceEeeccCC
Q 044382 470 TSNQVFLSGPLK---PRIPKLEELKINNIQNETCIWKSHNELLQDICS--LKRLLITSCP 524 (543)
Q Consensus 470 c~~l~~l~~~~~---~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~--L~~L~l~~c~ 524 (543)
| .++.+|...+ ..+++|+.|++++ ++++.++ +..+..++. |+.|+++++|
T Consensus 146 N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~---~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 146 N-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLP---LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp S-CCCSCCGGGTC----CTTCCEEECCS-SCCCCCC---HHHHHHSCHHHHTTEECCSSC
T ss_pred C-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCccC---HHHhhhccHhhcceEEecCCC
Confidence 3 6667776655 4577777777777 5677775 235565665 3677777753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-12 Score=112.88 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=82.2
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L 129 (543)
+.++++.+.+..+.. .+ ...++.| ++++|.+.+..+..+ |..+++|++|+|++|.++.+ |..|..+++|
T Consensus 11 ~~l~~s~~~l~~ip~--~~--~~~l~~L---~l~~n~i~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR--DI--PLHTTEL---LLNDNELGRISSDGL---FGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCCS--CC--CTTCSEE---ECCSCCCCSBCCSCS---GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcCcCcc--CC--CCCCCEE---ECCCCcCCccCCccc---cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 567777776643322 12 1245555 377777765322223 33777788888888777766 5567777788
Q ss_pred cEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCc
Q 044382 130 RYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSL 187 (543)
Q Consensus 130 ~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 187 (543)
++|+|++|.++.++ ..+..+++|++|++++|...+..|..+..+++|++|++++|.+.
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88888888777664 34677777888888777444444556777777777777777743
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-12 Score=110.81 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=78.0
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCcc--ccCcccccEEecCCCCcccc-chhhhcccccceeecC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS--IGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLE 158 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~--~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~ 158 (543)
++++|.+.. +|..++. .+++|++++|.++.++.. |..+++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 14 ~~s~~~l~~-ip~~~~~------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 14 DCTGRGLKE-IPRDIPL------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp ECTTSCCSS-CCSCCCT------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EcCCCCcCc-CccCCCC------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 466666652 4433333 677777777777766542 67777777777777777766 5667777777777777
Q ss_pred CCchhhhhh-HHHhhhcccceeecCCCCCccccccccccccccccccceEe
Q 044382 159 GCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 159 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
+|. +..++ ..+..+++|++|++++|.+.+..|..+..+++|+.|++..+
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 764 43333 34667777777777777744444566777777777754433
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=137.62 Aligned_cols=108 Identities=25% Similarity=0.338 Sum_probs=82.5
Q ss_pred ccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccce
Q 044382 99 KLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178 (543)
Q Consensus 99 ~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 178 (543)
.+..++.|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..++.+++|++|++++|. +..+|..++.+++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY 297 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence 444778888888888888777777777888888888888888888888888888888888874 5577777888888888
Q ss_pred eecCCCCCccccccccccccccccccceEe
Q 044382 179 LNDSNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 179 L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
|++++|. ++.+|.+|+.+++|+.|++..+
T Consensus 298 L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp EECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred EECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 8888887 6677877888888888765433
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-12 Score=137.98 Aligned_cols=119 Identities=26% Similarity=0.334 Sum_probs=94.2
Q ss_pred hhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhc
Q 044382 69 LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNK 148 (543)
Q Consensus 69 ~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~ 148 (543)
+..++.|+.| ++++|.+.. ++..+..+++|++|+|++|.++.+|..|+.+++|++|+|++|.++.+|..++.
T Consensus 220 ~~~l~~L~~L---~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 220 KYDDQLWHAL---DLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp --CCCCCCEE---ECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hccCCCCcEE---ECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 3344444444 588888873 34444578899999999999998898899999999999999999999999999
Q ss_pred ccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccc
Q 044382 149 LYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGK 196 (543)
Q Consensus 149 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~ 196 (543)
|++|++|++++| .+..+|..++.+++|++|++++|.+.+.+|..+..
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999999999997 56788888899999999999999955555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-12 Score=129.38 Aligned_cols=99 Identities=23% Similarity=0.214 Sum_probs=63.0
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 184 (543)
.|++|++++|.++.+|. ++.+++|++|+|++|.++.+|..++.+++|++|++++| .+..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 46666666666666665 66666666666666666666666666666666666665 344455 4666666666666666
Q ss_pred CCcccc--ccccccccccccccceE
Q 044382 185 DSLEEM--PLGIGKLTCLQTLCNFV 207 (543)
Q Consensus 185 ~~~~~l--p~~l~~l~~L~~L~~~~ 207 (543)
. +..+ |..++.+++|+.|++..
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTT
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecC
Confidence 6 4444 56666666666665433
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.6e-13 Score=118.07 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=84.5
Q ss_pred hhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhh
Q 044382 68 DLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVN 147 (543)
Q Consensus 68 ~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~ 147 (543)
.+..+++|+.|. +++|.+.+ + + .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+.
T Consensus 43 ~~~~l~~L~~L~---ls~n~l~~-l----~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLA---LSTNNIEK-I----S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp HHHHTTTCSEEE---CSEEEESC-C----C-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HHhcCCCCCEEE---CCCCCCcc-c----c-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 555666666665 77777664 2 2 455777888888888877777776667778888888888777776 577
Q ss_pred cccccceeecCCCchhhhhhH--HHhhhcccceeecCCCCCccccccc----------ccccccccccc
Q 044382 148 KLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHLNDSNTDSLEEMPLG----------IGKLTCLQTLC 204 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~lp~~----------l~~l~~L~~L~ 204 (543)
.+++|++|++++| .+..++. .+..+++|++|++++|.+....|.. +..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7788888888776 4444432 4677778888888877733333321 45555665553
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-13 Score=121.10 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=102.7
Q ss_pred eEEeecccCCCccccccc--cccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccc
Q 044382 76 RTFLPVRLSNGFLSGYLA--CSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153 (543)
Q Consensus 76 ~~L~~~~l~~n~~~~~~~--~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 153 (543)
..+..++++.+.+.+.++ ..++..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE 96 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence 344444577777776433 123336779999999999999999988 88999999999999999999999888999999
Q ss_pred eeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc--ccccccccccccc
Q 044382 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL--GIGKLTCLQTLCN 205 (543)
Q Consensus 154 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~~ 205 (543)
+|++++| .+..+| .++.+++|++|++++|. +..++. .+..+++|+.|++
T Consensus 97 ~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 97 ELWISYN-QIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp EEEEEEE-ECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred EEECcCC-cCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEe
Confidence 9999998 566677 58999999999999999 666553 5777888888754
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-11 Score=104.25 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=89.2
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L 129 (543)
+.+++..+.+..+.. .+ .++++.|. +++|.+.. ++..|.++++|++|+|++|.++.++ ..|..+++|
T Consensus 13 ~~l~~~~~~l~~ip~--~~--~~~l~~L~---L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK--GI--PRDVTELY---LDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCS--CC--CTTCCEEE---CCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCC--CC--CCCCCEEE---CCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 466777776644321 12 24555554 88887773 3345568888899999888888775 458888899
Q ss_pred cEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCC
Q 044382 130 RYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 130 ~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 185 (543)
++|+|++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++.+|.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 99999988888875 46788888999999887 4556654 46788889999988887
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-10 Score=108.96 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=41.1
Q ss_pred cCCCCccceEEEcCCCCeeeecccCCCCCCc-eEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCcccccc
Q 044382 433 IASLPALCKMEIGGCKKVVWRSATDHLGSQN-SVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 511 (543)
Q Consensus 433 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 511 (543)
+..+++|+.+++.++-...-..+|.++++|+ ++.+.+ .++.++..+|.++++|++|++++ ++++.|+ +..+.+
T Consensus 246 F~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~---~~aF~~ 319 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLG---DELFGN 319 (329)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEEC---TTTTCT
T ss_pred hhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccc---hhhhcC
Confidence 3335555555555541111223455555555 555555 45555555555555555555555 4555554 225555
Q ss_pred CCccceEe
Q 044382 512 ICSLKRLL 519 (543)
Q Consensus 512 l~~L~~L~ 519 (543)
+++|+.++
T Consensus 320 ~~~L~~ly 327 (329)
T 3sb4_A 320 GVPSKLIY 327 (329)
T ss_dssp TCCCCEEE
T ss_pred Ccchhhhc
Confidence 55555554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=104.55 Aligned_cols=105 Identities=24% Similarity=0.262 Sum_probs=74.9
Q ss_pred cccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCccccchh-hhcccccceeecC
Q 044382 81 VRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLE 158 (543)
Q Consensus 81 ~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~ 158 (543)
+++++|.+.. +|..++ ++|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 17 l~~~~n~l~~-iP~~~~------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 17 VNCQNIRLAS-VPAGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp EECCSSCCSS-CCSCCC------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEeCCCCCCc-cCCCcC------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3577777653 333333 4788888888888876 55678888888888888888888665 4678888888888
Q ss_pred CCchhhhhhHH-HhhhcccceeecCCCCCcccccccc
Q 044382 159 GCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEMPLGI 194 (543)
Q Consensus 159 ~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~l 194 (543)
+| .+..+|.. +..+++|++|++++|. +.-.+..+
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDI 124 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGG
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCC-cccccccH
Confidence 86 45566654 7778888888888887 54444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=120.70 Aligned_cols=118 Identities=23% Similarity=0.249 Sum_probs=99.7
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 153 (543)
.|+.| ++++|.+.+ + + .++.+++|++|+|++|.++.+|..|+.+++|++|+|++|.++.+| .++.+++|+
T Consensus 442 ~L~~L---~Ls~n~l~~-l----p-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVL---HLAHKDLTV-L----C-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQ 511 (567)
T ss_dssp TCSEE---ECTTSCCSS-C----C-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred CceEE---EecCCCCCC-C----c-CccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCc
Confidence 45555 599999886 3 2 266999999999999999999999999999999999999999998 899999999
Q ss_pred eeecCCCchhhhh--hHHHhhhcccceeecCCCCCccccccccc----cccccccc
Q 044382 154 TLLLEGCRRLKKL--CADMGNLIKLHHLNDSNTDSLEEMPLGIG----KLTCLQTL 203 (543)
Q Consensus 154 ~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~lp~~l~----~l~~L~~L 203 (543)
+|++++|. +..+ |..++.+++|+.|++++|. +..+|+.+. .+++|+.|
T Consensus 512 ~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 512 ELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 99999984 5555 8889999999999999999 666665543 36677766
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=99.67 Aligned_cols=124 Identities=22% Similarity=0.251 Sum_probs=75.3
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-ccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-IGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~~~l~~ 128 (543)
.+.+++..+.+..... . -.+.++.|. +++|.+.+ ++... |..+++|++|++++|.++.+|.. +..+++
T Consensus 9 ~~~l~~~~~~l~~~p~--~--~~~~l~~L~---l~~n~l~~-~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT--G--IPSSATRLE---LESNKLQS-LPHGV---FDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCT--T--CCTTCSEEE---CCSSCCCC-CCTTT---TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCC--C--CCCCCcEEE---eCCCcccE-eCHHH---hcCcccccEEECCCCcceEeChhHccCCCc
Confidence 3456666655533321 1 123455553 66666664 22222 33677777777777777766543 567777
Q ss_pred ccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhHH-HhhhcccceeecCCCC
Q 044382 129 LRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTD 185 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~ 185 (543)
|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 77777777777766543 566777777777776 44455543 4567777777777776
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.1e-10 Score=106.86 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=33.0
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccc-eeeecC
Q 044382 286 HKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLK-HLTVRG 344 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~-~L~l~~ 344 (543)
+++|+.+++.++....++..... .+++|+.+++.++ +..++ .+..|++|+ .+.+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 56677777776665555554332 3666777777664 33333 456666666 666654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=99.86 Aligned_cols=96 Identities=27% Similarity=0.327 Sum_probs=64.5
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCccccchh-hhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~ 159 (543)
++++|.+.. +|..++ +.|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. +..+++|++|++++
T Consensus 15 ~~s~n~l~~-ip~~~~------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 15 DCSGKSLAS-VPTGIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ECTTSCCSS-CCSCCC------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCCcCc-cCccCC------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 466666663 333333 4677777777777766 44577777777777777777777554 46777777777777
Q ss_pred CchhhhhhH-HHhhhcccceeecCCCC
Q 044382 160 CRRLKKLCA-DMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 160 ~~~~~~l~~-~~~~l~~L~~L~l~~~~ 185 (543)
| .+..+|. .+..+++|++|++++|.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 6 4555554 36677777777777776
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-10 Score=97.29 Aligned_cols=115 Identities=17% Similarity=0.285 Sum_probs=92.5
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS- 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~- 122 (543)
..++.++++|++.+|.+..... ..+..+++|++|. +++|.+.+ ++... |..+++|++|++++|.++.+|..
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~---l~~n~l~~-~~~~~---~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 24 TGIPSSATRLELESNKLQSLPH-GVFDKLTQLTKLS---LSQNQIQS-LPDGV---FDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp TTCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEE---CCSSCCCC-CCTTT---TTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCcEEEeCCCcccEeCH-HHhcCcccccEEE---CCCCcceE-eChhH---ccCCCccCEEECCCCCccccCHHH
Confidence 4567899999999999876543 4566677777775 99998885 33333 44899999999999999988664
Q ss_pred ccCcccccEEecCCCCccccchh-hhcccccceeecCCCchhhhh
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKL 166 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l 166 (543)
+..+++|++|++++|.++.+|.. +..+++|++|++++|......
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 78999999999999999999766 578999999999998654433
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-08 Score=98.89 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=54.2
Q ss_pred ccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCcccccc
Q 044382 432 SIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 511 (543)
Q Consensus 432 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 511 (543)
.+..+.+|+.+.+..+-...-..++.++++|+++.|.+ .++.++..+|.++.+|+.+.+.. .++.|. ...+.+
T Consensus 292 ~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~---~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG---ANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC---TTTBTT
T ss_pred cccccccccccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh---HHHhhC
Confidence 34446667777665442222334666777777777764 46777777777777777777765 377775 336777
Q ss_pred CCccceEeecc
Q 044382 512 ICSLKRLLITS 522 (543)
Q Consensus 512 l~~L~~L~l~~ 522 (543)
+++|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 77777777643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=6e-10 Score=96.33 Aligned_cols=100 Identities=20% Similarity=0.337 Sum_probs=86.0
Q ss_pred eeEEEecCCCccccCccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHH-HhhhcccceeecCC
Q 044382 106 LRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSN 183 (543)
Q Consensus 106 L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~ 183 (543)
-+.++++++.++.+|..+. ++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3789999999999998774 8999999999999988 667899999999999998 56677765 57999999999999
Q ss_pred CCCccccccc-cccccccccccceEec
Q 044382 184 TDSLEEMPLG-IGKLTCLQTLCNFVVG 209 (543)
Q Consensus 184 ~~~~~~lp~~-l~~l~~L~~L~~~~~~ 209 (543)
|. +..+|.+ +..+++|+.|++..+.
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCC
Confidence 99 7777765 8889999999765443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-08 Score=97.28 Aligned_cols=165 Identities=10% Similarity=0.067 Sum_probs=89.8
Q ss_pred CCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCC
Q 044382 311 FLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGV 390 (543)
Q Consensus 311 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 390 (543)
..+|+.+.+......-.-..+..+..|+.+.+... ...+.... ......++.+...... + .... .
T Consensus 229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~-----F~~~~~l~~~~~~~~~-i----~~~~---F 293 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN--KLRIGGSL-----FYNCSGLKKVIYGSVI-V----PEKT---F 293 (394)
T ss_dssp TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT--TCEECSCT-----TTTCTTCCEEEECSSE-E----CTTT---T
T ss_pred cCCCceEEECCCceecccccccccccceeEEcCCC--cceeeccc-----cccccccceeccCcee-e----cccc---c
Confidence 34666666654321111114556777777777543 12222111 1224445444443211 1 1111 3
Q ss_pred CCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDT 470 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c 470 (543)
..+.+|+.+.+.. .++ .++. ..+..+.+|+.++|...-...-..+|.++++|+++.+..
T Consensus 294 ~~~~~L~~i~l~~--~i~-~I~~-----------------~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~- 352 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVK-FIGE-----------------EAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPL- 352 (394)
T ss_dssp TTCTTCCEEEECT--TCC-EECT-----------------TTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCT-
T ss_pred ccccccccccccc--ccc-eech-----------------hhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECc-
Confidence 4566677776654 243 2221 134445566666664331111235788899999999976
Q ss_pred CCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceE
Q 044382 471 SNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 518 (543)
Q Consensus 471 ~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L 518 (543)
.++.++..+|.++.+|+.+++.. .++.+ ...+.++++|+.+
T Consensus 353 -~l~~I~~~aF~~C~~L~~i~lp~--~~~~~----~~~F~~c~~L~~I 393 (394)
T 4fs7_A 353 -SLRKIGANAFQGCINLKKVELPK--RLEQY----RYDFEDTTKFKWI 393 (394)
T ss_dssp -TCCEECTTTBTTCTTCCEEEEEG--GGGGG----GGGBCTTCEEEEE
T ss_pred -cccEehHHHhhCCCCCCEEEECC--CCEEh----hheecCCCCCcEE
Confidence 48889888899999999999975 45555 2245556666554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.97 E-value=5.8e-10 Score=96.07 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=85.8
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHH-HhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~ 182 (543)
..+++++++|.++.+|..+ .++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 4578999999999999876 48999999999999988 667899999999999998 56666654 6899999999999
Q ss_pred CCCCccccccc-cccccccccccceEec
Q 044382 183 NTDSLEEMPLG-IGKLTCLQTLCNFVVG 209 (543)
Q Consensus 183 ~~~~~~~lp~~-l~~l~~L~~L~~~~~~ 209 (543)
+|. +..+|.. +..+++|+.|++..+.
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999 7777764 8899999998765443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.75 E-value=8.9e-09 Score=100.01 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=63.5
Q ss_pred ccCCC-ccccccccccccccccCCeeeEEEecC-CCccccC-ccccCcccccEEecCCCCccccc-hhhhcccccceeec
Q 044382 82 RLSNG-FLSGYLACSILPKLFKLQRLRVFSLRG-YHIYELP-DSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLL 157 (543)
Q Consensus 82 ~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l 157 (543)
+++++ .+.+ +|. +..+.+|++|+|++ |.++.+| ..|..+++|++|+|++|.++.+| ..+..+++|++|+|
T Consensus 14 ~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 14 RCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp ECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35555 5553 233 44677777777775 7777765 45777777777777777777664 45677777777777
Q ss_pred CCCchhhhhhHHHhhhcccceeecCCCC
Q 044382 158 EGCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 158 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
++| .+..+|..+.....|+.|++.+|.
T Consensus 88 ~~N-~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFN-ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCC-ccceeCHHHcccCCceEEEeeCCC
Confidence 776 455565443333337777777777
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-07 Score=89.94 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=26.4
Q ss_pred ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeecc
Q 044382 455 ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITS 522 (543)
Q Consensus 455 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~ 522 (543)
+|.++++|+.+.+.+ .++.++..+|.++.+|+.+.+.. +++.|. +..+.++ +|+.+++.+
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~---~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQIN---FSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEEC---TTSSSSS-CCCEEEECC
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEc---HHhCCCC-CCCEEEEcC
Confidence 444444444444442 24444444444444444444432 244443 2244444 444444443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-07 Score=91.61 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=48.9
Q ss_pred eeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
+|+.+.+..+ ++.++. +|.++ +|+.+.+.. .++.++ ..+..|++|+.+++..| .+..++.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 4666666544 444432 35443 466666654 455552 34556666666666654 444555443335566666665
Q ss_pred CCCCcccccc-cccccccccccc
Q 044382 183 NTDSLEEMPL-GIGKLTCLQTLC 204 (543)
Q Consensus 183 ~~~~~~~lp~-~l~~l~~L~~L~ 204 (543)
.+ +..++. .|..+++|+.+.
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEE
T ss_pred Cc--hheehhhHhhCCCCCCEEe
Confidence 32 344432 355555555553
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-09 Score=102.70 Aligned_cols=159 Identities=18% Similarity=0.114 Sum_probs=100.8
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcC--CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC--
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDI--QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-- 120 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-- 120 (543)
.+...++.|+++.|.+..... ..+..+ .....|..+++++|.+...-...+.+ .+++|++|+|++|.++...
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---VFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHH-HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---HHHTEEEEECCSSCCCHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHH-HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---HHHhccHhhcCCCCCCHHHHH
Confidence 445678899999888754322 333222 11234444458888876532233333 5668899999999887431
Q ss_pred ---ccc-cCcccccEEecCCCCccc-----cchhhhcccccceeecCCCchhh----hhhHHHhhhcccceeecCCCCCc
Q 044382 121 ---DSI-GDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRRLK----KLCADMGNLIKLHHLNDSNTDSL 187 (543)
Q Consensus 121 ---~~~-~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~ 187 (543)
..+ ...++|++|+|++|.++. ++..+..+++|++|++++|.... .++..+...++|++|++++|. +
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i 223 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-A 223 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-C
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-C
Confidence 222 346789999999998764 45556778889999999875322 234446677889999999988 4
Q ss_pred cc-----cccccccccccccccceEe
Q 044382 188 EE-----MPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 188 ~~-----lp~~l~~l~~L~~L~~~~~ 208 (543)
+. ++..+...++|+.|++..+
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 43 2333445567777755433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-08 Score=98.25 Aligned_cols=99 Identities=17% Similarity=0.072 Sum_probs=81.0
Q ss_pred EEEecCC-CccccCccccCcccccEEecCC-CCccccc-hhhhcccccceeecCCCchhhhh-hHHHhhhcccceeecCC
Q 044382 108 VFSLRGY-HIYELPDSIGDLRYLRYLNLSG-TVIRTLP-ESVNKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHHLNDSN 183 (543)
Q Consensus 108 ~L~Ls~~-~l~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~ 183 (543)
.++.+++ .++.+|. +..+++|++|+|++ |.++.+| ..+..+++|++|++++|. +..+ |..++++++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 8999999 99999999999996 9999986 568999999999999985 5545 45689999999999999
Q ss_pred CCCccccccccccccccccccceEec
Q 044382 184 TDSLEEMPLGIGKLTCLQTLCNFVVG 209 (543)
Q Consensus 184 ~~~~~~lp~~l~~l~~L~~L~~~~~~ 209 (543)
|. +..+|..+.....|+.|++..+.
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred Cc-cceeCHHHcccCCceEEEeeCCC
Confidence 99 77888664433338887654443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.3e-09 Score=87.84 Aligned_cols=89 Identities=11% Similarity=-0.011 Sum_probs=58.4
Q ss_pred ccceEEEcCCCCee-eecccCCCCCCceEEEcCCCCCcccCCCcCCCC----CCccEEecccCCCCccccccCccccccC
Q 044382 438 ALCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRI----PKLEELKINNIQNETCIWKSHNELLQDI 512 (543)
Q Consensus 438 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~----~~L~~L~l~~c~~l~~l~~~~~~~l~~l 512 (543)
.|+.|++++|.... -...+..+++|++|++++|..+++-.-..+..+ ++|++|++++|.++|.-... .+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHhcC
Confidence 34555555554221 112345678888888888887777443334332 46888888888888865432 56678
Q ss_pred CccceEeeccCCCCccc
Q 044382 513 CSLKRLLITSCPKLQSL 529 (543)
Q Consensus 513 ~~L~~L~l~~c~~l~~~ 529 (543)
++|++|++++||.++..
T Consensus 139 ~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCCEEEEESCTTCCCH
T ss_pred CCCCEEECCCCCCCCch
Confidence 88888888888888863
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-08 Score=98.55 Aligned_cols=137 Identities=14% Similarity=0.065 Sum_probs=98.2
Q ss_pred CCceEEEeeccccCCccchhhh-hcCCCceEEeecccCCCcccccccccccccc-ccCCeeeEEEecCCCccc-----cC
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDL-YDIQHLRTFLPVRLSNGFLSGYLACSILPKL-FKLQRLRVFSLRGYHIYE-----LP 120 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~Ls~~~l~~-----lp 120 (543)
.++++|+++.|.+..... ..+ ..+++|+ .+++++|.+...-...+...+ ...+.|++|+|++|.++. ++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~-~~l~~~L~~L~---~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGL-RTLLPVFLRAR---KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHH-HHTHHHHHTEE---EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHH-HHHHHHHHhcc---HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 689999999998743322 222 2334454 456999988763322333322 246789999999999874 45
Q ss_pred ccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCchhh----hhhHHHhhhcccceeecCCCCCccc
Q 044382 121 DSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRRLK----KLCADMGNLIKLHHLNDSNTDSLEE 189 (543)
Q Consensus 121 ~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~ 189 (543)
..+..+++|++|+|++|.++. ++..+...++|++|++++|.... .++..+...++|++|++++|. ++.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence 556789999999999998874 35667788899999999985432 334445677999999999999 543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-05 Score=78.37 Aligned_cols=77 Identities=6% Similarity=0.132 Sum_probs=39.6
Q ss_pred cCC-eeeEEEecCCCccccC-ccccCcccccEEecCCC---Cccccc-hhhhcccccceeecCCCchhhhhhH-HHhhhc
Q 044382 102 KLQ-RLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGT---VIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLI 174 (543)
Q Consensus 102 ~l~-~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~---~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~ 174 (543)
+++ .|+...+..+ ++.+. .+|.+|.+|+.+.+..+ .++.++ ..+..+.+|+.+.+..+ +..++. .+..+.
T Consensus 61 ~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCE 137 (394)
T ss_dssp TCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCT
T ss_pred CCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhc
Confidence 553 4677776543 55553 35677777777776654 244443 23445555555554432 222321 234455
Q ss_pred ccceeec
Q 044382 175 KLHHLND 181 (543)
Q Consensus 175 ~L~~L~l 181 (543)
+|+.+.+
T Consensus 138 ~L~~i~l 144 (394)
T 4gt6_A 138 ELDTVTI 144 (394)
T ss_dssp TCCEEEC
T ss_pred ccccccc
Confidence 5555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-07 Score=77.46 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=50.0
Q ss_pred cCCCCccceEEEcCCCCeeee--cccCC----CCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccc
Q 044382 433 IASLPALCKMEIGGCKKVVWR--SATDH----LGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 433 ~~~~~~L~~L~l~~~~~~~~~--~~~~~----~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
+..+++|++|+|++|..++.. ..+.. .++|++|+|++|+.+++-....+..+++|++|++++|++++..
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 345777777777777765521 11222 3579999999999898855445678899999999999999875
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.6e-07 Score=86.95 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCCCCceEEEcCCCCCcccCCCc--CCCCCCccEEecccCCCCccccccC-ccccccCCccceEeeccC
Q 044382 458 HLGSQNSVVCRDTSNQVFLSGPL--KPRIPKLEELKINNIQNETCIWKSH-NELLQDICSLKRLLITSC 523 (543)
Q Consensus 458 ~~~~L~~L~l~~c~~l~~l~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~-~~~l~~l~~L~~L~l~~c 523 (543)
.+++|++|.+.+|......+... ...+++|++|+++. +.++...... +..+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 35677777776653222111110 12456677777765 4555421000 123345667777777666
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=75.88 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=70.3
Q ss_pred hcCCCceEEeecccCCC-ccccccccccccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCccc--
Q 044382 70 YDIQHLRTFLPVRLSNG-FLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIRT-- 141 (543)
Q Consensus 70 ~~~~~L~~L~~~~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~-- 141 (543)
...+.|++|. +++| .+...-...+...+...+.|++|+|++|.++. +...+...+.|++|+|++|.++.
T Consensus 33 ~~~~~L~~L~---L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVN---LNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TTCTTCCEEE---CTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred hcCCCCCEEE---ecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3445555554 6666 55542222344445566778888888887763 33445556778888888887763
Q ss_pred ---cchhhhcccccceeec--CCCchhhh----hhHHHhhhcccceeecCCCC
Q 044382 142 ---LPESVNKLYNLHTLLL--EGCRRLKK----LCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 142 ---lp~~~~~l~~L~~L~l--~~~~~~~~----l~~~~~~l~~L~~L~l~~~~ 185 (543)
+...+...+.|++|++ ++|..... +...+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4555666777888888 66533222 33335556778888888777
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.1e-05 Score=73.24 Aligned_cols=107 Identities=7% Similarity=0.148 Sum_probs=71.9
Q ss_pred hhhhcCC-CceEEeecccCCCccccccccccccccccCCeeeEEEecCCC---ccccC-ccccCcccccEEecCCCCccc
Q 044382 67 EDLYDIQ-HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYH---IYELP-DSIGDLRYLRYLNLSGTVIRT 141 (543)
Q Consensus 67 ~~~~~~~-~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~---l~~lp-~~~~~l~~L~~L~L~~~~i~~ 141 (543)
.+|..+. .|+++. +-.+ +. .|.+.+|. ++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ ++.
T Consensus 57 ~aF~~~~~~L~sI~---iP~s-vt-~Ig~~AF~---~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQ---IPDT-VT-EIGSNAFY---NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp TTTTTCCSCCCEEE---ECTT-CC-EECTTTTT---TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred hhccCCCCcCEEEE---ECCC-ee-EEhHHHhh---CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 4455553 466665 3322 22 24445555 99999999998764 66674 45889999998887644 666
Q ss_pred cc-hhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCC
Q 044382 142 LP-ESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 142 lp-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 184 (543)
++ ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred ehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 64 45788999999999753 34444 33667888888887543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00018 Score=70.26 Aligned_cols=64 Identities=11% Similarity=-0.078 Sum_probs=38.2
Q ss_pred CCCccceEEEcCCCCeee-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcccc
Q 044382 435 SLPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIW 502 (543)
Q Consensus 435 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~ 502 (543)
.+++|+.+.+.++....+ ..+|.++++|+++.+.. .++.++..+|.++.+|+++.+.. .++.|.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence 344555555544433333 24566677777777754 46667766677777777777754 466664
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.1e-06 Score=75.99 Aligned_cols=59 Identities=31% Similarity=0.311 Sum_probs=27.8
Q ss_pred CcccccEEecCCCCcccc---chhhhcccccceeecCCCchhhhhhHHHhhhc--ccceeecCCCC
Q 044382 125 DLRYLRYLNLSGTVIRTL---PESVNKLYNLHTLLLEGCRRLKKLCADMGNLI--KLHHLNDSNTD 185 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~ 185 (543)
++++|++|+|++|.++.+ |..+..+++|+.|++++| .+..+. .+..+. +|++|++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCc
Confidence 445555555555555433 233445555555555554 232221 123333 55555555555
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-06 Score=75.33 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=82.0
Q ss_pred CCCceEEEeecc-ccCCccc---hhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc----
Q 044382 47 PKNLRHLSYIPE-YFDGGKR---FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE---- 118 (543)
Q Consensus 47 ~~~~~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~---- 118 (543)
...+++|++..| .+..... ...+...+.|++| ++++|.+...-...+...+...+.|++|+|++|.++.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L---~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKF---SIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEE---ECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEE---ECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 467999999998 7643221 1333444555555 5999988763333344555577899999999999884
Q ss_pred -cCccccCcccccEEec--CCCCccc-----cchhhhcccccceeecCCCc
Q 044382 119 -LPDSIGDLRYLRYLNL--SGTVIRT-----LPESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 119 -lp~~~~~l~~L~~L~L--~~~~i~~-----lp~~~~~l~~L~~L~l~~~~ 161 (543)
+...+...+.|++|+| ++|.++. +...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4566788889999999 8898873 45566777999999999984
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.83 E-value=1.9e-06 Score=78.89 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=61.8
Q ss_pred ccCCeeeEEEecCCCcccc---CccccCcccccEEecCCCCccccchhhhccc--ccceeecCCCchhhhhh-------H
Q 044382 101 FKLQRLRVFSLRGYHIYEL---PDSIGDLRYLRYLNLSGTVIRTLPESVNKLY--NLHTLLLEGCRRLKKLC-------A 168 (543)
Q Consensus 101 ~~l~~L~~L~Ls~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~l~-------~ 168 (543)
.++++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+ ..+..+. +|++|++++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3788999999999998865 35567899999999999999877 3355555 89999999986444332 3
Q ss_pred HHhhhcccceeec
Q 044382 169 DMGNLIKLHHLND 181 (543)
Q Consensus 169 ~~~~l~~L~~L~l 181 (543)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4678899998874
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00035 Score=68.26 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=76.6
Q ss_pred CCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCC
Q 044382 311 FLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGV 390 (543)
Q Consensus 311 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 390 (543)
..+|+.+.+......-.-..+..+..|+.+.+... ++.++... .....+|+.+.+.. .+..+... . +
T Consensus 216 ~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~a-----F~~~~~l~~i~l~~--~i~~i~~~-a---F 282 (379)
T 4h09_A 216 GKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFL-----LQNCTALKTLNFYA--KVKTVPYL-L---C 282 (379)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT--CCEECTTT-----TTTCTTCCEEEECC--CCSEECTT-T---T
T ss_pred ccccceeeeccceeEEccccccCCccceEEEcCCC--ccEeCccc-----cceeehhccccccc--cceecccc-c---c
Confidence 45666666654311111114556777777777542 44443222 22345566666543 12222111 1 3
Q ss_pred CCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDT 470 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c 470 (543)
..+++|+.+.+.+ +.++ .++. ..+..+.+|+.+.|...-...-..+|.++++|+++.+..
T Consensus 283 ~~c~~L~~i~l~~-~~i~-~I~~-----------------~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~- 342 (379)
T 4h09_A 283 SGCSNLTKVVMDN-SAIE-TLEP-----------------RVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK- 342 (379)
T ss_dssp TTCTTCCEEEECC-TTCC-EECT-----------------TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT-
T ss_pred ccccccccccccc-cccc-eehh-----------------hhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC-
Confidence 5677777777765 3444 3331 134445666666664332211235788899999998865
Q ss_pred CCCcccCCCcCCCCCC
Q 044382 471 SNQVFLSGPLKPRIPK 486 (543)
Q Consensus 471 ~~l~~l~~~~~~~~~~ 486 (543)
.++.+...+|.+++.
T Consensus 343 -~v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 343 -SITLIESGAFEGSSI 357 (379)
T ss_dssp -TCCEECTTTTTTSSC
T ss_pred -ccCEEchhHhhCCCC
Confidence 577888777876643
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.81 E-value=3e-05 Score=74.80 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=92.5
Q ss_pred CCceEEEeeccccCC-----c--cch-hhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc
Q 044382 48 KNLRHLSYIPEYFDG-----G--KRF-EDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL 119 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~-----~--~~~-~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l 119 (543)
.+++.|.+....... . ..+ ..+..+++|+.|. +++|... .+++ + .+++|++|++..|.++.-
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~---L~g~~~l-----~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLK---IKGTNNL-----SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEE---EECCBTC-----BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEE---EeCCCCc-----eecc-c-cCCCCcEEEEecCCCChH
Confidence 588889886543211 0 112 3345678888887 5444211 1222 2 378999999988886522
Q ss_pred -Cccc--cCcccccEEecCCC--------Cccccchhh--hcccccceeecCCCchhhhhhHHHh---hhcccceeecCC
Q 044382 120 -PDSI--GDLRYLRYLNLSGT--------VIRTLPESV--NKLYNLHTLLLEGCRRLKKLCADMG---NLIKLHHLNDSN 183 (543)
Q Consensus 120 -p~~~--~~l~~L~~L~L~~~--------~i~~lp~~~--~~l~~L~~L~l~~~~~~~~l~~~~~---~l~~L~~L~l~~ 183 (543)
...+ ..+++|++|+|+.+ .+..+...+ ..+++|++|++++|......+..+. .+++|++|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 2223 36889999988531 132332222 3578999999988755444443343 578999999998
Q ss_pred CCCccc-----cccccccccccccccceEe
Q 044382 184 TDSLEE-----MPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 184 ~~~~~~-----lp~~l~~l~~L~~L~~~~~ 208 (543)
|. ++. ++.++..+++|+.|++..+
T Consensus 289 n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 289 GV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 88 443 4455566788888876444
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0034 Score=50.45 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=16.8
Q ss_pred eeeEEEecCCCccccCcc-ccCcccccEEecCCCCc
Q 044382 105 RLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVI 139 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i 139 (543)
+|++|+|++|.|+.+|.. |..+++|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555554332 34445555555554433
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0024 Score=55.04 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=50.3
Q ss_pred cccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCch--h
Q 044382 96 ILPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRR--L 163 (543)
Q Consensus 96 ~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~--~ 163 (543)
+..++..-..|+.|+|++|.++. +.+.+..-+.|++|+|++|.|+. +.+.+..-+.|++|++++|.. +
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 34444456677777777777662 23334455667777777776662 233444445677777764321 2
Q ss_pred h-----hhhHHHhhhcccceeecCCCC
Q 044382 164 K-----KLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 164 ~-----~l~~~~~~l~~L~~L~l~~~~ 185 (543)
+ .+...+..-+.|+.|++..+.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1 223334445567777766554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.012 Score=47.14 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=43.1
Q ss_pred eEEEecCCCcc--ccCccccCcccccEEecCCCCccccchh-hhcccccceeecCCCch
Q 044382 107 RVFSLRGYHIY--ELPDSIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRR 162 (543)
Q Consensus 107 ~~L~Ls~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~ 162 (543)
.+++-+++.++ .+|..+ -.+|++|+|++|.++.+|.. +..+++|++|++++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36788888888 888654 34689999999999999654 67889999999998743
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.01 Score=51.10 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=77.3
Q ss_pred CCCceEEEeecc-ccCCc--cc-hhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc----
Q 044382 47 PKNLRHLSYIPE-YFDGG--KR-FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE---- 118 (543)
Q Consensus 47 ~~~~~~L~l~~~-~~~~~--~~-~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~---- 118 (543)
-..+++|++..+ .+... .. .+.+..-..|+.| ++++|.+...-...+...+..-+.|++|+|++|.|+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L---~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKF---SLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEE---ECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEE---EccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 356899999875 55322 11 2444444455555 5999988864444555566677899999999999883
Q ss_pred -cCccccCcccccEEecCCC---Ccc-----ccchhhhcccccceeecCCCc
Q 044382 119 -LPDSIGDLRYLRYLNLSGT---VIR-----TLPESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 119 -lp~~~~~l~~L~~L~L~~~---~i~-----~lp~~~~~l~~L~~L~l~~~~ 161 (543)
+.+.+..-+.|++|+|+++ .+. .+...+..-+.|..|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3455666677999999865 344 244556677899999998863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 543 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 8e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 34/234 (14%), Positives = 66/234 (28%), Gaps = 18/234 (7%)
Query: 119 LPDSIGDL--RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCR-RLKKLCADMGNLIK 175
PD G L + + + + + + + L + L + K
Sbjct: 13 HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 72
Query: 176 LHHLNDSNTDSLEEMPLGIGKLTCLQTL----CNFVVGKDSGSGLRELKSLIHLQGTLKI 231
L +L+ + + + K + L L C+ + L L L +
Sbjct: 73 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132
Query: 232 SKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQ 291
E + A + + NL N S L P+
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-----------STLVRRCPNLVHLD 181
Query: 292 FGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGM 345
++L ++L + L +G++P+LK L V G+
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 8e-04
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 81 VRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIR 140
V+L+ + + R R LRGY I + + L ++ S IR
Sbjct: 1 VKLTAELIEQ------AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR 54
Query: 141 TLPESVNKLYNLHTLLLEGC 160
L L L TLL+
Sbjct: 55 KLD-GFPLLRRLKTLLVNNN 73
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 107 RVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKL 166
RV L + L + L + +L+LS +R LP ++ L L L
Sbjct: 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 167 CADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL 203
++ L ++ + L L
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLL 95
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.3 bits (87), Expect = 0.002
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 7/147 (4%)
Query: 31 YFTMEYTSEVNKQQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSG 90
+ + S +Y+ + + + L +++ + L N +
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270
Query: 91 YLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLY 150
+ I L ++ + ELP L L S + +PE
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL---PQ 324
Query: 151 NLHTLLLEGCRRLKKLCADMGNLIKLH 177
NL L +E L++ ++ L
Sbjct: 325 NLKQLHVEYN-PLREFPDIPESVEDLR 350
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.89 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.87 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.79 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.77 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.75 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.73 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.72 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.7 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.65 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.62 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.58 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.55 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.52 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.51 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.51 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.5 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.45 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.43 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.39 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.36 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.34 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.32 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.32 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.3 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.28 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.23 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.21 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.21 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.96 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.87 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.74 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.72 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.7 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.8 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.7 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.39 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.13 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.98 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.11 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.89 E-value=1.4e-22 Score=198.98 Aligned_cols=339 Identities=17% Similarity=0.180 Sum_probs=185.5
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
.+.+|++|+++++.++.+ +.+..+++|++|++++|.++++|+ ++.+++|++|++++| .+..++. ++.+++|+.|++
T Consensus 42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L~~L~~ 117 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 117 (384)
T ss_dssp HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-ccccccc-cccccccccccc
Confidence 667889999999988877 457888999999999999988864 888999999999987 4555554 788899999999
Q ss_pred CCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
.++. ...++.. .....+..+........... ........+ ........ ... ..+.............
T Consensus 118 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~--~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~ 184 (384)
T d2omza2 118 FNNQ-ITDIDPL-KNLTNLNRLELSSNTISDIS---ALSGLTSLQ--QLSFGNQV-TDL-----KPLANLTTLERLDISS 184 (384)
T ss_dssp CSSC-CCCCGGG-TTCTTCSEEEEEEEEECCCG---GGTTCTTCS--EEEEEESC-CCC-----GGGTTCTTCCEEECCS
T ss_pred cccc-ccccccc-cccccccccccccccccccc---ccccccccc--cccccccc-chh-----hhhccccccccccccc
Confidence 8887 4443321 12222222211111100000 000000000 00000000 000 0011111111111111
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceee
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLT 341 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 341 (543)
+.. ........+++++.+.++++....++.+. ..++|++|++++|.. ..++.+..+++|+.++
T Consensus 185 ~~~-------------~~~~~~~~l~~~~~l~l~~n~i~~~~~~~---~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~ 247 (384)
T d2omza2 185 NKV-------------SDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQL-KDIGTLASLTNLTDLD 247 (384)
T ss_dssp SCC-------------CCCGGGGGCTTCSEEECCSSCCCCCGGGG---GCTTCCEEECCSSCC-CCCGGGGGCTTCSEEE
T ss_pred ccc-------------ccccccccccccceeeccCCccCCCCccc---ccCCCCEEECCCCCC-CCcchhhcccccchhc
Confidence 111 01122223445555555554443333211 134555555555532 2333444455555555
Q ss_pred ecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC--CCCCCcc
Q 044382 342 VRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP--EHLPALE 419 (543)
Q Consensus 342 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp--~~l~~L~ 419 (543)
+++|. ++.+ .. ++.+++|++|+++++ .++ .++ ..++.++
T Consensus 248 l~~n~-l~~~------------------------------~~------~~~~~~L~~L~l~~~-~l~-~~~~~~~~~~l~ 288 (384)
T d2omza2 248 LANNQ-ISNL------------------------------AP------LSGLTKLTELKLGAN-QIS-NISPLAGLTALT 288 (384)
T ss_dssp CCSSC-CCCC------------------------------GG------GTTCTTCSEEECCSS-CCC-CCGGGTTCTTCS
T ss_pred cccCc-cCCC------------------------------Cc------ccccccCCEeeccCc-ccC-CCCccccccccc
Confidence 55442 1111 11 234445555555442 333 222 2344444
Q ss_pred EEEEecccCcc-cccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCC
Q 044382 420 MLVIVECNELS-ISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNE 498 (543)
Q Consensus 420 ~L~l~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l 498 (543)
.+.+.++.... ..+..+++++.|++++|....++ .+..+++|++|++++| .+++++. +..+++|++|++++ +++
T Consensus 289 ~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~--l~~l~~L~~L~l~~-N~l 363 (384)
T d2omza2 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANN-KVSDVSS--LANLTNINWLSAGH-NQI 363 (384)
T ss_dssp EEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCS-SCC
T ss_pred cccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCC-CCCCChh--HcCCCCCCEEECCC-CcC
Confidence 44444432211 13555788888999888776554 4677999999999996 7887763 78899999999988 478
Q ss_pred ccccccCccccccCCccceEeeccC
Q 044382 499 TCIWKSHNELLQDICSLKRLLITSC 523 (543)
Q Consensus 499 ~~l~~~~~~~l~~l~~L~~L~l~~c 523 (543)
+.++ .+..+++|+.|+++++
T Consensus 364 ~~l~-----~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 364 SDLT-----PLANLTRITQLGLNDQ 383 (384)
T ss_dssp CBCG-----GGTTCTTCSEEECCCE
T ss_pred CCCh-----hhccCCCCCEeeCCCC
Confidence 8884 4788999999999864
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.87 E-value=2.8e-21 Score=189.57 Aligned_cols=341 Identities=18% Similarity=0.225 Sum_probs=214.8
Q ss_pred cCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhccc
Q 044382 71 DIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLY 150 (543)
Q Consensus 71 ~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~ 150 (543)
++.++++|. ++++.+.. ...+..+++|++|++++|+++.+|. ++++++|++|++++|.+..+++ ++.++
T Consensus 42 ~l~~l~~L~---l~~~~I~~------l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~ 110 (384)
T d2omza2 42 DLDQVTTLQ---ADRLGIKS------IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLT 110 (384)
T ss_dssp HHTTCCEEE---CCSSCCCC------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred HhCCCCEEE---CCCCCCCC------ccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-ccccc
Confidence 345666665 77776663 2345588899999999999988864 8899999999999999988754 78899
Q ss_pred ccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhcccccccccee
Q 044382 151 NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLK 230 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~ 230 (543)
+|+.|+++++ ....++. ......+..+....+. +..+.... ... .......... ......+....... ...
T Consensus 111 ~L~~L~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~-~~~-~~~~~~~~~~---~~~~~~~~~~~~~~-~~~ 181 (384)
T d2omza2 111 NLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDISALS-GLT-SLQQLSFGNQ---VTDLKPLANLTTLE-RLD 181 (384)
T ss_dssp TCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGT-TCT-TCSEEEEEES---CCCCGGGTTCTTCC-EEE
T ss_pred cccccccccc-ccccccc-cccccccccccccccc-cccccccc-ccc-cccccccccc---cchhhhhccccccc-ccc
Confidence 9999999886 4444443 3444566666655544 22221110 000 0000000010 11111111111111 000
Q ss_pred cccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCC
Q 044382 231 ISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSS 310 (543)
Q Consensus 231 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 310 (543)
.. . ...........+++++.+.++.+...+. ......++|+.+++.++....++. +. .
T Consensus 182 ~~--~----~~~~~~~~~~~l~~~~~l~l~~n~i~~~-------------~~~~~~~~L~~L~l~~n~l~~~~~-l~--~ 239 (384)
T d2omza2 182 IS--S----NKVSDISVLAKLTNLESLIATNNQISDI-------------TPLGILTNLDELSLNGNQLKDIGT-LA--S 239 (384)
T ss_dssp CC--S----SCCCCCGGGGGCTTCSEEECCSSCCCCC-------------GGGGGCTTCCEEECCSSCCCCCGG-GG--G
T ss_pred cc--c----cccccccccccccccceeeccCCccCCC-------------CcccccCCCCEEECCCCCCCCcch-hh--c
Confidence 00 0 0011112256678888998877765321 223456789999999998776653 33 3
Q ss_pred CCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCC
Q 044382 311 FLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGV 390 (543)
Q Consensus 311 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 390 (543)
+++|+.|++.+|.. ..++.++.+++|++|+++++. ++.+.. ...++.++.+.+..+. ++.... .
T Consensus 240 l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~~~-l~~~~~-------~~~~~~l~~l~~~~n~-l~~~~~------~ 303 (384)
T d2omza2 240 LTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQ-ISNISP-------LAGLTALTNLELNENQ-LEDISP------I 303 (384)
T ss_dssp CTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSC-CCCCGG-------GTTCTTCSEEECCSSC-CSCCGG------G
T ss_pred ccccchhccccCcc-CCCCcccccccCCEeeccCcc-cCCCCc-------cccccccccccccccc-cccccc------c
Confidence 88999999999864 556668889999999998773 322211 2346677777776642 222211 3
Q ss_pred CCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDT 470 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c 470 (543)
..+++++.|+++++ +++ .++ .+..+++|++|++++|....++ .+..+++|++|++++|
T Consensus 304 ~~~~~l~~L~ls~n-~l~-~l~-------------------~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N 361 (384)
T d2omza2 304 SNLKNLTYLTLYFN-NIS-DIS-------------------PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN 361 (384)
T ss_dssp GGCTTCSEEECCSS-CCS-CCG-------------------GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS
T ss_pred chhcccCeEECCCC-CCC-CCc-------------------ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCC
Confidence 56778888888874 666 332 2445778888888888655554 5777899999999885
Q ss_pred CCCcccCCCcCCCCCCccEEeccc
Q 044382 471 SNQVFLSGPLKPRIPKLEELKINN 494 (543)
Q Consensus 471 ~~l~~l~~~~~~~~~~L~~L~l~~ 494 (543)
.++++++ ++.+++|++|++++
T Consensus 362 -~l~~l~~--l~~l~~L~~L~L~~ 382 (384)
T d2omza2 362 -QISDLTP--LANLTRITQLGLND 382 (384)
T ss_dssp -CCCBCGG--GTTCTTCSEEECCC
T ss_pred -cCCCChh--hccCCCCCEeeCCC
Confidence 7777764 68899999999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.79 E-value=4.1e-20 Score=175.60 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=90.7
Q ss_pred eecccCCCccccccccccccccccCCeeeEEEecC-CCcc-ccCccccCcccccEEecCCCCcccc-chhhhccccccee
Q 044382 79 LPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRG-YHIY-ELPDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTL 155 (543)
Q Consensus 79 ~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~-~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L 155 (543)
..+++++|.+.+.. .+|++++++++|++|+|++ |.++ .+|.+|+++++|++|+|++|.+..+ |..+..+.+|+++
T Consensus 53 ~~L~L~~~~l~g~~--~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 53 NNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEECCCCCCCCCC--CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 33347777666521 2456777888888888886 5665 6788888888888888888888865 5567788888888
Q ss_pred ecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccc
Q 044382 156 LLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200 (543)
Q Consensus 156 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 200 (543)
++++|.....+|..++.+++|+++++++|.+.+.+|..+..+..+
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l 175 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred ccccccccccCchhhccCcccceeecccccccccccccccccccc
Confidence 888887777778778888888888888888666777777766655
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.77 E-value=9.6e-18 Score=158.35 Aligned_cols=86 Identities=27% Similarity=0.357 Sum_probs=50.7
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHHHhhhcccceeecCC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSN 183 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 183 (543)
..+.++-++..++.+|..+. +++++|+|++|.++++|+ ++.++++|++|++++|......|..+..+++|++|++++
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 34455555555666665542 456666666666666654 456666666666666533322244466677777777777
Q ss_pred CCCccccccc
Q 044382 184 TDSLEEMPLG 193 (543)
Q Consensus 184 ~~~~~~lp~~ 193 (543)
|+ ++.+|..
T Consensus 89 n~-l~~l~~~ 97 (305)
T d1xkua_ 89 NQ-LKELPEK 97 (305)
T ss_dssp SC-CSBCCSS
T ss_pred Cc-cCcCccc
Confidence 76 5555543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=1.9e-17 Score=156.27 Aligned_cols=100 Identities=23% Similarity=0.300 Sum_probs=80.1
Q ss_pred cccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCcccc-chhhhcccccceeecC
Q 044382 81 VRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLE 158 (543)
Q Consensus 81 ~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~ 158 (543)
++++++.+.. +|..+|+ .+++|+|++|+++.+|+ +|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 15 ~~C~~~~L~~-lP~~l~~------~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 15 VQCSDLGLEK-VPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp EECTTSCCCS-CCCSCCT------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EEecCCCCCc-cCCCCCC------CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 3577777773 4555554 79999999999999976 689999999999999999988 6678999999999999
Q ss_pred CCchhhhhhHHHhhhcccceeecCCCCCccccc
Q 044382 159 GCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP 191 (543)
Q Consensus 159 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp 191 (543)
+| .+..+|.. ....+..|++.+|. +..++
T Consensus 88 ~n-~l~~l~~~--~~~~l~~L~~~~n~-l~~l~ 116 (305)
T d1xkua_ 88 KN-QLKELPEK--MPKTLQELRVHENE-ITKVR 116 (305)
T ss_dssp SS-CCSBCCSS--CCTTCCEEECCSSC-CCBBC
T ss_pred CC-ccCcCccc--hhhhhhhhhccccc-hhhhh
Confidence 97 57777753 34578888888887 55443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.73 E-value=2.3e-18 Score=163.28 Aligned_cols=103 Identities=22% Similarity=0.339 Sum_probs=89.8
Q ss_pred CeeeEEEecCCCcc---ccCccccCcccccEEecCC-CCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccce
Q 044382 104 QRLRVFSLRGYHIY---ELPDSIGDLRYLRYLNLSG-TVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~---~lp~~~~~l~~L~~L~L~~-~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 178 (543)
.+++.|+|+++.+. .+|.+++++++|++|+|++ |.++ .+|.+++++++|++|++++|...+..+..+..+.+|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 47999999999877 5789999999999999987 6777 79999999999999999998655556666889999999
Q ss_pred eecCCCCCccccccccccccccccccce
Q 044382 179 LNDSNTDSLEEMPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 179 L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 206 (543)
++++.|.....+|..++.++.++.+++.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~ 157 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred cccccccccccCchhhccCcccceeecc
Confidence 9999999777888889999888888543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.72 E-value=4.6e-16 Score=149.86 Aligned_cols=88 Identities=23% Similarity=0.182 Sum_probs=50.8
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCc
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~ 161 (543)
+++++.++. + |. ..++|++|++++|+++.+|..+ .+|+.|++++|.++.++.. .+.|++|++++|
T Consensus 44 dLs~~~L~~-l----p~---~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n- 108 (353)
T d1jl5a_ 44 ELNNLGLSS-L----PE---LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN- 108 (353)
T ss_dssp ECTTSCCSC-C----CS---CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-
T ss_pred EeCCCCCCC-C----CC---CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---cccccccccccc-
Confidence 366666653 2 22 2346667777777776666543 4566666666666655421 134666666665
Q ss_pred hhhhhhHHHhhhcccceeecCCCC
Q 044382 162 RLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 162 ~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
.+..+|. ++.+++|++|++.++.
T Consensus 109 ~l~~lp~-~~~l~~L~~L~l~~~~ 131 (353)
T d1jl5a_ 109 QLEKLPE-LQNSSFLKIIDVDNNS 131 (353)
T ss_dssp CCSSCCC-CTTCTTCCEEECCSSC
T ss_pred ccccccc-hhhhccceeecccccc
Confidence 3555553 4566666666666665
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.70 E-value=1.4e-15 Score=146.39 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=30.5
Q ss_pred CCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecc
Q 044382 436 LPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKIN 493 (543)
Q Consensus 436 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~ 493 (543)
+++|+.|++++|....++.. +++|++|++++| .++.+|.. ..+|+.|.+.
T Consensus 303 ~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N-~L~~lp~~----~~~L~~L~~~ 352 (353)
T d1jl5a_ 303 PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYN-PLREFPDI----PESVEDLRMN 352 (353)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCCCC----CTTCCEEECC
T ss_pred cCCCCEEECCCCcCCccccc---cCCCCEEECcCC-cCCCCCcc----ccccCeeECc
Confidence 45555666665554444432 567888888886 47777742 3466766654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-16 Score=145.17 Aligned_cols=116 Identities=24% Similarity=0.200 Sum_probs=83.1
Q ss_pred EeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccchhhhcccccceee
Q 044382 78 FLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLL 156 (543)
Q Consensus 78 L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~ 156 (543)
+..++++++.++. +|..+|+ .+++|+|++|.++.+| .+|.++++|++|+|++|.++.+|. ++.+++|++|+
T Consensus 12 ~~~v~C~~~~L~~-iP~~lp~------~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~ 83 (266)
T d1p9ag_ 12 HLEVNCDKRNLTA-LPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD 83 (266)
T ss_dssp CCEEECTTSCCSS-CCSCCCT------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred CeEEEccCCCCCe-eCcCcCc------CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence 3344688887774 5555544 6888899999888876 458888999999999998888864 46788888888
Q ss_pred cCCCchhhhhhHHHhhhcccceeecCCCCCccccc-cccccccccccc
Q 044382 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTL 203 (543)
Q Consensus 157 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L 203 (543)
+++| .+...+..+..+++|+.|+++++. ...++ ..+..+.+++.|
T Consensus 84 Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L 129 (266)
T d1p9ag_ 84 LSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQEL 129 (266)
T ss_dssp CCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEE
T ss_pred cccc-cccccccccccccccccccccccc-cceeeccccccccccccc
Confidence 8887 455566667788888888888887 44433 234444444444
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.5e-15 Score=138.23 Aligned_cols=197 Identities=23% Similarity=0.226 Sum_probs=129.3
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
+...+...+.+++.++.+|..+. ++|++|+|++|.++.+| ..+..+++|++|++++| .+..+|. ++.+++|++|+
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~ 83 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLD 83 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEE
T ss_pred ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccc
Confidence 45566667999999999998764 68999999999999996 56889999999999998 5677765 67899999999
Q ss_pred cCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeee
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (543)
+++|+ +...+..+..+++|+.|++....... .....+..+.+++.|.+.
T Consensus 84 Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~------------------------------~~~~~~~~l~~l~~L~l~ 132 (266)
T d1p9ag_ 84 LSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS------------------------------LPLGALRGLGELQELYLK 132 (266)
T ss_dssp CCSSC-CSSCCCCTTTCTTCCEEECCSSCCCC------------------------------CCSSTTTTCTTCCEEECT
T ss_pred ccccc-ccccccccccccccccccccccccce------------------------------eecccccccccccccccc
Confidence 99998 77777777778888777542221100 000114455666666666
Q ss_pred eecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccce
Q 044382 261 WTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKH 339 (543)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~ 339 (543)
+|.....++ ..+..+++++.+++++|....++..... .+++|++|++++|.. ..+| .+..+++|+.
T Consensus 133 ~n~l~~l~~-----------~~~~~l~~l~~l~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~L-~~lp~~~~~~~~L~~ 199 (266)
T d1p9ag_ 133 GNELKTLPP-----------GLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSL-YTIPKGFFGSHLLPF 199 (266)
T ss_dssp TSCCCCCCT-----------TTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCC-CCCCTTTTTTCCCSE
T ss_pred ccccceecc-----------ccccccccchhcccccccccccCccccc-cccccceeecccCCC-cccChhHCCCCCCCE
Confidence 555432211 2233455666666666665554433221 256666666666643 3444 4555666666
Q ss_pred eeecCcc
Q 044382 340 LTVRGMS 346 (543)
Q Consensus 340 L~l~~~~ 346 (543)
|+|++|+
T Consensus 200 L~L~~Np 206 (266)
T d1p9ag_ 200 AFLHGNP 206 (266)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 6666653
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.4e-15 Score=137.01 Aligned_cols=214 Identities=20% Similarity=0.164 Sum_probs=137.1
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~ 159 (543)
.+++..+. .+|..+|. .+++|+|++|+++.+|. +|.++++|++|++++|.+..++ ..+..++.++.++...
T Consensus 17 ~c~~~~L~-~iP~~ip~------~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~ 89 (284)
T d1ozna_ 17 SCPQQGLQ-AVPVGIPA------ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (284)
T ss_dssp ECCSSCCS-SCCTTCCT------TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EcCCCCCC-ccCCCCCC------CCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence 35555555 35555554 57889999999988865 5888999999999999888774 4456788888888776
Q ss_pred Cchhhhhh-HHHhhhcccceeecCCCCCccccc-cccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
+..+..++ ..+.++++|++|++++|. ...++ ..+...++|+.+.+.... +
T Consensus 90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~---------------l------------ 141 (284)
T d1ozna_ 90 NAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA---------------L------------ 141 (284)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC---------------C------------
T ss_pred ccccccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhcccc---------------c------------
Confidence 55666664 457788899999998888 44443 345556666655322110 0
Q ss_pred CCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCC-CCCCCCCCCCCccE
Q 044382 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF-PTWLGDSSFLNLVT 316 (543)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~ 316 (543)
.......++.+++|++|++++|..... ....+..+++|+.+.++++....+ +.++.. +++|++
T Consensus 142 ---~~i~~~~f~~~~~L~~L~l~~N~l~~l-----------~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~--l~~L~~ 205 (284)
T d1ozna_ 142 ---QALPDDTFRDLGNLTHLFLHGNRISSV-----------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMT 205 (284)
T ss_dssp ---CCCCTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCE
T ss_pred ---cccChhHhccccchhhcccccCccccc-----------chhhhccccccchhhhhhccccccChhHhhh--hhhccc
Confidence 000111255666777777776664211 113445567777777777765544 334443 677777
Q ss_pred EEeecCCCCCCCC-CCCCCCccceeeecCcc
Q 044382 317 LKFEDCGMCTALP-SVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 317 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 346 (543)
|++++|...+..+ .++.+++|++|++++|+
T Consensus 206 L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 206 LYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccccccccccccccccccccCEEEecCCC
Confidence 7777776544333 56677777777777764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=1.8e-15 Score=135.73 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhccccc
Q 044382 73 QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNL 152 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L 152 (543)
+.|+.+...++..+...+. ..+..+.+|+.|++.+|.++.++ .+..+++|++|++++|.++.+++ +..+++|
T Consensus 16 ~~l~~~~~~~l~~~~~~d~------~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l 87 (227)
T d1h6ua2 16 PALANAIKIAAGKSNVTDT------VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKI 87 (227)
T ss_dssp HHHHHHHHHHTTCSSTTSE------ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSC
T ss_pred HHHHHHHHHHhCCCCcCCc------CCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccc
Confidence 3344433344555555541 13346778888888888888773 57788888888888888877643 7788888
Q ss_pred ceeecCCCchhhhhhHHHhhhcccceeecCCCC
Q 044382 153 HTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 153 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
+++++++| .+..++. +.++++|+.++++++.
T Consensus 88 ~~l~~~~n-~~~~i~~-l~~l~~L~~l~l~~~~ 118 (227)
T d1h6ua2 88 TELELSGN-PLKNVSA-IAGLQSIKTLDLTSTQ 118 (227)
T ss_dssp CEEECCSC-CCSCCGG-GTTCTTCCEEECTTSC
T ss_pred cccccccc-ccccccc-cccccccccccccccc
Confidence 88888876 4455543 6778888888887776
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.7e-13 Score=127.21 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=61.8
Q ss_pred cCCCCccceEEEcCCCCeee-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCcccccc
Q 044382 433 IASLPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 511 (543)
Q Consensus 433 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 511 (543)
+...++|+.|++++|....+ +..+..+++|+++++++| .+..+++..|..+++|++|++++ ++++.++ +..+..
T Consensus 149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~---~~~~~~ 223 (284)
T d1ozna_ 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALP---TEALAP 223 (284)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCC---HHHHTT
T ss_pred hccccchhhcccccCcccccchhhhccccccchhhhhhc-cccccChhHhhhhhhcccccccc-ccccccc---cccccc
Confidence 44466777788877776554 346667788888888884 56666655677888888888888 5677775 446777
Q ss_pred CCccceEeeccCC
Q 044382 512 ICSLKRLLITSCP 524 (543)
Q Consensus 512 l~~L~~L~l~~c~ 524 (543)
+++|++|+++++|
T Consensus 224 ~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 224 LRALQYLRLNDNP 236 (284)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccccCEEEecCCC
Confidence 7888888887753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=6.9e-15 Score=128.75 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=54.6
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
.+.++++|++++|.++.++ .++.+++|++|++++|.++.+++ ++.+++|++|++++| .+..++. +.++++|+.|++
T Consensus 38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l 113 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 113 (199)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEC
T ss_pred HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccc-ccccccc-cccccccccccc
Confidence 5667777777777777663 36677777777777777776654 667777777777775 3444443 666777777777
Q ss_pred CCCC
Q 044382 182 SNTD 185 (543)
Q Consensus 182 ~~~~ 185 (543)
+++.
T Consensus 114 ~~~~ 117 (199)
T d2omxa2 114 FNNQ 117 (199)
T ss_dssp CSSC
T ss_pred cccc
Confidence 6665
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.52 E-value=1.6e-14 Score=127.47 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=62.4
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
.+..|++|++++|.++.++ .+..+++|++|++++|.+++++. ++.+++|++|++++| .+..+|. +..+++|+.|++
T Consensus 44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~l 119 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (210)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccc-ccccccc-cccccccccccc
Confidence 4667888888888887765 37778888888888888888763 677888888888886 5666664 777888888888
Q ss_pred CCCC
Q 044382 182 SNTD 185 (543)
Q Consensus 182 ~~~~ 185 (543)
.+|.
T Consensus 120 ~~~~ 123 (210)
T d1h6ta2 120 EHNG 123 (210)
T ss_dssp TTSC
T ss_pred cccc
Confidence 8777
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.1e-13 Score=122.21 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=140.9
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCc
Q 044382 290 EQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCL 367 (543)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 367 (543)
+.+..++.....+|..+ .+++++|++++|.. ..++ .+..+++|++|++++|...+.++... ...++++
T Consensus 11 ~~i~c~~~~l~~iP~~l----~~~l~~L~Ls~n~i-~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~-----f~~l~~l 80 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-----FSNLPKL 80 (242)
T ss_dssp SEEEEESCSCSSCCSCS----CSCCSEEEEESCCC-CEECTTTTTTCTTCCEEEEESCTTCCEECSSS-----EESCTTC
T ss_pred CEEEEeCCCCCCcCCCC----CCCCCEEECcCCcC-CccChhHhhccchhhhhhhccccccceeeccc-----ccccccc
Confidence 45555555555565433 23677778877754 3333 46677788888887775544443221 1236677
Q ss_pred CeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC--CCCCCccEEEEecccC--cc-c---ccCC-CCc
Q 044382 368 ETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP--EHLPALEMLVIVECNE--LS-I---SIAS-LPA 438 (543)
Q Consensus 368 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp--~~l~~L~~L~l~~~~~--l~-~---~~~~-~~~ 438 (543)
+++.+..+..+..+.... +..+++|++++++++ .++ ..+ ..+.+++.+....+.. +. . .+.. ...
T Consensus 81 ~~l~~~~~n~l~~~~~~~----~~~l~~L~~l~l~~~-~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~ 154 (242)
T d1xwdc1 81 HEIRIEKANNLLYINPEA----FQNLPNLQYLLISNT-GIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 154 (242)
T ss_dssp CEEEEECCTTCCEECTTS----EECCTTCCEEEEESC-CCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred cccccccccccccccccc----ccccccccccccchh-hhc-cccccccccccccccccccccccccccccccccccccc
Confidence 777766554444333221 357788888888884 565 333 2445555555443322 21 1 1222 347
Q ss_pred cceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceE
Q 044382 439 LCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 518 (543)
Q Consensus 439 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L 518 (543)
++.|++.++....++......++++++....++.++.+|...|..+++|++|++++ ++++.++ +..+..++.|+.+
T Consensus 155 l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~---~~~~~~l~~L~~l 230 (242)
T d1xwdc1 155 SVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLP---SYGLENLKKLRAR 230 (242)
T ss_dssp CEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCC---SSSCTTCCEEESS
T ss_pred ceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccC---HHHHcCCcccccC
Confidence 88899998888777777767788888887777899999988899999999999999 5799996 3366766667666
Q ss_pred eeccCCCCcccch
Q 044382 519 LITSCPKLQSLVA 531 (543)
Q Consensus 519 ~l~~c~~l~~~~~ 531 (543)
++. +++++|.
T Consensus 231 ~~~---~l~~lp~ 240 (242)
T d1xwdc1 231 STY---NLKKLPT 240 (242)
T ss_dssp SEE---SSSCSCC
T ss_pred cCC---CCCcCCC
Confidence 665 4555553
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.1e-15 Score=141.99 Aligned_cols=202 Identities=13% Similarity=0.183 Sum_probs=130.3
Q ss_pred CCCccEEEeecCCCCCC-CC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 311 FLNLVTLKFEDCGMCTA-LP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 311 l~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
..+|++|++++|..... +. .+..+++|++|++++|. ++...... ...+++|++|++++|..+++......
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~-----l~~~~~L~~L~Ls~c~~itd~~l~~l-- 116 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNT-----LAKNSNLVRLNLSGCSGFSEFALQTL-- 116 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHH-----HTTCTTCSEEECTTCBSCCHHHHHHH--
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHH-----HhcCCCCcCccccccccccccccchh--
Confidence 56889999988754332 22 45778899999998883 33222122 23478899999988877665433222
Q ss_pred CCCCCCcccEEeeccCcCccCC-----CCCCCCCccEEEEecccC-cc-----cccCCCCccceEEEcCCCCee--eecc
Q 044382 389 GVERFPKLRELHILRCSKLQGT-----FPEHLPALEMLVIVECNE-LS-----ISIASLPALCKMEIGGCKKVV--WRSA 455 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~-----lp~~l~~L~~L~l~~~~~-l~-----~~~~~~~~L~~L~l~~~~~~~--~~~~ 455 (543)
...+++|++|++++|.+++.. +....++|+.|.+.+|.. +. .....+++|++|++++|..++ ....
T Consensus 117 -~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~ 195 (284)
T d2astb2 117 -LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195 (284)
T ss_dssp -HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred -hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh
Confidence 346888999999998776521 123356788888887642 22 122347888888888887654 3445
Q ss_pred cCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCccc
Q 044382 456 TDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSL 529 (543)
Q Consensus 456 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~ 529 (543)
+..+++|++|++++|+.+++-....++.+++|++|++++|-.-..+ ......+++|+ + +|..++.+
T Consensus 196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l----~~l~~~lp~L~---i-~~~~ls~~ 261 (284)
T d2astb2 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL----QLLKEALPHLQ---I-NCSHFTTI 261 (284)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCH----HHHHHHSTTSE---E-SCCCSCCT
T ss_pred hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHH----HHHHHhCcccc---c-cCccCCCC
Confidence 6668888888888888877655444677888888888887322223 11223355554 3 56666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.2e-15 Score=138.71 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=132.8
Q ss_pred CCCCCccceeeecCccceeeeC-ccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC
Q 044382 331 VGQLPSLKHLTVRGMSRVNRLG-SKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG 409 (543)
Q Consensus 331 ~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 409 (543)
.....+|++|++++|. ++... ... ...+++|++|.+.++. +.+..... ++.+++|++|++++|+.++.
T Consensus 42 ~~~~~~L~~LdLs~~~-i~~~~l~~l-----~~~c~~L~~L~L~~~~-l~~~~~~~----l~~~~~L~~L~Ls~c~~itd 110 (284)
T d2astb2 42 HFSPFRVQHMDLSNSV-IEVSTLHGI-----LSQCSKLQNLSLEGLR-LSDPIVNT----LAKNSNLVRLNLSGCSGFSE 110 (284)
T ss_dssp CCCCBCCCEEECTTCE-ECHHHHHHH-----HTTBCCCSEEECTTCB-CCHHHHHH----HTTCTTCSEEECTTCBSCCH
T ss_pred hccCCCCCEEECCCCc-cCHHHHHHH-----HHhCCCcccccccccC-CCcHHHHH----HhcCCCCcCccccccccccc
Confidence 3456799999999883 32211 111 2447899999999974 33322222 35789999999999988862
Q ss_pred C----CCCCCCCccEEEEecccCccc-----cc-CCCCccceEEEcCCCC-ee---eecccCCCCCCceEEEcCCCCCcc
Q 044382 410 T----FPEHLPALEMLVIVECNELSI-----SI-ASLPALCKMEIGGCKK-VV---WRSATDHLGSQNSVVCRDTSNQVF 475 (543)
Q Consensus 410 ~----lp~~l~~L~~L~l~~~~~l~~-----~~-~~~~~L~~L~l~~~~~-~~---~~~~~~~~~~L~~L~l~~c~~l~~ 475 (543)
. +...+++|++|++.+|..+.. .+ ...+.|+.|++++|.. .+ +...+..+++|++|++++|+.+++
T Consensus 111 ~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd 190 (284)
T d2astb2 111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 190 (284)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred cccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc
Confidence 1 224689999999999977642 12 2268999999998753 32 444456689999999999998887
Q ss_pred cCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccC
Q 044382 476 LSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSC 523 (543)
Q Consensus 476 l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c 523 (543)
-....+..+++|++|++++|+.++.-. ...+..+++|++|++++|
T Consensus 191 ~~~~~l~~~~~L~~L~L~~C~~i~~~~---l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 191 DCFQEFFQLNYLQHLSLSRCYDIIPET---LLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGG---GGGGGGCTTCCEEECTTS
T ss_pred hhhhhhcccCcCCEEECCCCCCCChHH---HHHHhcCCCCCEEeeeCC
Confidence 655557889999999999999988654 346788999999999999
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.50 E-value=1e-13 Score=124.14 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=83.3
Q ss_pred CCCCcccEEeeccCcCccCCCC-CCCCCccEEEEecccCcc-cccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEc
Q 044382 391 ERFPKLRELHILRCSKLQGTFP-EHLPALEMLVIVECNELS-ISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCR 468 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 468 (543)
..+++|+++.+++| ...+..+ ...+.++.+.+.++.... ..+...++|+.|++.+|...... .+..+++|++|+++
T Consensus 104 ~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls 181 (227)
T d1h6ua2 104 AGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKAD 181 (227)
T ss_dssp TTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECC
T ss_pred cccccccccccccc-cccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccC
Confidence 34555666666554 2221111 234455555555443322 13455778889999888765443 46779999999999
Q ss_pred CCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeecc
Q 044382 469 DTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITS 522 (543)
Q Consensus 469 ~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~ 522 (543)
+| .++++++ ++.+++|++|++++| +++.++ .+..+++|++|++++
T Consensus 182 ~n-~l~~l~~--l~~l~~L~~L~Ls~N-~lt~i~-----~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 182 DN-KISDISP--LASLPNLIEVHLKNN-QISDVS-----PLANTSNLFIVTLTN 226 (227)
T ss_dssp SS-CCCCCGG--GGGCTTCCEEECTTS-CCCBCG-----GGTTCTTCCEEEEEE
T ss_pred CC-ccCCChh--hcCCCCCCEEECcCC-cCCCCc-----ccccCCCCCEEEeeC
Confidence 96 7888765 688999999999996 799884 488899999999874
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=5.9e-14 Score=111.80 Aligned_cols=101 Identities=25% Similarity=0.277 Sum_probs=75.3
Q ss_pred cccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCC
Q 044382 81 VRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 81 ~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~ 160 (543)
+++++|.++. ++.+.++++|++|++++|.++.+|+.++.+++|++|++++|.++.+| .+..+++|++|++++|
T Consensus 3 L~Ls~n~l~~------l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 3 LHLAHKDLTV------LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp EECTTSCCSS------CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred EEcCCCCCCC------CcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC
Confidence 4577777764 13355788888888888888888877888888888888888888875 4778888888888886
Q ss_pred chhhhhh--HHHhhhcccceeecCCCCCcccc
Q 044382 161 RRLKKLC--ADMGNLIKLHHLNDSNTDSLEEM 190 (543)
Q Consensus 161 ~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~l 190 (543)
.+..++ ..++.+++|++|++++|. +...
T Consensus 76 -~i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~ 105 (124)
T d1dcea3 76 -RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQE 105 (124)
T ss_dssp -CCCSSSTTGGGGGCTTCCEEECTTSG-GGGS
T ss_pred -ccCCCCCchhhcCCCCCCEEECCCCc-CCcC
Confidence 454443 346778888888888887 4443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.43 E-value=3.8e-13 Score=117.45 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=100.3
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~ 127 (543)
.++++|++..+.+... +.+..+++|++|. +++|.+.+ + +.+.++++|++|++++|.+..++. +.+++
T Consensus 40 ~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~---Ls~N~l~~-----~-~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~ 106 (199)
T d2omxa2 40 DQVTTLQADRLGIKSI---DGVEYLNNLTQIN---FSNNQLTD-----I-TPLKNLTKLVDILMNNNQIADITP-LANLT 106 (199)
T ss_dssp TTCCEEECTTSCCCCC---TTGGGCTTCCEEE---CCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred cCCCEEECCCCCCCCc---cccccCCCcCcCc---cccccccC-----c-ccccCCcccccccccccccccccc-ccccc
Confidence 5678888888776443 3455566666665 77777775 1 225578888888888888776653 77888
Q ss_pred cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceE
Q 044382 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFV 207 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~ 207 (543)
+|++|++++|....++ .+..+++|+.|++++| .+..++. +..+++|+.|++.+|. +..++ .++.+++|+.|++..
T Consensus 107 ~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~ 181 (199)
T d2omxa2 107 NLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISS 181 (199)
T ss_dssp TCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCS
T ss_pred cccccccccccccccc-ccchhhhhHHhhhhhh-hhccccc-cccccccccccccccc-ccCCc-cccCCCCCCEEECCC
Confidence 8888888888777653 4667888888888886 3455543 7778888888888887 55554 367777777776543
Q ss_pred e
Q 044382 208 V 208 (543)
Q Consensus 208 ~ 208 (543)
+
T Consensus 182 N 182 (199)
T d2omxa2 182 N 182 (199)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.39 E-value=8.4e-13 Score=116.20 Aligned_cols=140 Identities=19% Similarity=0.285 Sum_probs=89.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~ 127 (543)
.++++|++..+.+.... .+..+++|++|. +++|.+.+ .+.++.+++|++|++++|.++.+| .+..++
T Consensus 46 ~~L~~L~l~~~~i~~l~---~l~~l~~L~~L~---L~~n~i~~------l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~ 112 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ---GIQYLPNVTKLF---LNGNKLTD------IKPLANLKNLGWLFLDENKVKDLS-SLKDLK 112 (210)
T ss_dssp HTCCEEECTTSCCCCCT---TGGGCTTCCEEE---CCSSCCCC------CGGGTTCTTCCEEECCSSCCCCGG-GGTTCT
T ss_pred cCccEEECcCCCCCCch---hHhhCCCCCEEe---CCCccccC------ccccccCccccccccccccccccc-cccccc
Confidence 35777777777664432 344566666664 77776664 123446777777777777777665 366777
Q ss_pred cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
+|++|++++|.+..++ .+..+++|+.+++++|. +...+ .+..+++|+++++++|. +..++ .++.+++|++|++
T Consensus 113 ~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~-l~~i~-~l~~l~~L~~L~L 185 (210)
T d1h6ta2 113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYL 185 (210)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEEC
T ss_pred cccccccccccccccc-ccccccccccccccccc-ccccc-ccccccccccccccccc-ccccc-cccCCCCCCEEEC
Confidence 7777777777776654 46677777777777753 33333 35667777777777777 45543 3566666666643
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=3.1e-13 Score=113.22 Aligned_cols=123 Identities=19% Similarity=0.158 Sum_probs=86.2
Q ss_pred cCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchh-hhcc
Q 044382 71 DIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPES-VNKL 149 (543)
Q Consensus 71 ~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l 149 (543)
+..++|.| ++++|.+.. ++ .++ ..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|.. +..+
T Consensus 16 n~~~lr~L---~L~~n~I~~-i~-~~~---~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l 86 (162)
T d1a9na_ 16 NAVRDREL---DLRGYKIPV-IE-NLG---ATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQAL 86 (162)
T ss_dssp CTTSCEEE---ECTTSCCCS-CC-CGG---GGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CcCcCcEE---ECCCCCCCc-cC-ccc---cccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccc
Confidence 34445554 488887774 22 222 36788888888888888774 477888888888888888888655 4568
Q ss_pred cccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCcccccc----cccccccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPL----GIGKLTCLQTLC 204 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~ 204 (543)
++|++|++++| .+..++ ..+..+++|++|++.+|. +...|. .++.+++|+.|+
T Consensus 87 ~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 87 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred cccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence 88888888887 444444 236778888888888888 665553 256677777764
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.34 E-value=1.2e-12 Score=113.49 Aligned_cols=111 Identities=19% Similarity=0.174 Sum_probs=67.9
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-c
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-S 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~ 122 (543)
..++.++++|+++.|.+........|..+++|+.|. +++|.+.. ++.. .+..++.|++|+|++|+++.+|. +
T Consensus 25 ~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~---L~~N~i~~-~~~~---~~~~~~~L~~L~Ls~N~l~~l~~~~ 97 (192)
T d1w8aa_ 25 RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLE---LKRNQLTG-IEPN---AFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEE---CCSSCCCC-BCTT---TTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CCCCCCCCEEEeCCCCCcccccccccCCCceEeeee---cccccccc-cccc---ccccccccceeeeccccccccCHHH
Confidence 445666777777777765433335555566666654 66666664 2222 33366677777777777666643 4
Q ss_pred ccCcccccEEecCCCCccccch-hhhcccccceeecCCCc
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 161 (543)
|.++++|++|+|++|.++.+|+ .+..+++|++|++++|.
T Consensus 98 F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence 6677777777777777776643 45666777777776653
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3.8e-12 Score=114.91 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=78.7
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccc-c-chhhhcccccceeecC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRT-L-PESVNKLYNLHTLLLE 158 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~-l-p~~~~~l~~L~~L~l~ 158 (543)
+++++.+. .+|..+|. ++++|++++|.++.+|. .|.++++|++|++++|.+.. + +..+..+++++++++.
T Consensus 14 ~c~~~~l~-~iP~~l~~------~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 14 LCQESKVT-EIPSDLPR------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp EEESCSCS-SCCSCSCS------CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred EEeCCCCC-CcCCCCCC------CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 35555555 35545543 68899999999988876 58889999999999998764 4 3457788899998887
Q ss_pred CCchhhhhh-HHHhhhcccceeecCCCCCccccccccccccccccc
Q 044382 159 GCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL 203 (543)
Q Consensus 159 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 203 (543)
.+..+..++ ..+.++++|+++++.++. +...+. +..+..++.+
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~-~~~~~~l~~l 130 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPD-VHKIHSLQKV 130 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCC-CTTTCBSSCE
T ss_pred ccccccccccccccccccccccccchhh-hccccc-cccccccccc
Confidence 654555444 446788899999998887 544432 3344444444
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=9.4e-13 Score=104.69 Aligned_cols=96 Identities=24% Similarity=0.240 Sum_probs=83.8
Q ss_pred eEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCC
Q 044382 107 RVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDS 186 (543)
Q Consensus 107 ~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 186 (543)
|+|+|++|+++.++. +..+++|++|++++|.++++|+.++.+++|++|++++| .+..+|. ++.+++|++|++++|+
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~N~- 76 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNR- 76 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCc-cccccccCeEECCCCc-
Confidence 689999999998874 89999999999999999999999999999999999997 6777765 8999999999999999
Q ss_pred cccccc--ccccccccccccce
Q 044382 187 LEEMPL--GIGKLTCLQTLCNF 206 (543)
Q Consensus 187 ~~~lp~--~l~~l~~L~~L~~~ 206 (543)
+..+|. .++.+++|+.|++.
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~ 98 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQ 98 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECT
T ss_pred cCCCCCchhhcCCCCCCEEECC
Confidence 776653 47777888887543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4e-14 Score=141.11 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=69.7
Q ss_pred eecccCCCccccccccccccccccCCeeeEEEecCCCcc-----ccCccccCcccccEEecCCCCcccc-----chhhh-
Q 044382 79 LPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-----ELPDSIGDLRYLRYLNLSGTVIRTL-----PESVN- 147 (543)
Q Consensus 79 ~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~l-----p~~~~- 147 (543)
..+|+++|.+++.....+++ .++++++|+|++|.++ .++..+..+++|++|+|++|.++.. ...+.
T Consensus 5 ~~ld~~~~~i~~~~~~~l~~---~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 5 QSLDIQCEELSDARWAELLP---LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEESCCCCHHHHHHHHH---HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CEEEeeCCcCChHHHHHHHH---hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 34458888887643334444 7888888888888876 2345567888888888888877632 22222
Q ss_pred cccccceeecCCCchh----hhhhHHHhhhcccceeecCCCC
Q 044382 148 KLYNLHTLLLEGCRRL----KKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
..++|++|++++|... ..++..+..+++|++|++++|.
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence 2347888888887422 2234456678888888888887
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.6e-12 Score=105.37 Aligned_cols=124 Identities=13% Similarity=0.068 Sum_probs=99.5
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-ccC
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-IGD 125 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~~~ 125 (543)
+.++|+|++++|.+..+.. .+..+++|++| ++++|.+.. + +.+..+++|++|++++|.++.+|.. +..
T Consensus 17 ~~~lr~L~L~~n~I~~i~~--~~~~l~~L~~L---~Ls~N~i~~-----l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~ 85 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVIEN--LGATLDQFDAI---DFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 85 (162)
T ss_dssp TTSCEEEECTTSCCCSCCC--GGGGTTCCSEE---ECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCcCcEEECCCCCCCccCc--cccccccCCEE---ECCCCCCCc-----c-CCcccCcchhhhhcccccccCCCcccccc
Confidence 3468999999999977643 23456666666 599999885 2 3466899999999999999998765 578
Q ss_pred cccccEEecCCCCccccch--hhhcccccceeecCCCchhhhhh----HHHhhhcccceeecC
Q 044382 126 LRYLRYLNLSGTVIRTLPE--SVNKLYNLHTLLLEGCRRLKKLC----ADMGNLIKLHHLNDS 182 (543)
Q Consensus 126 l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~ 182 (543)
+++|++|++++|.++.++. .+..+++|++|++++| .+...| ..++.+++|++||-.
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccceeccccccccccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCCC
Confidence 9999999999999998764 6789999999999998 455554 347899999999854
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.23 E-value=4.6e-12 Score=109.70 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=45.3
Q ss_pred cCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCccccc-hhhhcccccceeecCCC
Q 044382 83 LSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 83 l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~ 160 (543)
+++|.+.+.++...|. ++++|++|++++|.+..+ +..+..+++|++|+|++|.++.+| ..+.++++|++|++++|
T Consensus 36 Ls~N~i~~~~~~~~f~---~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N 112 (192)
T d1w8aa_ 36 LNDNELGRISSDGLFG---RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CCSCCCCSBCCSCSGG---GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred eCCCCCcccccccccC---CCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCc
Confidence 5555544333333333 445555555555554433 223444555555555555555442 23444555555555554
Q ss_pred chhhhhhH-HHhhhcccceeecCCCC
Q 044382 161 RRLKKLCA-DMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 161 ~~~~~l~~-~~~~l~~L~~L~l~~~~ 185 (543)
.+..+|. .+..+++|++|++++|.
T Consensus 113 -~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 113 -QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -cccccCHHHhcCCcccccccccccc
Confidence 2333332 23444555555555444
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.1e-13 Score=137.99 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=83.3
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-----cCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-----LPDS 122 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~ 122 (543)
.+++.|+++.+++.......-++.++++++|. +++|.++..-...+...+..+++|++|+|++|.++. +...
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~---L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~ 78 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVR---LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEE---EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEE---eCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence 36889999999987655445567888888886 788777642223444556689999999999999863 2333
Q ss_pred cc-CcccccEEecCCCCccc-----cchhhhcccccceeecCCCc
Q 044382 123 IG-DLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 123 ~~-~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~ 161 (543)
+. ...+|++|++++|.+++ ++..+..+++|++|++++|.
T Consensus 79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence 32 34589999999998874 35667789999999999985
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.21 E-value=5.1e-13 Score=115.99 Aligned_cols=130 Identities=19% Similarity=0.170 Sum_probs=96.3
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG 124 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~ 124 (543)
..+.....+++.+...........+..+++|+.|. +++|.+.. + +.+..+++|++|++++|.++.+|..+.
T Consensus 20 ~~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~---Ls~n~I~~-----i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~ 90 (198)
T d1m9la_ 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLA---LSTNNIEK-----I-SSLSGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp CCCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEE---CSEEEESC-----C-CCHHHHTTCCEEECCEEEECSCSSHHH
T ss_pred CcccccceeeeecccCchhhhhhHHhcccccceeE---CcccCCCC-----c-ccccCCccccChhhccccccccccccc
Confidence 33455666777664322222224567777888775 88888774 2 346688999999999999988876566
Q ss_pred CcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh--HHHhhhcccceeecCCCC
Q 044382 125 DLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~ 185 (543)
.+++|++|++++|.++.++ .+..+++|++|++++| .+..++ ..+..+++|+.|++++|.
T Consensus 91 ~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred ccccccccccccccccccc-cccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence 6778999999999988874 4788999999999987 455554 347889999999999988
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.96 E-value=1.3e-11 Score=106.97 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=90.1
Q ss_pred cccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcc
Q 044382 96 ILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIK 175 (543)
Q Consensus 96 ~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 175 (543)
++.++..+++|++|+|++|.++.++ .+..+++|++|++++|.++.+|.....+++|++|++++| .+..++. +..+++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~-~~~l~~ 116 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG-IEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHHH-HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-ccccccc-cccccc
Confidence 3456778999999999999999885 588999999999999999999877777889999999997 5666654 889999
Q ss_pred cceeecCCCCCccccc--cccccccccccccce
Q 044382 176 LHHLNDSNTDSLEEMP--LGIGKLTCLQTLCNF 206 (543)
Q Consensus 176 L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~~~ 206 (543)
|++|++++|. +..++ ..+..+++|+.|++.
T Consensus 117 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~ 148 (198)
T d1m9la_ 117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp SSEEEESEEE-CCCHHHHHHHTTTTTCSEEEEC
T ss_pred ccccccccch-hccccccccccCCCccceeecC
Confidence 9999999998 66665 347778888888643
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.2e-09 Score=90.13 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=44.5
Q ss_pred cCCeeeEEEecCCC-ccccC-ccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccce
Q 044382 102 KLQRLRVFSLRGYH-IYELP-DSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~-l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 178 (543)
.+++|++|++++++ ++.++ .+|.++++|++|++++|.++.+ |..+..+++|++|++++| .+..+|.++....+|+.
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~ 107 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQE 107 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCE
T ss_pred CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhhhccccccc
Confidence 45555556655443 55553 2355566666666666665555 334555556666666554 34455544333445556
Q ss_pred eecCCCC
Q 044382 179 LNDSNTD 185 (543)
Q Consensus 179 L~l~~~~ 185 (543)
|++++|.
T Consensus 108 L~L~~Np 114 (156)
T d2ifga3 108 LVLSGNP 114 (156)
T ss_dssp EECCSSC
T ss_pred cccCCCc
Confidence 6665555
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=7.2e-09 Score=85.42 Aligned_cols=104 Identities=15% Similarity=0.051 Sum_probs=85.1
Q ss_pred CCeeeEEEecCCCccccCccccCcccccEEecCCC-Cccccc-hhhhcccccceeecCCCchhhhhh-HHHhhhccccee
Q 044382 103 LQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGT-VIRTLP-ESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHL 179 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~-~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L 179 (543)
+.....++.+++.+...|..+..+++|++|+++++ .++.++ ..+..+++|+.|++++| .+..++ ..+..+++|++|
T Consensus 7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEE
T ss_pred cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccce
Confidence 34456688889888888888999999999999876 599885 56889999999999998 567774 558899999999
Q ss_pred ecCCCCCccccccccccccccccccceEe
Q 044382 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 180 ~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
++++|+ ++.+|.++....+|+.|++..+
T Consensus 86 ~Ls~N~-l~~l~~~~~~~~~l~~L~L~~N 113 (156)
T d2ifga3 86 NLSFNA-LESLSWKTVQGLSLQELVLSGN 113 (156)
T ss_dssp ECCSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred eccCCC-CcccChhhhccccccccccCCC
Confidence 999999 8888887655557777765433
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.72 E-value=1.7e-10 Score=109.73 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=46.3
Q ss_pred ccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCccc-----------cchhhhcccccceeecCCC
Q 044382 97 LPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIRT-----------LPESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 97 ~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~-----------lp~~~~~l~~L~~L~l~~~ 160 (543)
..++.+...++.|+|++|.++. +...+...+.|+.|+++++.... +...+..+++|+.|++++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 3344455666666666665541 23334556666666666553321 1122334556666666665
Q ss_pred ch----hhhhhHHHhhhcccceeecCCCC
Q 044382 161 RR----LKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 161 ~~----~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
.. ...+...+...++|++|++++|.
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 132 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred ccccccccchhhhhcccccchheeccccc
Confidence 32 12233334456667777776665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.70 E-value=2.3e-09 Score=101.69 Aligned_cols=241 Identities=17% Similarity=0.106 Sum_probs=124.7
Q ss_pred hhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-----------cCccccCcccccEEecCCC
Q 044382 69 LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-----------LPDSIGDLRYLRYLNLSGT 137 (543)
Q Consensus 69 ~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-----------lp~~~~~l~~L~~L~L~~~ 137 (543)
+.....++.|. +++|.+...-...+...+...+.|+.|+++++.... +...+..+++|+.|+|++|
T Consensus 27 L~~~~~l~~L~---Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 27 LLEDDSVKEIV---LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp HHHCSCCCEEE---CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HhhCCCCCEEE---CcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 34445555543 666665442222333445566777777777664331 1123456677888888777
Q ss_pred Cccc-----cchhhhcccccceeecCCCchhhhhh----HH---------HhhhcccceeecCCCCCccc-----ccccc
Q 044382 138 VIRT-----LPESVNKLYNLHTLLLEGCRRLKKLC----AD---------MGNLIKLHHLNDSNTDSLEE-----MPLGI 194 (543)
Q Consensus 138 ~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~l~----~~---------~~~l~~L~~L~l~~~~~~~~-----lp~~l 194 (543)
.++. +...+...++|++|++++|.....-. .. ....+.|+.+++++|. +.. +...+
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~l 182 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTF 182 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHH
T ss_pred ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc-ccccccccccchh
Confidence 6653 34455567778888887764211100 00 1234567777777766 321 11112
Q ss_pred ccccccccccceEecCCCCCChhhhccccccccceecccccCcCC-ccchhhhccCCccccceeeeeeecCCCCCCCccc
Q 044382 195 GKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKD-IGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEA 273 (543)
Q Consensus 195 ~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (543)
...+.++.|++..+. .... ........+..+++|+.|++++|..+ .
T Consensus 183 ~~~~~L~~L~L~~n~--------------------------i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~-------~ 229 (344)
T d2ca6a1 183 QSHRLLHTVKMVQNG--------------------------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-------H 229 (344)
T ss_dssp HHCTTCCEEECCSSC--------------------------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCH-------H
T ss_pred hhhhhhccccccccc--------------------------ccccccccchhhhhcchhhhccccccccccc-------c
Confidence 233344444221110 0000 01112223556677888888766541 0
Q ss_pred ccHHHHhcccCCCCCCcEEEEeccCCCCC-----CCCCCCCCCCCccEEEeecCCCCCC----CC-CC-CCCCccceeee
Q 044382 274 ETEKDVLDMLKPHKNLEQFGICGYGGTKF-----PTWLGDSSFLNLVTLKFEDCGMCTA----LP-SV-GQLPSLKHLTV 342 (543)
Q Consensus 274 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~-~~l~~L~~L~l 342 (543)
.........+..+++|++|++++|.+... ...+.....+.|++|++++|..... +. .+ .++++|++|++
T Consensus 230 ~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l 309 (344)
T d2ca6a1 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309 (344)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence 11122334566778888888887765321 1111111245788899988864221 11 22 25678999999
Q ss_pred cCcc
Q 044382 343 RGMS 346 (543)
Q Consensus 343 ~~~~ 346 (543)
++|.
T Consensus 310 ~~N~ 313 (344)
T d2ca6a1 310 NGNR 313 (344)
T ss_dssp TTSB
T ss_pred CCCc
Confidence 8874
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=2.3e-06 Score=70.43 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=30.4
Q ss_pred cCCeeeEEEecCCCccccC---ccccCcccccEEecCCCCccccch-hhhcccccceeecCCC
Q 044382 102 KLQRLRVFSLRGYHIYELP---DSIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGC 160 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~ 160 (543)
.++.|++|+|++|+++.++ ..+..+++|++|++++|.++++++ ......+|+.|++++|
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N 125 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC
Confidence 4556666666666655442 224455566666666665555533 1122334555555554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1.3e-06 Score=72.10 Aligned_cols=86 Identities=26% Similarity=0.126 Sum_probs=61.4
Q ss_pred ccCccccCcccccEEecCCCCcccc---chhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcccccc-
Q 044382 118 ELPDSIGDLRYLRYLNLSGTVIRTL---PESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL- 192 (543)
Q Consensus 118 ~lp~~~~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~- 192 (543)
.++..+..+++|++|+|++|.++.+ +..+..+++|+.|++++| .+..++. ...+..+|+.|++.+|.+......
T Consensus 56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~ 134 (162)
T d1koha1 56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134 (162)
T ss_dssp HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccc
Confidence 3333446789999999999999876 345678999999999997 5666654 233456799999999984332221
Q ss_pred ------cccccccccccc
Q 044382 193 ------GIGKLTCLQTLC 204 (543)
Q Consensus 193 ------~l~~l~~L~~L~ 204 (543)
.+..+++|+.|+
T Consensus 135 ~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 135 STYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHHTTSTTCCEET
T ss_pred hhHHHHHHHHCCCCCEEC
Confidence 145677777775
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.39 E-value=7.4e-05 Score=61.43 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=39.9
Q ss_pred ccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCch----
Q 044382 97 LPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRR---- 162 (543)
Q Consensus 97 ~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~---- 162 (543)
+.++...+.|++|++++|.++. +...+...+.|++|+|++|.++. +...+...+.|++|++++|..
T Consensus 37 ~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g 116 (167)
T d1pgva_ 37 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 116 (167)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCcc
Confidence 3344445555555555555441 11223344555555555555442 122333444555555554321
Q ss_pred ---hhhhhHHHhhhcccceeecCCC
Q 044382 163 ---LKKLCADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 163 ---~~~l~~~~~~l~~L~~L~l~~~ 184 (543)
...+...+..-+.|+.|++..+
T Consensus 117 ~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 117 NQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHHhCCCccEeeCcCC
Confidence 1112333444455555555443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.13 E-value=7.8e-05 Score=61.26 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=78.1
Q ss_pred CCCceEEEeecc-ccCCcc--c-hhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc----
Q 044382 47 PKNLRHLSYIPE-YFDGGK--R-FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE---- 118 (543)
Q Consensus 47 ~~~~~~L~l~~~-~~~~~~--~-~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~---- 118 (543)
.+.+++|++.++ .+.... . ...+...+.|++| ++++|.+...-...+...+...+.|++|+|++|.++.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L---~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~ 90 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKF---SLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 90 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEE---ECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCcccee---eccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence 467999999864 343221 1 2344455556665 5898888754334455556678999999999999873
Q ss_pred -cCccccCcccccEEecCCCCccc--------cchhhhcccccceeecCCCc
Q 044382 119 -LPDSIGDLRYLRYLNLSGTVIRT--------LPESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 119 -lp~~~~~l~~L~~L~L~~~~i~~--------lp~~~~~l~~L~~L~l~~~~ 161 (543)
+-..+...+.|++|++++|.+.. +...+..-+.|+.|+++.+.
T Consensus 91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 33457788999999999885443 34556678899999998863
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.98 E-value=0.00036 Score=57.11 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=46.9
Q ss_pred cccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCcc-----ccchhhhcccccceeecCCCc-hh-
Q 044382 96 ILPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIR-----TLPESVNKLYNLHTLLLEGCR-RL- 163 (543)
Q Consensus 96 ~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~-~~- 163 (543)
+..++...++|++|++++|.++. +...+...+.++.+++++|.++ .+...+...++|+.+++..+. .+
T Consensus 38 l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~ 117 (166)
T d1io0a_ 38 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 117 (166)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence 34444456666666776666542 2233455566666666666554 223444555666654443221 11
Q ss_pred ----hhhhHHHhhhcccceeecCCCC
Q 044382 164 ----KKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 164 ----~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
..+...+.+.++|+.|++..+.
T Consensus 118 ~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 118 NNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 1233345566666666665544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.11 E-value=0.00055 Score=55.90 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=78.6
Q ss_pred CCceEEEeec-cccCCcc---chhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc-----c
Q 044382 48 KNLRHLSYIP-EYFDGGK---RFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-----E 118 (543)
Q Consensus 48 ~~~~~L~l~~-~~~~~~~---~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-----~ 118 (543)
+.+++|++.+ +.+.... -..++...++|++| ++++|.+.......+...+...+.++.+++++|.++ .
T Consensus 17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L---~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKF---SIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEE---ECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCee---eccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 5789999987 4443222 12444556666666 599998876545555666668899999999999876 2
Q ss_pred cCccccCcccccEEecC--CCCcc-----ccchhhhcccccceeecCCCc
Q 044382 119 LPDSIGDLRYLRYLNLS--GTVIR-----TLPESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 119 lp~~~~~l~~L~~L~L~--~~~i~-----~lp~~~~~l~~L~~L~l~~~~ 161 (543)
+...+...+.|+.++|. +|.+. .+...+...++|+.|+++.+.
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 34567778889886665 55565 356667789999999998863
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